Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32242.t1 | XP_003628446.1 | 100 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 1.00E-264 | 922.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32242.t1 | Q54XK2 | 72.5 | 472 | 129 | 1 | 4 | 475 | 2 | 472 | 4.5e-197 | 688.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32242.t1 | G7LBX9 | 100.0 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 7.3e-265 | 922.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059103 | MS.gene32242 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene059480 | MS.gene32242 | 0.809822 | 1.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38994 | MS.gene32242 | PPI |
| MS.gene02479 | MS.gene32242 | PPI |
| MS.gene37094 | MS.gene32242 | PPI |
| MS.gene032325 | MS.gene32242 | PPI |
| MS.gene007852 | MS.gene32242 | PPI |
| MS.gene32242 | MS.gene89613 | PPI |
| MS.gene007853 | MS.gene32242 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32242.t1 | MTR_8g058330 | 100.000 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 0.0 | 964 |
| MS.gene32242.t1 | MTR_8g076770 | 99.580 | 476 | 2 | 0 | 1 | 476 | 1 | 476 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32242.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene32242.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene32242.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene32242.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene32242.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene32242.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene32242.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene32242.t1 | AT1G78720 | 90.526 | 475 | 42 | 2 | 1 | 475 | 1 | 472 | 0.0 | 879 |
Find 133 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGCCTATGTTCTTTC+TGG | 0.132994 | 8.3:-48266962 | MS.gene32242:CDS |
| CGGGCATTCTTTGACCTTAC+AGG | 0.191772 | 8.3:+48266443 | None:intergenic |
| AGCTCCCCGACCACTGTTAA+TGG | 0.203929 | 8.3:+48266640 | None:intergenic |
| GATGCAGTGAAAACATTATA+TGG | 0.228906 | 8.3:-48266682 | MS.gene32242:intron |
| CTGTCCGCGGTCTGAACTTC+AGG | 0.283558 | 8.3:+48267420 | None:intergenic |
| GCCAGCGAGCTTGGTTTCTT+TGG | 0.285931 | 8.3:-48265170 | MS.gene32242:CDS |
| TTCATGGGTGCAATTGGTTC+CGG | 0.294173 | 8.3:-48265257 | MS.gene32242:CDS |
| TATTTATTGCCACCAATATC+TGG | 0.300562 | 8.3:-48266802 | MS.gene32242:intron |
| ATTCCCACTGCTGCTGCATT+TGG | 0.313275 | 8.3:-48265317 | MS.gene32242:CDS |
| CTTGGAAGTATATCACAATT+AGG | 0.332365 | 8.3:+48266483 | None:intergenic |
| TAATAATAATTACCAGATAT+TGG | 0.334766 | 8.3:+48266790 | None:intergenic |
| GACAGTATTGGCAGATTTCA+TGG | 0.346559 | 8.3:-48265273 | MS.gene32242:CDS |
| TGGTCTTGTAATGCAGCTTT+TGG | 0.346972 | 8.3:-48267208 | MS.gene32242:CDS |
| GAGGTGTAAAACAGTTTGAT+TGG | 0.363102 | 8.3:+48266401 | None:intergenic |
| TCATGGGTGCAATTGGTTCC+GGG | 0.364241 | 8.3:-48265256 | MS.gene32242:CDS |
| AAAGGCTATGGTTTGGGATC+TGG | 0.365013 | 8.3:-48266833 | MS.gene32242:CDS |
| AAGGGCAGACTGAAGAATAA+TGG | 0.365554 | 8.3:+48266370 | None:intergenic |
| TTAGATGAGCTCCTTCAAAA+AGG | 0.368354 | 8.3:-48266851 | MS.gene32242:CDS |
| CCCACTGCTGCTGCATTTGG+AGG | 0.371658 | 8.3:-48265314 | MS.gene32242:CDS |
| TTAGAGTACTTCACTTAGTA+AGG | 0.377970 | 8.3:-48267461 | MS.gene32242:CDS |
| TGTAGTCAGCTTCCTCTGTA+TGG | 0.391279 | 8.3:-48267336 | MS.gene32242:CDS |
| GCATTTGGAGGCATGTGTAT+TGG | 0.393611 | 8.3:-48265302 | MS.gene32242:CDS |
| TTCAAACCGTGGAACTGTTA+TGG | 0.394615 | 8.3:-48267259 | MS.gene32242:CDS |
| GCAGATTTCATGGGTGCAAT+TGG | 0.395146 | 8.3:-48265263 | MS.gene32242:CDS |
| TGTTACTGCAAGTAATATTC+CGG | 0.397434 | 8.3:+48265232 | None:intergenic |
| CAACTTGCAGGAACAACAAA+TGG | 0.409211 | 8.3:-48265390 | MS.gene32242:intron |
| TATGTTCTTTCTGGAATGTA+TGG | 0.413955 | 8.3:-48266953 | MS.gene32242:CDS |
| AATGGTAATGCCTGGTCATC+GGG | 0.426397 | 8.3:-48265372 | MS.gene32242:CDS |
| AGACAAGGTTCGTGCCCTTC+GGG | 0.427599 | 8.3:-48266567 | MS.gene32242:CDS |
| CAGACAAGGTTCGTGCCCTT+CGG | 0.431276 | 8.3:-48266568 | MS.gene32242:CDS |
| AAAGAATGCCCGTGGACAGC+AGG | 0.432758 | 8.3:-48266432 | MS.gene32242:CDS |
| AAGGAAAGAGCCAGCGAGCT+TGG | 0.436512 | 8.3:-48265179 | MS.gene32242:CDS |
| CTGGGAAATGAAGTAGAGAT+TGG | 0.437679 | 8.3:+48266343 | None:intergenic |
| AGGGCAGACTGAAGAATAAT+GGG | 0.440665 | 8.3:+48266371 | None:intergenic |
| TGAAATCTGCCAATACTGTC+AGG | 0.442633 | 8.3:+48265276 | None:intergenic |
| GCTAGCAGATTTGTGACATT+GGG | 0.446952 | 8.3:+48266521 | None:intergenic |
| AACTTTATTGTGAATCTGTT+GGG | 0.450828 | 8.3:-48266206 | MS.gene32242:CDS |
| CGTGGAACTGTTATGGAGCT+TGG | 0.452315 | 8.3:-48267252 | MS.gene32242:CDS |
| TTGTGAATCTGTTGGGCAAA+TGG | 0.454503 | 8.3:-48266199 | MS.gene32242:CDS |
| TATATGACCTTCTCTCTAAA+CGG | 0.456950 | 8.3:+48267390 | None:intergenic |
| CTTGGCATCTTGATAGCTGT+TGG | 0.461242 | 8.3:-48266989 | MS.gene32242:CDS |
| GGTGCAATTGGTTCCGGGAC+CGG | 0.461353 | 8.3:-48265251 | MS.gene32242:CDS |
| CAGGTGCAGATCCATTCTAT+TGG | 0.462335 | 8.3:-48267299 | MS.gene32242:CDS |
| AAATGGAAGGAATCTGAATA+TGG | 0.470788 | 8.3:-48266182 | MS.gene32242:CDS |
| GCAAAACCACGCGGAAACCT+TGG | 0.474505 | 8.3:+48266465 | None:intergenic |
| AAAACATGGATTGAAGTCTC+TGG | 0.479925 | 8.3:-48265872 | MS.gene32242:CDS |
| TAGTATGCAATGCCACCAAC+AGG | 0.483522 | 8.3:+48266143 | None:intergenic |
| GACAACCATTAACAGTGGTC+GGG | 0.484351 | 8.3:-48266645 | MS.gene32242:CDS |
| TAATCTGGTAAGATGGGAGG+TGG | 0.484850 | 8.3:-48267486 | None:intergenic |
| TGGTCGGGGAGCTGAATTTG+AGG | 0.485535 | 8.3:-48266630 | MS.gene32242:CDS |
| CAGCAGCAGTGGGAATATAT+CGG | 0.486111 | 8.3:+48265324 | None:intergenic |
| TCAGGAAGGAATGATAGAAA+TGG | 0.489436 | 8.3:+48267438 | None:intergenic |
| AGATGTTGCCAAGCAGTTGA+AGG | 0.492024 | 8.3:-48265837 | MS.gene32242:intron |
| ACAAGACCAGAAGTGACAAT+GGG | 0.497571 | 8.3:+48267222 | None:intergenic |
| CTGTTCTAGTGATCAACAAA+TGG | 0.498414 | 8.3:+48266588 | None:intergenic |
| TGACATTGGGCAGATTCTGC+CGG | 0.499216 | 8.3:+48266534 | None:intergenic |
| CGACCACTGTTAATGGTTGT+CGG | 0.500128 | 8.3:+48266647 | None:intergenic |
| AACGGTGCACAGAAGCTACT+TGG | 0.503218 | 8.3:-48267007 | MS.gene32242:CDS |
| AAATTTGATTCCCGATGACC+AGG | 0.504394 | 8.3:+48265362 | None:intergenic |
| TATGGAATACACTCAACAAC+AGG | 0.504696 | 8.3:-48267318 | MS.gene32242:CDS |
| TATGGTAGTGTAGGCCAGCT+TGG | 0.505753 | 8.3:-48266935 | MS.gene32242:CDS |
| AAATGGTAATGCCTGGTCAT+CGG | 0.505999 | 8.3:-48265373 | MS.gene32242:CDS |
| ATAACACGCATCCAATAGAA+TGG | 0.515174 | 8.3:+48267288 | None:intergenic |
| CTGAAGAATAATGGGCATGT+TGG | 0.515561 | 8.3:+48266379 | None:intergenic |
| AGCTAGCAGATTTGTGACAT+TGG | 0.520122 | 8.3:+48266520 | None:intergenic |
| TGGCATTTCCCACTCCAAGC+TGG | 0.520195 | 8.3:+48266921 | None:intergenic |
| ACCAAAGAAACCAAGCTCGC+TGG | 0.523159 | 8.3:+48265169 | None:intergenic |
| GCCTCCAAATGCAGCAGCAG+TGG | 0.524049 | 8.3:+48265313 | None:intergenic |
| TGCAAGTAATATTCCGGTCC+CGG | 0.529370 | 8.3:+48265238 | None:intergenic |
| AAACTTTATTGTGAATCTGT+TGG | 0.531885 | 8.3:-48266207 | MS.gene32242:CDS |
| CAATCTCTACTTCATTTCCC+AGG | 0.533946 | 8.3:-48266342 | MS.gene32242:intron |
| TAAACATATGACAATGATAC+CGG | 0.537182 | 8.3:+48266871 | None:intergenic |
| CTAATTGTGATATACTTCCA+AGG | 0.539046 | 8.3:-48266482 | MS.gene32242:CDS |
| GGTCACTCTATTCCTGTTGG+TGG | 0.542254 | 8.3:-48266155 | MS.gene32242:CDS |
| CAGTTCCACGGTTTGAAGCA+AGG | 0.542857 | 8.3:+48267265 | None:intergenic |
| TGAAGTAGAGATTGGAAACA+AGG | 0.543347 | 8.3:+48266351 | None:intergenic |
| CTGAAGTTCAGACCGCGGAC+AGG | 0.547046 | 8.3:-48267419 | MS.gene32242:CDS |
| CGACAACCATTAACAGTGGT+CGG | 0.550736 | 8.3:-48266646 | MS.gene32242:CDS |
| ACAGTATTGGCAGATTTCAT+GGG | 0.552268 | 8.3:-48265272 | MS.gene32242:CDS |
| GAACAATGCATGGAAAGGAT+TGG | 0.553602 | 8.3:+48265934 | None:intergenic |
| ACTATATAACTGCACCCTCT+AGG | 0.554045 | 8.3:-48266124 | MS.gene32242:intron |
| GGTGGTCACTCTATTCCTGT+TGG | 0.554775 | 8.3:-48266158 | MS.gene32242:CDS |
| GAACAACAAATGGTAATGCC+TGG | 0.556580 | 8.3:-48265380 | MS.gene32242:CDS |
| GTACTTTGAGACATTTGAGA+AGG | 0.557787 | 8.3:-48265198 | MS.gene32242:CDS |
| AATCTGTACCTTCAACTGCT+TGG | 0.557872 | 8.3:+48265829 | None:intergenic |
| AGTGTAGGCCAGCTTGGAGT+GGG | 0.558950 | 8.3:-48266929 | MS.gene32242:CDS |
| AAGAATAATGGGCATGTTGG+AGG | 0.559009 | 8.3:+48266382 | None:intergenic |
| GGTCGGGGAGCTGAATTTGA+GGG | 0.561143 | 8.3:-48266629 | MS.gene32242:CDS |
| GATATGAACCCTGCTGTCCA+CGG | 0.564388 | 8.3:+48266423 | None:intergenic |
| GTGCCTTGTTCTCTAAAACA+TGG | 0.566040 | 8.3:-48265886 | MS.gene32242:CDS |
| ATATGAACCCTGCTGTCCAC+GGG | 0.572002 | 8.3:+48266424 | None:intergenic |
| TCTGGAATGTATGGTAGTGT+AGG | 0.575875 | 8.3:-48266944 | MS.gene32242:CDS |
| TATTGGTGCCCTGACAGTAT+TGG | 0.578050 | 8.3:-48265285 | MS.gene32242:CDS |
| GTTATCCTTGCTTCAAACCG+TGG | 0.587811 | 8.3:-48267270 | MS.gene32242:CDS |
| GCCGGTAAAATGCTTCCCGA+AGG | 0.588847 | 8.3:+48266552 | None:intergenic |
| ACACAAGGTAGAACAATGCA+TGG | 0.589874 | 8.3:+48265924 | None:intergenic |
| AAAATCCTCTATTACCTAGA+GGG | 0.592427 | 8.3:+48266110 | None:intergenic |
| AATCTGGTAAGATGGGAGGT+GGG | 0.593332 | 8.3:-48267485 | None:intergenic |
| AAAAGAGCTGGAGGATGATG+AGG | 0.594915 | 8.3:+48266897 | None:intergenic |
| AGGTAGAACAATGCATGGAA+AGG | 0.595832 | 8.3:+48265929 | None:intergenic |
| ATACATTCCAGAAAGAACAT+AGG | 0.597151 | 8.3:+48266955 | None:intergenic |
| TACAAGACCAGAAGTGACAA+TGG | 0.598549 | 8.3:+48267221 | None:intergenic |
| CAAGCTCCATAACAGTTCCA+CGG | 0.599214 | 8.3:+48267253 | None:intergenic |
| GAAAGTGCCGTTTAGAGAGA+AGG | 0.599832 | 8.3:-48267397 | MS.gene32242:CDS |
| CCTCCAAATGCAGCAGCAGT+GGG | 0.602091 | 8.3:+48265314 | None:intergenic |
| TAATAATTACCAGATATTGG+TGG | 0.605322 | 8.3:+48266793 | None:intergenic |
| TAGTGTAGGCCAGCTTGGAG+TGG | 0.606241 | 8.3:-48266930 | MS.gene32242:CDS |
| CATCTTGATAGCTGTTGGAG+AGG | 0.612529 | 8.3:-48266984 | MS.gene32242:CDS |
| AAGGAATCTGAATATGGAGG+TGG | 0.616063 | 8.3:-48266176 | MS.gene32242:CDS |
| ACAACCATTAACAGTGGTCG+GGG | 0.617144 | 8.3:-48266644 | MS.gene32242:CDS |
| CCGGTAAAATGCTTCCCGAA+GGG | 0.619784 | 8.3:+48266553 | None:intergenic |
| GAATCTGTTGGGCAAATGGA+AGG | 0.629594 | 8.3:-48266195 | MS.gene32242:CDS |
| GAAATCTGCCAATACTGTCA+GGG | 0.633038 | 8.3:+48265277 | None:intergenic |
| CCGCGGTCTGAACTTCAGGA+AGG | 0.633970 | 8.3:+48267424 | None:intergenic |
| ACAAGAGAGCACGATCCTCA+CGG | 0.636825 | 8.3:+48267151 | None:intergenic |
| AAGAATGCCCGTGGACAGCA+GGG | 0.641052 | 8.3:-48266431 | MS.gene32242:CDS |
| TTGTAATCTGGTAAGATGGG+AGG | 0.643757 | 8.3:-48267489 | None:intergenic |
| GTTGATCACTAGAACAGACA+AGG | 0.650882 | 8.3:-48266582 | MS.gene32242:CDS |
| GAAGTAGAGATTGGAAACAA+GGG | 0.653350 | 8.3:+48266352 | None:intergenic |
| GAGCTGGAGGATGATGAGGA+TGG | 0.654773 | 8.3:+48266901 | None:intergenic |
| GTTGAGTGTATTCCATACAG+AGG | 0.661533 | 8.3:+48267324 | None:intergenic |
| AAACGGCACTTTCCTGTCCG+CGG | 0.663801 | 8.3:+48267407 | None:intergenic |
| GTAAGGTCAAAGAATGCCCG+TGG | 0.666399 | 8.3:-48266440 | MS.gene32242:CDS |
| TGGAAGGAATCTGAATATGG+AGG | 0.673442 | 8.3:-48266179 | MS.gene32242:CDS |
| CCTTCCTGAAGTTCAGACCG+CGG | 0.684240 | 8.3:-48267424 | MS.gene32242:CDS |
| ACCTTACAGGCAAAACCACG+CGG | 0.696789 | 8.3:+48266456 | None:intergenic |
| ATGCTGACAGCATAAACACA+AGG | 0.705436 | 8.3:+48265909 | None:intergenic |
| AGTCCGACAACCATTAACAG+TGG | 0.707722 | 8.3:-48266650 | MS.gene32242:CDS |
| CTGCTACACAGAAAATACAG+TGG | 0.721400 | 8.3:-48266230 | MS.gene32242:CDS |
| CAAGACCAGAAGTGACAATG+GGG | 0.741804 | 8.3:+48267223 | None:intergenic |
| AGTCGACAACAATGTCCGTG+AGG | 0.748642 | 8.3:-48267166 | MS.gene32242:CDS |
| ATACTTCCAAGGTTTCCGCG+TGG | 0.759575 | 8.3:-48266471 | MS.gene32242:CDS |
| AAGACCAGAAGTGACAATGG+GGG | 0.759683 | 8.3:+48267224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAATAAAACAATTG+GGG | + | chr8.3:48267002-48267021 | None:intergenic | 15.0% |
| !! | ACAAGTATAAATAAAACAAT+TGG | + | chr8.3:48267004-48267023 | None:intergenic | 15.0% |
| !! | AGTAAAATATATTGTTAAAG+CGG | + | chr8.3:48266372-48266391 | None:intergenic | 15.0% |
| !! | CAAGTATAAATAAAACAATT+GGG | + | chr8.3:48267003-48267022 | None:intergenic | 15.0% |
| !! | TAATAATAATTACCAGATAT+TGG | + | chr8.3:48265850-48265869 | None:intergenic | 15.0% |
| !! | CATATGTAAACTTCATAAAT+AGG | + | chr8.3:48266963-48266982 | None:intergenic | 20.0% |
| !! | TCTAATATACAAAAGAAGAT+TGG | - | chr8.3:48265576-48265595 | MS.gene32242:intron | 20.0% |
| !!! | CACTTTTTTAAAACTGAAAT+TGG | - | chr8.3:48267150-48267169 | MS.gene32242:intron | 20.0% |
| !!! | GTATGAAATTTTTATCATGA+TGG | - | chr8.3:48267076-48267095 | MS.gene32242:intron | 20.0% |
| !!! | TATACTTTTATCTAGTACTA+AGG | - | chr8.3:48266864-48266883 | MS.gene32242:CDS | 20.0% |
| ! | AAACTTTATTGTGAATCTGT+TGG | - | chr8.3:48266430-48266449 | MS.gene32242:CDS | 25.0% |
| ! | AACTTTATTGTGAATCTGTT+GGG | - | chr8.3:48266431-48266450 | MS.gene32242:CDS | 25.0% |
| ! | ACAAACAAGAAAAATGAAGA+GGG | + | chr8.3:48265284-48265303 | None:intergenic | 25.0% |
| ! | ATAATAAAACTCTACTACCT+GGG | + | chr8.3:48266315-48266334 | None:intergenic | 25.0% |
| ! | CCTAAAAAATAATCAGCAAA+TGG | + | chr8.3:48267029-48267048 | None:intergenic | 25.0% |
| ! | TAAACATATGACAATGATAC+CGG | + | chr8.3:48265769-48265788 | None:intergenic | 25.0% |
| ! | TAATAATTACCAGATATTGG+TGG | + | chr8.3:48265847-48265866 | None:intergenic | 25.0% |
| ! | TACAAACAAGAAAAATGAAG+AGG | + | chr8.3:48265285-48265304 | None:intergenic | 25.0% |
| ! | TATTATGGTATGTTGCTAAT+AGG | - | chr8.3:48266329-48266348 | MS.gene32242:intron | 25.0% |
| !!! | CCATTTGCTGATTATTTTTT+AGG | - | chr8.3:48267026-48267045 | MS.gene32242:intron | 25.0% |
| !!! | TTGAAGCTTTAAATCAAACT+AGG | + | chr8.3:48266601-48266620 | None:intergenic | 25.0% |
| AAAATCCTCTATTACCTAGA+GGG | + | chr8.3:48266530-48266549 | None:intergenic | 30.0% | |
| AAATGGAAGGAATCTGAATA+TGG | - | chr8.3:48266455-48266474 | MS.gene32242:CDS | 30.0% | |
| AACTAGGCAAAGAATCTAAT+AGG | + | chr8.3:48266585-48266604 | None:intergenic | 30.0% | |
| ATACATTCCAGAAAGAACAT+AGG | + | chr8.3:48265685-48265704 | None:intergenic | 30.0% | |
| CATAATAAAACTCTACTACC+TGG | + | chr8.3:48266316-48266335 | None:intergenic | 30.0% | |
| CTAATTGTGATATACTTCCA+AGG | - | chr8.3:48266155-48266174 | MS.gene32242:CDS | 30.0% | |
| GATGCAGTGAAAACATTATA+TGG | - | chr8.3:48265955-48265974 | MS.gene32242:intron | 30.0% | |
| TATATGACCTTCTCTCTAAA+CGG | + | chr8.3:48265250-48265269 | None:intergenic | 30.0% | |
| TATTTATTGCCACCAATATC+TGG | - | chr8.3:48265835-48265854 | MS.gene32242:intron | 30.0% | |
| TGTTACTGCAAGTAATATTC+CGG | + | chr8.3:48267408-48267427 | None:intergenic | 30.0% | |
| TTACTCTTTGCTTTCAGAAA+CGG | - | chr8.3:48265612-48265631 | MS.gene32242:intron | 30.0% | |
| ! | AAAAGTGAATAGCCTTAAGA+CGG | + | chr8.3:48267137-48267156 | None:intergenic | 30.0% |
| ! | ATATTTCCTGTTGAGTTTTG+TGG | - | chr8.3:48265526-48265545 | MS.gene32242:intron | 30.0% |
| ! | CTTGGAAGTATATCACAATT+AGG | + | chr8.3:48266157-48266176 | None:intergenic | 30.0% |
| ! | TAGAGGATTTTCTATTCAGT+TGG | - | chr8.3:48266539-48266558 | MS.gene32242:CDS | 30.0% |
| ! | TTAGAGTACTTCACTTAGTA+AGG | - | chr8.3:48265176-48265195 | MS.gene32242:CDS | 30.0% |
| !! | ACAATCATTTTTCAACTTGC+AGG | - | chr8.3:48267235-48267254 | MS.gene32242:CDS | 30.0% |
| !! | TATGTTCTTTCTGGAATGTA+TGG | - | chr8.3:48265684-48265703 | MS.gene32242:intron | 30.0% |
| !!! | AATCCATGTTTTAGAGAACA+AGG | + | chr8.3:48266757-48266776 | None:intergenic | 30.0% |
| !!! | CAGGTAGTAGAGTTTTATTA+TGG | - | chr8.3:48266314-48266333 | MS.gene32242:intron | 30.0% |
| AAAAATGAAGAGGGAGATCA+CGG | + | chr8.3:48265275-48265294 | None:intergenic | 35.0% | |
| AAAACCAATCAGTTCACTCA+TGG | + | chr8.3:48267191-48267210 | None:intergenic | 35.0% | |
| ATAACACGCATCCAATAGAA+TGG | + | chr8.3:48265352-48265371 | None:intergenic | 35.0% | |
| CTGTTCTAGTGATCAACAAA+TGG | + | chr8.3:48266052-48266071 | None:intergenic | 35.0% | |
| CTTCAAAAAGGCTATGGTTT+GGG | - | chr8.3:48265798-48265817 | MS.gene32242:intron | 35.0% | |
| GAAAATCCTCTATTACCTAG+AGG | + | chr8.3:48266531-48266550 | None:intergenic | 35.0% | |
| GAAGTAGAGATTGGAAACAA+GGG | + | chr8.3:48266288-48266307 | None:intergenic | 35.0% | |
| GAGGTGTAAAACAGTTTGAT+TGG | + | chr8.3:48266239-48266258 | None:intergenic | 35.0% | |
| TAAGGAAGAGTTCTCTCATT+TGG | - | chr8.3:48265933-48265952 | MS.gene32242:CDS | 35.0% | |
| TATGGAATACACTCAACAAC+AGG | - | chr8.3:48265319-48265338 | MS.gene32242:CDS | 35.0% | |
| TCAGGAAGGAATGATAGAAA+TGG | + | chr8.3:48265202-48265221 | None:intergenic | 35.0% | |
| TGAAGTAGAGATTGGAAACA+AGG | + | chr8.3:48266289-48266308 | None:intergenic | 35.0% | |
| TTAGATGAGCTCCTTCAAAA+AGG | - | chr8.3:48265786-48265805 | MS.gene32242:intron | 35.0% | |
| TTAGTTATGAACATGTGCTG+AGG | + | chr8.3:48266909-48266928 | None:intergenic | 35.0% | |
| ! | AAAACATGGATTGAAGTCTC+TGG | - | chr8.3:48266765-48266784 | MS.gene32242:intron | 35.0% |
| ! | GTTTTACAGCTTAGCTGATA+TGG | - | chr8.3:48266677-48266696 | MS.gene32242:CDS | 35.0% |
| !! | ACAGTATTGGCAGATTTCAT+GGG | - | chr8.3:48267365-48267384 | MS.gene32242:CDS | 35.0% |
| !! | GTACTTTGAGACATTTGAGA+AGG | - | chr8.3:48267439-48267458 | MS.gene32242:CDS | 35.0% |
| !! | TTGAGTTTTGTGGTGCAATA+TGG | - | chr8.3:48265536-48265555 | MS.gene32242:intron | 35.0% |
| AAATTTGATTCCCGATGACC+AGG | + | chr8.3:48267278-48267297 | None:intergenic | 40.0% | |
| AAGGAATCTGAATATGGAGG+TGG | - | chr8.3:48266461-48266480 | MS.gene32242:CDS | 40.0% | |
| AAGGGCAGACTGAAGAATAA+TGG | + | chr8.3:48266270-48266289 | None:intergenic | 40.0% | |
| AAGTCCATGAGTGAACTGAT+TGG | - | chr8.3:48267184-48267203 | MS.gene32242:CDS | 40.0% | |
| AATCTGTACCTTCAACTGCT+TGG | + | chr8.3:48266811-48266830 | None:intergenic | 40.0% | |
| ACAAGACCAGAAGTGACAAT+GGG | + | chr8.3:48265418-48265437 | None:intergenic | 40.0% | |
| ACACAAGGTAGAACAATGCA+TGG | + | chr8.3:48266716-48266735 | None:intergenic | 40.0% | |
| ACTATATAACTGCACCCTCT+AGG | - | chr8.3:48266513-48266532 | MS.gene32242:CDS | 40.0% | |
| ACTTCATAAATAGGTCACGC+TGG | + | chr8.3:48266954-48266973 | None:intergenic | 40.0% | |
| AGCTAGCAGATTTGTGACAT+TGG | + | chr8.3:48266120-48266139 | None:intergenic | 40.0% | |
| AGGGCAGACTGAAGAATAAT+GGG | + | chr8.3:48266269-48266288 | None:intergenic | 40.0% | |
| AGGTAGAACAATGCATGGAA+AGG | + | chr8.3:48266711-48266730 | None:intergenic | 40.0% | |
| ATGCTGACAGCATAAACACA+AGG | + | chr8.3:48266731-48266750 | None:intergenic | 40.0% | |
| ATTGCACCACAAAACTCAAC+AGG | + | chr8.3:48265535-48265554 | None:intergenic | 40.0% | |
| CAACTTGCAGGAACAACAAA+TGG | - | chr8.3:48267247-48267266 | MS.gene32242:CDS | 40.0% | |
| CAATCTCTACTTCATTTCCC+AGG | - | chr8.3:48266295-48266314 | MS.gene32242:intron | 40.0% | |
| CCTTCAAAAAGGCTATGGTT+TGG | - | chr8.3:48265797-48265816 | MS.gene32242:intron | 40.0% | |
| CTGCTACACAGAAAATACAG+TGG | - | chr8.3:48266407-48266426 | MS.gene32242:CDS | 40.0% | |
| CTGGGAAATGAAGTAGAGAT+TGG | + | chr8.3:48266297-48266316 | None:intergenic | 40.0% | |
| GAAATCTGCCAATACTGTCA+GGG | + | chr8.3:48267363-48267382 | None:intergenic | 40.0% | |
| GAACAATGCATGGAAAGGAT+TGG | + | chr8.3:48266706-48266725 | None:intergenic | 40.0% | |
| GCTAGCAGATTTGTGACATT+GGG | + | chr8.3:48266119-48266138 | None:intergenic | 40.0% | |
| GTTGAGTGTATTCCATACAG+AGG | + | chr8.3:48265316-48265335 | None:intergenic | 40.0% | |
| GTTGATCACTAGAACAGACA+AGG | - | chr8.3:48266055-48266074 | MS.gene32242:intron | 40.0% | |
| TACAAGACCAGAAGTGACAA+TGG | + | chr8.3:48265419-48265438 | None:intergenic | 40.0% | |
| TGAAATCTGCCAATACTGTC+AGG | + | chr8.3:48267364-48267383 | None:intergenic | 40.0% | |
| TGGAAGGAATCTGAATATGG+AGG | - | chr8.3:48266458-48266477 | MS.gene32242:CDS | 40.0% | |
| TTCAAACCGTGGAACTGTTA+TGG | - | chr8.3:48265378-48265397 | MS.gene32242:CDS | 40.0% | |
| TTGTGAATCTGTTGGGCAAA+TGG | - | chr8.3:48266438-48266457 | MS.gene32242:CDS | 40.0% | |
| ! | AAATGGTAATGCCTGGTCAT+CGG | - | chr8.3:48267264-48267283 | MS.gene32242:CDS | 40.0% |
| ! | CCAAACCATAGCCTTTTTGA+AGG | + | chr8.3:48265800-48265819 | None:intergenic | 40.0% |
| ! | GAACAACAAATGGTAATGCC+TGG | - | chr8.3:48267257-48267276 | MS.gene32242:CDS | 40.0% |
| ! | TCTGGAATGTATGGTAGTGT+AGG | - | chr8.3:48265693-48265712 | MS.gene32242:intron | 40.0% |
| !! | AAGAATAATGGGCATGTTGG+AGG | + | chr8.3:48266258-48266277 | None:intergenic | 40.0% |
| !! | AGTTTTGTGGTGCAATATGG+TGG | - | chr8.3:48265539-48265558 | MS.gene32242:intron | 40.0% |
| !! | CTGAAGAATAATGGGCATGT+TGG | + | chr8.3:48266261-48266280 | None:intergenic | 40.0% |
| !! | GACAGTATTGGCAGATTTCA+TGG | - | chr8.3:48267364-48267383 | MS.gene32242:CDS | 40.0% |
| !! | GTGCCTTGTTCTCTAAAACA+TGG | - | chr8.3:48266751-48266770 | MS.gene32242:intron | 40.0% |
| !! | TGCAGTTGATAACCGTCTTA+AGG | - | chr8.3:48267122-48267141 | MS.gene32242:intron | 40.0% |
| !! | TTTTGTTTAGCAGTTGCGAC+AGG | + | chr8.3:48265885-48265904 | None:intergenic | 40.0% |
| !!! | TGGTCTTGTAATGCAGCTTT+TGG | - | chr8.3:48265429-48265448 | MS.gene32242:intron | 40.0% |
| AAAAGAGCTGGAGGATGATG+AGG | + | chr8.3:48265743-48265762 | None:intergenic | 45.0% | |
| AAGACCAGAAGTGACAATGG+GGG | + | chr8.3:48265416-48265435 | None:intergenic | 45.0% | |
| ACAACCATTAACAGTGGTCG+GGG | - | chr8.3:48265993-48266012 | MS.gene32242:intron | 45.0% | |
| AGATGTTGCCAAGCAGTTGA+AGG | - | chr8.3:48266800-48266819 | MS.gene32242:intron | 45.0% | |
| AGTCCGACAACCATTAACAG+TGG | - | chr8.3:48265987-48266006 | MS.gene32242:intron | 45.0% | |
| CAAGACCAGAAGTGACAATG+GGG | + | chr8.3:48265417-48265436 | None:intergenic | 45.0% | |
| CAAGCTCCATAACAGTTCCA+CGG | + | chr8.3:48265387-48265406 | None:intergenic | 45.0% | |
| CAGCAGCAGTGGGAATATAT+CGG | + | chr8.3:48267316-48267335 | None:intergenic | 45.0% | |
| CAGGTGCAGATCCATTCTAT+TGG | - | chr8.3:48265338-48265357 | MS.gene32242:CDS | 45.0% | |
| CGACAACCATTAACAGTGGT+CGG | - | chr8.3:48265991-48266010 | MS.gene32242:intron | 45.0% | |
| CGACCACTGTTAATGGTTGT+CGG | + | chr8.3:48265993-48266012 | None:intergenic | 45.0% | |
| GAATCTGTTGGGCAAATGGA+AGG | - | chr8.3:48266442-48266461 | MS.gene32242:CDS | 45.0% | |
| GACAACCATTAACAGTGGTC+GGG | - | chr8.3:48265992-48266011 | MS.gene32242:intron | 45.0% | |
| GAGCTCCTTCAAAAAGGCTA+TGG | - | chr8.3:48265792-48265811 | MS.gene32242:intron | 45.0% | |
| GCAGATTTCATGGGTGCAAT+TGG | - | chr8.3:48267374-48267393 | MS.gene32242:CDS | 45.0% | |
| GCTGTTGCCTATGTTCTTTC+TGG | - | chr8.3:48265675-48265694 | MS.gene32242:intron | 45.0% | |
| GTTATCCTTGCTTCAAACCG+TGG | - | chr8.3:48265367-48265386 | MS.gene32242:CDS | 45.0% | |
| TAGTATGCAATGCCACCAAC+AGG | + | chr8.3:48266497-48266516 | None:intergenic | 45.0% | |
| TGATACCGGCAAAAAAGAGC+TGG | + | chr8.3:48265755-48265774 | None:intergenic | 45.0% | |
| TGCAAGTAATATTCCGGTCC+CGG | + | chr8.3:48267402-48267421 | None:intergenic | 45.0% | |
| TGTAGTCAGCTTCCTCTGTA+TGG | - | chr8.3:48265301-48265320 | MS.gene32242:CDS | 45.0% | |
| ! | AAAGGCTATGGTTTGGGATC+TGG | - | chr8.3:48265804-48265823 | MS.gene32242:intron | 45.0% |
| ! | AATGGTAATGCCTGGTCATC+GGG | - | chr8.3:48267265-48267284 | MS.gene32242:CDS | 45.0% |
| ! | CATCTTGATAGCTGTTGGAG+AGG | - | chr8.3:48265653-48265672 | MS.gene32242:intron | 45.0% |
| ! | CTTGGCATCTTGATAGCTGT+TGG | - | chr8.3:48265648-48265667 | MS.gene32242:intron | 45.0% |
| ! | CTTGTAATGCAGCTTTTGGC+TGG | - | chr8.3:48265433-48265452 | MS.gene32242:intron | 45.0% |
| ! | GCATTTGGAGGCATGTGTAT+TGG | - | chr8.3:48267335-48267354 | MS.gene32242:CDS | 45.0% |
| ! | TATTGGTGCCCTGACAGTAT+TGG | - | chr8.3:48267352-48267371 | MS.gene32242:CDS | 45.0% |
| ! | TTCATGGGTGCAATTGGTTC+CGG | - | chr8.3:48267380-48267399 | MS.gene32242:CDS | 45.0% |
| !! | GAAAGTGCCGTTTAGAGAGA+AGG | - | chr8.3:48265240-48265259 | MS.gene32242:CDS | 45.0% |
| !!! | ATCCTCCAGCTCTTTTTTGC+CGG | - | chr8.3:48265747-48265766 | MS.gene32242:intron | 45.0% |
| !!! | TAGATTTTTTTTATATAAAA+AGG | + | chr8.3:48265915-48265934 | None:intergenic | 5.0% |
| !!! | TTTTATATAAAAAAAATCTA+AGG | - | chr8.3:48265915-48265934 | MS.gene32242:CDS | 5.0% |
| AACGGTGCACAGAAGCTACT+TGG | - | chr8.3:48265630-48265649 | MS.gene32242:intron | 50.0% | |
| ACCAAAGAAACCAAGCTCGC+TGG | + | chr8.3:48267471-48267490 | None:intergenic | 50.0% | |
| ACCTTACAGGCAAAACCACG+CGG | + | chr8.3:48266184-48266203 | None:intergenic | 50.0% | |
| AGTCGACAACAATGTCCGTG+AGG | - | chr8.3:48265471-48265490 | MS.gene32242:intron | 50.0% | |
| ATACTTCCAAGGTTTCCGCG+TGG | - | chr8.3:48266166-48266185 | MS.gene32242:CDS | 50.0% | |
| ATATGAACCCTGCTGTCCAC+GGG | + | chr8.3:48266216-48266235 | None:intergenic | 50.0% | |
| ATTCCCACTGCTGCTGCATT+TGG | - | chr8.3:48267320-48267339 | MS.gene32242:CDS | 50.0% | |
| CCGGTAAAATGCTTCCCGAA+GGG | + | chr8.3:48266087-48266106 | None:intergenic | 50.0% | |
| CGGGCATTCTTTGACCTTAC+AGG | + | chr8.3:48266197-48266216 | None:intergenic | 50.0% | |
| CGTGGAACTGTTATGGAGCT+TGG | - | chr8.3:48265385-48265404 | MS.gene32242:intron | 50.0% | |
| CTGCACCCTCTAGGTAATAG+AGG | - | chr8.3:48266522-48266541 | MS.gene32242:CDS | 50.0% | |
| GATATGAACCCTGCTGTCCA+CGG | + | chr8.3:48266217-48266236 | None:intergenic | 50.0% | |
| GGTCACTCTATTCCTGTTGG+TGG | - | chr8.3:48266482-48266501 | MS.gene32242:CDS | 50.0% | |
| GGTGGTCACTCTATTCCTGT+TGG | - | chr8.3:48266479-48266498 | MS.gene32242:CDS | 50.0% | |
| GTAAGGTCAAAGAATGCCCG+TGG | - | chr8.3:48266197-48266216 | MS.gene32242:CDS | 50.0% | |
| TACCGGCAAAAAAGAGCTGG+AGG | + | chr8.3:48265752-48265771 | None:intergenic | 50.0% | |
| TGACATTGGGCAGATTCTGC+CGG | + | chr8.3:48266106-48266125 | None:intergenic | 50.0% | |
| ! | ACAAGAGAGCACGATCCTCA+CGG | + | chr8.3:48265489-48265508 | None:intergenic | 50.0% |
| ! | ATCACCCCCATTGTCACTTC+TGG | - | chr8.3:48265409-48265428 | MS.gene32242:intron | 50.0% |
| ! | CAGTTCCACGGTTTGAAGCA+AGG | + | chr8.3:48265375-48265394 | None:intergenic | 50.0% |
| ! | TATGGTAGTGTAGGCCAGCT+TGG | - | chr8.3:48265702-48265721 | MS.gene32242:intron | 50.0% |
| ! | TCATGGGTGCAATTGGTTCC+GGG | - | chr8.3:48267381-48267400 | MS.gene32242:CDS | 50.0% |
| !!! | CCCTTCGGGAAGCATTTTAC+CGG | - | chr8.3:48266084-48266103 | MS.gene32242:intron | 50.0% |
| AAACGGCACTTTCCTGTCCG+CGG | + | chr8.3:48265233-48265252 | None:intergenic | 55.0% | |
| AAAGAATGCCCGTGGACAGC+AGG | - | chr8.3:48266205-48266224 | MS.gene32242:CDS | 55.0% | |
| AAGAATGCCCGTGGACAGCA+GGG | - | chr8.3:48266206-48266225 | MS.gene32242:CDS | 55.0% | |
| AAGGAAAGAGCCAGCGAGCT+TGG | - | chr8.3:48267458-48267477 | MS.gene32242:CDS | 55.0% | |
| AGACAAGGTTCGTGCCCTTC+GGG | - | chr8.3:48266070-48266089 | MS.gene32242:intron | 55.0% | |
| AGCTCCCCGACCACTGTTAA+TGG | + | chr8.3:48266000-48266019 | None:intergenic | 55.0% | |
| AGTGTAGGCCAGCTTGGAGT+GGG | - | chr8.3:48265708-48265727 | MS.gene32242:intron | 55.0% | |
| CAGACAAGGTTCGTGCCCTT+CGG | - | chr8.3:48266069-48266088 | MS.gene32242:intron | 55.0% | |
| CCTCCAAATGCAGCAGCAGT+GGG | + | chr8.3:48267326-48267345 | None:intergenic | 55.0% | |
| CCTTCCTGAAGTTCAGACCG+CGG | - | chr8.3:48265213-48265232 | MS.gene32242:CDS | 55.0% | |
| GAGCTGGAGGATGATGAGGA+TGG | + | chr8.3:48265739-48265758 | None:intergenic | 55.0% | |
| GCAAAACCACGCGGAAACCT+TGG | + | chr8.3:48266175-48266194 | None:intergenic | 55.0% | |
| GCCAGCGAGCTTGGTTTCTT+TGG | - | chr8.3:48267467-48267486 | MS.gene32242:CDS | 55.0% | |
| GCCGGTAAAATGCTTCCCGA+AGG | + | chr8.3:48266088-48266107 | None:intergenic | 55.0% | |
| GGTCGGGGAGCTGAATTTGA+GGG | - | chr8.3:48266008-48266027 | MS.gene32242:intron | 55.0% | |
| TAGTGTAGGCCAGCTTGGAG+TGG | - | chr8.3:48265707-48265726 | MS.gene32242:intron | 55.0% | |
| TGGCATTTCCCACTCCAAGC+TGG | + | chr8.3:48265719-48265738 | None:intergenic | 55.0% | |
| TGGTCGGGGAGCTGAATTTG+AGG | - | chr8.3:48266007-48266026 | MS.gene32242:intron | 55.0% | |
| !! | TCCGCGTGGTTTTGCCTGTA+AGG | - | chr8.3:48266180-48266199 | MS.gene32242:CDS | 55.0% |
| CCCACTGCTGCTGCATTTGG+AGG | - | chr8.3:48267323-48267342 | MS.gene32242:CDS | 60.0% | |
| CCGCGGTCTGAACTTCAGGA+AGG | + | chr8.3:48265216-48265235 | None:intergenic | 60.0% | |
| CTGAAGTTCAGACCGCGGAC+AGG | - | chr8.3:48265218-48265237 | MS.gene32242:CDS | 60.0% | |
| CTGTCCGCGGTCTGAACTTC+AGG | + | chr8.3:48265220-48265239 | None:intergenic | 60.0% | |
| GCCTCCAAATGCAGCAGCAG+TGG | + | chr8.3:48267327-48267346 | None:intergenic | 60.0% | |
| ! | GGTGCAATTGGTTCCGGGAC+CGG | - | chr8.3:48267386-48267405 | MS.gene32242:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48265163 | 48267496 | 48265163 | ID=MS.gene32242 |
| chr8.3 | mRNA | 48265163 | 48267496 | 48265163 | ID=MS.gene32242.t1;Parent=MS.gene32242 |
| chr8.3 | exon | 48267153 | 48267496 | 48267153 | ID=MS.gene32242.t1.exon1;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48267153 | 48267496 | 48267153 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| chr8.3 | exon | 48266803 | 48267030 | 48266803 | ID=MS.gene32242.t1.exon2;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48266803 | 48267030 | 48266803 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| chr8.3 | exon | 48266343 | 48266697 | 48266343 | ID=MS.gene32242.t1.exon3;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48266343 | 48266697 | 48266343 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| chr8.3 | exon | 48266125 | 48266252 | 48266125 | ID=MS.gene32242.t1.exon4;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48266125 | 48266252 | 48266125 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| chr8.3 | exon | 48265838 | 48265973 | 48265838 | ID=MS.gene32242.t1.exon5;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48265838 | 48265973 | 48265838 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| chr8.3 | exon | 48265163 | 48265402 | 48265163 | ID=MS.gene32242.t1.exon6;Parent=MS.gene32242.t1 |
| chr8.3 | CDS | 48265163 | 48265402 | 48265163 | ID=cds.MS.gene32242.t1;Parent=MS.gene32242.t1 |
| Gene Sequence |
| Protein sequence |
