Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032325.t1 | XP_003628446.1 | 100 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 1.00E-264 | 922.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032325.t1 | Q54XK2 | 72.5 | 472 | 129 | 1 | 4 | 475 | 2 | 472 | 4.5e-197 | 688.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032325.t1 | G7LBX9 | 100.0 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 7.3e-265 | 922.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032325 | MS.gene89613 | PPI |
| MS.gene032325 | MS.gene37094 | PPI |
| MS.gene38994 | MS.gene032325 | PPI |
| MS.gene02479 | MS.gene032325 | PPI |
| MS.gene032325 | MS.gene007853 | PPI |
| MS.gene032325 | MS.gene007852 | PPI |
| MS.gene032325 | MS.gene32242 | PPI |
| MS.gene007853 | MS.gene032325 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032325.t1 | MTR_8g058330 | 100.000 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 0.0 | 964 |
| MS.gene032325.t1 | MTR_8g076770 | 99.580 | 476 | 2 | 0 | 1 | 476 | 1 | 476 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032325.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene032325.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene032325.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene032325.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene032325.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene032325.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene032325.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene032325.t1 | AT1G78720 | 90.526 | 475 | 42 | 2 | 1 | 475 | 1 | 472 | 0.0 | 879 |
Find 135 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGCATTCTTTGACCTTAC+AGG | 0.191772 | 8.2:+48252447 | None:intergenic |
| GATGCAGTGAAAACATTATA+TGG | 0.228906 | 8.2:-48252686 | MS.gene032325:intron |
| AGCTCCCCGACCACTGTTAA+TGG | 0.255574 | 8.2:+48252644 | None:intergenic |
| GTAAGATGGGAGGTGGGTTT+AGG | 0.266404 | 8.2:-48253461 | None:intergenic |
| GCCAGCGAGCTTGGTTTCTT+TGG | 0.285931 | 8.2:-48251164 | MS.gene032325:CDS |
| TTCATGGGTGCAATTGGTTC+CGG | 0.294173 | 8.2:-48251251 | MS.gene032325:CDS |
| CTGTCTGCGGTCTGAACTTC+AGG | 0.301488 | 8.2:+48253402 | None:intergenic |
| ATTCCCACTGCTGCTGCATT+TGG | 0.313275 | 8.2:-48251311 | MS.gene032325:CDS |
| CTTGGAAGTATATCACAATT+AGG | 0.332365 | 8.2:+48252487 | None:intergenic |
| TAATAATAATTACCAGATAT+TGG | 0.334766 | 8.2:+48252794 | None:intergenic |
| TATTCATTGCCACCAATATC+TGG | 0.338652 | 8.2:-48252806 | MS.gene032325:intron |
| TAAGATGGGAGGTGGGTTTA+GGG | 0.344334 | 8.2:-48253460 | None:intergenic |
| GACAGTATTGGCAGATTTCA+TGG | 0.346559 | 8.2:-48251267 | MS.gene032325:CDS |
| TGGTCTTGTAATGCAGCTTT+TGG | 0.346972 | 8.2:-48253190 | MS.gene032325:CDS |
| GAGGTGTAAAACAGTTTGAT+TGG | 0.363102 | 8.2:+48252405 | None:intergenic |
| TCATGGGTGCAATTGGTTCC+GGG | 0.364241 | 8.2:-48251250 | MS.gene032325:CDS |
| AAAGGCTATGGTTTGGGATC+TGG | 0.365013 | 8.2:-48252837 | MS.gene032325:CDS |
| AAGGGCAGACTGAAGAATAA+TGG | 0.365554 | 8.2:+48252374 | None:intergenic |
| TTAGATGAGCTCCTTCAAAA+AGG | 0.368354 | 8.2:-48252855 | MS.gene032325:CDS |
| TGTAGTCAGCTTCCTCTGTA+TGG | 0.391279 | 8.2:-48253318 | MS.gene032325:CDS |
| TTCAAACCGTGGAACTGTTA+TGG | 0.394615 | 8.2:-48253241 | MS.gene032325:CDS |
| GCAGATTTCATGGGTGCAAT+TGG | 0.395146 | 8.2:-48251257 | MS.gene032325:CDS |
| TGTTACTGCAAGTAATATTC+CGG | 0.397434 | 8.2:+48251226 | None:intergenic |
| CCGACCACTGTTAATGGTTG+TGG | 0.403048 | 8.2:+48252650 | None:intergenic |
| TTAGGGTACTTCACTTAGTA+AGG | 0.406793 | 8.2:-48253443 | MS.gene032325:CDS |
| CAACTTGCAGGAACAACAAA+TGG | 0.409211 | 8.2:-48251384 | MS.gene032325:intron |
| GCCAGCAGATTTGTGACATT+GGG | 0.411446 | 8.2:+48252525 | None:intergenic |
| CCCACTGCTGCTGCATTTGG+AGG | 0.416693 | 8.2:-48251308 | MS.gene032325:CDS |
| GTGCCTTGTTCTCTAAAACT+TGG | 0.421361 | 8.2:-48251887 | MS.gene032325:CDS |
| AATGGTAATGCCTGGTCATC+GGG | 0.426397 | 8.2:-48251366 | MS.gene032325:CDS |
| AGACAAGGTTCGTGCCCTTC+GGG | 0.427599 | 8.2:-48252571 | MS.gene032325:CDS |
| CAGACAAGGTTCGTGCCCTT+CGG | 0.431276 | 8.2:-48252572 | MS.gene032325:CDS |
| AAAGAATGCCCGTGGACAGC+AGG | 0.432758 | 8.2:-48252436 | MS.gene032325:CDS |
| AAGGAAAGAGCCAGCGAGCT+TGG | 0.436512 | 8.2:-48251173 | MS.gene032325:CDS |
| CTGTTCTAGTTATCAACAAA+TGG | 0.437529 | 8.2:+48252592 | None:intergenic |
| CTGGGAAATGAAGTAGAGAT+TGG | 0.437679 | 8.2:+48252347 | None:intergenic |
| TTGTGAATCTGTTGGGCAAA+TGG | 0.440455 | 8.2:-48252205 | MS.gene032325:CDS |
| AGGGCAGACTGAAGAATAAT+GGG | 0.440665 | 8.2:+48252375 | None:intergenic |
| TGAAATCTGCCAATACTGTC+AGG | 0.442633 | 8.2:+48251270 | None:intergenic |
| CGTGGAACTGTTATGGAGCT+TGG | 0.452315 | 8.2:-48253234 | MS.gene032325:CDS |
| TGGTCGGGGAGCTGAGTTTG+AGG | 0.453280 | 8.2:-48252634 | MS.gene032325:CDS |
| AAAACTTGGATTGAAGTCTC+TGG | 0.456476 | 8.2:-48251873 | MS.gene032325:CDS |
| GCTGTTGCCTATGTTCTGTC+TGG | 0.456478 | 8.2:-48252966 | MS.gene032325:CDS |
| TATATGACCTTCTCTCTAAA+CGG | 0.456950 | 8.2:+48253372 | None:intergenic |
| CTTGGCATCTTGATAGCTGT+TGG | 0.461242 | 8.2:-48252993 | MS.gene032325:CDS |
| GGTGCAATTGGTTCCGGGAC+CGG | 0.461353 | 8.2:-48251245 | MS.gene032325:CDS |
| CAGGTGCAGATCCATTCTAT+TGG | 0.462335 | 8.2:-48253281 | MS.gene032325:CDS |
| CACAACCATTAACAGTGGTC+GGG | 0.464038 | 8.2:-48252649 | MS.gene032325:CDS |
| GCAAAACCACGCGGAAACCT+TGG | 0.474505 | 8.2:+48252469 | None:intergenic |
| CGACCACTGTTAATGGTTGT+GGG | 0.480413 | 8.2:+48252651 | None:intergenic |
| TATGGAATACACTCGACAAC+AGG | 0.481173 | 8.2:-48253300 | MS.gene032325:CDS |
| TAGTATGCAATGCCACCAAC+AGG | 0.483522 | 8.2:+48252149 | None:intergenic |
| CAGCAGCAGTGGGAATATAT+CGG | 0.486111 | 8.2:+48251318 | None:intergenic |
| TCAGGAAGGAATGATAGAAA+TGG | 0.489436 | 8.2:+48253420 | None:intergenic |
| AAATGGAAGGAATCTGAGTA+TGG | 0.491085 | 8.2:-48252188 | MS.gene032325:CDS |
| AGATGTTGCCAAGCAGTTGA+AGG | 0.492024 | 8.2:-48251838 | MS.gene032325:intron |
| TACGGTAGTGTAGGCCAGCT+TGG | 0.494011 | 8.2:-48252939 | MS.gene032325:CDS |
| TCCCAATGTCACAAATCTGC+TGG | 0.495762 | 8.2:-48252526 | MS.gene032325:CDS |
| ACAAGACCAGAAGTGACAAT+GGG | 0.497571 | 8.2:+48253204 | None:intergenic |
| AACTTCATTGTGAATCTGTT+GGG | 0.502266 | 8.2:-48252212 | MS.gene032325:CDS |
| AACGGTGCACAGAAGCTACT+TGG | 0.503218 | 8.2:-48253011 | MS.gene032325:CDS |
| GCATTTGGAGGAATGTGTAT+TGG | 0.503549 | 8.2:-48251296 | MS.gene032325:CDS |
| AAATTTGATTCCCGATGACC+AGG | 0.504394 | 8.2:+48251356 | None:intergenic |
| AAATGGTAATGCCTGGTCAT+CGG | 0.505999 | 8.2:-48251367 | MS.gene032325:CDS |
| GGTCGGGGAGCTGAGTTTGA+GGG | 0.506235 | 8.2:-48252633 | MS.gene032325:CDS |
| TAATCTGGTAAGATGGGAGG+TGG | 0.509180 | 8.2:-48253468 | None:intergenic |
| ATAACACGCATCCAATAGAA+TGG | 0.515174 | 8.2:+48253270 | None:intergenic |
| CTGAAGAATAATGGGCATGT+TGG | 0.515561 | 8.2:+48252383 | None:intergenic |
| TGGCATTTCCCACTCCAAGC+TGG | 0.520195 | 8.2:+48252925 | None:intergenic |
| ACCAAAGAAACCAAGCTCGC+TGG | 0.523159 | 8.2:+48251163 | None:intergenic |
| TCCTCCAAATGCAGCAGCAG+TGG | 0.526488 | 8.2:+48251307 | None:intergenic |
| TGCAAGTAATATTCCGGTCC+CGG | 0.529370 | 8.2:+48251232 | None:intergenic |
| AGCCAGCAGATTTGTGACAT+TGG | 0.530744 | 8.2:+48252524 | None:intergenic |
| CAATCTCTACTTCATTTCCC+AGG | 0.533946 | 8.2:-48252346 | MS.gene032325:intron |
| TAAACATATGACAATGATAC+CGG | 0.537182 | 8.2:+48252875 | None:intergenic |
| CTAATTGTGATATACTTCCA+AGG | 0.539046 | 8.2:-48252486 | MS.gene032325:CDS |
| GGTCACTCTATTCCTGTTGG+TGG | 0.542254 | 8.2:-48252161 | MS.gene032325:CDS |
| CAGTTCCACGGTTTGAAGCA+AGG | 0.542857 | 8.2:+48253247 | None:intergenic |
| TGAAGTAGAGATTGGAAACA+AGG | 0.543347 | 8.2:+48252355 | None:intergenic |
| AAACTTCATTGTGAATCTGT+TGG | 0.548669 | 8.2:-48252213 | MS.gene032325:CDS |
| ACAGTATTGGCAGATTTCAT+GGG | 0.552268 | 8.2:-48251266 | MS.gene032325:CDS |
| GAACAATGCATGGAAAGGAT+TGG | 0.553602 | 8.2:+48251935 | None:intergenic |
| CCACAACCATTAACAGTGGT+CGG | 0.553676 | 8.2:-48252650 | MS.gene032325:CDS |
| ACTATATAACTGCACCCTCT+AGG | 0.554045 | 8.2:-48252130 | MS.gene032325:intron |
| GGTGGTCACTCTATTCCTGT+TGG | 0.554775 | 8.2:-48252164 | MS.gene032325:CDS |
| GAACAACAAATGGTAATGCC+TGG | 0.556580 | 8.2:-48251374 | MS.gene032325:CDS |
| GTACTTTGAGACATTTGAGA+AGG | 0.557787 | 8.2:-48251192 | MS.gene032325:CDS |
| AATCTGTACCTTCAACTGCT+TGG | 0.557872 | 8.2:+48251830 | None:intergenic |
| AGTGTAGGCCAGCTTGGAGT+GGG | 0.558950 | 8.2:-48252933 | MS.gene032325:CDS |
| AAGAATAATGGGCATGTTGG+AGG | 0.559009 | 8.2:+48252386 | None:intergenic |
| GCCGGTAAAATGCTTCCCGA+AGG | 0.562392 | 8.2:+48252556 | None:intergenic |
| GATATGAACCCTGCTGTCCA+CGG | 0.564388 | 8.2:+48252427 | None:intergenic |
| ATATGAACCCTGCTGTCCAC+GGG | 0.572002 | 8.2:+48252428 | None:intergenic |
| CTGAAGTTCAGACCGCAGAC+AGG | 0.574829 | 8.2:-48253401 | MS.gene032325:CDS |
| TATGTTCTGTCTGGAATGTA+CGG | 0.576377 | 8.2:-48252957 | MS.gene032325:CDS |
| AAAATTCTCTATTACCTAGA+GGG | 0.576749 | 8.2:+48252116 | None:intergenic |
| TATTGGTGCCCTGACAGTAT+TGG | 0.578050 | 8.2:-48251279 | MS.gene032325:CDS |
| TAGTGTAGGCCAGCTTGGAG+TGG | 0.578524 | 8.2:-48252934 | MS.gene032325:CDS |
| GTTATCCTTGCTTCAAACCG+TGG | 0.587811 | 8.2:-48253252 | MS.gene032325:CDS |
| CCGGTAAAATGCTTCCCGAA+GGG | 0.587842 | 8.2:+48252557 | None:intergenic |
| ACACAAGGTAGAACAATGCA+TGG | 0.589874 | 8.2:+48251925 | None:intergenic |
| CCTCCAAATGCAGCAGCAGT+GGG | 0.591311 | 8.2:+48251308 | None:intergenic |
| AAAAGAGCTGGAGGATGATG+AGG | 0.594915 | 8.2:+48252901 | None:intergenic |
| AGGTAGAACAATGCATGGAA+AGG | 0.595832 | 8.2:+48251930 | None:intergenic |
| TACAAGACCAGAAGTGACAA+TGG | 0.598549 | 8.2:+48253203 | None:intergenic |
| CAAGCTCCATAACAGTTCCA+CGG | 0.599214 | 8.2:+48253235 | None:intergenic |
| GAAAGTGCCGTTTAGAGAGA+AGG | 0.599832 | 8.2:-48253379 | MS.gene032325:CDS |
| TCTGGAATGTACGGTAGTGT+AGG | 0.602546 | 8.2:-48252948 | MS.gene032325:CDS |
| TAATAATTACCAGATATTGG+TGG | 0.605322 | 8.2:+48252797 | None:intergenic |
| AAGGAATCTGAGTATGGAGG+TGG | 0.605957 | 8.2:-48252182 | MS.gene032325:CDS |
| CATCTTGATAGCTGTTGGAG+AGG | 0.612529 | 8.2:-48252988 | MS.gene032325:CDS |
| ACAACCATTAACAGTGGTCG+GGG | 0.617144 | 8.2:-48252648 | MS.gene032325:CDS |
| GAATCTGTTGGGCAAATGGA+AGG | 0.629594 | 8.2:-48252201 | MS.gene032325:CDS |
| CTGCGGTCTGAACTTCAGGA+AGG | 0.631531 | 8.2:+48253406 | None:intergenic |
| GAAATCTGCCAATACTGTCA+GGG | 0.633038 | 8.2:+48251271 | None:intergenic |
| CTGTAATCTGGTAAGATGGG+AGG | 0.638392 | 8.2:-48253471 | None:intergenic |
| AAGAATGCCCGTGGACAGCA+GGG | 0.641052 | 8.2:-48252435 | MS.gene032325:CDS |
| AAACGGCACTTTCCTGTCTG+CGG | 0.646821 | 8.2:+48253389 | None:intergenic |
| GTACATTCCAGACAGAACAT+AGG | 0.651614 | 8.2:+48252959 | None:intergenic |
| GAAGTAGAGATTGGAAACAA+GGG | 0.653350 | 8.2:+48252356 | None:intergenic |
| GAGCTGGAGGATGATGAGGA+TGG | 0.654773 | 8.2:+48252905 | None:intergenic |
| GTAAGGTCAAAGAATGCCCG+TGG | 0.666399 | 8.2:-48252444 | MS.gene032325:CDS |
| GTTGATAACTAGAACAGACA+AGG | 0.670921 | 8.2:-48252586 | MS.gene032325:CDS |
| GTCGAGTGTATTCCATACAG+AGG | 0.671262 | 8.2:+48253306 | None:intergenic |
| AATCTGGTAAGATGGGAGGT+GGG | 0.678738 | 8.2:-48253467 | None:intergenic |
| TGGAAGGAATCTGAGTATGG+AGG | 0.680500 | 8.2:-48252185 | MS.gene032325:CDS |
| ACCTTACAGGCAAAACCACG+CGG | 0.696789 | 8.2:+48252460 | None:intergenic |
| AGTCCCACAACCATTAACAG+TGG | 0.707722 | 8.2:-48252654 | MS.gene032325:CDS |
| ACAAGAGAGCACGATCCTCG+CGG | 0.713826 | 8.2:+48253133 | None:intergenic |
| ATGCTGACAACATAAACACA+AGG | 0.717976 | 8.2:+48251910 | None:intergenic |
| CTGCTACACAGAAAATACAG+TGG | 0.721400 | 8.2:-48252236 | MS.gene032325:CDS |
| CAAGACCAGAAGTGACAATG+GGG | 0.741804 | 8.2:+48253205 | None:intergenic |
| ATACTTCCAAGGTTTCCGCG+TGG | 0.759575 | 8.2:-48252475 | MS.gene032325:CDS |
| AAGACCAGAAGTGACAATGG+GGG | 0.759683 | 8.2:+48253206 | None:intergenic |
| AGTCGACAACAATGTCCGCG+AGG | 0.765865 | 8.2:-48253148 | MS.gene032325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTTTTATATAAAA+AGG | + | chr8.2:48251887-48251906 | None:intergenic | 0.0% |
| !!! | TTTTATATAAAAAAAATTTA+AGG | - | chr8.2:48251887-48251906 | MS.gene032325:CDS | 0.0% |
| !! | ACAAAAAAAAAAAACAATTT+GGG | + | chr8.2:48252972-48252991 | None:intergenic | 10.0% |
| !!! | TTTAATGATATTTATTGTTT+TGG | - | chr8.2:48252602-48252621 | MS.gene032325:CDS | 10.0% |
| !! | AAAAAAATAATTTCAGCATA+TGG | + | chr8.2:48252949-48252968 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAAAACAATT+TGG | + | chr8.2:48252973-48252992 | None:intergenic | 15.0% |
| !! | TAATAATAATTACCAGATAT+TGG | + | chr8.2:48251822-48251841 | None:intergenic | 15.0% |
| !! | TCTAATATACAAAAGTAGAT+TGG | - | chr8.2:48251548-48251567 | MS.gene032325:intron | 20.0% |
| !!! | CACTTTACTGATTATATTTT+AGG | - | chr8.2:48253004-48253023 | MS.gene032325:CDS | 20.0% |
| !!! | TATACTTTTATCTAGTACTA+AGG | - | chr8.2:48252839-48252858 | MS.gene032325:CDS | 20.0% |
| !!! | TTTTAACAATACGATTTTAC+TGG | - | chr8.2:48252344-48252363 | MS.gene032325:intron | 20.0% |
| ! | AAAATTCTCTATTACCTAGA+GGG | + | chr8.2:48252500-48252519 | None:intergenic | 25.0% |
| ! | AGATCAAACAAAACTCAATT+AGG | + | chr8.2:48251531-48251550 | None:intergenic | 25.0% |
| ! | ATAATAAAACTCTACTACCT+GGG | + | chr8.2:48252287-48252306 | None:intergenic | 25.0% |
| ! | GGCAAAGAATATAATCTAAT+AGG | + | chr8.2:48252555-48252574 | None:intergenic | 25.0% |
| ! | TAAACATATGACAATGATAC+CGG | + | chr8.2:48251741-48251760 | None:intergenic | 25.0% |
| ! | TAATAATTACCAGATATTGG+TGG | + | chr8.2:48251819-48251838 | None:intergenic | 25.0% |
| !! | TAGAGAATTTTCTATTCAGT+TGG | - | chr8.2:48252509-48252528 | MS.gene032325:CDS | 25.0% |
| !! | TTGAAGCTTTATATCAAACT+AGG | + | chr8.2:48252576-48252595 | None:intergenic | 25.0% |
| !!! | CACTTTTTTAACACTGAAAT+TGG | - | chr8.2:48253132-48253151 | MS.gene032325:intron | 25.0% |
| !!! | GTCTGAAATTTTTATGATGA+TGG | - | chr8.2:48253058-48253077 | MS.gene032325:intron | 25.0% |
| AAAAATGAAGAGAGAGATCA+CGG | + | chr8.2:48251269-48251288 | None:intergenic | 30.0% | |
| AAACTTCATTGTGAATCTGT+TGG | - | chr8.2:48252400-48252419 | MS.gene032325:CDS | 30.0% | |
| AACTTCATTGTGAATCTGTT+GGG | - | chr8.2:48252401-48252420 | MS.gene032325:CDS | 30.0% | |
| CATAATAAAACTCTACTACC+TGG | + | chr8.2:48252288-48252307 | None:intergenic | 30.0% | |
| CTAATTGTGATATACTTCCA+AGG | - | chr8.2:48252127-48252146 | MS.gene032325:intron | 30.0% | |
| GAAAATTCTCTATTACCTAG+AGG | + | chr8.2:48252501-48252520 | None:intergenic | 30.0% | |
| GATGCAGTGAAAACATTATA+TGG | - | chr8.2:48251927-48251946 | MS.gene032325:CDS | 30.0% | |
| TATATGACCTTCTCTCTAAA+CGG | + | chr8.2:48251244-48251263 | None:intergenic | 30.0% | |
| TATTATGGTATGTTGCTAGT+TGG | - | chr8.2:48252301-48252320 | MS.gene032325:intron | 30.0% | |
| TGTTACTGCAAGTAATATTC+CGG | + | chr8.2:48253390-48253409 | None:intergenic | 30.0% | |
| ! | AATCAGTAAAGTGTTTGAAG+TGG | + | chr8.2:48252997-48253016 | None:intergenic | 30.0% |
| ! | CTGTTCTAGTTATCAACAAA+TGG | + | chr8.2:48252024-48252043 | None:intergenic | 30.0% |
| ! | CTTGGAAGTATATCACAATT+AGG | + | chr8.2:48252129-48252148 | None:intergenic | 30.0% |
| !! | ACAATCATTTTTCAACTTGC+AGG | - | chr8.2:48253217-48253236 | MS.gene032325:CDS | 30.0% |
| !!! | AATCCAAGTTTTAGAGAACA+AGG | + | chr8.2:48252732-48252751 | None:intergenic | 30.0% |
| !!! | CAGGTAGTAGAGTTTTATTA+TGG | - | chr8.2:48252286-48252305 | MS.gene032325:intron | 30.0% |
| AAAACCAATCAGTTCACTCA+TGG | + | chr8.2:48253173-48253192 | None:intergenic | 35.0% | |
| AAAACTTGGATTGAAGTCTC+TGG | - | chr8.2:48252740-48252759 | MS.gene032325:intron | 35.0% | |
| AAATGGAAGGAATCTGAGTA+TGG | - | chr8.2:48252425-48252444 | MS.gene032325:CDS | 35.0% | |
| ATAACACGCATCCAATAGAA+TGG | + | chr8.2:48251346-48251365 | None:intergenic | 35.0% | |
| ATGCTGACAACATAAACACA+AGG | + | chr8.2:48252706-48252725 | None:intergenic | 35.0% | |
| CTTCAAAAAGGCTATGGTTT+GGG | - | chr8.2:48251770-48251789 | MS.gene032325:intron | 35.0% | |
| GAAGTAGAGATTGGAAACAA+GGG | + | chr8.2:48252260-48252279 | None:intergenic | 35.0% | |
| GAGGTGTAAAACAGTTTGAT+TGG | + | chr8.2:48252211-48252230 | None:intergenic | 35.0% | |
| TAAGGAAGAGTTGTCTCATT+TGG | - | chr8.2:48251905-48251924 | MS.gene032325:CDS | 35.0% | |
| TATTCATTGCCACCAATATC+TGG | - | chr8.2:48251807-48251826 | MS.gene032325:intron | 35.0% | |
| TCAGGAAGGAATGATAGAAA+TGG | + | chr8.2:48251196-48251215 | None:intergenic | 35.0% | |
| TGAAGTAGAGATTGGAAACA+AGG | + | chr8.2:48252261-48252280 | None:intergenic | 35.0% | |
| TTAGATGAGCTCCTTCAAAA+AGG | - | chr8.2:48251758-48251777 | MS.gene032325:intron | 35.0% | |
| ! | GTTTTACAGCTTAGCTGATA+TGG | - | chr8.2:48252652-48252671 | MS.gene032325:CDS | 35.0% |
| ! | TATGTTCTGTCTGGAATGTA+CGG | - | chr8.2:48251656-48251675 | MS.gene032325:intron | 35.0% |
| ! | TTAGGGTACTTCACTTAGTA+AGG | - | chr8.2:48251170-48251189 | MS.gene032325:CDS | 35.0% |
| !! | ACAGTATTGGCAGATTTCAT+GGG | - | chr8.2:48253347-48253366 | MS.gene032325:CDS | 35.0% |
| !! | GTACTTTGAGACATTTGAGA+AGG | - | chr8.2:48253421-48253440 | MS.gene032325:CDS | 35.0% |
| !! | GTTGATAACTAGAACAGACA+AGG | - | chr8.2:48252027-48252046 | MS.gene032325:intron | 35.0% |
| !! | TGCAGTTGATAACTGTCTTA+AGG | - | chr8.2:48253104-48253123 | MS.gene032325:intron | 35.0% |
| !! | TTTTGTTTAGCAGTTGCAAC+AGG | + | chr8.2:48251857-48251876 | None:intergenic | 35.0% |
| AAATTTGATTCCCGATGACC+AGG | + | chr8.2:48253260-48253279 | None:intergenic | 40.0% | |
| AAGGGCAGACTGAAGAATAA+TGG | + | chr8.2:48252242-48252261 | None:intergenic | 40.0% | |
| AAGTCCATGAGTGAACTGAT+TGG | - | chr8.2:48253166-48253185 | MS.gene032325:CDS | 40.0% | |
| AATCTGTACCTTCAACTGCT+TGG | + | chr8.2:48252786-48252805 | None:intergenic | 40.0% | |
| ACAAGACCAGAAGTGACAAT+GGG | + | chr8.2:48251412-48251431 | None:intergenic | 40.0% | |
| ACACAAGGTAGAACAATGCA+TGG | + | chr8.2:48252691-48252710 | None:intergenic | 40.0% | |
| ACTATATAACTGCACCCTCT+AGG | - | chr8.2:48252483-48252502 | MS.gene032325:CDS | 40.0% | |
| AGGGCAGACTGAAGAATAAT+GGG | + | chr8.2:48252241-48252260 | None:intergenic | 40.0% | |
| AGGTAGAACAATGCATGGAA+AGG | + | chr8.2:48252686-48252705 | None:intergenic | 40.0% | |
| CAACTTGCAGGAACAACAAA+TGG | - | chr8.2:48253229-48253248 | MS.gene032325:CDS | 40.0% | |
| CAATCTCTACTTCATTTCCC+AGG | - | chr8.2:48252267-48252286 | MS.gene032325:intron | 40.0% | |
| CCTTCAAAAAGGCTATGGTT+TGG | - | chr8.2:48251769-48251788 | MS.gene032325:intron | 40.0% | |
| CTGCTACACAGAAAATACAG+TGG | - | chr8.2:48252377-48252396 | MS.gene032325:CDS | 40.0% | |
| CTGGGAAATGAAGTAGAGAT+TGG | + | chr8.2:48252269-48252288 | None:intergenic | 40.0% | |
| GAAATCTGCCAATACTGTCA+GGG | + | chr8.2:48253345-48253364 | None:intergenic | 40.0% | |
| GAACAATGCATGGAAAGGAT+TGG | + | chr8.2:48252681-48252700 | None:intergenic | 40.0% | |
| GCATTTGGAGGAATGTGTAT+TGG | - | chr8.2:48253317-48253336 | MS.gene032325:CDS | 40.0% | |
| GTACATTCCAGACAGAACAT+AGG | + | chr8.2:48251657-48251676 | None:intergenic | 40.0% | |
| TACAAGACCAGAAGTGACAA+TGG | + | chr8.2:48251413-48251432 | None:intergenic | 40.0% | |
| TATGGAATACACTCGACAAC+AGG | - | chr8.2:48251313-48251332 | MS.gene032325:CDS | 40.0% | |
| TGAAATCTGCCAATACTGTC+AGG | + | chr8.2:48253346-48253365 | None:intergenic | 40.0% | |
| TTACTCTTTGCTCCCAGAAA+CGG | - | chr8.2:48251584-48251603 | MS.gene032325:intron | 40.0% | |
| TTCAAACCGTGGAACTGTTA+TGG | - | chr8.2:48251372-48251391 | MS.gene032325:CDS | 40.0% | |
| TTGTGAATCTGTTGGGCAAA+TGG | - | chr8.2:48252408-48252427 | MS.gene032325:CDS | 40.0% | |
| ! | AAATGGTAATGCCTGGTCAT+CGG | - | chr8.2:48253246-48253265 | MS.gene032325:CDS | 40.0% |
| ! | CCAAACCATAGCCTTTTTGA+AGG | + | chr8.2:48251772-48251791 | None:intergenic | 40.0% |
| ! | GAACAACAAATGGTAATGCC+TGG | - | chr8.2:48253239-48253258 | MS.gene032325:CDS | 40.0% |
| ! | TGACATTGGGAAGATTTTGC+CGG | + | chr8.2:48252078-48252097 | None:intergenic | 40.0% |
| !! | AAGAATAATGGGCATGTTGG+AGG | + | chr8.2:48252230-48252249 | None:intergenic | 40.0% |
| !! | CTGAAGAATAATGGGCATGT+TGG | + | chr8.2:48252233-48252252 | None:intergenic | 40.0% |
| !! | GACAGTATTGGCAGATTTCA+TGG | - | chr8.2:48253346-48253365 | MS.gene032325:CDS | 40.0% |
| !! | GTGCCTTGTTCTCTAAAACT+TGG | - | chr8.2:48252726-48252745 | MS.gene032325:intron | 40.0% |
| !!! | TGGTCTTGTAATGCAGCTTT+TGG | - | chr8.2:48251423-48251442 | MS.gene032325:intron | 40.0% |
| AAAAGAGCTGGAGGATGATG+AGG | + | chr8.2:48251715-48251734 | None:intergenic | 45.0% | |
| AAGACCAGAAGTGACAATGG+GGG | + | chr8.2:48251410-48251429 | None:intergenic | 45.0% | |
| AAGGAATCTGAGTATGGAGG+TGG | - | chr8.2:48252431-48252450 | MS.gene032325:CDS | 45.0% | |
| ACAACCATTAACAGTGGTCG+GGG | - | chr8.2:48251965-48251984 | MS.gene032325:intron | 45.0% | |
| AGATGTTGCCAAGCAGTTGA+AGG | - | chr8.2:48252775-48252794 | MS.gene032325:intron | 45.0% | |
| AGCCAGCAGATTTGTGACAT+TGG | + | chr8.2:48252092-48252111 | None:intergenic | 45.0% | |
| AGTCCCACAACCATTAACAG+TGG | - | chr8.2:48251959-48251978 | MS.gene032325:intron | 45.0% | |
| CAAGACCAGAAGTGACAATG+GGG | + | chr8.2:48251411-48251430 | None:intergenic | 45.0% | |
| CAAGCTCCATAACAGTTCCA+CGG | + | chr8.2:48251381-48251400 | None:intergenic | 45.0% | |
| CACAACCATTAACAGTGGTC+GGG | - | chr8.2:48251964-48251983 | MS.gene032325:intron | 45.0% | |
| CAGCAGCAGTGGGAATATAT+CGG | + | chr8.2:48253298-48253317 | None:intergenic | 45.0% | |
| CAGGTGCAGATCCATTCTAT+TGG | - | chr8.2:48251332-48251351 | MS.gene032325:CDS | 45.0% | |
| CCACAACCATTAACAGTGGT+CGG | - | chr8.2:48251963-48251982 | MS.gene032325:intron | 45.0% | |
| CGACCACTGTTAATGGTTGT+GGG | + | chr8.2:48251965-48251984 | None:intergenic | 45.0% | |
| GAATCTGTTGGGCAAATGGA+AGG | - | chr8.2:48252412-48252431 | MS.gene032325:CDS | 45.0% | |
| GAGCTCCTTCAAAAAGGCTA+TGG | - | chr8.2:48251764-48251783 | MS.gene032325:intron | 45.0% | |
| GCAGATTTCATGGGTGCAAT+TGG | - | chr8.2:48253356-48253375 | MS.gene032325:CDS | 45.0% | |
| GCCAGCAGATTTGTGACATT+GGG | + | chr8.2:48252091-48252110 | None:intergenic | 45.0% | |
| GTCGAGTGTATTCCATACAG+AGG | + | chr8.2:48251310-48251329 | None:intergenic | 45.0% | |
| GTTATCCTTGCTTCAAACCG+TGG | - | chr8.2:48251361-48251380 | MS.gene032325:CDS | 45.0% | |
| TAGTATGCAATGCCACCAAC+AGG | + | chr8.2:48252467-48252486 | None:intergenic | 45.0% | |
| TCCCAATGTCACAAATCTGC+TGG | - | chr8.2:48252087-48252106 | MS.gene032325:intron | 45.0% | |
| TGATACCGGCAAAAAAGAGC+TGG | + | chr8.2:48251727-48251746 | None:intergenic | 45.0% | |
| TGCAAGTAATATTCCGGTCC+CGG | + | chr8.2:48253384-48253403 | None:intergenic | 45.0% | |
| TGGAAGGAATCTGAGTATGG+AGG | - | chr8.2:48252428-48252447 | MS.gene032325:CDS | 45.0% | |
| TGTAGTCAGCTTCCTCTGTA+TGG | - | chr8.2:48251295-48251314 | MS.gene032325:CDS | 45.0% | |
| ! | AAAGGCTATGGTTTGGGATC+TGG | - | chr8.2:48251776-48251795 | MS.gene032325:intron | 45.0% |
| ! | AATGGTAATGCCTGGTCATC+GGG | - | chr8.2:48253247-48253266 | MS.gene032325:CDS | 45.0% |
| ! | CATCTTGATAGCTGTTGGAG+AGG | - | chr8.2:48251625-48251644 | MS.gene032325:intron | 45.0% |
| ! | CTTGGCATCTTGATAGCTGT+TGG | - | chr8.2:48251620-48251639 | MS.gene032325:intron | 45.0% |
| ! | CTTGTAATGCAGCTTTTGGC+TGG | - | chr8.2:48251427-48251446 | MS.gene032325:intron | 45.0% |
| ! | TATTGGTGCCCTGACAGTAT+TGG | - | chr8.2:48253334-48253353 | MS.gene032325:CDS | 45.0% |
| ! | TCTGGAATGTACGGTAGTGT+AGG | - | chr8.2:48251665-48251684 | MS.gene032325:intron | 45.0% |
| ! | TTCATGGGTGCAATTGGTTC+CGG | - | chr8.2:48253362-48253381 | MS.gene032325:CDS | 45.0% |
| !! | GAAAGTGCCGTTTAGAGAGA+AGG | - | chr8.2:48251234-48251253 | MS.gene032325:CDS | 45.0% |
| !!! | ATCCTCCAGCTCTTTTTTGC+CGG | - | chr8.2:48251719-48251738 | MS.gene032325:intron | 45.0% |
| AAACGGCACTTTCCTGTCTG+CGG | + | chr8.2:48251227-48251246 | None:intergenic | 50.0% | |
| AACGGTGCACAGAAGCTACT+TGG | - | chr8.2:48251602-48251621 | MS.gene032325:intron | 50.0% | |
| ACCAAAGAAACCAAGCTCGC+TGG | + | chr8.2:48253453-48253472 | None:intergenic | 50.0% | |
| ACCTTACAGGCAAAACCACG+CGG | + | chr8.2:48252156-48252175 | None:intergenic | 50.0% | |
| AGCTTCTGTGCACCGTTTCT+GGG | + | chr8.2:48251599-48251618 | None:intergenic | 50.0% | |
| ATACTTCCAAGGTTTCCGCG+TGG | - | chr8.2:48252138-48252157 | MS.gene032325:CDS | 50.0% | |
| ATATGAACCCTGCTGTCCAC+GGG | + | chr8.2:48252188-48252207 | None:intergenic | 50.0% | |
| ATTCCCACTGCTGCTGCATT+TGG | - | chr8.2:48253302-48253321 | MS.gene032325:CDS | 50.0% | |
| CCGACCACTGTTAATGGTTG+TGG | + | chr8.2:48251966-48251985 | None:intergenic | 50.0% | |
| CCGGTAAAATGCTTCCCGAA+GGG | + | chr8.2:48252059-48252078 | None:intergenic | 50.0% | |
| CGGGCATTCTTTGACCTTAC+AGG | + | chr8.2:48252169-48252188 | None:intergenic | 50.0% | |
| CGTGGAACTGTTATGGAGCT+TGG | - | chr8.2:48251379-48251398 | MS.gene032325:intron | 50.0% | |
| GATATGAACCCTGCTGTCCA+CGG | + | chr8.2:48252189-48252208 | None:intergenic | 50.0% | |
| GCTGTTGCCTATGTTCTGTC+TGG | - | chr8.2:48251647-48251666 | MS.gene032325:intron | 50.0% | |
| GGTCACTCTATTCCTGTTGG+TGG | - | chr8.2:48252452-48252471 | MS.gene032325:CDS | 50.0% | |
| GGTGGTCACTCTATTCCTGT+TGG | - | chr8.2:48252449-48252468 | MS.gene032325:CDS | 50.0% | |
| GTAAGGTCAAAGAATGCCCG+TGG | - | chr8.2:48252169-48252188 | MS.gene032325:CDS | 50.0% | |
| TACCGGCAAAAAAGAGCTGG+AGG | + | chr8.2:48251724-48251743 | None:intergenic | 50.0% | |
| TAGCTTCTGTGCACCGTTTC+TGG | + | chr8.2:48251600-48251619 | None:intergenic | 50.0% | |
| ! | ATCACCCCCATTGTCACTTC+TGG | - | chr8.2:48251403-48251422 | MS.gene032325:intron | 50.0% |
| ! | CAGTTCCACGGTTTGAAGCA+AGG | + | chr8.2:48251369-48251388 | None:intergenic | 50.0% |
| ! | TCATGGGTGCAATTGGTTCC+GGG | - | chr8.2:48253363-48253382 | MS.gene032325:CDS | 50.0% |
| !!! | CCCTTCGGGAAGCATTTTAC+CGG | - | chr8.2:48252056-48252075 | MS.gene032325:intron | 50.0% |
| AAAGAATGCCCGTGGACAGC+AGG | - | chr8.2:48252177-48252196 | MS.gene032325:CDS | 55.0% | |
| AAGAATGCCCGTGGACAGCA+GGG | - | chr8.2:48252178-48252197 | MS.gene032325:CDS | 55.0% | |
| AAGGAAAGAGCCAGCGAGCT+TGG | - | chr8.2:48253440-48253459 | MS.gene032325:CDS | 55.0% | |
| AGACAAGGTTCGTGCCCTTC+GGG | - | chr8.2:48252042-48252061 | MS.gene032325:intron | 55.0% | |
| AGCTCCCCGACCACTGTTAA+TGG | + | chr8.2:48251972-48251991 | None:intergenic | 55.0% | |
| AGTCGACAACAATGTCCGCG+AGG | - | chr8.2:48251465-48251484 | MS.gene032325:intron | 55.0% | |
| AGTGTAGGCCAGCTTGGAGT+GGG | - | chr8.2:48251680-48251699 | MS.gene032325:intron | 55.0% | |
| CAGACAAGGTTCGTGCCCTT+CGG | - | chr8.2:48252041-48252060 | MS.gene032325:intron | 55.0% | |
| CCTCCAAATGCAGCAGCAGT+GGG | + | chr8.2:48253308-48253327 | None:intergenic | 55.0% | |
| CTGAAGTTCAGACCGCAGAC+AGG | - | chr8.2:48251212-48251231 | MS.gene032325:CDS | 55.0% | |
| CTGCGGTCTGAACTTCAGGA+AGG | + | chr8.2:48251210-48251229 | None:intergenic | 55.0% | |
| CTGTCTGCGGTCTGAACTTC+AGG | + | chr8.2:48251214-48251233 | None:intergenic | 55.0% | |
| GAGCTGGAGGATGATGAGGA+TGG | + | chr8.2:48251711-48251730 | None:intergenic | 55.0% | |
| GCAAAACCACGCGGAAACCT+TGG | + | chr8.2:48252147-48252166 | None:intergenic | 55.0% | |
| GCCAGCGAGCTTGGTTTCTT+TGG | - | chr8.2:48253449-48253468 | MS.gene032325:CDS | 55.0% | |
| GCCGGTAAAATGCTTCCCGA+AGG | + | chr8.2:48252060-48252079 | None:intergenic | 55.0% | |
| TACGGTAGTGTAGGCCAGCT+TGG | - | chr8.2:48251674-48251693 | MS.gene032325:intron | 55.0% | |
| TAGTGTAGGCCAGCTTGGAG+TGG | - | chr8.2:48251679-48251698 | MS.gene032325:intron | 55.0% | |
| TCCTCCAAATGCAGCAGCAG+TGG | + | chr8.2:48253309-48253328 | None:intergenic | 55.0% | |
| TGGCATTTCCCACTCCAAGC+TGG | + | chr8.2:48251691-48251710 | None:intergenic | 55.0% | |
| ! | ACAAGAGAGCACGATCCTCG+CGG | + | chr8.2:48251483-48251502 | None:intergenic | 55.0% |
| !! | TCCGCGTGGTTTTGCCTGTA+AGG | - | chr8.2:48252152-48252171 | MS.gene032325:CDS | 55.0% |
| CCCACTGCTGCTGCATTTGG+AGG | - | chr8.2:48253305-48253324 | MS.gene032325:CDS | 60.0% | |
| GGTCGGGGAGCTGAGTTTGA+GGG | - | chr8.2:48251980-48251999 | MS.gene032325:intron | 60.0% | |
| TGGTCGGGGAGCTGAGTTTG+AGG | - | chr8.2:48251979-48251998 | MS.gene032325:intron | 60.0% | |
| ! | GGTGCAATTGGTTCCGGGAC+CGG | - | chr8.2:48253368-48253387 | MS.gene032325:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 48251157 | 48253478 | 48251157 | ID=MS.gene032325 |
| chr8.2 | mRNA | 48251157 | 48253478 | 48251157 | ID=MS.gene032325.t1;Parent=MS.gene032325 |
| chr8.2 | exon | 48253135 | 48253478 | 48253135 | ID=MS.gene032325.t1.exon1;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48253135 | 48253478 | 48253135 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| chr8.2 | exon | 48252807 | 48253034 | 48252807 | ID=MS.gene032325.t1.exon2;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48252807 | 48253034 | 48252807 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| chr8.2 | exon | 48252347 | 48252701 | 48252347 | ID=MS.gene032325.t1.exon3;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48252347 | 48252701 | 48252347 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| chr8.2 | exon | 48252131 | 48252258 | 48252131 | ID=MS.gene032325.t1.exon4;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48252131 | 48252258 | 48252131 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| chr8.2 | exon | 48251839 | 48251974 | 48251839 | ID=MS.gene032325.t1.exon5;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48251839 | 48251974 | 48251839 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| chr8.2 | exon | 48251157 | 48251396 | 48251157 | ID=MS.gene032325.t1.exon6;Parent=MS.gene032325.t1 |
| chr8.2 | CDS | 48251157 | 48251396 | 48251157 | ID=cds.MS.gene032325.t1;Parent=MS.gene032325.t1 |
| Gene Sequence |
| Protein sequence |
