Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38994.t1 | XP_003628446.1 | 100 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 1.00E-264 | 922.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38994.t1 | Q54XK2 | 72.5 | 472 | 129 | 1 | 4 | 475 | 2 | 472 | 4.5e-197 | 688.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38994.t1 | G7LBX9 | 100.0 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 7.3e-265 | 922.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38994 | MS.gene32242 | PPI |
| MS.gene38994 | MS.gene032325 | PPI |
| MS.gene38994 | MS.gene89613 | PPI |
| MS.gene38994 | MS.gene02479 | PPI |
| MS.gene38994 | MS.gene37094 | PPI |
| MS.gene02479 | MS.gene38994 | PPI |
| MS.gene38994 | MS.gene007853 | PPI |
| MS.gene38994 | MS.gene007852 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38994.t1 | MTR_8g058330 | 100.000 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 0.0 | 964 |
| MS.gene38994.t1 | MTR_8g076770 | 99.580 | 476 | 2 | 0 | 1 | 476 | 1 | 476 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38994.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene38994.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene38994.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene38994.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene38994.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene38994.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene38994.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene38994.t1 | AT1G78720 | 90.526 | 475 | 42 | 2 | 1 | 475 | 1 | 472 | 0.0 | 879 |
Find 134 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGCCTATGTTCTTTC+TGG | 0.132994 | 8.4:-48676128 | MS.gene38994:CDS |
| GTAAGATGGGTGGTGGGTTT+AGG | 0.171243 | 8.4:-48676645 | None:intergenic |
| CGGGCATTCTTTGACCTTAC+AGG | 0.191772 | 8.4:+48675608 | None:intergenic |
| AGCTCCCCGACCACTGTTAA+TGG | 0.203929 | 8.4:+48675805 | None:intergenic |
| GATGCAGTGAAAACATTATA+TGG | 0.228906 | 8.4:-48675847 | MS.gene38994:intron |
| TAAGATGGGTGGTGGGTTTA+GGG | 0.278239 | 8.4:-48676644 | None:intergenic |
| CTGTCCGCGGTCTGAACTTC+AGG | 0.283558 | 8.4:+48676586 | None:intergenic |
| GCCAGCGAGCTTGGTTTCTT+TGG | 0.285931 | 8.4:-48674323 | MS.gene38994:CDS |
| TTCATGGGTGCAATTGGTTC+CGG | 0.294173 | 8.4:-48674410 | MS.gene38994:CDS |
| ATTCCCACTGCTGCTGCATT+TGG | 0.313275 | 8.4:-48674470 | MS.gene38994:CDS |
| CTTGGAAGTATATCACAATT+AGG | 0.332365 | 8.4:+48675648 | None:intergenic |
| TAATAATAATTACCAGATAT+TGG | 0.334766 | 8.4:+48675956 | None:intergenic |
| TATTCATTGCCACCAATATC+TGG | 0.338652 | 8.4:-48675968 | MS.gene38994:intron |
| GACAGTATTGGCAGATTTCA+TGG | 0.346559 | 8.4:-48674426 | MS.gene38994:CDS |
| TGGTCTTGTAATGCAGCTTT+TGG | 0.346972 | 8.4:-48676374 | MS.gene38994:CDS |
| AAGAGCAGACTGAAGAATAA+TGG | 0.359294 | 8.4:+48675535 | None:intergenic |
| GAGGTGTAAAACAGTTTGAT+TGG | 0.363102 | 8.4:+48675566 | None:intergenic |
| TCATGGGTGCAATTGGTTCC+GGG | 0.364241 | 8.4:-48674409 | MS.gene38994:CDS |
| AAAGGCTATGGTTTGGGATC+TGG | 0.365013 | 8.4:-48675999 | MS.gene38994:CDS |
| TTAGATGAGCTCCTTCAAAA+AGG | 0.368354 | 8.4:-48676017 | MS.gene38994:CDS |
| TGTAGTCAGCTTCCTCTGTA+TGG | 0.391279 | 8.4:-48676502 | MS.gene38994:CDS |
| TTCAAACCGTGGAACTGTTA+TGG | 0.394615 | 8.4:-48676425 | MS.gene38994:CDS |
| GCAGATTTCATGGGTGCAAT+TGG | 0.395146 | 8.4:-48674416 | MS.gene38994:CDS |
| TGTTACTGCAAGTAATATTC+CGG | 0.397434 | 8.4:+48674385 | None:intergenic |
| CCGACCACTGTTAATGGTTG+TGG | 0.403048 | 8.4:+48675811 | None:intergenic |
| TTAGGGTACTTCACTTAGTA+AGG | 0.406793 | 8.4:-48676627 | MS.gene38994:CDS |
| CAACTTGCAGGAACAACAAA+TGG | 0.409211 | 8.4:-48674543 | MS.gene38994:intron |
| TATGTTCTTTCTGGAATGTA+TGG | 0.413955 | 8.4:-48676119 | MS.gene38994:CDS |
| TATATAACCTTCTCTCTAAA+CGG | 0.415312 | 8.4:+48676556 | None:intergenic |
| CCCACTGCTGCTGCATTTGG+AGG | 0.416693 | 8.4:-48674467 | MS.gene38994:CDS |
| GTGCCTTGTTCTCTAAAACT+TGG | 0.421361 | 8.4:-48675048 | MS.gene38994:CDS |
| AATGGTAATGCCTGGTCATC+GGG | 0.426397 | 8.4:-48674525 | MS.gene38994:CDS |
| CAGACAAGGTTCGTGCCCTT+AGG | 0.428797 | 8.4:-48675733 | MS.gene38994:CDS |
| AAAGAATGCCCGTGGACAGC+AGG | 0.432758 | 8.4:-48675597 | MS.gene38994:CDS |
| AAGGAAAGAGCCAGCGAGCT+TGG | 0.436512 | 8.4:-48674332 | MS.gene38994:CDS |
| CTGGGAAATGAAGTAGAGAT+TGG | 0.437679 | 8.4:+48675508 | None:intergenic |
| AGAGCAGACTGAAGAATAAT+GGG | 0.438369 | 8.4:+48675536 | None:intergenic |
| TTGTGAATCTGTTGGGCAAA+TGG | 0.440455 | 8.4:-48675366 | MS.gene38994:CDS |
| TGAAATCTGCCAATACTGTC+AGG | 0.442633 | 8.4:+48674429 | None:intergenic |
| TATTCTGGTAAGATGGGTGG+TGG | 0.445656 | 8.4:-48676652 | None:intergenic |
| GCTAGCAGATTTGTGACATT+GGG | 0.446952 | 8.4:+48675686 | None:intergenic |
| CGTGGAACTGTTATGGAGCT+TGG | 0.452315 | 8.4:-48676418 | MS.gene38994:CDS |
| AGACAAGGTTCGTGCCCTTA+GGG | 0.456049 | 8.4:-48675732 | MS.gene38994:CDS |
| AAAACTTGGATTGAAGTCTC+TGG | 0.456476 | 8.4:-48675034 | MS.gene38994:CDS |
| CTTGGCATCTTGATAGCTGT+TGG | 0.461242 | 8.4:-48676155 | MS.gene38994:CDS |
| GGTGCAATTGGTTCCGGGAC+CGG | 0.461353 | 8.4:-48674404 | MS.gene38994:CDS |
| AAAAGAGCTGGAGGATGATA+AGG | 0.461663 | 8.4:+48676063 | None:intergenic |
| CAGGTGCAGATCCATTCTAT+TGG | 0.462335 | 8.4:-48676465 | MS.gene38994:CDS |
| CACAACCATTAACAGTGGTC+GGG | 0.464038 | 8.4:-48675810 | MS.gene38994:CDS |
| CGACCACTGTTAATGGTTGT+GGG | 0.480413 | 8.4:+48675812 | None:intergenic |
| TATGGAATACACTCGACAAC+AGG | 0.481173 | 8.4:-48676484 | MS.gene38994:CDS |
| TAGTATGCAATGCCACCAAC+AGG | 0.483522 | 8.4:+48675310 | None:intergenic |
| TGGTCGGGGAGCTGAATTTG+AGG | 0.485535 | 8.4:-48675795 | MS.gene38994:CDS |
| CTGTTCTAGTAATCAACAAA+TGG | 0.485839 | 8.4:+48675753 | None:intergenic |
| CAGCAGCAGTGGGAATATAT+CGG | 0.486111 | 8.4:+48674477 | None:intergenic |
| TCAGGAAGGAATGATAGAAA+TGG | 0.489436 | 8.4:+48676604 | None:intergenic |
| AAATGGAAGGAATCTGAGTA+TGG | 0.491085 | 8.4:-48675349 | MS.gene38994:CDS |
| AGATGTTGCCAAGCAGTTGA+AGG | 0.492024 | 8.4:-48674999 | MS.gene38994:intron |
| GCAAAACCACACGGAAACCT+TGG | 0.494750 | 8.4:+48675630 | None:intergenic |
| ACAAGACCAGAAGTGACAAT+GGG | 0.497571 | 8.4:+48676388 | None:intergenic |
| AACTTCATTGTGAATCTGTT+GGG | 0.502266 | 8.4:-48675373 | MS.gene38994:CDS |
| AACGGTGCACAGAAGCTACT+TGG | 0.503218 | 8.4:-48676173 | MS.gene38994:CDS |
| GCATTTGGAGGAATGTGTAT+TGG | 0.503549 | 8.4:-48674455 | MS.gene38994:CDS |
| AAATTTGATTCCCGATGACC+AGG | 0.504394 | 8.4:+48674515 | None:intergenic |
| TATGGTAGTGTAGGCCAGCT+TGG | 0.505753 | 8.4:-48676101 | MS.gene38994:CDS |
| AAATGGTAATGCCTGGTCAT+CGG | 0.505999 | 8.4:-48674526 | MS.gene38994:CDS |
| GCCGGTAAAATGCTTCCCTA+AGG | 0.507430 | 8.4:+48675717 | None:intergenic |
| ATAACACGCATCCAATAGAA+TGG | 0.515174 | 8.4:+48676454 | None:intergenic |
| CTGAAGAATAATGGGCATGT+TGG | 0.515561 | 8.4:+48675544 | None:intergenic |
| AGCTAGCAGATTTGTGACAT+TGG | 0.520122 | 8.4:+48675685 | None:intergenic |
| TGGCATTTCCCACTCCAAGC+TGG | 0.520195 | 8.4:+48676087 | None:intergenic |
| ACCAAAGAAACCAAGCTCGC+TGG | 0.523159 | 8.4:+48674322 | None:intergenic |
| TCCTCCAAATGCAGCAGCAG+TGG | 0.526488 | 8.4:+48674466 | None:intergenic |
| TGCAAGTAATATTCCGGTCC+CGG | 0.529370 | 8.4:+48674391 | None:intergenic |
| CAATCTCTACTTCATTTCCC+AGG | 0.533946 | 8.4:-48675507 | MS.gene38994:intron |
| CTAATTGTGATATACTTCCA+AGG | 0.539046 | 8.4:-48675647 | MS.gene38994:CDS |
| GGTCACTCTATTCCTGTTGG+TGG | 0.542254 | 8.4:-48675322 | MS.gene38994:CDS |
| CAGTTCCACGGTTTGAAGCA+AGG | 0.542857 | 8.4:+48676431 | None:intergenic |
| CTGAAGTTCAGACCGCGGAC+AGG | 0.547046 | 8.4:-48676585 | MS.gene38994:CDS |
| TAAACATATGACGATGATAC+CGG | 0.548363 | 8.4:+48676037 | None:intergenic |
| AAACTTCATTGTGAATCTGT+TGG | 0.548669 | 8.4:-48675374 | MS.gene38994:CDS |
| ACAGTATTGGCAGATTTCAT+GGG | 0.552268 | 8.4:-48674425 | MS.gene38994:CDS |
| GAACAATGCATGGAAAGGAT+TGG | 0.553602 | 8.4:+48675096 | None:intergenic |
| CCACAACCATTAACAGTGGT+CGG | 0.553676 | 8.4:-48675811 | MS.gene38994:CDS |
| ACTATATAACTGCACCCTCT+AGG | 0.554045 | 8.4:-48675291 | MS.gene38994:intron |
| GGTGGTCACTCTATTCCTGT+TGG | 0.554775 | 8.4:-48675325 | MS.gene38994:CDS |
| GAACAACAAATGGTAATGCC+TGG | 0.556580 | 8.4:-48674533 | MS.gene38994:CDS |
| GTACTTTGAGACATTTGAGA+AGG | 0.557787 | 8.4:-48674351 | MS.gene38994:CDS |
| AATCTGTACCTTCAACTGCT+TGG | 0.557872 | 8.4:+48674991 | None:intergenic |
| AGTGTAGGCCAGCTTGGAGT+GGG | 0.558950 | 8.4:-48676095 | MS.gene38994:CDS |
| AAGAATAATGGGCATGTTGG+AGG | 0.559009 | 8.4:+48675547 | None:intergenic |
| GGTCGGGGAGCTGAATTTGA+GGG | 0.561143 | 8.4:-48675794 | MS.gene38994:CDS |
| GATATGAACCCTGCTGTCCA+CGG | 0.564388 | 8.4:+48675588 | None:intergenic |
| GAAAGTGCCGTTTAGAGAGA+AGG | 0.569270 | 8.4:-48676563 | MS.gene38994:CDS |
| CCGGTAAAATGCTTCCCTAA+GGG | 0.569426 | 8.4:+48675718 | None:intergenic |
| ATATGAACCCTGCTGTCCAC+GGG | 0.572002 | 8.4:+48675589 | None:intergenic |
| TCTGGAATGTATGGTAGTGT+AGG | 0.575875 | 8.4:-48676110 | MS.gene38994:CDS |
| AAAATTCTCTATTACCTAGA+GGG | 0.576749 | 8.4:+48675277 | None:intergenic |
| TATTGGTGCCCTGACAGTAT+TGG | 0.578050 | 8.4:-48674438 | MS.gene38994:CDS |
| TGACATTGGGAAGATTCTGC+CGG | 0.580213 | 8.4:+48675699 | None:intergenic |
| GTTATCCTTGCTTCAAACCG+TGG | 0.587811 | 8.4:-48676436 | MS.gene38994:CDS |
| ACACAAGGTAGAACAATGCA+TGG | 0.589874 | 8.4:+48675086 | None:intergenic |
| CCTCCAAATGCAGCAGCAGT+GGG | 0.591311 | 8.4:+48674467 | None:intergenic |
| ATTCTGGTAAGATGGGTGGT+GGG | 0.592675 | 8.4:-48676651 | None:intergenic |
| AGGTAGAACAATGCATGGAA+AGG | 0.595832 | 8.4:+48675091 | None:intergenic |
| ATACATTCCAGAAAGAACAT+AGG | 0.597151 | 8.4:+48676121 | None:intergenic |
| ACCTTACAGGCAAAACCACA+CGG | 0.598007 | 8.4:+48675621 | None:intergenic |
| TACAAGACCAGAAGTGACAA+TGG | 0.598549 | 8.4:+48676387 | None:intergenic |
| CAAGCTCCATAACAGTTCCA+CGG | 0.599214 | 8.4:+48676419 | None:intergenic |
| TAATAATTACCAGATATTGG+TGG | 0.605322 | 8.4:+48675959 | None:intergenic |
| AAGGAATCTGAGTATGGAGG+TGG | 0.605957 | 8.4:-48675343 | MS.gene38994:CDS |
| TAGTGTAGGCCAGCTTGGAG+TGG | 0.606241 | 8.4:-48676096 | MS.gene38994:CDS |
| CATCTTGATAGCTGTTGGAG+AGG | 0.612529 | 8.4:-48676150 | MS.gene38994:CDS |
| ACAACCATTAACAGTGGTCG+GGG | 0.617144 | 8.4:-48675809 | MS.gene38994:CDS |
| GAATCTGTTGGGCAAATGGA+AGG | 0.629594 | 8.4:-48675362 | MS.gene38994:CDS |
| GAAATCTGCCAATACTGTCA+GGG | 0.633038 | 8.4:+48674430 | None:intergenic |
| CCGCGGTCTGAACTTCAGGA+AGG | 0.633970 | 8.4:+48676590 | None:intergenic |
| ACAAGAGAGCACGATCCTCA+CGG | 0.636825 | 8.4:+48676317 | None:intergenic |
| AAGAATGCCCGTGGACAGCA+GGG | 0.641052 | 8.4:-48675596 | MS.gene38994:CDS |
| AAACGGCACTTTCCTGTCCG+CGG | 0.663801 | 8.4:+48676573 | None:intergenic |
| GTAAGGTCAAAGAATGCCCG+TGG | 0.666399 | 8.4:-48675605 | MS.gene38994:CDS |
| CTGTATTCTGGTAAGATGGG+TGG | 0.668819 | 8.4:-48676655 | None:intergenic |
| GTTGATTACTAGAACAGACA+AGG | 0.670921 | 8.4:-48675747 | MS.gene38994:CDS |
| GTCGAGTGTATTCCATACAG+AGG | 0.671262 | 8.4:+48676490 | None:intergenic |
| GAGCTGGAGGATGATAAGGA+TGG | 0.672248 | 8.4:+48676067 | None:intergenic |
| TGGAAGGAATCTGAGTATGG+AGG | 0.680500 | 8.4:-48675346 | MS.gene38994:CDS |
| CCTTCCTGAAGTTCAGACCG+CGG | 0.684240 | 8.4:-48676590 | MS.gene38994:CDS |
| ATACTTCCAAGGTTTCCGTG+TGG | 0.697491 | 8.4:-48675636 | MS.gene38994:CDS |
| AGTCCCACAACCATTAACAG+TGG | 0.707722 | 8.4:-48675815 | MS.gene38994:CDS |
| ATGCTGACAACATAAACACA+AGG | 0.717976 | 8.4:+48675071 | None:intergenic |
| CTGCTACACAGAAAATACAG+TGG | 0.721400 | 8.4:-48675397 | MS.gene38994:CDS |
| CAAGACCAGAAGTGACAATG+GGG | 0.741804 | 8.4:+48676389 | None:intergenic |
| AGTCGACAACAATGTCCGTG+AGG | 0.748642 | 8.4:-48676332 | MS.gene38994:CDS |
| AAGACCAGAAGTGACAATGG+GGG | 0.759683 | 8.4:+48676390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAACAATT+TGG | + | chr8.4:48676155-48676174 | None:intergenic | 10.0% |
| !!! | TTTAATGATATTTATTGTTT+TGG | - | chr8.4:48675784-48675803 | MS.gene38994:CDS | 10.0% |
| !! | AAAAAAATAATTTCAGCATA+TGG | + | chr8.4:48676131-48676150 | None:intergenic | 15.0% |
| !! | CTGGTAATTATTATTATTTA+TGG | - | chr8.4:48675007-48675026 | MS.gene38994:CDS | 15.0% |
| !! | GTAAAATCATATTGTTAAAA+CGG | + | chr8.4:48675526-48675545 | None:intergenic | 15.0% |
| !! | TAATAATAATTACCAGATAT+TGG | + | chr8.4:48675003-48675022 | None:intergenic | 15.0% |
| !! | TCTAATATATGAAAGTAGAT+TGG | - | chr8.4:48674729-48674748 | MS.gene38994:intron | 20.0% |
| !!! | CACTTTACTGATTATTTTTT+AGG | - | chr8.4:48676188-48676207 | MS.gene38994:intron | 20.0% |
| !!! | TATACTTTTATCTAGTACTA+AGG | - | chr8.4:48676021-48676040 | MS.gene38994:CDS | 20.0% |
| ! | AAAATTCTCTATTACCTAGA+GGG | + | chr8.4:48675682-48675701 | None:intergenic | 25.0% |
| ! | ACAAACAAGAAAAATGAAGA+GGG | + | chr8.4:48674437-48674456 | None:intergenic | 25.0% |
| ! | ATAATAAAACTCTACTACCT+GGG | + | chr8.4:48675469-48675488 | None:intergenic | 25.0% |
| ! | GGCAAAGAATATAATCTAAT+AGG | + | chr8.4:48675737-48675756 | None:intergenic | 25.0% |
| ! | TAATAATTACCAGATATTGG+TGG | + | chr8.4:48675000-48675019 | None:intergenic | 25.0% |
| ! | TACAAACAAGAAAAATGAAG+AGG | + | chr8.4:48674438-48674457 | None:intergenic | 25.0% |
| ! | TATATAACCTTCTCTCTAAA+CGG | + | chr8.4:48674403-48674422 | None:intergenic | 25.0% |
| ! | TTTAAGGAAGAATTCTCATT+TGG | - | chr8.4:48675087-48675106 | MS.gene38994:CDS | 25.0% |
| !! | TAGAGAATTTTCTATTCAGT+TGG | - | chr8.4:48675691-48675710 | MS.gene38994:CDS | 25.0% |
| !! | TATTATGGTATGTTGCTTAT+TGG | - | chr8.4:48675483-48675502 | MS.gene38994:intron | 25.0% |
| !! | TTGAAGCTTTATATCAAACT+AGG | + | chr8.4:48675758-48675777 | None:intergenic | 25.0% |
| !!! | CACTTTTTTAACACTGAAAT+TGG | - | chr8.4:48676316-48676335 | MS.gene38994:intron | 25.0% |
| !!! | GTCTGAAATTTTTATGATGA+TGG | - | chr8.4:48676242-48676261 | MS.gene38994:intron | 25.0% |
| AAACTTCATTGTGAATCTGT+TGG | - | chr8.4:48675582-48675601 | MS.gene38994:CDS | 30.0% | |
| AACTTCATTGTGAATCTGTT+GGG | - | chr8.4:48675583-48675602 | MS.gene38994:CDS | 30.0% | |
| ATAAATTACTCTTTGCTCTC+AGG | - | chr8.4:48674760-48674779 | MS.gene38994:intron | 30.0% | |
| ATACATTCCAGAAAGAACAT+AGG | + | chr8.4:48674838-48674857 | None:intergenic | 30.0% | |
| CATAATAAAACTCTACTACC+TGG | + | chr8.4:48675470-48675489 | None:intergenic | 30.0% | |
| CTAATTGTGATATACTTCCA+AGG | - | chr8.4:48675309-48675328 | MS.gene38994:CDS | 30.0% | |
| CTGTTCTAGTAATCAACAAA+TGG | + | chr8.4:48675206-48675225 | None:intergenic | 30.0% | |
| GAAAATTCTCTATTACCTAG+AGG | + | chr8.4:48675683-48675702 | None:intergenic | 30.0% | |
| GATGCAGTGAAAACATTATA+TGG | - | chr8.4:48675109-48675128 | MS.gene38994:CDS | 30.0% | |
| TAAACATATGACGATGATAC+CGG | + | chr8.4:48674922-48674941 | None:intergenic | 30.0% | |
| TGTTACTGCAAGTAATATTC+CGG | + | chr8.4:48676574-48676593 | None:intergenic | 30.0% | |
| ! | AATCAGTAAAGTGTTTGAAG+TGG | + | chr8.4:48676181-48676200 | None:intergenic | 30.0% |
| ! | ATATTTCCTGTTGAGTTTTG+TGG | - | chr8.4:48674679-48674698 | MS.gene38994:intron | 30.0% |
| ! | CTTGGAAGTATATCACAATT+AGG | + | chr8.4:48675311-48675330 | None:intergenic | 30.0% |
| !! | ACAATCATTTTTCAACTTGC+AGG | - | chr8.4:48676401-48676420 | MS.gene38994:CDS | 30.0% |
| !! | TATGTTCTTTCTGGAATGTA+TGG | - | chr8.4:48674837-48674856 | MS.gene38994:intron | 30.0% |
| !! | TTTTGTTTAGTAGTTGCAAC+AGG | + | chr8.4:48675038-48675057 | None:intergenic | 30.0% |
| !!! | AATCCAAGTTTTAGAGAACA+AGG | + | chr8.4:48675914-48675933 | None:intergenic | 30.0% |
| !!! | CAGGTAGTAGAGTTTTATTA+TGG | - | chr8.4:48675468-48675487 | MS.gene38994:intron | 30.0% |
| AAAAATGAAGAGGGAGATCA+CGG | + | chr8.4:48674428-48674447 | None:intergenic | 35.0% | |
| AAAACCAATCAGTTCACTCA+TGG | + | chr8.4:48676357-48676376 | None:intergenic | 35.0% | |
| AAAACTTGGATTGAAGTCTC+TGG | - | chr8.4:48675922-48675941 | MS.gene38994:intron | 35.0% | |
| AAATGGAAGGAATCTGAGTA+TGG | - | chr8.4:48675607-48675626 | MS.gene38994:CDS | 35.0% | |
| AAGAGCAGACTGAAGAATAA+TGG | + | chr8.4:48675424-48675443 | None:intergenic | 35.0% | |
| AGAGCAGACTGAAGAATAAT+GGG | + | chr8.4:48675423-48675442 | None:intergenic | 35.0% | |
| ATAACACGCATCCAATAGAA+TGG | + | chr8.4:48674505-48674524 | None:intergenic | 35.0% | |
| ATGCTGACAACATAAACACA+AGG | + | chr8.4:48675888-48675907 | None:intergenic | 35.0% | |
| CTTCAAAAAGGCTATGGTTT+GGG | - | chr8.4:48674951-48674970 | MS.gene38994:intron | 35.0% | |
| GAGGTGTAAAACAGTTTGAT+TGG | + | chr8.4:48675393-48675412 | None:intergenic | 35.0% | |
| GTTGATTACTAGAACAGACA+AGG | - | chr8.4:48675209-48675228 | MS.gene38994:intron | 35.0% | |
| TATTCATTGCCACCAATATC+TGG | - | chr8.4:48674988-48675007 | MS.gene38994:intron | 35.0% | |
| TCAGGAAGGAATGATAGAAA+TGG | + | chr8.4:48674355-48674374 | None:intergenic | 35.0% | |
| TTAGATGAGCTCCTTCAAAA+AGG | - | chr8.4:48674939-48674958 | MS.gene38994:intron | 35.0% | |
| ! | GTTTTACAGCTTAGCTGATA+TGG | - | chr8.4:48675834-48675853 | MS.gene38994:CDS | 35.0% |
| ! | TTAGGGTACTTCACTTAGTA+AGG | - | chr8.4:48674329-48674348 | MS.gene38994:CDS | 35.0% |
| !! | ACAGTATTGGCAGATTTCAT+GGG | - | chr8.4:48676531-48676550 | MS.gene38994:CDS | 35.0% |
| !! | GTACTTTGAGACATTTGAGA+AGG | - | chr8.4:48676605-48676624 | MS.gene38994:CDS | 35.0% |
| !! | TGCAGTTGATAACTGTCTTA+AGG | - | chr8.4:48676288-48676307 | MS.gene38994:intron | 35.0% |
| !! | TTGAGTTTTGTGGTGCAATA+TGG | - | chr8.4:48674689-48674708 | MS.gene38994:intron | 35.0% |
| AAAAGAGCTGGAGGATGATA+AGG | + | chr8.4:48674896-48674915 | None:intergenic | 40.0% | |
| AAATTTGATTCCCGATGACC+AGG | + | chr8.4:48676444-48676463 | None:intergenic | 40.0% | |
| AAGTCCATGAGTGAACTGAT+TGG | - | chr8.4:48676350-48676369 | MS.gene38994:CDS | 40.0% | |
| AATCTGTACCTTCAACTGCT+TGG | + | chr8.4:48675968-48675987 | None:intergenic | 40.0% | |
| ACAAGACCAGAAGTGACAAT+GGG | + | chr8.4:48674571-48674590 | None:intergenic | 40.0% | |
| ACACAAGGTAGAACAATGCA+TGG | + | chr8.4:48675873-48675892 | None:intergenic | 40.0% | |
| ACTATATAACTGCACCCTCT+AGG | - | chr8.4:48675665-48675684 | MS.gene38994:CDS | 40.0% | |
| AGCTAGCAGATTTGTGACAT+TGG | + | chr8.4:48675274-48675293 | None:intergenic | 40.0% | |
| AGGTAGAACAATGCATGGAA+AGG | + | chr8.4:48675868-48675887 | None:intergenic | 40.0% | |
| ATTGCACCACAAAACTCAAC+AGG | + | chr8.4:48674688-48674707 | None:intergenic | 40.0% | |
| CAACTTGCAGGAACAACAAA+TGG | - | chr8.4:48676413-48676432 | MS.gene38994:CDS | 40.0% | |
| CAATCTCTACTTCATTTCCC+AGG | - | chr8.4:48675449-48675468 | MS.gene38994:intron | 40.0% | |
| CCTTCAAAAAGGCTATGGTT+TGG | - | chr8.4:48674950-48674969 | MS.gene38994:intron | 40.0% | |
| CTGCTACACAGAAAATACAG+TGG | - | chr8.4:48675559-48675578 | MS.gene38994:CDS | 40.0% | |
| CTGGGAAATGAAGTAGAGAT+TGG | + | chr8.4:48675451-48675470 | None:intergenic | 40.0% | |
| GAAATCTGCCAATACTGTCA+GGG | + | chr8.4:48676529-48676548 | None:intergenic | 40.0% | |
| GAACAATGCATGGAAAGGAT+TGG | + | chr8.4:48675863-48675882 | None:intergenic | 40.0% | |
| GCATTTGGAGGAATGTGTAT+TGG | - | chr8.4:48676501-48676520 | MS.gene38994:CDS | 40.0% | |
| GCTAGCAGATTTGTGACATT+GGG | + | chr8.4:48675273-48675292 | None:intergenic | 40.0% | |
| TACAAGACCAGAAGTGACAA+TGG | + | chr8.4:48674572-48674591 | None:intergenic | 40.0% | |
| TATGGAATACACTCGACAAC+AGG | - | chr8.4:48674472-48674491 | MS.gene38994:CDS | 40.0% | |
| TGAAATCTGCCAATACTGTC+AGG | + | chr8.4:48676530-48676549 | None:intergenic | 40.0% | |
| TTACTCTTTGCTCTCAGGAA+CGG | - | chr8.4:48674765-48674784 | MS.gene38994:intron | 40.0% | |
| TTCAAACCGTGGAACTGTTA+TGG | - | chr8.4:48674531-48674550 | MS.gene38994:CDS | 40.0% | |
| TTGTGAATCTGTTGGGCAAA+TGG | - | chr8.4:48675590-48675609 | MS.gene38994:CDS | 40.0% | |
| ! | AAATGGTAATGCCTGGTCAT+CGG | - | chr8.4:48676430-48676449 | MS.gene38994:CDS | 40.0% |
| ! | CCAAACCATAGCCTTTTTGA+AGG | + | chr8.4:48674953-48674972 | None:intergenic | 40.0% |
| ! | GAACAACAAATGGTAATGCC+TGG | - | chr8.4:48676423-48676442 | MS.gene38994:CDS | 40.0% |
| ! | TCTGGAATGTATGGTAGTGT+AGG | - | chr8.4:48674846-48674865 | MS.gene38994:intron | 40.0% |
| !! | AAGAATAATGGGCATGTTGG+AGG | + | chr8.4:48675412-48675431 | None:intergenic | 40.0% |
| !! | AGTTTTGTGGTGCAATATGG+TGG | - | chr8.4:48674692-48674711 | MS.gene38994:intron | 40.0% |
| !! | CTGAAGAATAATGGGCATGT+TGG | + | chr8.4:48675415-48675434 | None:intergenic | 40.0% |
| !! | GACAGTATTGGCAGATTTCA+TGG | - | chr8.4:48676530-48676549 | MS.gene38994:CDS | 40.0% |
| !! | GTGCCTTGTTCTCTAAAACT+TGG | - | chr8.4:48675908-48675927 | MS.gene38994:intron | 40.0% |
| !!! | TGGTCTTGTAATGCAGCTTT+TGG | - | chr8.4:48674582-48674601 | MS.gene38994:intron | 40.0% |
| AAGACCAGAAGTGACAATGG+GGG | + | chr8.4:48674569-48674588 | None:intergenic | 45.0% | |
| AAGGAATCTGAGTATGGAGG+TGG | - | chr8.4:48675613-48675632 | MS.gene38994:CDS | 45.0% | |
| ACAACCATTAACAGTGGTCG+GGG | - | chr8.4:48675147-48675166 | MS.gene38994:intron | 45.0% | |
| ACCTTACAGGCAAAACCACA+CGG | + | chr8.4:48675338-48675357 | None:intergenic | 45.0% | |
| AGATGTTGCCAAGCAGTTGA+AGG | - | chr8.4:48675957-48675976 | MS.gene38994:intron | 45.0% | |
| AGTCCCACAACCATTAACAG+TGG | - | chr8.4:48675141-48675160 | MS.gene38994:intron | 45.0% | |
| ATACTTCCAAGGTTTCCGTG+TGG | - | chr8.4:48675320-48675339 | MS.gene38994:CDS | 45.0% | |
| CAAGACCAGAAGTGACAATG+GGG | + | chr8.4:48674570-48674589 | None:intergenic | 45.0% | |
| CAAGCTCCATAACAGTTCCA+CGG | + | chr8.4:48674540-48674559 | None:intergenic | 45.0% | |
| CACAACCATTAACAGTGGTC+GGG | - | chr8.4:48675146-48675165 | MS.gene38994:intron | 45.0% | |
| CAGCAGCAGTGGGAATATAT+CGG | + | chr8.4:48676482-48676501 | None:intergenic | 45.0% | |
| CAGGTGCAGATCCATTCTAT+TGG | - | chr8.4:48674491-48674510 | MS.gene38994:CDS | 45.0% | |
| CCACAACCATTAACAGTGGT+CGG | - | chr8.4:48675145-48675164 | MS.gene38994:intron | 45.0% | |
| CCGGTAAAATGCTTCCCTAA+GGG | + | chr8.4:48675241-48675260 | None:intergenic | 45.0% | |
| CGACCACTGTTAATGGTTGT+GGG | + | chr8.4:48675147-48675166 | None:intergenic | 45.0% | |
| GAATCTGTTGGGCAAATGGA+AGG | - | chr8.4:48675594-48675613 | MS.gene38994:CDS | 45.0% | |
| GAGCTCCTTCAAAAAGGCTA+TGG | - | chr8.4:48674945-48674964 | MS.gene38994:intron | 45.0% | |
| GCAGATTTCATGGGTGCAAT+TGG | - | chr8.4:48676540-48676559 | MS.gene38994:CDS | 45.0% | |
| GCTGTTGCCTATGTTCTTTC+TGG | - | chr8.4:48674828-48674847 | MS.gene38994:intron | 45.0% | |
| GTCGAGTGTATTCCATACAG+AGG | + | chr8.4:48674469-48674488 | None:intergenic | 45.0% | |
| GTTATCCTTGCTTCAAACCG+TGG | - | chr8.4:48674520-48674539 | MS.gene38994:CDS | 45.0% | |
| TAGTATGCAATGCCACCAAC+AGG | + | chr8.4:48675649-48675668 | None:intergenic | 45.0% | |
| TGACATTGGGAAGATTCTGC+CGG | + | chr8.4:48675260-48675279 | None:intergenic | 45.0% | |
| TGATACCGGCAAAAAAGAGC+TGG | + | chr8.4:48674908-48674927 | None:intergenic | 45.0% | |
| TGCAAGTAATATTCCGGTCC+CGG | + | chr8.4:48676568-48676587 | None:intergenic | 45.0% | |
| TGGAAGGAATCTGAGTATGG+AGG | - | chr8.4:48675610-48675629 | MS.gene38994:CDS | 45.0% | |
| TGTAGTCAGCTTCCTCTGTA+TGG | - | chr8.4:48674454-48674473 | MS.gene38994:CDS | 45.0% | |
| ! | AAAGGCTATGGTTTGGGATC+TGG | - | chr8.4:48674957-48674976 | MS.gene38994:intron | 45.0% |
| ! | AATGGTAATGCCTGGTCATC+GGG | - | chr8.4:48676431-48676450 | MS.gene38994:CDS | 45.0% |
| ! | CATCTTGATAGCTGTTGGAG+AGG | - | chr8.4:48674806-48674825 | MS.gene38994:intron | 45.0% |
| ! | CTTGGCATCTTGATAGCTGT+TGG | - | chr8.4:48674801-48674820 | MS.gene38994:intron | 45.0% |
| ! | CTTGTAATGCAGCTTTTGGC+TGG | - | chr8.4:48674586-48674605 | MS.gene38994:intron | 45.0% |
| ! | TATTGGTGCCCTGACAGTAT+TGG | - | chr8.4:48676518-48676537 | MS.gene38994:CDS | 45.0% |
| ! | TTCATGGGTGCAATTGGTTC+CGG | - | chr8.4:48676546-48676565 | MS.gene38994:CDS | 45.0% |
| !! | GAAAGTGCCGTTTAGAGAGA+AGG | - | chr8.4:48674393-48674412 | MS.gene38994:CDS | 45.0% |
| !!! | ATCCTCCAGCTCTTTTTTGC+CGG | - | chr8.4:48674900-48674919 | MS.gene38994:intron | 45.0% |
| !!! | CCCTTAGGGAAGCATTTTAC+CGG | - | chr8.4:48675238-48675257 | MS.gene38994:intron | 45.0% |
| !! | AAAAAAAAAAAAAACAATTT+GGG | + | chr8.4:48676154-48676173 | None:intergenic | 5.0% |
| !! | TATATAAAAAACAAAATTTA+AGG | - | chr8.4:48675071-48675090 | MS.gene38994:CDS | 5.0% |
| !!! | ATTTTGTTTTTTATATAAAA+AGG | + | chr8.4:48675068-48675087 | None:intergenic | 5.0% |
| AACGGTGCACAGAAGCTACT+TGG | - | chr8.4:48674783-48674802 | MS.gene38994:intron | 50.0% | |
| ACCAAAGAAACCAAGCTCGC+TGG | + | chr8.4:48676637-48676656 | None:intergenic | 50.0% | |
| AGACAAGGTTCGTGCCCTTA+GGG | - | chr8.4:48675224-48675243 | MS.gene38994:intron | 50.0% | |
| AGTCGACAACAATGTCCGTG+AGG | - | chr8.4:48674624-48674643 | MS.gene38994:intron | 50.0% | |
| ATATGAACCCTGCTGTCCAC+GGG | + | chr8.4:48675370-48675389 | None:intergenic | 50.0% | |
| ATTCCCACTGCTGCTGCATT+TGG | - | chr8.4:48676486-48676505 | MS.gene38994:CDS | 50.0% | |
| CCGACCACTGTTAATGGTTG+TGG | + | chr8.4:48675148-48675167 | None:intergenic | 50.0% | |
| CGGGCATTCTTTGACCTTAC+AGG | + | chr8.4:48675351-48675370 | None:intergenic | 50.0% | |
| CGTGGAACTGTTATGGAGCT+TGG | - | chr8.4:48674538-48674557 | MS.gene38994:intron | 50.0% | |
| GAGCTGGAGGATGATAAGGA+TGG | + | chr8.4:48674892-48674911 | None:intergenic | 50.0% | |
| GATATGAACCCTGCTGTCCA+CGG | + | chr8.4:48675371-48675390 | None:intergenic | 50.0% | |
| GCAAAACCACACGGAAACCT+TGG | + | chr8.4:48675329-48675348 | None:intergenic | 50.0% | |
| GCCGGTAAAATGCTTCCCTA+AGG | + | chr8.4:48675242-48675261 | None:intergenic | 50.0% | |
| GGTCACTCTATTCCTGTTGG+TGG | - | chr8.4:48675634-48675653 | MS.gene38994:CDS | 50.0% | |
| GGTGGTCACTCTATTCCTGT+TGG | - | chr8.4:48675631-48675650 | MS.gene38994:CDS | 50.0% | |
| GTAAGGTCAAAGAATGCCCG+TGG | - | chr8.4:48675351-48675370 | MS.gene38994:CDS | 50.0% | |
| TACCGGCAAAAAAGAGCTGG+AGG | + | chr8.4:48674905-48674924 | None:intergenic | 50.0% | |
| ! | ACAAGAGAGCACGATCCTCA+CGG | + | chr8.4:48674642-48674661 | None:intergenic | 50.0% |
| ! | ATCACCCCCATTGTCACTTC+TGG | - | chr8.4:48674562-48674581 | MS.gene38994:intron | 50.0% |
| ! | CAGTTCCACGGTTTGAAGCA+AGG | + | chr8.4:48674528-48674547 | None:intergenic | 50.0% |
| ! | TATGGTAGTGTAGGCCAGCT+TGG | - | chr8.4:48674855-48674874 | MS.gene38994:intron | 50.0% |
| ! | TCATGGGTGCAATTGGTTCC+GGG | - | chr8.4:48676547-48676566 | MS.gene38994:CDS | 50.0% |
| !! | TCCGTGTGGTTTTGCCTGTA+AGG | - | chr8.4:48675334-48675353 | MS.gene38994:CDS | 50.0% |
| AAACGGCACTTTCCTGTCCG+CGG | + | chr8.4:48674386-48674405 | None:intergenic | 55.0% | |
| AAAGAATGCCCGTGGACAGC+AGG | - | chr8.4:48675359-48675378 | MS.gene38994:CDS | 55.0% | |
| AAGAATGCCCGTGGACAGCA+GGG | - | chr8.4:48675360-48675379 | MS.gene38994:CDS | 55.0% | |
| AAGGAAAGAGCCAGCGAGCT+TGG | - | chr8.4:48676624-48676643 | MS.gene38994:CDS | 55.0% | |
| AGCTCCCCGACCACTGTTAA+TGG | + | chr8.4:48675154-48675173 | None:intergenic | 55.0% | |
| AGTGTAGGCCAGCTTGGAGT+GGG | - | chr8.4:48674861-48674880 | MS.gene38994:intron | 55.0% | |
| CAGACAAGGTTCGTGCCCTT+AGG | - | chr8.4:48675223-48675242 | MS.gene38994:intron | 55.0% | |
| CCTCCAAATGCAGCAGCAGT+GGG | + | chr8.4:48676492-48676511 | None:intergenic | 55.0% | |
| CCTTCCTGAAGTTCAGACCG+CGG | - | chr8.4:48674366-48674385 | MS.gene38994:CDS | 55.0% | |
| GCCAGCGAGCTTGGTTTCTT+TGG | - | chr8.4:48676633-48676652 | MS.gene38994:CDS | 55.0% | |
| GGTCGGGGAGCTGAATTTGA+GGG | - | chr8.4:48675162-48675181 | MS.gene38994:intron | 55.0% | |
| TAGTGTAGGCCAGCTTGGAG+TGG | - | chr8.4:48674860-48674879 | MS.gene38994:intron | 55.0% | |
| TCCTCCAAATGCAGCAGCAG+TGG | + | chr8.4:48676493-48676512 | None:intergenic | 55.0% | |
| TGGCATTTCCCACTCCAAGC+TGG | + | chr8.4:48674872-48674891 | None:intergenic | 55.0% | |
| TGGTCGGGGAGCTGAATTTG+AGG | - | chr8.4:48675161-48675180 | MS.gene38994:intron | 55.0% | |
| CCCACTGCTGCTGCATTTGG+AGG | - | chr8.4:48676489-48676508 | MS.gene38994:CDS | 60.0% | |
| CCGCGGTCTGAACTTCAGGA+AGG | + | chr8.4:48674369-48674388 | None:intergenic | 60.0% | |
| CTGAAGTTCAGACCGCGGAC+AGG | - | chr8.4:48674371-48674390 | MS.gene38994:CDS | 60.0% | |
| CTGTCCGCGGTCTGAACTTC+AGG | + | chr8.4:48674373-48674392 | None:intergenic | 60.0% | |
| ! | GGTGCAATTGGTTCCGGGAC+CGG | - | chr8.4:48676552-48676571 | MS.gene38994:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 48674316 | 48676662 | 48674316 | ID=MS.gene38994 |
| chr8.4 | mRNA | 48674316 | 48676662 | 48674316 | ID=MS.gene38994.t1;Parent=MS.gene38994 |
| chr8.4 | exon | 48676319 | 48676662 | 48676319 | ID=MS.gene38994.t1.exon1;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48676319 | 48676662 | 48676319 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| chr8.4 | exon | 48675969 | 48676196 | 48675969 | ID=MS.gene38994.t1.exon2;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48675969 | 48676196 | 48675969 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| chr8.4 | exon | 48675508 | 48675862 | 48675508 | ID=MS.gene38994.t1.exon3;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48675508 | 48675862 | 48675508 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| chr8.4 | exon | 48675292 | 48675419 | 48675292 | ID=MS.gene38994.t1.exon4;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48675292 | 48675419 | 48675292 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| chr8.4 | exon | 48675000 | 48675135 | 48675000 | ID=MS.gene38994.t1.exon5;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48675000 | 48675135 | 48675000 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| chr8.4 | exon | 48674316 | 48674555 | 48674316 | ID=MS.gene38994.t1.exon6;Parent=MS.gene38994.t1 |
| chr8.4 | CDS | 48674316 | 48674555 | 48674316 | ID=cds.MS.gene38994.t1;Parent=MS.gene38994.t1 |
| Gene Sequence |
| Protein sequence |
