Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008143.t1 | AES71012.1 | 97 | 361 | 11 | 0 | 1 | 361 | 1 | 361 | 7.30E-191 | 676.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008143.t1 | O22287 | 90.6 | 361 | 34 | 0 | 1 | 361 | 1 | 361 | 1.6e-178 | 626.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008143.t1 | G7J9Y8 | 97.0 | 361 | 11 | 0 | 1 | 361 | 1 | 361 | 5.3e-191 | 676.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008143 | MS.gene20834 | PPI |
| MS.gene008143 | MS.gene022258 | PPI |
| MS.gene20783 | MS.gene008143 | PPI |
| MS.gene70588 | MS.gene008143 | PPI |
| MS.gene008143 | MS.gene25915 | PPI |
| MS.gene008143 | MS.gene074391 | PPI |
| MS.gene008143 | MS.gene07262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008143.t1 | MTR_3g069070 | 99.446 | 361 | 2 | 0 | 1 | 361 | 1 | 361 | 0.0 | 731 |
| MS.gene008143.t1 | MTR_5g080770 | 93.352 | 361 | 24 | 0 | 1 | 361 | 1 | 361 | 0.0 | 687 |
| MS.gene008143.t1 | MTR_3g069070 | 99.338 | 302 | 2 | 0 | 60 | 361 | 1 | 302 | 0.0 | 613 |
| MS.gene008143.t1 | MTR_4g133690 | 73.130 | 361 | 40 | 3 | 1 | 361 | 1 | 304 | 0.0 | 506 |
| MS.gene008143.t1 | MTR_3g078570 | 32.250 | 400 | 223 | 7 | 3 | 354 | 10 | 409 | 1.15e-63 | 208 |
| MS.gene008143.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 1.15e-62 | 206 |
| MS.gene008143.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 7.17e-57 | 190 |
| MS.gene008143.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.97e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008143.t1 | AT2G39770 | 91.136 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 0.0 | 681 |
| MS.gene008143.t1 | AT2G39770 | 91.136 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 0.0 | 681 |
| MS.gene008143.t1 | AT2G39770 | 91.136 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 0.0 | 681 |
| MS.gene008143.t1 | AT3G55590 | 83.791 | 364 | 56 | 1 | 1 | 361 | 1 | 364 | 0.0 | 629 |
| MS.gene008143.t1 | AT4G30570 | 76.900 | 329 | 75 | 1 | 21 | 348 | 1 | 329 | 0.0 | 519 |
| MS.gene008143.t1 | AT2G04650 | 32.570 | 393 | 224 | 7 | 3 | 354 | 8 | 400 | 1.85e-65 | 213 |
| MS.gene008143.t1 | AT2G04650 | 32.208 | 385 | 222 | 6 | 9 | 354 | 4 | 388 | 4.92e-65 | 211 |
| MS.gene008143.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 7.07e-65 | 212 |
| MS.gene008143.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 7.07e-65 | 212 |
| MS.gene008143.t1 | AT1G74910 | 30.411 | 365 | 216 | 6 | 3 | 329 | 11 | 375 | 5.41e-58 | 193 |
Find 108 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAGTGGCCCTCACATTT+TGG | 0.174139 | 3.4:+69368825 | MS.gene008143:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 3.4:-69368872 | None:intergenic |
| CAATGGTTCTGCCTGGATTC+TGG | 0.230745 | 3.4:+69368719 | MS.gene008143:CDS |
| TTGATTCTGGTTGGAGGGTT+TGG | 0.231295 | 3.4:+69367000 | MS.gene008143:CDS |
| CACAATGAAGGCATTGATTC+TGG | 0.244864 | 3.4:+69366987 | None:intergenic |
| CCTATTGAACCCCTCAGTTT+TGG | 0.269147 | 3.4:+69368621 | MS.gene008143:CDS |
| AATTACCTTTGTCACCATTA+TGG | 0.298623 | 3.4:-69368407 | None:intergenic |
| GTGCATGAGACAGCCAAAAT+TGG | 0.360392 | 3.4:+69368859 | MS.gene008143:CDS |
| GTTGACGAGCCATCGAAATA+TGG | 0.375253 | 3.4:+69368505 | MS.gene008143:CDS |
| TTTGCAGATAGAGGCTCTTA+AGG | 0.376635 | 3.4:+69368010 | MS.gene008143:intron |
| GGCATTCAACTGTTGGTCAA+TGG | 0.378871 | 3.4:+69369022 | MS.gene008143:CDS |
| GCATTCAACTGTTGGTCAAT+GGG | 0.390410 | 3.4:+69369023 | MS.gene008143:CDS |
| CTTCTCCTCCATGAGATTTG+TGG | 0.394590 | 3.4:-69368381 | None:intergenic |
| GAAATATGGTGTAGTTGTTA+TGG | 0.396468 | 3.4:+69368519 | MS.gene008143:CDS |
| CCAAAACTGAGGGGTTCAAT+AGG | 0.416025 | 3.4:-69368621 | None:intergenic |
| CTCTCAAGAAACTGAACCAT+TGG | 0.424571 | 3.4:+69368240 | MS.gene008143:CDS |
| AGCAAAATCAACAAGAGGCT+TGG | 0.428162 | 3.4:-69367055 | None:intergenic |
| ATTGGACCTGATGTTGCAAT+TGG | 0.435688 | 3.4:+69368895 | MS.gene008143:CDS |
| CAAGCCCATGATTCTGCATC+AGG | 0.436008 | 3.4:+69367080 | MS.gene008143:CDS |
| ATTGGGGACTGCAGGTCCCT+TGG | 0.442280 | 3.4:+69368258 | MS.gene008143:CDS |
| CCCCAAAATGTGAGGGCCAC+TGG | 0.444498 | 3.4:-69368827 | None:intergenic |
| GAATTTCTTGAAGGACTTTG+AGG | 0.444711 | 3.4:+69368192 | MS.gene008143:CDS |
| CCTGATGTTGCAATTGGTCC+TGG | 0.445714 | 3.4:+69368901 | MS.gene008143:CDS |
| CAGCCAAGGGACTATATAAC+AGG | 0.445775 | 3.4:+69368754 | MS.gene008143:CDS |
| GCCAGAGATAAGCTGATTGA+TGG | 0.448757 | 3.4:+69368286 | MS.gene008143:CDS |
| GTGAGGGCCACTGGCCAACT+TGG | 0.453022 | 3.4:-69368818 | None:intergenic |
| TAGCCTCACATGACTATCTC+TGG | 0.457298 | 3.4:-69369159 | None:intergenic |
| GTTGGCAACAAAATCAATGC+TGG | 0.457593 | 3.4:+69368592 | MS.gene008143:CDS |
| GCAAAATCAACAAGAGGCTT+GGG | 0.462216 | 3.4:-69367054 | None:intergenic |
| GTACTATTGAGTCAGGTGTC+AGG | 0.462789 | 3.4:+69368926 | MS.gene008143:CDS |
| CCTTACCTGATGCAGAATCA+TGG | 0.467053 | 3.4:-69367085 | None:intergenic |
| TCTCAAGAAACTGAACCATT+GGG | 0.467960 | 3.4:+69368241 | MS.gene008143:CDS |
| TTTGTTGCCAACAAACAACT+TGG | 0.477074 | 3.4:-69368581 | None:intergenic |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 3.4:+69368877 | MS.gene008143:CDS |
| AATTCTATCATTTCTTTGAG+TGG | 0.484489 | 3.4:-69368358 | None:intergenic |
| GGTGATGTTGAATTTCTTGA+AGG | 0.486495 | 3.4:+69368183 | MS.gene008143:intron |
| GCCATCAATCAGCTTATCTC+TGG | 0.487352 | 3.4:-69368287 | None:intergenic |
| GAGAAACCCAAGTTGTTTGT+TGG | 0.488405 | 3.4:+69368574 | MS.gene008143:CDS |
| TGCATATCCAGCAGCATCAT+CGG | 0.488487 | 3.4:+69368997 | MS.gene008143:CDS |
| CCTGGCTGTACTATTGAGTC+AGG | 0.491456 | 3.4:+69368919 | MS.gene008143:CDS |
| TTGGGAACGCTGAGTGTCAA+TGG | 0.493354 | 3.4:-69367036 | None:intergenic |
| GTGGAGAATATGACTATCCT+TGG | 0.505671 | 3.4:+69369051 | MS.gene008143:CDS |
| ACCCACTTCTATTGAGAAAG+AGG | 0.506248 | 3.4:+69368660 | MS.gene008143:CDS |
| TGGAGGAGAAGCTTCCATAA+TGG | 0.508219 | 3.4:+69368393 | MS.gene008143:CDS |
| GCATATCCAGCAGCATCATC+GGG | 0.514239 | 3.4:+69368998 | MS.gene008143:CDS |
| TGGTTGGAGGGTTTGGAACA+AGG | 0.517924 | 3.4:+69367007 | MS.gene008143:CDS |
| GAGGGTTTGGAACAAGGTTG+AGG | 0.519056 | 3.4:+69367013 | MS.gene008143:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.520723 | 3.4:+69366991 | MS.gene008143:CDS |
| GAAGAAGACTTCTTCCAAGT+TGG | 0.520882 | 3.4:+69368804 | MS.gene008143:CDS |
| ATCGGGTGGCATTCAACTGT+TGG | 0.522221 | 3.4:+69369015 | MS.gene008143:CDS |
| CCTGGATTCTGGATGGACAT+TGG | 0.522294 | 3.4:+69368730 | MS.gene008143:CDS |
| ATAGAATTCCACAAATCTCA+TGG | 0.522477 | 3.4:+69368373 | MS.gene008143:CDS |
| CTATATGCAATGGTTCTGCC+TGG | 0.525369 | 3.4:+69368712 | MS.gene008143:CDS |
| AACAGGTCTGAGACTCTACC+TGG | 0.527965 | 3.4:+69368771 | MS.gene008143:CDS |
| CCAATGTCCATCCAGAATCC+AGG | 0.528298 | 3.4:-69368730 | None:intergenic |
| CCAGGACCAATTGCAACATC+AGG | 0.528530 | 3.4:-69368901 | None:intergenic |
| AACAAATTTCTCAACCTGCC+CGG | 0.528886 | 3.4:-69368551 | None:intergenic |
| ACTGAACCATTGGGGACTGC+AGG | 0.534135 | 3.4:+69368250 | MS.gene008143:CDS |
| AGACCTGTTATATAGTCCCT+TGG | 0.537146 | 3.4:-69368757 | None:intergenic |
| CTTATCTCTGGCAAGAGCCA+AGG | 0.538273 | 3.4:-69368275 | None:intergenic |
| ATGCCACCCGATGATGCTGC+TGG | 0.538528 | 3.4:-69369004 | None:intergenic |
| GATAAGCTGATTGATGGCTC+TGG | 0.538569 | 3.4:+69368292 | MS.gene008143:CDS |
| TGGAGTTACTGAAGTGGTGC+TGG | 0.539605 | 3.4:+69368037 | MS.gene008143:CDS |
| GCACTGTAATGAGAGGAGTT+CGG | 0.540270 | 3.4:+69368959 | MS.gene008143:CDS |
| CACCTCTTTCTCAATAGAAG+TGG | 0.543517 | 3.4:-69368662 | None:intergenic |
| AGGCATTGATTCTGGTTGGA+GGG | 0.546975 | 3.4:+69366995 | MS.gene008143:CDS |
| AAGGCATTGATTCTGGTTGG+AGG | 0.548820 | 3.4:+69366994 | MS.gene008143:CDS |
| TTGGCAACAAAATCAATGCT+GGG | 0.556088 | 3.4:+69368593 | MS.gene008143:CDS |
| ATAGAGGCTCTTAAGGACAT+TGG | 0.566425 | 3.4:+69368017 | MS.gene008143:CDS |
| TCTTCTTCCTGAGTGAGTCC+AGG | 0.570610 | 3.4:-69368789 | None:intergenic |
| TTATCTCTGGCAAGAGCCAA+GGG | 0.571035 | 3.4:-69368274 | None:intergenic |
| TCAATATGATCCAAAACTGA+GGG | 0.571408 | 3.4:-69368631 | None:intergenic |
| GACTCTACCTGGACTCACTC+AGG | 0.571470 | 3.4:+69368782 | MS.gene008143:CDS |
| CTTACCTGATGCAGAATCAT+GGG | 0.572676 | 3.4:-69367084 | None:intergenic |
| ACCTCTTTCTCAATAGAAGT+GGG | 0.579545 | 3.4:-69368661 | None:intergenic |
| TATGGAAGAGACTACCGGGC+AGG | 0.580495 | 3.4:+69368537 | MS.gene008143:CDS |
| TTGTTGCCAACAAACAACTT+GGG | 0.582555 | 3.4:-69368580 | None:intergenic |
| GGTTCTGCCTGGATTCTGGA+TGG | 0.583086 | 3.4:+69368723 | MS.gene008143:CDS |
| ATCACATTCCCCAAAATGTG+AGG | 0.586656 | 3.4:-69368835 | None:intergenic |
| TGTTGGTCAATGGGCTCGTG+TGG | 0.587690 | 3.4:+69369032 | MS.gene008143:CDS |
| AGCTTCCATAATGGTGACAA+AGG | 0.594491 | 3.4:+69368402 | MS.gene008143:CDS |
| GGATGGACATTGGACAGCCA+AGG | 0.596026 | 3.4:+69368740 | MS.gene008143:CDS |
| TTCAATATGATCCAAAACTG+AGG | 0.607441 | 3.4:-69368632 | None:intergenic |
| GATGGACATTGGACAGCCAA+GGG | 0.607762 | 3.4:+69368741 | MS.gene008143:CDS |
| TCAAGTTGCACTGTAATGAG+AGG | 0.608923 | 3.4:+69368952 | MS.gene008143:CDS |
| AAGGGACCTGCAGTCCCCAA+TGG | 0.610136 | 3.4:-69368256 | None:intergenic |
| ACTTCTTCCAAGTTGGCCAG+TGG | 0.612092 | 3.4:+69368811 | MS.gene008143:CDS |
| GTTGTTATGGAAGAGACTAC+CGG | 0.612863 | 3.4:+69368532 | MS.gene008143:CDS |
| ACAACTACACCATATTTCGA+TGG | 0.616973 | 3.4:-69368514 | None:intergenic |
| TTGTTAGCAAAATCAACAAG+AGG | 0.621493 | 3.4:-69367060 | None:intergenic |
| TGAGACAGCCAAAATTGGCG+AGG | 0.624566 | 3.4:+69368864 | MS.gene008143:CDS |
| GCACAATCCATACCTCTGGT+TGG | 0.626350 | 3.4:-69368070 | None:intergenic |
| CCTGACTCAATAGTACAGCC+AGG | 0.628206 | 3.4:-69368919 | None:intergenic |
| ATACATGGACATCTTCTCCA+AGG | 0.629569 | 3.4:-69369068 | None:intergenic |
| CTCAAGAAACTGAACCATTG+GGG | 0.633701 | 3.4:+69368242 | MS.gene008143:CDS |
| TGTAAACTTCATCAGATACA+TGG | 0.633717 | 3.4:-69369083 | None:intergenic |
| TTGTTATGGAAGAGACTACC+GGG | 0.634181 | 3.4:+69368533 | MS.gene008143:CDS |
| TCTGATGAAGTTTACAGCAA+TGG | 0.634276 | 3.4:+69369090 | MS.gene008143:CDS |
| GAGACAGCCAAAATTGGCGA+GGG | 0.639601 | 3.4:+69368865 | MS.gene008143:CDS |
| GGACATTGGAGTTACTGAAG+TGG | 0.642199 | 3.4:+69368031 | MS.gene008143:CDS |
| TCACATTCCCCAAAATGTGA+GGG | 0.643108 | 3.4:-69368834 | None:intergenic |
| AGTTTACAGCAATGGTGGTG+TGG | 0.665559 | 3.4:+69369098 | MS.gene008143:CDS |
| GGCTATCAATTACCAACCAG+AGG | 0.681698 | 3.4:+69368058 | MS.gene008143:CDS |
| GATGAAGTTTACAGCAATGG+TGG | 0.691163 | 3.4:+69369093 | MS.gene008143:CDS |
| TATCCAGCAGCATCATCGGG+TGG | 0.692094 | 3.4:+69369001 | MS.gene008143:CDS |
| AATCCAGAGATAGTCATGTG+AGG | 0.703190 | 3.4:+69369156 | MS.gene008143:CDS |
| CAATATGATCCAAAACTGAG+GGG | 0.719526 | 3.4:-69368630 | None:intergenic |
| GAATTCCACAAATCTCATGG+AGG | 0.748000 | 3.4:+69368376 | MS.gene008143:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTTTGACATAATAAAA+TGG | - | chr3.4:69367414-69367433 | None:intergenic | 15.0% |
| !! | TATCTGCAAAACAAATTAAA+AGG | - | chr3.4:69368000-69368019 | None:intergenic | 20.0% |
| !!! | AAATCAACTTGTTGAAATTT+GGG | - | chr3.4:69367661-69367680 | None:intergenic | 20.0% |
| !!! | TAAATCAACTTGTTGAAATT+TGG | - | chr3.4:69367662-69367681 | None:intergenic | 20.0% |
| ! | AAACAAAAAGCTATATGCAA+TGG | + | chr3.4:69368702-69368721 | MS.gene008143:CDS | 25.0% |
| ! | AATTCAAGAAACTCAAGAAA+CGG | - | chr3.4:69367122-69367141 | None:intergenic | 25.0% |
| ! | AATTCTATCATTTCTTTGAG+TGG | - | chr3.4:69368361-69368380 | None:intergenic | 25.0% |
| ! | AGGGAGAAAATATAACATAT+AGG | - | chr3.4:69367199-69367218 | None:intergenic | 25.0% |
| ! | ATTAAAAGGAAAAACACATG+AGG | - | chr3.4:69367986-69368005 | None:intergenic | 25.0% |
| ! | GTTGTAGGTTAATATAGTAT+GGG | + | chr3.4:69367719-69367738 | MS.gene008143:intron | 25.0% |
| ! | TGTTGTAGGTTAATATAGTA+TGG | + | chr3.4:69367718-69367737 | MS.gene008143:intron | 25.0% |
| !!! | AATCAACTTGTTGAAATTTG+GGG | - | chr3.4:69367660-69367679 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCATATCCAACA+AGG | + | chr3.4:69367333-69367352 | MS.gene008143:intron | 25.0% |
| !!! | TTAATTTGTTTTGCAGATAG+AGG | + | chr3.4:69368001-69368020 | MS.gene008143:intron | 25.0% |
| AATTACCTTTGTCACCATTA+TGG | - | chr3.4:69368410-69368429 | None:intergenic | 30.0% | |
| ATAGAATTCCACAAATCTCA+TGG | + | chr3.4:69368373-69368392 | MS.gene008143:CDS | 30.0% | |
| ATAGATAGTACTCTTGAGAA+GGG | + | chr3.4:69367577-69367596 | MS.gene008143:intron | 30.0% | |
| ATGGTGACAAAGGTAATTAA+CGG | + | chr3.4:69368412-69368431 | MS.gene008143:intron | 30.0% | |
| ATTCAAGAAACTCAAGAAAC+GGG | - | chr3.4:69367121-69367140 | None:intergenic | 30.0% | |
| GAAATATGGTGTAGTTGTTA+TGG | + | chr3.4:69368519-69368538 | MS.gene008143:CDS | 30.0% | |
| TCAATATGATCCAAAACTGA+GGG | - | chr3.4:69368634-69368653 | None:intergenic | 30.0% | |
| TGGATATGAAAAAATGTTGC+AGG | - | chr3.4:69367330-69367349 | None:intergenic | 30.0% | |
| TGTAAACTTCATCAGATACA+TGG | - | chr3.4:69369086-69369105 | None:intergenic | 30.0% | |
| TTCAATATGATCCAAAACTG+AGG | - | chr3.4:69368635-69368654 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr3.4:69367063-69367082 | None:intergenic | 30.0% | |
| ! | ATTTTCTGAATGAGTTGTGT+TGG | + | chr3.4:69367435-69367454 | MS.gene008143:intron | 30.0% |
| !! | ACAATTTTTCGCACTTTTTG+AGG | - | chr3.4:69367782-69367801 | None:intergenic | 30.0% |
| !! | TTTGCATGTTTATTGACTCT+TGG | + | chr3.4:69367296-69367315 | MS.gene008143:intron | 30.0% |
| !! | TTTTTGTTTGCTGCAATCTT+TGG | - | chr3.4:69368691-69368710 | None:intergenic | 30.0% |
| AACACCTTCATTGTGTTTGA+GGG | + | chr3.4:69367532-69367551 | MS.gene008143:intron | 35.0% | |
| AATCCAGCAAGATTCAATGT+TGG | - | chr3.4:69367365-69367384 | None:intergenic | 35.0% | |
| AATTCAACATCACCTACAAG+AGG | - | chr3.4:69368177-69368196 | None:intergenic | 35.0% | |
| ACAACTACACCATATTTCGA+TGG | - | chr3.4:69368517-69368536 | None:intergenic | 35.0% | |
| ACCTCTTTCTCAATAGAAGT+GGG | - | chr3.4:69368664-69368683 | None:intergenic | 35.0% | |
| CAATATGATCCAAAACTGAG+GGG | - | chr3.4:69368633-69368652 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3.4:69367636-69367655 | None:intergenic | 35.0% | |
| CTTGAGAAGGGTTTATAAAG+AGG | + | chr3.4:69367589-69367608 | MS.gene008143:intron | 35.0% | |
| GAATTTCTTGAAGGACTTTG+AGG | + | chr3.4:69368192-69368211 | MS.gene008143:CDS | 35.0% | |
| GATAGATAGTACTCTTGAGA+AGG | + | chr3.4:69367576-69367595 | MS.gene008143:intron | 35.0% | |
| GCAAGATATTTCAGCAGAAT+GGG | + | chr3.4:69367273-69367292 | MS.gene008143:intron | 35.0% | |
| GGTGATGTTGAATTTCTTGA+AGG | + | chr3.4:69368183-69368202 | MS.gene008143:intron | 35.0% | |
| TCGCTGTTGAGAACAAAAAA+TGG | - | chr3.4:69368322-69368341 | None:intergenic | 35.0% | |
| TCTCAAGAAACTGAACCATT+GGG | + | chr3.4:69368241-69368260 | MS.gene008143:CDS | 35.0% | |
| TCTGATGAAGTTTACAGCAA+TGG | + | chr3.4:69369090-69369109 | MS.gene008143:CDS | 35.0% | |
| TGCAAGATATTTCAGCAGAA+TGG | + | chr3.4:69367272-69367291 | MS.gene008143:intron | 35.0% | |
| TGGAAATTCCACCTTAATTG+CGG | + | chr3.4:69367455-69367474 | MS.gene008143:intron | 35.0% | |
| TTCAAGAAACTCAAGAAACG+GGG | - | chr3.4:69367120-69367139 | None:intergenic | 35.0% | |
| TTCATTGAGAATGACTGACA+CGG | - | chr3.4:69368110-69368129 | None:intergenic | 35.0% | |
| TTGGCAACAAAATCAATGCT+GGG | + | chr3.4:69368593-69368612 | MS.gene008143:CDS | 35.0% | |
| TTGTTGCCAACAAACAACTT+GGG | - | chr3.4:69368583-69368602 | None:intergenic | 35.0% | |
| TTTGTTGCCAACAAACAACT+TGG | - | chr3.4:69368584-69368603 | None:intergenic | 35.0% | |
| ! | TTACGATTGCTATGCTACTT+GGG | + | chr3.4:69367143-69367162 | MS.gene008143:intron | 35.0% |
| !! | TTTCGCACTTTTTGAGGAAA+GGG | - | chr3.4:69367776-69367795 | None:intergenic | 35.0% |
| !! | TTTTCGCACTTTTTGAGGAA+AGG | - | chr3.4:69367777-69367796 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGATTTCCTTGTG+GGG | - | chr3.4:69369129-69369148 | None:intergenic | 35.0% |
| !!! | GCTTGTTTTGATTTCCTTGT+GGG | - | chr3.4:69369130-69369149 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTGATTTCCTTG+TGG | - | chr3.4:69369131-69369150 | None:intergenic | 35.0% |
| AACAAATTTCTCAACCTGCC+CGG | - | chr3.4:69368554-69368573 | None:intergenic | 40.0% | |
| ACACCTTCATTGTGTTTGAG+GGG | + | chr3.4:69367533-69367552 | MS.gene008143:intron | 40.0% | |
| ACCCACTTCTATTGAGAAAG+AGG | + | chr3.4:69368660-69368679 | MS.gene008143:CDS | 40.0% | |
| AGACCTGTTATATAGTCCCT+TGG | - | chr3.4:69368760-69368779 | None:intergenic | 40.0% | |
| AGCAAAATCAACAAGAGGCT+TGG | - | chr3.4:69367058-69367077 | None:intergenic | 40.0% | |
| AGCTTCCATAATGGTGACAA+AGG | + | chr3.4:69368402-69368421 | MS.gene008143:CDS | 40.0% | |
| AGGAAAAACACATGAGGTGA+TGG | - | chr3.4:69367980-69367999 | None:intergenic | 40.0% | |
| ATACATGGACATCTTCTCCA+AGG | - | chr3.4:69369071-69369090 | None:intergenic | 40.0% | |
| ATAGAGGCTCTTAAGGACAT+TGG | + | chr3.4:69368017-69368036 | MS.gene008143:CDS | 40.0% | |
| ATCACATTCCCCAAAATGTG+AGG | - | chr3.4:69368838-69368857 | None:intergenic | 40.0% | |
| ATCTACTCACAGACAGCAAA+GGG | - | chr3.4:69367890-69367909 | None:intergenic | 40.0% | |
| ATTGGACCTGATGTTGCAAT+TGG | + | chr3.4:69368895-69368914 | MS.gene008143:CDS | 40.0% | |
| CAACACCTTCATTGTGTTTG+AGG | + | chr3.4:69367531-69367550 | MS.gene008143:intron | 40.0% | |
| CAACCAACATTGAATCTTGC+TGG | + | chr3.4:69367359-69367378 | MS.gene008143:intron | 40.0% | |
| CACCTCTTTCTCAATAGAAG+TGG | - | chr3.4:69368665-69368684 | None:intergenic | 40.0% | |
| CTAACCAAAGGTCGCAATTT+AGG | - | chr3.4:69367495-69367514 | None:intergenic | 40.0% | |
| CTCAAGAAACTGAACCATTG+GGG | + | chr3.4:69368242-69368261 | MS.gene008143:CDS | 40.0% | |
| CTCTCAAGAAACTGAACCAT+TGG | + | chr3.4:69368240-69368259 | MS.gene008143:CDS | 40.0% | |
| CTTACCTGATGCAGAATCAT+GGG | - | chr3.4:69367087-69367106 | None:intergenic | 40.0% | |
| CTTACGATTGCTATGCTACT+TGG | + | chr3.4:69367142-69367161 | MS.gene008143:intron | 40.0% | |
| GAAGAAGACTTCTTCCAAGT+TGG | + | chr3.4:69368804-69368823 | MS.gene008143:CDS | 40.0% | |
| GAATTCCACAAATCTCATGG+AGG | + | chr3.4:69368376-69368395 | MS.gene008143:CDS | 40.0% | |
| GAGAAACCCAAGTTGTTTGT+TGG | + | chr3.4:69368574-69368593 | MS.gene008143:CDS | 40.0% | |
| GAGAAGGGTTTATAAAGAGG+AGG | + | chr3.4:69367592-69367611 | MS.gene008143:intron | 40.0% | |
| GAGTACTATCTATCCGATGT+GGG | - | chr3.4:69367570-69367589 | None:intergenic | 40.0% | |
| GATGAAGTTTACAGCAATGG+TGG | + | chr3.4:69369093-69369112 | MS.gene008143:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+GGG | - | chr3.4:69367057-69367076 | None:intergenic | 40.0% | |
| GCATTCAACTGTTGGTCAAT+GGG | + | chr3.4:69369023-69369042 | MS.gene008143:CDS | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr3.4:69369051-69369070 | MS.gene008143:CDS | 40.0% | |
| GTTGGCAACAAAATCAATGC+TGG | + | chr3.4:69368592-69368611 | MS.gene008143:CDS | 40.0% | |
| GTTGTTATGGAAGAGACTAC+CGG | + | chr3.4:69368532-69368551 | MS.gene008143:CDS | 40.0% | |
| TCAATTACCAACCAGAGGTA+TGG | + | chr3.4:69368063-69368082 | MS.gene008143:intron | 40.0% | |
| TCACATTCCCCAAAATGTGA+GGG | - | chr3.4:69368837-69368856 | None:intergenic | 40.0% | |
| TTGTGAACACTTCCTCTTGT+AGG | + | chr3.4:69368162-69368181 | MS.gene008143:intron | 40.0% | |
| TTGTTATGGAAGAGACTACC+GGG | + | chr3.4:69368533-69368552 | MS.gene008143:CDS | 40.0% | |
| TTTGCAGATAGAGGCTCTTA+AGG | + | chr3.4:69368010-69368029 | MS.gene008143:intron | 40.0% | |
| ! | AACCTACAACACGTTGATGA+TGG | - | chr3.4:69367709-69367728 | None:intergenic | 40.0% |
| ! | AATGTTGGTTGTTGCCTTGT+TGG | - | chr3.4:69367350-69367369 | None:intergenic | 40.0% |
| ! | AGAGTACTATCTATCCGATG+TGG | - | chr3.4:69367571-69367590 | None:intergenic | 40.0% |
| ! | CTCAAACACAATGAAGGTGT+TGG | - | chr3.4:69367533-69367552 | None:intergenic | 40.0% |
| ! | CTGACTGACTCATGATATCA+GGG | - | chr3.4:69367218-69367237 | None:intergenic | 40.0% |
| ! | TCAAGTTGCACTGTAATGAG+AGG | + | chr3.4:69368952-69368971 | MS.gene008143:CDS | 40.0% |
| ! | TCTGACTGACTCATGATATC+AGG | - | chr3.4:69367219-69367238 | None:intergenic | 40.0% |
| ! | TGTTTTACATCTGCTTGTGC+AGG | + | chr3.4:69368483-69368502 | MS.gene008143:intron | 40.0% |
| !! | AAACACAATGAAGGTGTTGG+AGG | - | chr3.4:69367530-69367549 | None:intergenic | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr3.4:69366991-69367010 | MS.gene008143:CDS | 40.0% |
| !! | TTCGCACTTTTTGAGGAAAG+GGG | - | chr3.4:69367775-69367794 | None:intergenic | 40.0% |
| CACCTTCATTGTGTTTGAGG+GGG | + | chr3.4:69367534-69367553 | MS.gene008143:intron | 45.0% | |
| CAGCCAAGGGACTATATAAC+AGG | + | chr3.4:69368754-69368773 | MS.gene008143:CDS | 45.0% | |
| CATCTACTCACAGACAGCAA+AGG | - | chr3.4:69367891-69367910 | None:intergenic | 45.0% | |
| CCAAAACTGAGGGGTTCAAT+AGG | - | chr3.4:69368624-69368643 | None:intergenic | 45.0% | |
| CCATGATTCTGCATCAGGTA+AGG | + | chr3.4:69367085-69367104 | MS.gene008143:intron | 45.0% | |
| CCTTACCTGATGCAGAATCA+TGG | - | chr3.4:69367088-69367107 | None:intergenic | 45.0% | |
| CTCCATCATCAACGTGTTGT+AGG | + | chr3.4:69367704-69367723 | MS.gene008143:intron | 45.0% | |
| CTGCAATGAAGGCTAACCAA+AGG | - | chr3.4:69367507-69367526 | None:intergenic | 45.0% | |
| CTTCTCCTCCATGAGATTTG+TGG | - | chr3.4:69368384-69368403 | None:intergenic | 45.0% | |
| GCACTGTAATGAGAGGAGTT+CGG | + | chr3.4:69368959-69368978 | MS.gene008143:CDS | 45.0% | |
| GCCAGAGATAAGCTGATTGA+TGG | + | chr3.4:69368286-69368305 | MS.gene008143:CDS | 45.0% | |
| GCCATCAATCAGCTTATCTC+TGG | - | chr3.4:69368290-69368309 | None:intergenic | 45.0% | |
| GCTGGATTCTGTCAAAACTC+TGG | + | chr3.4:69367377-69367396 | MS.gene008143:intron | 45.0% | |
| GGACATTGGAGTTACTGAAG+TGG | + | chr3.4:69368031-69368050 | MS.gene008143:CDS | 45.0% | |
| GGCATTCAACTGTTGGTCAA+TGG | + | chr3.4:69369022-69369041 | MS.gene008143:CDS | 45.0% | |
| GGCTATCAATTACCAACCAG+AGG | + | chr3.4:69368058-69368077 | MS.gene008143:CDS | 45.0% | |
| GTACTATTGAGTCAGGTGTC+AGG | + | chr3.4:69368926-69368945 | MS.gene008143:CDS | 45.0% | |
| GTGCATGAGACAGCCAAAAT+TGG | + | chr3.4:69368859-69368878 | MS.gene008143:CDS | 45.0% | |
| GTTGACGAGCCATCGAAATA+TGG | + | chr3.4:69368505-69368524 | MS.gene008143:CDS | 45.0% | |
| TGACACGGTTAGGAAAAGAG+AGG | - | chr3.4:69368095-69368114 | None:intergenic | 45.0% | |
| TGAGAATGACTGACACGGTT+AGG | - | chr3.4:69368105-69368124 | None:intergenic | 45.0% | |
| TGCATATCCAGCAGCATCAT+CGG | + | chr3.4:69368997-69369016 | MS.gene008143:CDS | 45.0% | |
| TGGAGGAGAAGCTTCCATAA+TGG | + | chr3.4:69368393-69368412 | MS.gene008143:CDS | 45.0% | |
| TTATCTCTGGCAAGAGCCAA+GGG | - | chr3.4:69368277-69368296 | None:intergenic | 45.0% | |
| TTGCTGTCTGTGAGTAGATG+CGG | + | chr3.4:69367891-69367910 | MS.gene008143:intron | 45.0% | |
| TTGTTCTTGCTTGCGTGAGA+AGG | + | chr3.4:69367798-69367817 | MS.gene008143:intron | 45.0% | |
| ! | AGTTTACAGCAATGGTGGTG+TGG | + | chr3.4:69369098-69369117 | MS.gene008143:CDS | 45.0% |
| ! | CCTATTGAACCCCTCAGTTT+TGG | + | chr3.4:69368621-69368640 | MS.gene008143:CDS | 45.0% |
| ! | CTATATGCAATGGTTCTGCC+TGG | + | chr3.4:69368712-69368731 | MS.gene008143:CDS | 45.0% |
| ! | GATAAGCTGATTGATGGCTC+TGG | + | chr3.4:69368292-69368311 | MS.gene008143:CDS | 45.0% |
| ! | TTGATTCTGGTTGGAGGGTT+TGG | + | chr3.4:69367000-69367019 | MS.gene008143:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+AGG | + | chr3.4:69366994-69367013 | MS.gene008143:CDS | 45.0% |
| !! | AGGCATTGATTCTGGTTGGA+GGG | + | chr3.4:69366995-69367014 | MS.gene008143:CDS | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3.4:69367627-69367646 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3.4:69367624-69367643 | MS.gene008143:intron | 45.0% |
| !! | CTACAACACGTTGATGATGG+AGG | - | chr3.4:69367706-69367725 | None:intergenic | 45.0% |
| !! | TCGCACTTTTTGAGGAAAGG+GGG | - | chr3.4:69367774-69367793 | None:intergenic | 45.0% |
| AGGTCGCAATTTAGGCGACT+AGG | - | chr3.4:69367487-69367506 | None:intergenic | 50.0% | |
| ATCGGGTGGCATTCAACTGT+TGG | + | chr3.4:69369015-69369034 | MS.gene008143:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr3.4:69368877-69368896 | MS.gene008143:CDS | 50.0% | |
| CAAGCCCATGATTCTGCATC+AGG | + | chr3.4:69367080-69367099 | MS.gene008143:CDS | 50.0% | |
| CACAGACAGCAAAGGGATGA+TGG | - | chr3.4:69367883-69367902 | None:intergenic | 50.0% | |
| CACCCCCTCAAACACAATGA+AGG | - | chr3.4:69367539-69367558 | None:intergenic | 50.0% | |
| CCAATGTCCATCCAGAATCC+AGG | - | chr3.4:69368733-69368752 | None:intergenic | 50.0% | |
| CCAGGACCAATTGCAACATC+AGG | - | chr3.4:69368904-69368923 | None:intergenic | 50.0% | |
| CCTGACTCAATAGTACAGCC+AGG | - | chr3.4:69368922-69368941 | None:intergenic | 50.0% | |
| CCTGATGTTGCAATTGGTCC+TGG | + | chr3.4:69368901-69368920 | MS.gene008143:CDS | 50.0% | |
| CCTGGATTCTGGATGGACAT+TGG | + | chr3.4:69368730-69368749 | MS.gene008143:CDS | 50.0% | |
| CCTGGCTGTACTATTGAGTC+AGG | + | chr3.4:69368919-69368938 | MS.gene008143:CDS | 50.0% | |
| CTTATCTCTGGCAAGAGCCA+AGG | - | chr3.4:69368278-69368297 | None:intergenic | 50.0% | |
| CTTCATTGTGTTTGAGGGGG+TGG | + | chr3.4:69367537-69367556 | MS.gene008143:intron | 50.0% | |
| GAGACAGCCAAAATTGGCGA+GGG | + | chr3.4:69368865-69368884 | MS.gene008143:CDS | 50.0% | |
| GATGGACATTGGACAGCCAA+GGG | + | chr3.4:69368741-69368760 | MS.gene008143:CDS | 50.0% | |
| GCACAATCCATACCTCTGGT+TGG | - | chr3.4:69368073-69368092 | None:intergenic | 50.0% | |
| GCATATCCAGCAGCATCATC+GGG | + | chr3.4:69368998-69369017 | MS.gene008143:CDS | 50.0% | |
| GGTCGCAATTTAGGCGACTA+GGG | - | chr3.4:69367486-69367505 | None:intergenic | 50.0% | |
| GTCGCAATTTAGGCGACTAG+GGG | - | chr3.4:69367485-69367504 | None:intergenic | 50.0% | |
| GTCGCCTAAATTGCGACCTT+TGG | + | chr3.4:69367488-69367507 | MS.gene008143:intron | 50.0% | |
| TCTTCTTCCTGAGTGAGTCC+AGG | - | chr3.4:69368792-69368811 | None:intergenic | 50.0% | |
| TGAGACAGCCAAAATTGGCG+AGG | + | chr3.4:69368864-69368883 | MS.gene008143:CDS | 50.0% | |
| TGCTGTCTGTGAGTAGATGC+GGG | + | chr3.4:69367892-69367911 | MS.gene008143:intron | 50.0% | |
| TGGAGTTACTGAAGTGGTGC+TGG | + | chr3.4:69368037-69368056 | MS.gene008143:CDS | 50.0% | |
| TTGGGAACGCTGAGTGTCAA+TGG | - | chr3.4:69367039-69367058 | None:intergenic | 50.0% | |
| ! | AACAGGTCTGAGACTCTACC+TGG | + | chr3.4:69368771-69368790 | MS.gene008143:CDS | 50.0% |
| ! | ACTTCTTCCAAGTTGGCCAG+TGG | + | chr3.4:69368811-69368830 | MS.gene008143:CDS | 50.0% |
| ! | AGAGGCACAATCCATACCTC+TGG | - | chr3.4:69368077-69368096 | None:intergenic | 50.0% |
| ! | CAATGGTTCTGCCTGGATTC+TGG | + | chr3.4:69368719-69368738 | MS.gene008143:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr3.4:69368875-69368894 | None:intergenic | 50.0% |
| ! | GAGGGTTTGGAACAAGGTTG+AGG | + | chr3.4:69367013-69367032 | MS.gene008143:CDS | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr3.4:69367554-69367573 | MS.gene008143:intron | 50.0% |
| ! | TGGTTGGAGGGTTTGGAACA+AGG | + | chr3.4:69367007-69367026 | MS.gene008143:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3.4:69367622-69367641 | None:intergenic | 50.0% |
| !! | GACAGCAAAGGGATGATGGA+AGG | - | chr3.4:69367879-69367898 | None:intergenic | 50.0% |
| ACTGAACCATTGGGGACTGC+AGG | + | chr3.4:69368250-69368269 | MS.gene008143:CDS | 55.0% | |
| GACTCTACCTGGACTCACTC+AGG | + | chr3.4:69368782-69368801 | MS.gene008143:CDS | 55.0% | |
| GCAATTTAGGCGACTAGGGG+CGG | - | chr3.4:69367482-69367501 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3.4:69367614-69367633 | MS.gene008143:intron | 55.0% | |
| GGATGGACATTGGACAGCCA+AGG | + | chr3.4:69368740-69368759 | MS.gene008143:CDS | 55.0% | |
| GGTTCTGCCTGGATTCTGGA+TGG | + | chr3.4:69368723-69368742 | MS.gene008143:CDS | 55.0% | |
| TATCCAGCAGCATCATCGGG+TGG | + | chr3.4:69369001-69369020 | MS.gene008143:CDS | 55.0% | |
| TATGGAAGAGACTACCGGGC+AGG | + | chr3.4:69368537-69368556 | MS.gene008143:CDS | 55.0% | |
| ! | CCAGTGGCCCTCACATTTTG+GGG | + | chr3.4:69368827-69368846 | MS.gene008143:CDS | 55.0% |
| ! | GCCAGTGGCCCTCACATTTT+GGG | + | chr3.4:69368826-69368845 | MS.gene008143:CDS | 55.0% |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr3.4:69367518-69367537 | None:intergenic | 55.0% |
| ! | TGTTGGTCAATGGGCTCGTG+TGG | + | chr3.4:69369032-69369051 | MS.gene008143:CDS | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr3.4:69369113-69369132 | MS.gene008143:CDS | 55.0% |
| AAGGGACCTGCAGTCCCCAA+TGG | - | chr3.4:69368259-69368278 | None:intergenic | 60.0% | |
| ATGCCACCCGATGATGCTGC+TGG | - | chr3.4:69369007-69369026 | None:intergenic | 60.0% | |
| ATTGGGGACTGCAGGTCCCT+TGG | + | chr3.4:69368258-69368277 | MS.gene008143:CDS | 60.0% | |
| CCCCAAAATGTGAGGGCCAC+TGG | - | chr3.4:69368830-69368849 | None:intergenic | 60.0% | |
| CTAGGGGCGGACCGCAATTA+AGG | - | chr3.4:69367469-69367488 | None:intergenic | 60.0% | |
| ! | GGCCAGTGGCCCTCACATTT+TGG | + | chr3.4:69368825-69368844 | MS.gene008143:CDS | 60.0% |
| GGGGCGGACCGCAATTAAGG+TGG | - | chr3.4:69367466-69367485 | None:intergenic | 65.0% | |
| GTGAGGGCCACTGGCCAACT+TGG | - | chr3.4:69368821-69368840 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 69366991 | 69369176 | 69366991 | ID=MS.gene008143 |
| chr3.4 | mRNA | 69366991 | 69369176 | 69366991 | ID=MS.gene008143.t1;Parent=MS.gene008143 |
| chr3.4 | exon | 69366991 | 69367101 | 69366991 | ID=MS.gene008143.t1.exon1;Parent=MS.gene008143.t1 |
| chr3.4 | CDS | 69366991 | 69367101 | 69366991 | ID=cds.MS.gene008143.t1;Parent=MS.gene008143.t1 |
| chr3.4 | exon | 69368017 | 69368079 | 69368017 | ID=MS.gene008143.t1.exon2;Parent=MS.gene008143.t1 |
| chr3.4 | CDS | 69368017 | 69368079 | 69368017 | ID=cds.MS.gene008143.t1;Parent=MS.gene008143.t1 |
| chr3.4 | exon | 69368184 | 69368423 | 69368184 | ID=MS.gene008143.t1.exon3;Parent=MS.gene008143.t1 |
| chr3.4 | CDS | 69368184 | 69368423 | 69368184 | ID=cds.MS.gene008143.t1;Parent=MS.gene008143.t1 |
| chr3.4 | exon | 69368505 | 69369176 | 69368505 | ID=MS.gene008143.t1.exon4;Parent=MS.gene008143.t1 |
| chr3.4 | CDS | 69368505 | 69369176 | 69368505 | ID=cds.MS.gene008143.t1;Parent=MS.gene008143.t1 |
| Gene Sequence |
| Protein sequence |
