Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009073.t1 | XP_013446016.1 | 96.7 | 333 | 6 | 1 | 1 | 333 | 1 | 328 | 1.50E-182 | 648.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009073.t1 | Q8GYN9 | 76.4 | 339 | 72 | 4 | 1 | 333 | 1 | 337 | 9.7e-146 | 517.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009073.t1 | A0A072TT65 | 96.7 | 333 | 6 | 1 | 1 | 333 | 1 | 328 | 1.1e-182 | 648.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66767 | MS.gene009073 | PPI |
| MS.gene009073 | MS.gene034468 | PPI |
| MS.gene009073 | MS.gene43051 | PPI |
| MS.gene009073 | MS.gene050322 | PPI |
| MS.gene009073 | MS.gene007227 | PPI |
| MS.gene009073 | MS.gene84339 | PPI |
| MS.gene009073 | MS.gene35396 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009073.t1 | MTR_8g064990 | 96.697 | 333 | 6 | 1 | 1 | 333 | 1 | 328 | 0.0 | 667 |
| MS.gene009073.t1 | MTR_8g064990 | 98.810 | 252 | 3 | 0 | 82 | 333 | 3 | 254 | 0.0 | 520 |
| MS.gene009073.t1 | MTR_4g122220 | 34.928 | 209 | 123 | 3 | 81 | 285 | 14 | 213 | 1.83e-26 | 105 |
| MS.gene009073.t1 | MTR_8g062585 | 85.417 | 48 | 7 | 0 | 160 | 207 | 30 | 77 | 5.75e-24 | 94.0 |
| MS.gene009073.t1 | MTR_4g100350 | 25.424 | 295 | 210 | 4 | 37 | 327 | 10 | 298 | 3.75e-21 | 92.0 |
| MS.gene009073.t1 | MTR_8g062580 | 91.304 | 46 | 4 | 0 | 250 | 295 | 8 | 53 | 4.95e-21 | 90.9 |
| MS.gene009073.t1 | MTR_3g085700 | 28.826 | 281 | 173 | 10 | 66 | 329 | 2 | 272 | 5.71e-20 | 88.6 |
| MS.gene009073.t1 | MTR_2027s0010 | 29.944 | 177 | 111 | 5 | 81 | 252 | 8 | 176 | 1.71e-12 | 66.6 |
| MS.gene009073.t1 | MTR_8g010580 | 27.972 | 143 | 97 | 3 | 86 | 224 | 23 | 163 | 6.65e-11 | 63.2 |
| MS.gene009073.t1 | MTR_8g010580 | 27.972 | 143 | 97 | 3 | 86 | 224 | 23 | 163 | 9.56e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009073.t1 | AT1G60550 | 76.401 | 339 | 72 | 4 | 1 | 333 | 1 | 337 | 0.0 | 533 |
| MS.gene009073.t1 | AT4G16210 | 34.043 | 235 | 131 | 6 | 69 | 292 | 5 | 226 | 3.65e-28 | 110 |
| MS.gene009073.t1 | AT4G16800 | 29.435 | 248 | 171 | 3 | 82 | 327 | 54 | 299 | 2.66e-26 | 106 |
| MS.gene009073.t1 | AT5G43280 | 26.277 | 274 | 178 | 10 | 74 | 329 | 11 | 278 | 5.73e-13 | 68.6 |
| MS.gene009073.t1 | AT5G65940 | 29.439 | 214 | 126 | 7 | 73 | 275 | 12 | 211 | 3.54e-11 | 63.9 |
| MS.gene009073.t1 | AT5G65940 | 29.439 | 214 | 126 | 7 | 73 | 275 | 12 | 211 | 4.36e-11 | 63.9 |
| MS.gene009073.t1 | AT5G65940 | 29.439 | 214 | 126 | 7 | 73 | 275 | 12 | 211 | 4.36e-11 | 63.9 |
| MS.gene009073.t1 | AT5G65940 | 29.439 | 214 | 126 | 7 | 73 | 275 | 12 | 211 | 4.79e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGCAATTACTGGTTT+TGG | 0.240337 | 8.1:-38543792 | None:intergenic |
| GGCTGTTGAAGCAGAGAAAA+TGG | 0.259099 | 8.1:+38544311 | MS.gene009073:CDS |
| CCTTAATGTGTTAGACTTGC+AGG | 0.280510 | 8.1:+38543228 | MS.gene009073:CDS |
| GATAGTACCATTGCAATTAC+TGG | 0.296354 | 8.1:-38543798 | None:intergenic |
| GCAGCAGATAATGCTATCTT+TGG | 0.320415 | 8.1:+38543957 | MS.gene009073:CDS |
| TTCCTTCTCATGATGTTGTT+TGG | 0.337790 | 8.1:+38542116 | MS.gene009073:CDS |
| TCAAGTTACCAACGTGTTCA+TGG | 0.366573 | 8.1:+38542088 | MS.gene009073:CDS |
| TGACGGGCACGCTGGACTTC+AGG | 0.368255 | 8.1:+38544788 | MS.gene009073:CDS |
| AATGCTATCTTTGGCCAAAC+TGG | 0.368332 | 8.1:+38543966 | MS.gene009073:CDS |
| CCTGCAAGTCTAACACATTA+AGG | 0.368951 | 8.1:-38543228 | None:intergenic |
| GCAGGGTATGCTGTTGGAGG+AGG | 0.377182 | 8.1:+38543900 | MS.gene009073:CDS |
| AAATAGCCCAACCGCAATTC+GGG | 0.383989 | 8.1:+38544737 | MS.gene009073:CDS |
| GGGAGCTTTGATGCTGGTTA+TGG | 0.384393 | 8.1:+38544125 | MS.gene009073:CDS |
| TTATGTCAATTATAGGAAAT+GGG | 0.391046 | 8.1:+38544935 | MS.gene009073:intron |
| GTTTCTCACAAGGTTCTATA+CGG | 0.403885 | 8.1:+38544290 | MS.gene009073:CDS |
| CTAACATTAACACAGGTTGC+AGG | 0.410643 | 8.1:+38543882 | MS.gene009073:intron |
| TATTCTGATCATGAAAATAT+CGG | 0.418618 | 8.1:+38543202 | MS.gene009073:CDS |
| GAAATAGCCCAACCGCAATT+CGG | 0.424489 | 8.1:+38544736 | MS.gene009073:CDS |
| GAAGCACCTTAGGACCAGTT+TGG | 0.426368 | 8.1:-38543980 | None:intergenic |
| AGGAGGGCATATATTGCATA+TGG | 0.429416 | 8.1:+38543917 | MS.gene009073:CDS |
| TTCTCATGATGTTGTTTGGA+AGG | 0.432166 | 8.1:+38542120 | MS.gene009073:CDS |
| ATGTCTTTGTTGTTTGCCAT+TGG | 0.466222 | 8.1:-38541965 | None:intergenic |
| TTGAGAACCCGAATTGCGGT+TGG | 0.473250 | 8.1:-38544744 | None:intergenic |
| CGAAAAGCATTCCTTCTCTC+AGG | 0.474072 | 8.1:-38542439 | None:intergenic |
| CTATTAATGCAGTGGATGAC+GGG | 0.487601 | 8.1:+38544772 | MS.gene009073:CDS |
| AAGTTCTATCATGTCACGTT+TGG | 0.491658 | 8.1:+38544148 | MS.gene009073:CDS |
| CTGGTACAACAGTATTGATA+AGG | 0.497909 | 8.1:-38544335 | None:intergenic |
| GCTATTAATGCAGTGGATGA+CGG | 0.498064 | 8.1:+38544771 | MS.gene009073:CDS |
| TGAGAACCCGAATTGCGGTT+GGG | 0.503855 | 8.1:-38544743 | None:intergenic |
| AAGAAACAATCAAATGGTGT+AGG | 0.506674 | 8.1:+38544703 | MS.gene009073:CDS |
| TCATGATCAGAATAACCATC+TGG | 0.512939 | 8.1:-38543193 | None:intergenic |
| CTTTGGCCAAACTGGTCCTA+AGG | 0.517904 | 8.1:+38543974 | MS.gene009073:CDS |
| TTGATGTTGGAGAGGAAACA+AGG | 0.525526 | 8.1:-38542027 | None:intergenic |
| CTTGGCAATTCCTTCACCAA+CGG | 0.525754 | 8.1:-38542200 | None:intergenic |
| GCTGTTGAAGCAGAGAAAAT+GGG | 0.526704 | 8.1:+38544312 | MS.gene009073:CDS |
| TTCAGATGATGATGAAGGAA+AGG | 0.527599 | 8.1:+38542150 | MS.gene009073:CDS |
| GTTGGTGTCATCATTCTCAC+TGG | 0.529021 | 8.1:+38542520 | MS.gene009073:CDS |
| ATTCCTTCAGATGATGATGA+AGG | 0.536133 | 8.1:+38542145 | MS.gene009073:CDS |
| TGGAGAGGAAACAAGGTGGT+TGG | 0.539271 | 8.1:-38542020 | None:intergenic |
| GGTGGTGGTGATATTGATGT+TGG | 0.539487 | 8.1:-38542040 | None:intergenic |
| AACCGCAATTCGGGTTCTCA+AGG | 0.543466 | 8.1:+38544746 | MS.gene009073:CDS |
| AGAAACAATCAAATGGTGTA+GGG | 0.550444 | 8.1:+38544704 | MS.gene009073:CDS |
| TTTCCTTCATCATCATCTGA+AGG | 0.551061 | 8.1:-38542148 | None:intergenic |
| AAGGTTGGGAGCTTTGATGC+TGG | 0.551127 | 8.1:+38544119 | MS.gene009073:intron |
| CAGGTTGCAGGGTATGCTGT+TGG | 0.551508 | 8.1:+38543894 | MS.gene009073:intron |
| CAGGGTATGCTGTTGGAGGA+GGG | 0.554607 | 8.1:+38543901 | MS.gene009073:CDS |
| GGCACTGAAGAAGCAAATGA+AGG | 0.554741 | 8.1:+38544983 | MS.gene009073:CDS |
| CATCTGGAGTCCTCAAGGCT+TGG | 0.556853 | 8.1:-38543177 | None:intergenic |
| GATAGCATTATCTGCTGCAA+TGG | 0.558797 | 8.1:-38543952 | None:intergenic |
| TATGAGAAATCCGTTGGTGA+AGG | 0.569437 | 8.1:+38542190 | MS.gene009073:CDS |
| TAACATTAACACAGGTTGCA+GGG | 0.569695 | 8.1:+38543883 | MS.gene009073:intron |
| GTTGCAGGGTATGCTGTTGG+AGG | 0.577134 | 8.1:+38543897 | MS.gene009073:CDS |
| GCTAGAGATGATCCCTCTGT+TGG | 0.578549 | 8.1:+38542502 | MS.gene009073:CDS |
| ATAACCATCTGGAGTCCTCA+AGG | 0.585989 | 8.1:-38543182 | None:intergenic |
| AAGGAAATAAGTTGAGGTGG+TGG | 0.591859 | 8.1:-38542055 | None:intergenic |
| GTGAAATGTGGTTTCTCACA+AGG | 0.596317 | 8.1:+38544280 | MS.gene009073:CDS |
| GGAACAGATGCGTTCTGTAG+TGG | 0.596532 | 8.1:+38543148 | MS.gene009073:CDS |
| CGTTGGTGAAGGAATTGCCA+AGG | 0.597323 | 8.1:+38542201 | MS.gene009073:CDS |
| CAAGGCAGCTATTAATGCAG+TGG | 0.600034 | 8.1:+38544764 | MS.gene009073:CDS |
| TGTCATCATTCTCACTGGAA+AGG | 0.600797 | 8.1:+38542525 | MS.gene009073:CDS |
| TTCCAAACAACATCATGAGA+AGG | 0.606798 | 8.1:-38542118 | None:intergenic |
| TGCCTTGAGAACCCGAATTG+CGG | 0.609132 | 8.1:-38544748 | None:intergenic |
| GCAGTGGATGACGGGCACGC+TGG | 0.611049 | 8.1:+38544780 | MS.gene009073:CDS |
| TGTCAATTATAGGAAATGGG+TGG | 0.612210 | 8.1:+38544938 | MS.gene009073:intron |
| CACAAGGAAATAAGTTGAGG+TGG | 0.624126 | 8.1:-38542058 | None:intergenic |
| AGAATGATGACACCAACAGA+GGG | 0.629795 | 8.1:-38542514 | None:intergenic |
| CAAGCCTTGAGGACTCCAGA+TGG | 0.630119 | 8.1:+38543178 | MS.gene009073:CDS |
| TCCAAAACCAGTAATTGCAA+TGG | 0.632257 | 8.1:+38543791 | MS.gene009073:CDS |
| GAGAATGATGACACCAACAG+AGG | 0.638786 | 8.1:-38542515 | None:intergenic |
| ATCAGCTCCTTAATCGTGTG+AGG | 0.645905 | 8.1:-38542463 | None:intergenic |
| GTATTAATAGGCCTGAGAGA+AGG | 0.646223 | 8.1:+38542428 | MS.gene009073:CDS |
| TGACACAAGGAAATAAGTTG+AGG | 0.649038 | 8.1:-38542061 | None:intergenic |
| ATTGTCTATGAGAAATCCGT+TGG | 0.649414 | 8.1:+38542184 | MS.gene009073:CDS |
| ACAGATGCGTTCTGTAGTGG+TGG | 0.672100 | 8.1:+38543151 | MS.gene009073:CDS |
| TGGTGATATTGATGTTGGAG+AGG | 0.678621 | 8.1:-38542035 | None:intergenic |
| GCGTCTTCGCTCCATATATG+CGG | 0.682881 | 8.1:-38545011 | None:intergenic |
| GTAACTTGAAGTGTGACACA+AGG | 0.684211 | 8.1:-38542074 | None:intergenic |
| GAACATCACCATGAACACGT+TGG | 0.725959 | 8.1:-38542096 | None:intergenic |
| ATGTTGGAGAGGAAACAAGG+TGG | 0.769684 | 8.1:-38542024 | None:intergenic |
| GTGGTGGTGACCAAGCCTTG+AGG | 0.785466 | 8.1:+38543167 | MS.gene009073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAATAACTTCAAATA+TGG | - | chr8.1:38542336-38542355 | None:intergenic | 10.0% |
| !!! | ATATATTGTCTTTAAAATTA+TGG | + | chr8.1:38543503-38543522 | MS.gene009073:intron | 10.0% |
| !! | TACAAATGTTAAAATGAAAA+TGG | - | chr8.1:38544015-38544034 | None:intergenic | 15.0% |
| !! | TATTAAACTTAGAAAAATCT+GGG | - | chr8.1:38545036-38545055 | None:intergenic | 15.0% |
| !! | TTACAAAACAATAAAGTAAA+TGG | - | chr8.1:38542570-38542589 | None:intergenic | 15.0% |
| !!! | AATTCAACATTGATATTTTA+TGG | + | chr8.1:38544962-38544981 | MS.gene009073:CDS | 15.0% |
| !! | CTATTAAACTTAGAAAAATC+TGG | - | chr8.1:38545037-38545056 | None:intergenic | 20.0% |
| !! | TAGAAAAAGAAACAATCAAA+TGG | + | chr8.1:38544697-38544716 | MS.gene009073:CDS | 20.0% |
| !! | TATTCTGATCATGAAAATAT+CGG | + | chr8.1:38543202-38543221 | MS.gene009073:CDS | 20.0% |
| !! | TTATGTCAATTATAGGAAAT+GGG | + | chr8.1:38544935-38544954 | MS.gene009073:intron | 20.0% |
| !! | TTTATGTCAATTATAGGAAA+TGG | + | chr8.1:38544934-38544953 | MS.gene009073:intron | 20.0% |
| !!! | AAGCACATTTTTTTATCTTT+TGG | - | chr8.1:38544231-38544250 | None:intergenic | 20.0% |
| !!! | AATGATATATTGATGATGTA+GGG | + | chr8.1:38543127-38543146 | MS.gene009073:intron | 20.0% |
| !!! | ACAATATATCAGTTTTTCAT+TGG | - | chr8.1:38543492-38543511 | None:intergenic | 20.0% |
| !!! | ATTTTTCTCATTACAAATCA+TGG | - | chr8.1:38543673-38543692 | None:intergenic | 20.0% |
| !!! | CATTATTAAACTTGTTTTAG+TGG | + | chr8.1:38544816-38544835 | MS.gene009073:intron | 20.0% |
| !!! | GTTGTTTTTATGTCAATTAT+AGG | + | chr8.1:38544928-38544947 | MS.gene009073:intron | 20.0% |
| !!! | TAATGATATATTGATGATGT+AGG | + | chr8.1:38543126-38543145 | MS.gene009073:intron | 20.0% |
| !!! | TAATTTTAGTTTCTCCTTTA+AGG | + | chr8.1:38544398-38544417 | MS.gene009073:intron | 20.0% |
| !!! | TAGAAAAATCTGGAATAAAT+CGG | - | chr8.1:38543260-38543279 | None:intergenic | 20.0% |
| !!! | TTTTGCAGATTAGTATTAAT+AGG | + | chr8.1:38542416-38542435 | MS.gene009073:intron | 20.0% |
| ! | AAGCAAAAAGAAAATGAGAA+AGG | - | chr8.1:38542238-38542257 | None:intergenic | 25.0% |
| ! | AATTCCAAACATAACCTTAA+AGG | - | chr8.1:38544415-38544434 | None:intergenic | 25.0% |
| ! | AATTTGAGGACTAAATTAAC+CGG | - | chr8.1:38543431-38543450 | None:intergenic | 25.0% |
| ! | ATAATGATTGGATTAACAAG+TGG | - | chr8.1:38542637-38542656 | None:intergenic | 25.0% |
| ! | GAGACTGTTTGTATAATTTA+GGG | + | chr8.1:38542369-38542388 | MS.gene009073:intron | 25.0% |
| ! | TCAAATATGGCAATTCAAAA+TGG | - | chr8.1:38542323-38542342 | None:intergenic | 25.0% |
| ! | TCTACTAAATTAGAGAACAT+TGG | - | chr8.1:38543558-38543577 | None:intergenic | 25.0% |
| ! | TGAGACTGTTTGTATAATTT+AGG | + | chr8.1:38542368-38542387 | MS.gene009073:intron | 25.0% |
| ! | TGCTGATAAAATAAAACCAA+TGG | - | chr8.1:38542750-38542769 | None:intergenic | 25.0% |
| ! | TTCACACAAATAGAAAAATC+TGG | - | chr8.1:38543270-38543289 | None:intergenic | 25.0% |
| ! | TTCATTATCATTGTATTGCA+TGG | + | chr8.1:38544577-38544596 | MS.gene009073:intron | 25.0% |
| ! | TTTCTCAAACAACATTATAC+TGG | - | chr8.1:38543376-38543395 | None:intergenic | 25.0% |
| !! | ACTAGTTGTATGATAATGAT+TGG | - | chr8.1:38542649-38542668 | None:intergenic | 25.0% |
| !! | TTATTTGCTAACATTAACAC+AGG | + | chr8.1:38543875-38543894 | MS.gene009073:intron | 25.0% |
| !!! | ATTGTTATTTCTCCAATTTG+AGG | + | chr8.1:38543582-38543601 | MS.gene009073:intron | 25.0% |
| !!! | GTATCTCTTTGTTATTTTTG+AGG | + | chr8.1:38543314-38543333 | MS.gene009073:intron | 25.0% |
| !!! | GTTAATGCAATGTTTTGATT+TGG | + | chr8.1:38544659-38544678 | MS.gene009073:intron | 25.0% |
| !!! | TTGTTATTTCTCCAATTTGA+GGG | + | chr8.1:38543583-38543602 | MS.gene009073:intron | 25.0% |
| AAAAATGTGCTTCTCAATAC+AGG | + | chr8.1:38544239-38544258 | MS.gene009073:intron | 30.0% | |
| AAAATTATGGTGCTTGATTC+TGG | + | chr8.1:38543516-38543535 | MS.gene009073:intron | 30.0% | |
| AAAGAGATACCTTGAGTAAT+GGG | - | chr8.1:38543304-38543323 | None:intergenic | 30.0% | |
| AACCATTCAATTCTGCATTA+AGG | - | chr8.1:38543105-38543124 | None:intergenic | 30.0% | |
| AAGAAACAATCAAATGGTGT+AGG | + | chr8.1:38544703-38544722 | MS.gene009073:CDS | 30.0% | |
| AGAAACAATCAAATGGTGTA+GGG | + | chr8.1:38544704-38544723 | MS.gene009073:CDS | 30.0% | |
| AGATGTTACAAAAGACGAAA+AGG | - | chr8.1:38544083-38544102 | None:intergenic | 30.0% | |
| AGGAGAAACTAAAATTACAG+TGG | - | chr8.1:38544395-38544414 | None:intergenic | 30.0% | |
| ATATGCATACATATGCTCTA+AGG | - | chr8.1:38544903-38544922 | None:intergenic | 30.0% | |
| ATCATATGATGCTTTCAGTA+CGG | + | chr8.1:38542852-38542871 | MS.gene009073:intron | 30.0% | |
| ATCCTTAATGCAGAATTGAA+TGG | + | chr8.1:38543100-38543119 | MS.gene009073:intron | 30.0% | |
| ATGTTACAAAAGACGAAAAG+GGG | - | chr8.1:38544081-38544100 | None:intergenic | 30.0% | |
| CAAAAAGAAAATGAGAAAGG+TGG | - | chr8.1:38542235-38542254 | None:intergenic | 30.0% | |
| GATGTTACAAAAGACGAAAA+GGG | - | chr8.1:38544082-38544101 | None:intergenic | 30.0% | |
| TAAGTCACATGACAAGTTAA+TGG | - | chr8.1:38542675-38542694 | None:intergenic | 30.0% | |
| TATGCATACATATGCTCTAA+GGG | - | chr8.1:38544902-38544921 | None:intergenic | 30.0% | |
| TCATGAAATGATCAACTTGA+TGG | + | chr8.1:38542806-38542825 | MS.gene009073:intron | 30.0% | |
| ! | ATTGGTTTCAACTGATGTTA+GGG | - | chr8.1:38543474-38543493 | None:intergenic | 30.0% |
| ! | GTCTAAGTTGAAGAAATGTT+GGG | + | chr8.1:38542391-38542410 | MS.gene009073:intron | 30.0% |
| ! | GTTTTCAAAACCAAACCATA+CGG | + | chr8.1:38542887-38542906 | MS.gene009073:intron | 30.0% |
| ! | TCATTCTTTTCTCCTATTAC+AGG | + | chr8.1:38543752-38543771 | MS.gene009073:intron | 30.0% |
| ! | TCTTGTCTTTGTATCGATAA+AGG | + | chr8.1:38544100-38544119 | MS.gene009073:intron | 30.0% |
| ! | TCTTTGTATCGATAAAGGTT+GGG | + | chr8.1:38544105-38544124 | MS.gene009073:intron | 30.0% |
| ! | TTACAATTTGACGGACAAAA+AGG | - | chr8.1:38543405-38543424 | None:intergenic | 30.0% |
| ! | TTTTGTCCGTCAAATTGTAA+GGG | + | chr8.1:38543405-38543424 | MS.gene009073:intron | 30.0% |
| ! | TTTTTGTCCGTCAAATTGTA+AGG | + | chr8.1:38543404-38543423 | MS.gene009073:intron | 30.0% |
| !! | TTATTTTATAGGGCATGTTG+AGG | + | chr8.1:38542593-38542612 | MS.gene009073:intron | 30.0% |
| !! | TTCTCCTTTAAGGTTATGTT+TGG | + | chr8.1:38544408-38544427 | MS.gene009073:intron | 30.0% |
| !! | TTGTTTTGTTCAAGTGACTT+TGG | + | chr8.1:38542719-38542738 | MS.gene009073:intron | 30.0% |
| !!! | TTTTGAGGCATTCATTTCAA+TGG | + | chr8.1:38543329-38543348 | MS.gene009073:intron | 30.0% |
| AAAGTGATTCCCATTACTCA+AGG | + | chr8.1:38543292-38543311 | MS.gene009073:intron | 35.0% | |
| AAGAAAATGAGAAAGGTGGA+AGG | - | chr8.1:38542231-38542250 | None:intergenic | 35.0% | |
| AAGTTCTATCATGTCACGTT+TGG | + | chr8.1:38544148-38544167 | MS.gene009073:CDS | 35.0% | |
| ACTATTACTCTCTCTTAGCT+AGG | + | chr8.1:38542296-38542315 | MS.gene009073:intron | 35.0% | |
| AGTGACTTTGGATATTCCAT+TGG | + | chr8.1:38542731-38542750 | MS.gene009073:intron | 35.0% | |
| ATTGTCTATGAGAAATCCGT+TGG | + | chr8.1:38542184-38542203 | MS.gene009073:CDS | 35.0% | |
| CAAAGAGATACCTTGAGTAA+TGG | - | chr8.1:38543305-38543324 | None:intergenic | 35.0% | |
| GATAGTACCATTGCAATTAC+TGG | - | chr8.1:38543801-38543820 | None:intergenic | 35.0% | |
| GTCTTAAGTGACAAACTACA+TGG | - | chr8.1:38543073-38543092 | None:intergenic | 35.0% | |
| GTGCACAAAAAAGTGAGATT+TGG | - | chr8.1:38543834-38543853 | None:intergenic | 35.0% | |
| GTTTCTCACAAGGTTCTATA+CGG | + | chr8.1:38544290-38544309 | MS.gene009073:CDS | 35.0% | |
| TAACATTAACACAGGTTGCA+GGG | + | chr8.1:38543883-38543902 | MS.gene009073:intron | 35.0% | |
| TAGTCCTCAAATTCACGAAA+TGG | + | chr8.1:38543438-38543457 | MS.gene009073:intron | 35.0% | |
| TCATGATCAGAATAACCATC+TGG | - | chr8.1:38543196-38543215 | None:intergenic | 35.0% | |
| TCCAAAACCAGTAATTGCAA+TGG | + | chr8.1:38543791-38543810 | MS.gene009073:CDS | 35.0% | |
| TGAAGGAAAAACCGCATATA+TGG | + | chr8.1:38545000-38545019 | MS.gene009073:CDS | 35.0% | |
| TGACACAAGGAAATAAGTTG+AGG | - | chr8.1:38542064-38542083 | None:intergenic | 35.0% | |
| TGAGTGTTCTATGAATGGAA+TGG | - | chr8.1:38544372-38544391 | None:intergenic | 35.0% | |
| TGTCAATTATAGGAAATGGG+TGG | + | chr8.1:38544938-38544957 | MS.gene009073:intron | 35.0% | |
| TTCCAAACAACATCATGAGA+AGG | - | chr8.1:38542121-38542140 | None:intergenic | 35.0% | |
| TTCCTTCTCATGATGTTGTT+TGG | + | chr8.1:38542116-38542135 | MS.gene009073:CDS | 35.0% | |
| TTGGTTTCAACTGATGTTAG+GGG | - | chr8.1:38543473-38543492 | None:intergenic | 35.0% | |
| TTTCATGACAAGTGACAACA+TGG | - | chr8.1:38542794-38542813 | None:intergenic | 35.0% | |
| TTTCCTTCATCATCATCTGA+AGG | - | chr8.1:38542151-38542170 | None:intergenic | 35.0% | |
| ! | AAATAATTTGCAGCTGCAGA+AGG | - | chr8.1:38543861-38543880 | None:intergenic | 35.0% |
| ! | ATTCCTTCAGATGATGATGA+AGG | + | chr8.1:38542145-38542164 | MS.gene009073:CDS | 35.0% |
| ! | ATTGCCATTTCGTGAATTTG+AGG | - | chr8.1:38543445-38543464 | None:intergenic | 35.0% |
| ! | CTAAAAAAGCACGTGAAATG+TGG | + | chr8.1:38544268-38544287 | MS.gene009073:CDS | 35.0% |
| ! | GCAAATTATTGAAGCACCTT+AGG | - | chr8.1:38543993-38544012 | None:intergenic | 35.0% |
| ! | GGTCTAAGTTGAAGAAATGT+TGG | + | chr8.1:38542390-38542409 | MS.gene009073:intron | 35.0% |
| ! | GTCTTTGTATCGATAAAGGT+TGG | + | chr8.1:38544104-38544123 | MS.gene009073:intron | 35.0% |
| ! | TTCAGATGATGATGAAGGAA+AGG | + | chr8.1:38542150-38542169 | MS.gene009073:CDS | 35.0% |
| ! | TTCTCATGATGTTGTTTGGA+AGG | + | chr8.1:38542120-38542139 | MS.gene009073:CDS | 35.0% |
| !! | CATTGGTTTCAACTGATGTT+AGG | - | chr8.1:38543475-38543494 | None:intergenic | 35.0% |
| !! | CTGGTACAACAGTATTGATA+AGG | - | chr8.1:38544338-38544357 | None:intergenic | 35.0% |
| !!! | ACCATTGCAATTACTGGTTT+TGG | - | chr8.1:38543795-38543814 | None:intergenic | 35.0% |
| !!! | CACATTTCACGTGCTTTTTT+AGG | - | chr8.1:38544270-38544289 | None:intergenic | 35.0% |
| !!! | TTGCAATTACTGGTTTTGGA+AGG | - | chr8.1:38543791-38543810 | None:intergenic | 35.0% |
| AATGCTATCTTTGGCCAAAC+TGG | + | chr8.1:38543966-38543985 | MS.gene009073:CDS | 40.0% | |
| AGAATGATGACACCAACAGA+GGG | - | chr8.1:38542517-38542536 | None:intergenic | 40.0% | |
| AGTGGTGAGTGTTCTATGAA+TGG | - | chr8.1:38544377-38544396 | None:intergenic | 40.0% | |
| ATGTGCTTCTCAATACAGGT+AGG | + | chr8.1:38544243-38544262 | MS.gene009073:intron | 40.0% | |
| CCTGCAAGTCTAACACATTA+AGG | - | chr8.1:38543231-38543250 | None:intergenic | 40.0% | |
| CCTTAATGTGTTAGACTTGC+AGG | + | chr8.1:38543228-38543247 | MS.gene009073:CDS | 40.0% | |
| CCTTGAACTAGACTTTACTG+CGG | + | chr8.1:38542924-38542943 | MS.gene009073:intron | 40.0% | |
| CTAACATTAACACAGGTTGC+AGG | + | chr8.1:38543882-38543901 | MS.gene009073:intron | 40.0% | |
| CTATTAATGCAGTGGATGAC+GGG | + | chr8.1:38544772-38544791 | MS.gene009073:CDS | 40.0% | |
| GATAGCATTATCTGCTGCAA+TGG | - | chr8.1:38543955-38543974 | None:intergenic | 40.0% | |
| GCAGCAGATAATGCTATCTT+TGG | + | chr8.1:38543957-38543976 | MS.gene009073:CDS | 40.0% | |
| GCTATTAATGCAGTGGATGA+CGG | + | chr8.1:38544771-38544790 | MS.gene009073:CDS | 40.0% | |
| GCTGTTGAAGCAGAGAAAAT+GGG | + | chr8.1:38544312-38544331 | MS.gene009073:CDS | 40.0% | |
| GGATTTGAACTGCTTGAACT+TGG | - | chr8.1:38542967-38542986 | None:intergenic | 40.0% | |
| GGCAATTTAGTCCCTCAAAT+TGG | - | chr8.1:38543597-38543616 | None:intergenic | 40.0% | |
| GTAAATGGCAGTAGCAGAAA+AGG | - | chr8.1:38542555-38542574 | None:intergenic | 40.0% | |
| GTAACTTGAAGTGTGACACA+AGG | - | chr8.1:38542077-38542096 | None:intergenic | 40.0% | |
| GTATTAATAGGCCTGAGAGA+AGG | + | chr8.1:38542428-38542447 | MS.gene009073:CDS | 40.0% | |
| GTGAAATGTGGTTTCTCACA+AGG | + | chr8.1:38544280-38544299 | MS.gene009073:CDS | 40.0% | |
| TACAAAAGACGAAAAGGGGA+TGG | - | chr8.1:38544077-38544096 | None:intergenic | 40.0% | |
| TCAAGTTACCAACGTGTTCA+TGG | + | chr8.1:38542088-38542107 | MS.gene009073:CDS | 40.0% | |
| TGGAATGGAAAGAAGCTTAC+TGG | - | chr8.1:38544357-38544376 | None:intergenic | 40.0% | |
| TGGTGATATTGATGTTGGAG+AGG | - | chr8.1:38542038-38542057 | None:intergenic | 40.0% | |
| TGTCATCATTCTCACTGGAA+AGG | + | chr8.1:38542525-38542544 | MS.gene009073:CDS | 40.0% | |
| TTGATGTTGGAGAGGAAACA+AGG | - | chr8.1:38542030-38542049 | None:intergenic | 40.0% | |
| ! | AAGGAAATAAGTTGAGGTGG+TGG | - | chr8.1:38542058-38542077 | None:intergenic | 40.0% |
| ! | AGGAGGGCATATATTGCATA+TGG | + | chr8.1:38543917-38543936 | MS.gene009073:CDS | 40.0% |
| ! | AGTCTAGTTCAAGGTTCAAC+CGG | - | chr8.1:38542918-38542937 | None:intergenic | 40.0% |
| ! | CACAAGGAAATAAGTTGAGG+TGG | - | chr8.1:38542061-38542080 | None:intergenic | 40.0% |
| ! | TATGAGAAATCCGTTGGTGA+AGG | + | chr8.1:38542190-38542209 | MS.gene009073:CDS | 40.0% |
| ! | TTTTCGACCTCACACGATTA+AGG | + | chr8.1:38542456-38542475 | MS.gene009073:CDS | 40.0% |
| !! | CATACATATGCTCTAAGGGA+AGG | - | chr8.1:38544898-38544917 | None:intergenic | 40.0% |
| !! | CCTTTGACTTGAGACTTGTT+GGG | - | chr8.1:38543618-38543637 | None:intergenic | 40.0% |
| !! | TCCTTTGACTTGAGACTTGT+TGG | - | chr8.1:38543619-38543638 | None:intergenic | 40.0% |
| !!! | CAATTACTGGTTTTGGAAGG+CGG | - | chr8.1:38543788-38543807 | None:intergenic | 40.0% |
| AAATAGCCCAACCGCAATTC+GGG | + | chr8.1:38544737-38544756 | MS.gene009073:CDS | 45.0% | |
| AACCGGCCCTTACAATTTGA+CGG | - | chr8.1:38543414-38543433 | None:intergenic | 45.0% | |
| ACCAAACCATACGGTTCAAC+CGG | + | chr8.1:38542896-38542915 | MS.gene009073:intron | 45.0% | |
| AGACATTCGAACGCGAGAAA+TGG | - | chr8.1:38544449-38544468 | None:intergenic | 45.0% | |
| ATCAGCTCCTTAATCGTGTG+AGG | - | chr8.1:38542466-38542485 | None:intergenic | 45.0% | |
| ATGTTGGAGAGGAAACAAGG+TGG | - | chr8.1:38542027-38542046 | None:intergenic | 45.0% | |
| ATTCGAACGCGAGAAATGGA+AGG | - | chr8.1:38544445-38544464 | None:intergenic | 45.0% | |
| CAAGGCAGCTATTAATGCAG+TGG | + | chr8.1:38544764-38544783 | MS.gene009073:CDS | 45.0% | |
| CCCAACAAGTCTCAAGTCAA+AGG | + | chr8.1:38543615-38543634 | MS.gene009073:intron | 45.0% | |
| CTTGGCAATTCCTTCACCAA+CGG | - | chr8.1:38542203-38542222 | None:intergenic | 45.0% | |
| GAAATAGCCCAACCGCAATT+CGG | + | chr8.1:38544736-38544755 | MS.gene009073:CDS | 45.0% | |
| GAACATCACCATGAACACGT+TGG | - | chr8.1:38542099-38542118 | None:intergenic | 45.0% | |
| GAGAATGATGACACCAACAG+AGG | - | chr8.1:38542518-38542537 | None:intergenic | 45.0% | |
| GCTTGAACTTGGACGAAACT+GGG | - | chr8.1:38542956-38542975 | None:intergenic | 45.0% | |
| GGCTGTTGAAGCAGAGAAAA+TGG | + | chr8.1:38544311-38544330 | MS.gene009073:CDS | 45.0% | |
| TGCTTGAACTTGGACGAAAC+TGG | - | chr8.1:38542957-38542976 | None:intergenic | 45.0% | |
| ! | ATAACCATCTGGAGTCCTCA+AGG | - | chr8.1:38543185-38543204 | None:intergenic | 45.0% |
| ! | CCGCAGTAAAGTCTAGTTCA+AGG | - | chr8.1:38542927-38542946 | None:intergenic | 45.0% |
| ! | CTATCATGTCACGTTTGGTG+AGG | + | chr8.1:38544153-38544172 | MS.gene009073:intron | 45.0% |
| ! | GGCACTGAAGAAGCAAATGA+AGG | + | chr8.1:38544983-38545002 | MS.gene009073:CDS | 45.0% |
| ! | GGTGGTGGTGATATTGATGT+TGG | - | chr8.1:38542043-38542062 | None:intergenic | 45.0% |
| !! | CGAAAAGCATTCCTTCTCTC+AGG | - | chr8.1:38542442-38542461 | None:intergenic | 45.0% |
| !! | GTTGGTGTCATCATTCTCAC+TGG | + | chr8.1:38542520-38542539 | MS.gene009073:CDS | 45.0% |
| !!! | TTTGTAAAATTTATTTTATA+GGG | + | chr8.1:38542583-38542602 | MS.gene009073:intron | 5.0% |
| !!! | TTTTGTAAAATTTATTTTAT+AGG | + | chr8.1:38542582-38542601 | MS.gene009073:intron | 5.0% |
| AATCCGTTGACGTGACTCAG+AGG | + | chr8.1:38542982-38543001 | MS.gene009073:intron | 50.0% | |
| ACAGATGCGTTCTGTAGTGG+TGG | + | chr8.1:38543151-38543170 | MS.gene009073:CDS | 50.0% | |
| ACCGGTTGAACCGTATGGTT+TGG | - | chr8.1:38542900-38542919 | None:intergenic | 50.0% | |
| AGACCTCTGAGTCACGTCAA+CGG | - | chr8.1:38542988-38543007 | None:intergenic | 50.0% | |
| CTTTGGCCAAACTGGTCCTA+AGG | + | chr8.1:38543974-38543993 | MS.gene009073:CDS | 50.0% | |
| GAAAGGTGGAAGGACAACCT+TGG | - | chr8.1:38542221-38542240 | None:intergenic | 50.0% | |
| GCGTCTTCGCTCCATATATG+CGG | - | chr8.1:38545014-38545033 | None:intergenic | 50.0% | |
| GCTAGAGATGATCCCTCTGT+TGG | + | chr8.1:38542502-38542521 | MS.gene009073:CDS | 50.0% | |
| GGAACAGATGCGTTCTGTAG+TGG | + | chr8.1:38543148-38543167 | MS.gene009073:CDS | 50.0% | |
| GGCGAATCTGCACCTGTAAT+AGG | - | chr8.1:38543767-38543786 | None:intergenic | 50.0% | |
| GGGCATGTTGAGGCAAGAAA+TGG | + | chr8.1:38542603-38542622 | MS.gene009073:intron | 50.0% | |
| GTCCGTCAAATTGTAAGGGC+CGG | + | chr8.1:38543409-38543428 | MS.gene009073:intron | 50.0% | |
| GTTCAACCGGTTGAACCGTA+TGG | - | chr8.1:38542905-38542924 | None:intergenic | 50.0% | |
| TGAGAACCCGAATTGCGGTT+GGG | - | chr8.1:38544746-38544765 | None:intergenic | 50.0% | |
| TGCCTTGAGAACCCGAATTG+CGG | - | chr8.1:38544751-38544770 | None:intergenic | 50.0% | |
| TGGAGAGGAAACAAGGTGGT+TGG | - | chr8.1:38542023-38542042 | None:intergenic | 50.0% | |
| TTGAGAACCCGAATTGCGGT+TGG | - | chr8.1:38544747-38544766 | None:intergenic | 50.0% | |
| ! | AACCGCAATTCGGGTTCTCA+AGG | + | chr8.1:38544746-38544765 | MS.gene009073:CDS | 50.0% |
| ! | AAGGTTGGGAGCTTTGATGC+TGG | + | chr8.1:38544119-38544138 | MS.gene009073:intron | 50.0% |
| ! | CGTTGGTGAAGGAATTGCCA+AGG | + | chr8.1:38542201-38542220 | MS.gene009073:CDS | 50.0% |
| ! | GAAGCACCTTAGGACCAGTT+TGG | - | chr8.1:38543983-38544002 | None:intergenic | 50.0% |
| ! | GGGAGCTTTGATGCTGGTTA+TGG | + | chr8.1:38544125-38544144 | MS.gene009073:CDS | 50.0% |
| CAAGCCTTGAGGACTCCAGA+TGG | + | chr8.1:38543178-38543197 | MS.gene009073:CDS | 55.0% | |
| CAGGGTATGCTGTTGGAGGA+GGG | + | chr8.1:38543901-38543920 | MS.gene009073:CDS | 55.0% | |
| CAGGTTGCAGGGTATGCTGT+TGG | + | chr8.1:38543894-38543913 | MS.gene009073:intron | 55.0% | |
| GTTGCAGGGTATGCTGTTGG+AGG | + | chr8.1:38543897-38543916 | MS.gene009073:CDS | 55.0% | |
| ! | CATCTGGAGTCCTCAAGGCT+TGG | - | chr8.1:38543180-38543199 | None:intergenic | 55.0% |
| GCAGGGTATGCTGTTGGAGG+AGG | + | chr8.1:38543900-38543919 | MS.gene009073:CDS | 60.0% | |
| ! | GTGGTGGTGACCAAGCCTTG+AGG | + | chr8.1:38543167-38543186 | MS.gene009073:CDS | 60.0% |
| ! | TGACGGGCACGCTGGACTTC+AGG | + | chr8.1:38544788-38544807 | MS.gene009073:CDS | 65.0% |
| !! | GCAGTGGATGACGGGCACGC+TGG | + | chr8.1:38544780-38544799 | MS.gene009073:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38541968 | 38545066 | 38541968 | ID=MS.gene009073 |
| chr8.1 | mRNA | 38541968 | 38545066 | 38541968 | ID=MS.gene009073.t1;Parent=MS.gene009073 |
| chr8.1 | exon | 38541968 | 38542222 | 38541968 | ID=MS.gene009073.t1.exon1;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38541968 | 38542222 | 38541968 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38542424 | 38542546 | 38542424 | ID=MS.gene009073.t1.exon2;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38542424 | 38542546 | 38542424 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38543148 | 38543249 | 38543148 | ID=MS.gene009073.t1.exon3;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38543148 | 38543249 | 38543148 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38543774 | 38543812 | 38543774 | ID=MS.gene009073.t1.exon4;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38543774 | 38543812 | 38543774 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38543897 | 38543995 | 38543897 | ID=MS.gene009073.t1.exon5;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38543897 | 38543995 | 38543897 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38544122 | 38544169 | 38544122 | ID=MS.gene009073.t1.exon6;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38544122 | 38544169 | 38544122 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38544261 | 38544356 | 38544261 | ID=MS.gene009073.t1.exon7;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38544261 | 38544356 | 38544261 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38544687 | 38544809 | 38544687 | ID=MS.gene009073.t1.exon8;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38544687 | 38544809 | 38544687 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| chr8.1 | exon | 38544950 | 38545066 | 38544950 | ID=MS.gene009073.t1.exon9;Parent=MS.gene009073.t1 |
| chr8.1 | CDS | 38544950 | 38545066 | 38544950 | ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1 |
| Gene Sequence |
| Protein sequence |
