AlfalfaGEDB | MS.gene009073

M. sativa cultivar XinJiangDaYe / MS.gene009073

KEGG: K01661
GO: GO:0003674 GO:0003824 GO:0006732 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009233 GO:0009234 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663
PFAM: PF00378.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009073.t1	XP_013446016.1	96.7	333	6	1	1	333	1	328	1.50E-182	648.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009073.t1	Q8GYN9	76.4	339	72	4	1	333	1	337	9.7e-146	517.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009073.t1	A0A072TT65	96.7	333	6	1	1	333	1	328	1.1e-182	648.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009073	MS.gene034468	PPI
MS.gene009073	MS.gene43051	PPI
MS.gene009073	MS.gene050322	PPI
MS.gene009073	MS.gene007227	PPI
MS.gene009073	MS.gene84339	PPI
MS.gene009073	MS.gene35396	PPI
MS.gene66767	MS.gene009073	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009073.t1	MTR_8g064990	96.697	333	6	1	1	333	1	328	0.0	667
MS.gene009073.t1	MTR_8g064990	98.810	252	3	0	82	333	3	254	0.0	520
MS.gene009073.t1	MTR_4g122220	34.928	209	123	3	81	285	14	213	1.83e-26	105
MS.gene009073.t1	MTR_8g062585	85.417	48	7	0	160	207	30	77	5.75e-24	94.0
MS.gene009073.t1	MTR_4g100350	25.424	295	210	4	37	327	10	298	3.75e-21	92.0
MS.gene009073.t1	MTR_8g062580	91.304	46	4	0	250	295	8	53	4.95e-21	90.9
MS.gene009073.t1	MTR_3g085700	28.826	281	173	10	66	329	2	272	5.71e-20	88.6
MS.gene009073.t1	MTR_2027s0010	29.944	177	111	5	81	252	8	176	1.71e-12	66.6
MS.gene009073.t1	MTR_8g010580	27.972	143	97	3	86	224	23	163	6.65e-11	63.2
MS.gene009073.t1	MTR_8g010580	27.972	143	97	3	86	224	23	163	9.56e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009073.t1	AT1G60550	76.401	339	72	4	1	333	1	337	0.0	533
MS.gene009073.t1	AT4G16210	34.043	235	131	6	69	292	5	226	3.65e-28	110
MS.gene009073.t1	AT4G16800	29.435	248	171	3	82	327	54	299	2.66e-26	106
MS.gene009073.t1	AT5G43280	26.277	274	178	10	74	329	11	278	5.73e-13	68.6
MS.gene009073.t1	AT5G65940	29.439	214	126	7	73	275	12	211	3.54e-11	63.9
MS.gene009073.t1	AT5G65940	29.439	214	126	7	73	275	12	211	4.36e-11	63.9
MS.gene009073.t1	AT5G65940	29.439	214	126	7	73	275	12	211	4.36e-11	63.9
MS.gene009073.t1	AT5G65940	29.439	214	126	7	73	275	12	211	4.79e-11	63.5

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Find 80 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCCCAACCGCAATTC+GGG	0.383989	8.1:+38544737	MS.gene009073:CDS
AACCGCAATTCGGGTTCTCA+AGG	0.543466	8.1:+38544746	MS.gene009073:CDS
AAGAAACAATCAAATGGTGT+AGG	0.506674	8.1:+38544703	MS.gene009073:CDS
AAGGAAATAAGTTGAGGTGG+TGG	0.591859	8.1:-38542055	None:intergenic
AAGGTTGGGAGCTTTGATGC+TGG	0.551127	8.1:+38544119	MS.gene009073:intron
AAGTTCTATCATGTCACGTT+TGG	0.491658	8.1:+38544148	MS.gene009073:CDS
AATGCTATCTTTGGCCAAAC+TGG	0.368332	8.1:+38543966	MS.gene009073:CDS
ACAGATGCGTTCTGTAGTGG+TGG	0.672100	8.1:+38543151	MS.gene009073:CDS
ACCATTGCAATTACTGGTTT+TGG	0.240337	8.1:-38543792	None:intergenic
AGAAACAATCAAATGGTGTA+GGG	0.550444	8.1:+38544704	MS.gene009073:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTGCTTCTCAATAC+AGG	+	chr8.1:38544239-38544258	MS.gene009073:intron	30.0%
AAAATTATGGTGCTTGATTC+TGG	+	chr8.1:38543516-38543535	MS.gene009073:intron	30.0%
AAAGAGATACCTTGAGTAAT+GGG	-	chr8.1:38543304-38543323	None:intergenic	30.0%
AACCATTCAATTCTGCATTA+AGG	-	chr8.1:38543105-38543124	None:intergenic	30.0%
AAGAAACAATCAAATGGTGT+AGG	+	chr8.1:38544703-38544722	MS.gene009073:CDS	30.0%
AGAAACAATCAAATGGTGTA+GGG	+	chr8.1:38544704-38544723	MS.gene009073:CDS	30.0%
AGATGTTACAAAAGACGAAA+AGG	-	chr8.1:38544083-38544102	None:intergenic	30.0%
AGGAGAAACTAAAATTACAG+TGG	-	chr8.1:38544395-38544414	None:intergenic	30.0%
ATATGCATACATATGCTCTA+AGG	-	chr8.1:38544903-38544922	None:intergenic	30.0%
ATCATATGATGCTTTCAGTA+CGG	+	chr8.1:38542852-38542871	MS.gene009073:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	38541968	38545066	38541968	ID=MS.gene009073
chr8.1	mRNA	38541968	38545066	38541968	ID=MS.gene009073.t1;Parent=MS.gene009073
chr8.1	exon	38541968	38542222	38541968	ID=MS.gene009073.t1.exon1;Parent=MS.gene009073.t1
chr8.1	CDS	38541968	38542222	38541968	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38542424	38542546	38542424	ID=MS.gene009073.t1.exon2;Parent=MS.gene009073.t1
chr8.1	CDS	38542424	38542546	38542424	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38543148	38543249	38543148	ID=MS.gene009073.t1.exon3;Parent=MS.gene009073.t1
chr8.1	CDS	38543148	38543249	38543148	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38543774	38543812	38543774	ID=MS.gene009073.t1.exon4;Parent=MS.gene009073.t1
chr8.1	CDS	38543774	38543812	38543774	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38543897	38543995	38543897	ID=MS.gene009073.t1.exon5;Parent=MS.gene009073.t1
chr8.1	CDS	38543897	38543995	38543897	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38544122	38544169	38544122	ID=MS.gene009073.t1.exon6;Parent=MS.gene009073.t1
chr8.1	CDS	38544122	38544169	38544122	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38544261	38544356	38544261	ID=MS.gene009073.t1.exon7;Parent=MS.gene009073.t1
chr8.1	CDS	38544261	38544356	38544261	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38544687	38544809	38544687	ID=MS.gene009073.t1.exon8;Parent=MS.gene009073.t1
chr8.1	CDS	38544687	38544809	38544687	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1
chr8.1	exon	38544950	38545066	38544950	ID=MS.gene009073.t1.exon9;Parent=MS.gene009073.t1
chr8.1	CDS	38544950	38545066	38544950	ID=cds.MS.gene009073.t1;Parent=MS.gene009073.t1

Gene Sequence

>MS.gene009073

ATGGCAAACAACAAAGACATTGAAACAGTGATCAGAAGAGTCACTTCTGTAACCAACCACCTTGTTTCCTCTCCAACATCAATATCACCACCACCTCAACTTATTTCCTTGTGTCACACTTCAAGTTACCAACGTGTTCATGGTGATGTTCCTTCTCATGATGTTGTTTGGAAGGTTATTCCTTCAGATGATGATGAAGGAAAGGTTTTCACTGACATTGTCTATGAGAAATCCGTTGGTGAAGGAATTGCCAAGGTTGTCCTTCCACCTTTCTCATTTTCTTTTTGCTTCACGTTTTTGTAATTTAGTAAATATTTTAGTTACTCTAACTATTACTCTCTCTTAGCTAGGACCATTTTGAATTGCCATATTTGAAGTTATTTATTAACATAAGCACTTGTGAGACTGTTTGTATAATTTAGGGTCTAAGTTGAAGAAATGTTGGGAATTTTGCAGATTAGTATTAATAGGCCTGAGAGAAGGAATGCTTTTCGACCTCACACGATTAAGGAGCTGATTCGTGCTTTCAATGATGCTAGAGATGATCCCTCTGTTGGTGTCATCATTCTCACTGGAAAGGTATACCTTTTCTGCTACTGCCATTTACTTTATTGTTTTGTAAAATTTATTTTATAGGGCATGTTGAGGCAAGAAATGGATCAATTGCCACTTGTTAATCCAATCATTATCATACAACTAGTTCACCATTAACTTGTCATGTGACTTAAGCATGCTTTCAGTGATTATTAGATTGTTTTGTTCAAGTGACTTTGGATATTCCATTGGTTTTATTTTATCAGCAATTGACTCAGATATAAGCTTACCATGTTGTCACTTGTCATGAAATGATCAACTTGATGGAAACAATTATTGTTTCTTAAATAATCATATGATGCTTTCAGTACGGCTATAAATCAGTGTTTTCAAAACCAAACCATACGGTTCAACCGGTTGAACCTTGAACTAGACTTTACTGCGGTTTGATCCCAGTTTCGTCCAAGTTCAAGCAGTTCAAATCCGTTGACGTGACTCAGAGGTCTCGTCATTTCAATATTCGTTTCAATGTTTAAAACACTGCAATTAACATATATATATGATTTGACCATGTAGTTTGTCACTTAAGACACAATTGATCCTTAATGCAGAATTGAATGGTTTTAATGATATATTGATGATGTAGGGAACAGATGCGTTCTGTAGTGGTGGTGACCAAGCCTTGAGGACTCCAGATGGTTATTCTGATCATGAAAATATCGGTCGCCTTAATGTGTTAGACTTGCAGGTATATACCGATTTATTCCAGATTTTTCTATTTGTGTGAATGAAAGTGATTCCCATTACTCAAGGTATCTCTTTGTTATTTTTGAGGCATTCATTTCAATGGAGAATGAATCTTTTTTGTTTTCCAGTATAATGTTGTTTGAGAAAATCATACCTTTTTGTCCGTCAAATTGTAAGGGCCGGTTAATTTAGTCCTCAAATTCACGAAATGGCAATTTAGTCCCCTAACATCAGTTGAAACCAATGAAAAACTGATATATTGTCTTTAAAATTATGGTGCTTGATTCTGGATAATGATTAAATTGACCAATGTTCTCTAATTTAGTAGACTGAATTGTTATTTCTCCAATTTGAGGGACTAAATTGCCCAACAAGTCTCAAGTCAAAGGACGAAAAAATGCTTATTTACTCGATGTTGTTTCCATGATTTGTAATGAGAAAAATTTCATTTCAAGTTGTTCAGAAGTATCACATGTCTCTTTGTTATTCTTATACGTTGATCTTCATTCTTTTCTCCTATTACAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTACTATCACTATTTACTCCAAATCTCACTTTTTTGTGCACAAAGCCTTCTGCAGCTGCAAATTATTTGCTAACATTAACACAGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTGCTTCAATAATTTGCCATTTTCATTTTAACATTTGTAGTCATCAAACATTTAATAACAAGATAAGAAAGTTTATTTCCATCCCCTTTTCGTCTTTTGTAACATCTTGTCTTTGTATCGATAAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCACGTTTGGTGAGGATTAAAGTTGTATGATAGATTTTGTTTGCTATAGCATTTTGATGTTTGCAATCCAAAAGATAAAAAAATGTGCTTCTCAATACAGGTAGGTCCTAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCAGTAAGCTTCTTTCCATTCCATTCATAGAACACTCACCACTGTAATTTTAGTTTCTCCTTTAAGGTTATGTTTGGAATTGCGTCAACCTTCCATTTCTCGCGTTCGAATGTCTTTTAGACATTATGTTTCTGAAACTACAAATTGCAGCTTGAGACTTCACGTGCGTTCAACAGTTTCTCACTGCAAATACAAACAGACATCTAGTCAAAATCACTCTTCATTCATTATCATTGTATTGCATGGAATACAAACAGTGATACTAAAAACATTAGCAGAATGACACATGTTACTAACATCAAATAGTTAATGCAATGTTTTGATTTGGTGTAGCTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTGAGAAATAGCCCAACCGCAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGGTATATCATTATTAAACTTGTTTTAGTGGTTATTTATGATTAACATTTCATACTATATACTTTCTAAGCAAGAAAGATGCTTAATCCTTCCCTTAGAGCATATGTATGCATATTTTATGTTGTTTTTATGTCAATTATAGGAAATGGGTGGAAATTCAACATTGATATTTTATGGCACTGAAGAAGCAAATGAAGGAAAAACCGCATATATGGAGCGAAGACGCCCAGATTTTTCTAAGTTTAATAGAAGACCATAA

Protein sequence

>MS.gene009073.t1

MANNKDIETVIRRVTSVTNHLVSSPTSISPPPQLISLCHTSSYQRVHGDVPSHDVVWKVIPSDDDEGKVFTDIVYEKSVGEGIAKISINRPERRNAFRPHTIKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTPDGYSDHENIGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEANEGKTAYMERRRPDFSKFNRRP