Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43051.t1 | XP_024631624.1 | 97.7 | 311 | 5 | 1 | 1 | 311 | 1 | 309 | 4.00E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43051.t1 | Q9SGD1 | 57.2 | 339 | 91 | 12 | 10 | 301 | 5 | 336 | 4.5e-97 | 355.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43051.t1 | A0A396JBA6 | 97.7 | 311 | 5 | 1 | 1 | 311 | 1 | 309 | 2.9e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43051.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054467 | MS.gene43051 | 0.801818 | 7.53E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene43051 | 0.802773 | 4.78E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene43051 | 0.83043 | 2.95E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene43051 | 0.816297 | 5.95E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene43051 | 0.816852 | 4.47E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43051.t1 | MTR_1g093095 | 77.707 | 157 | 32 | 1 | 132 | 285 | 99 | 255 | 7.04e-94 | 280 |
| MS.gene43051.t1 | MTR_4g059870 | 38.129 | 139 | 77 | 4 | 142 | 279 | 61 | 191 | 3.20e-20 | 91.3 |
| MS.gene43051.t1 | MTR_2g093960 | 35.616 | 146 | 85 | 4 | 135 | 279 | 48 | 185 | 1.04e-19 | 89.4 |
| MS.gene43051.t1 | MTR_1g016010 | 36.170 | 141 | 81 | 4 | 140 | 279 | 62 | 194 | 5.18e-19 | 87.4 |
| MS.gene43051.t1 | MTR_2g090745 | 34.932 | 146 | 85 | 5 | 135 | 279 | 23 | 159 | 3.04e-18 | 85.1 |
| MS.gene43051.t1 | MTR_1g112270 | 34.694 | 147 | 84 | 5 | 135 | 279 | 60 | 196 | 3.08e-18 | 85.5 |
| MS.gene43051.t1 | MTR_1g112270 | 34.694 | 147 | 84 | 5 | 135 | 279 | 71 | 207 | 3.62e-18 | 85.1 |
| MS.gene43051.t1 | MTR_1g094115 | 34.694 | 147 | 84 | 5 | 135 | 279 | 63 | 199 | 4.74e-18 | 84.7 |
| MS.gene43051.t1 | MTR_8g017210 | 35.714 | 140 | 78 | 6 | 142 | 279 | 85 | 214 | 5.82e-18 | 84.3 |
| MS.gene43051.t1 | MTR_1g094115 | 36.496 | 137 | 75 | 5 | 145 | 279 | 56 | 182 | 7.35e-18 | 84.3 |
| MS.gene43051.t1 | MTR_2g099990 | 34.694 | 147 | 84 | 6 | 135 | 279 | 62 | 198 | 1.54e-17 | 83.2 |
| MS.gene43051.t1 | MTR_2g099990 | 36.296 | 135 | 74 | 6 | 147 | 279 | 5 | 129 | 1.11e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43051.t1 | AT1G08290 | 57.910 | 335 | 95 | 12 | 10 | 301 | 5 | 336 | 9.59e-119 | 345 |
| MS.gene43051.t1 | AT1G51220 | 52.412 | 311 | 109 | 6 | 19 | 307 | 43 | 336 | 1.52e-103 | 306 |
| MS.gene43051.t1 | AT3G20880 | 63.158 | 228 | 68 | 2 | 84 | 295 | 176 | 403 | 5.64e-102 | 305 |
| MS.gene43051.t1 | AT3G57670 | 66.995 | 203 | 55 | 3 | 95 | 297 | 175 | 365 | 5.72e-100 | 299 |
| MS.gene43051.t1 | AT1G34790 | 59.729 | 221 | 85 | 2 | 84 | 304 | 83 | 299 | 1.02e-93 | 280 |
| MS.gene43051.t1 | AT1G13290 | 64.532 | 203 | 53 | 4 | 84 | 284 | 54 | 239 | 1.81e-92 | 277 |
| MS.gene43051.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 142 | 290 | 28 | 182 | 2.29e-28 | 111 |
| MS.gene43051.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 142 | 290 | 238 | 392 | 8.36e-28 | 112 |
| MS.gene43051.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 142 | 290 | 238 | 392 | 8.36e-28 | 112 |
| MS.gene43051.t1 | AT5G22890 | 39.073 | 151 | 84 | 4 | 142 | 285 | 211 | 360 | 1.41e-24 | 102 |
| MS.gene43051.t1 | AT5G03150 | 36.691 | 139 | 79 | 4 | 142 | 279 | 76 | 206 | 2.93e-20 | 91.3 |
| MS.gene43051.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 140 | 279 | 84 | 216 | 8.73e-19 | 86.7 |
| MS.gene43051.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 140 | 279 | 84 | 216 | 8.73e-19 | 86.7 |
| MS.gene43051.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 140 | 279 | 84 | 216 | 8.73e-19 | 86.7 |
| MS.gene43051.t1 | AT5G66730 | 35.915 | 142 | 79 | 5 | 140 | 279 | 53 | 184 | 1.28e-18 | 86.7 |
| MS.gene43051.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 142 | 279 | 58 | 188 | 1.39e-18 | 86.3 |
| MS.gene43051.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 142 | 279 | 63 | 193 | 1.60e-18 | 85.9 |
| MS.gene43051.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 142 | 279 | 67 | 197 | 1.61e-18 | 85.9 |
| MS.gene43051.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 140 | 279 | 75 | 206 | 1.61e-18 | 86.3 |
| MS.gene43051.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 140 | 279 | 75 | 206 | 1.61e-18 | 86.3 |
| MS.gene43051.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 140 | 279 | 75 | 206 | 1.61e-18 | 86.3 |
| MS.gene43051.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 140 | 279 | 75 | 206 | 1.61e-18 | 86.3 |
| MS.gene43051.t1 | AT4G02670 | 35.616 | 146 | 85 | 4 | 135 | 279 | 71 | 208 | 1.94e-18 | 85.5 |
| MS.gene43051.t1 | AT4G02670 | 35.616 | 146 | 85 | 4 | 135 | 279 | 69 | 206 | 2.11e-18 | 85.5 |
| MS.gene43051.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 142 | 279 | 62 | 192 | 2.60e-18 | 85.5 |
| MS.gene43051.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 142 | 279 | 62 | 192 | 2.60e-18 | 85.5 |
| MS.gene43051.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 135 | 279 | 68 | 204 | 3.56e-18 | 85.5 |
| MS.gene43051.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 135 | 279 | 68 | 204 | 3.56e-18 | 85.5 |
| MS.gene43051.t1 | AT2G02080 | 36.567 | 134 | 75 | 4 | 147 | 279 | 5 | 129 | 5.43e-18 | 84.3 |
| MS.gene43051.t1 | AT2G02080 | 36.567 | 134 | 75 | 4 | 147 | 279 | 5 | 129 | 5.43e-18 | 84.3 |
| MS.gene43051.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 135 | 279 | 69 | 205 | 5.51e-18 | 84.3 |
| MS.gene43051.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 135 | 279 | 69 | 205 | 5.51e-18 | 84.3 |
| MS.gene43051.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 135 | 279 | 83 | 219 | 6.12e-18 | 84.3 |
| MS.gene43051.t1 | AT1G03840 | 34.932 | 146 | 85 | 5 | 135 | 279 | 55 | 191 | 1.28e-17 | 83.6 |
| MS.gene43051.t1 | AT1G03840 | 34.932 | 146 | 85 | 5 | 135 | 279 | 57 | 193 | 1.41e-17 | 83.6 |
| MS.gene43051.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 142 | 279 | 60 | 189 | 1.56e-17 | 83.2 |
| MS.gene43051.t1 | AT5G44160 | 32.877 | 146 | 88 | 4 | 135 | 279 | 14 | 150 | 1.73e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 86 | 223 | 2.06e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 86 | 223 | 2.06e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 81 | 218 | 2.17e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 67 | 204 | 2.26e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 87 | 224 | 2.48e-17 | 82.8 |
| MS.gene43051.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 135 | 279 | 73 | 210 | 2.70e-17 | 82.4 |
| MS.gene43051.t1 | AT3G50700 | 34.247 | 146 | 86 | 4 | 135 | 279 | 50 | 186 | 2.80e-17 | 82.4 |
| MS.gene43051.t1 | AT1G68130 | 31.655 | 139 | 84 | 5 | 140 | 275 | 62 | 192 | 1.40e-12 | 68.2 |
| MS.gene43051.t1 | AT1G25250 | 29.710 | 138 | 89 | 4 | 140 | 275 | 31 | 162 | 1.86e-12 | 67.8 |
| MS.gene43051.t1 | AT1G25250 | 29.710 | 138 | 89 | 4 | 140 | 275 | 54 | 185 | 2.49e-12 | 67.4 |
| MS.gene43051.t1 | AT2G01940 | 30.216 | 139 | 86 | 5 | 140 | 275 | 65 | 195 | 4.94e-11 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGCATTTGCTGTTAA+AGG | 0.122625 | 2.4:+13928001 | MS.gene43051:CDS |
| TTGAGCCATTCAATGAAATT+TGG | 0.134972 | 2.4:-13925136 | None:intergenic |
| CATCCCATGGTTGTCCTCAT+AGG | 0.237924 | 2.4:-13925266 | None:intergenic |
| TCCCCACTTCCTTCTCTTGA+AGG | 0.285807 | 2.4:+13928139 | MS.gene43051:CDS |
| AGTTTGTGTTGATGAGTTAA+AGG | 0.287140 | 2.4:-13925196 | None:intergenic |
| TGAGCCATTCAATGAAATTT+GGG | 0.289191 | 2.4:-13925135 | None:intergenic |
| GATGATGAGAGTGAGGAATT+AGG | 0.300962 | 2.4:-13925163 | None:intergenic |
| AAAGGACCAGACTCACTTAA+AGG | 0.304674 | 2.4:+13927815 | MS.gene43051:CDS |
| GAGAAAGAATGCAGCAATAC+TGG | 0.341279 | 2.4:+13928172 | MS.gene43051:CDS |
| AAACCCCAAATTTCATTGAA+TGG | 0.361241 | 2.4:+13925131 | MS.gene43051:CDS |
| ATTGAAAGTCTTACTGCATA+TGG | 0.368036 | 2.4:-13925533 | None:intergenic |
| TGAACATGATGAGAAGAATA+AGG | 0.376871 | 2.4:+13925384 | MS.gene43051:CDS |
| CATTTGCTGTTAAAGGTGAT+TGG | 0.376909 | 2.4:+13928008 | MS.gene43051:CDS |
| ACTCCTGCTCAAATTCTTGT+TGG | 0.396733 | 2.4:+13925490 | MS.gene43051:CDS |
| TTAAGGAAGAGAGAAGGTTT+TGG | 0.404432 | 2.4:+13925461 | MS.gene43051:CDS |
| TGTGTTCCTTTAAGTGAGTC+TGG | 0.407901 | 2.4:-13927821 | None:intergenic |
| AAAGATCATGTTAGATCCTT+CGG | 0.408333 | 2.4:+13928106 | MS.gene43051:CDS |
| GATTCATGACCTCCTATGTT+AGG | 0.421115 | 2.4:-13925358 | None:intergenic |
| TTGGTATTGCACTTGTGGTT+CGG | 0.434745 | 2.4:+13928060 | MS.gene43051:CDS |
| CAATGAAATTTGGGGTTTGA+AGG | 0.444233 | 2.4:-13925126 | None:intergenic |
| ATCCCATGGTTGTCCTCATA+GGG | 0.446171 | 2.4:-13925265 | None:intergenic |
| CTAGAATTAAGATGGGTTTG+AGG | 0.448542 | 2.4:+13925071 | None:intergenic |
| TAGAATTAAGATGGGTTTGA+GGG | 0.453608 | 2.4:+13925072 | None:intergenic |
| TCCAAGAGCAAAACCATTGA+AGG | 0.462319 | 2.4:+13927910 | MS.gene43051:CDS |
| AGAGTTCTGAAGTCCTTCAA+TGG | 0.479319 | 2.4:-13927923 | None:intergenic |
| CATGTTAGATCCTTCGGAAA+AGG | 0.486223 | 2.4:+13928112 | MS.gene43051:CDS |
| CCATGTTATTGTTGTGCTCA+CGG | 0.500524 | 2.4:+13927866 | MS.gene43051:CDS |
| GGGCTTAATTCCACTAGAGA+TGG | 0.505824 | 2.4:-13925245 | None:intergenic |
| TGAAGTAAAAGAAGAGAAGG+TGG | 0.512589 | 2.4:+13925303 | MS.gene43051:CDS |
| TCTTCAAAGCCTTCAAGAGA+AGG | 0.517348 | 2.4:-13928148 | None:intergenic |
| TGATGAGTTAAAGGCGATGA+AGG | 0.525454 | 2.4:-13925187 | None:intergenic |
| TGAAGGAGATGATGAGAGTG+AGG | 0.539316 | 2.4:-13925170 | None:intergenic |
| ACAAGAATTTGAGCAGGAGT+TGG | 0.541700 | 2.4:-13925487 | None:intergenic |
| CACATTGGATTGCCTAACAT+AGG | 0.547171 | 2.4:+13925346 | MS.gene43051:CDS |
| CACAACCAGCAGCAATGCTA+AGG | 0.552239 | 2.4:+13927840 | MS.gene43051:CDS |
| GATGAGAGTGAGGAATTAGG+TGG | 0.553504 | 2.4:-13925160 | None:intergenic |
| ACTCATTACAAAAGAAAGCA+TGG | 0.557148 | 2.4:+13927950 | MS.gene43051:CDS |
| TAGTGGAATTAAGCCCTATG+AGG | 0.559838 | 2.4:+13925252 | MS.gene43051:CDS |
| CAATAGATACAACAATATGC+AGG | 0.564922 | 2.4:+13925552 | MS.gene43051:CDS |
| AGCCTTCAAGAGAAGGAAGT+GGG | 0.568332 | 2.4:-13928141 | None:intergenic |
| GGTAGCCTTAGCATTGCTGC+TGG | 0.575071 | 2.4:-13927845 | None:intergenic |
| GGCTTAATTCCACTAGAGAT+GGG | 0.587730 | 2.4:-13925244 | None:intergenic |
| GGTCCAACAAGAATTTGAGC+AGG | 0.591899 | 2.4:-13925493 | None:intergenic |
| GTGACTGTGACTTTGCACAT+TGG | 0.592096 | 2.4:+13925331 | MS.gene43051:CDS |
| AAGCCTTCAAGAGAAGGAAG+TGG | 0.595192 | 2.4:-13928142 | None:intergenic |
| AAGCCCTATGAGGACAACCA+TGG | 0.608837 | 2.4:+13925262 | MS.gene43051:CDS |
| ATGGAGCAAGCAAACTGCAT+AGG | 0.613273 | 2.4:-13925514 | None:intergenic |
| GAGCCATTCAATGAAATTTG+GGG | 0.617863 | 2.4:-13925134 | None:intergenic |
| ATTGGATTGCCTAACATAGG+AGG | 0.621227 | 2.4:+13925349 | MS.gene43051:CDS |
| AGCCCTATGAGGACAACCAT+GGG | 0.622008 | 2.4:+13925263 | MS.gene43051:CDS |
| CCGTGAGCACAACAATAACA+TGG | 0.635068 | 2.4:-13927866 | None:intergenic |
| CATGGATCAGAATTTAGGAA+AGG | 0.639859 | 2.4:+13927797 | MS.gene43051:CDS |
| GCCTTCAAGAGAAGGAAGTG+GGG | 0.663895 | 2.4:-13928140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATTTAATATGACTA+AGG | + | chr2.4:13926598-13926617 | MS.gene43051:intron | 10.0% |
| !! | TTAGTCATATTAAATTATAT+TGG | - | chr2.4:13926599-13926618 | None:intergenic | 10.0% |
| !!! | ATTTTATCTCTATATTATTT+GGG | + | chr2.4:13927616-13927635 | MS.gene43051:intron | 10.0% |
| !!! | TATTTTATCTCTATATTATT+TGG | + | chr2.4:13927615-13927634 | MS.gene43051:intron | 10.0% |
| !! | AATGTATAATACAACTATTA+GGG | + | chr2.4:13926887-13926906 | MS.gene43051:intron | 15.0% |
| !! | ACTATTAAAGTGATAAAATA+TGG | - | chr2.4:13926094-13926113 | None:intergenic | 15.0% |
| !! | TTAATTAACCCTTAAATAAA+TGG | - | chr2.4:13927240-13927259 | None:intergenic | 15.0% |
| !!! | ATAAATTTGAAATAAAGTGA+CGG | - | chr2.4:13926307-13926326 | None:intergenic | 15.0% |
| !! | AAAACCTAAGTACAAATTAA+GGG | - | chr2.4:13926920-13926939 | None:intergenic | 20.0% |
| !! | AATGTTTGATCTAATTCATA+AGG | - | chr2.4:13927062-13927081 | None:intergenic | 20.0% |
| !! | AATTCATATTTAGTAGTCTT+AGG | + | chr2.4:13925771-13925790 | MS.gene43051:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTAC+AGG | - | chr2.4:13927273-13927292 | None:intergenic | 20.0% |
| !! | CAAAATTCTGAATATTTACA+GGG | - | chr2.4:13927272-13927291 | None:intergenic | 20.0% |
| !! | CAATGTATAATACAACTATT+AGG | + | chr2.4:13926886-13926905 | MS.gene43051:intron | 20.0% |
| !! | TAAAACCTAAGTACAAATTA+AGG | - | chr2.4:13926921-13926940 | None:intergenic | 20.0% |
| !! | TAAGTATAATTATGTGACTT+TGG | - | chr2.4:13926495-13926514 | None:intergenic | 20.0% |
| !! | TAAGTCAAGATTATAAAGAT+AGG | + | chr2.4:13925934-13925953 | MS.gene43051:intron | 20.0% |
| !! | TAATAGTTCAATTAATTGCA+TGG | + | chr2.4:13926107-13926126 | MS.gene43051:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | + | chr2.4:13927245-13927264 | MS.gene43051:intron | 20.0% |
| !!! | AAAAATTTCATCAACACTTT+TGG | + | chr2.4:13927397-13927416 | MS.gene43051:intron | 20.0% |
| !!! | AAGGTGTGATTTTATTTTAT+AGG | - | chr2.4:13927304-13927323 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+TGG | + | chr2.4:13927458-13927477 | MS.gene43051:intron | 20.0% |
| !!! | AGGTGTGATTTTATTTTATA+GGG | - | chr2.4:13927303-13927322 | None:intergenic | 20.0% |
| !!! | ATAATAGTGCCATTTATTTA+AGG | + | chr2.4:13927228-13927247 | MS.gene43051:intron | 20.0% |
| !!! | ATTTTTTTCCTAAAAATCGA+AGG | - | chr2.4:13925689-13925708 | None:intergenic | 20.0% |
| !!! | GAAAATTTTATAGGTCTAAA+AGG | - | chr2.4:13927323-13927342 | None:intergenic | 20.0% |
| !!! | GTTTTATCAAGAATTATTCA+AGG | + | chr2.4:13925745-13925764 | MS.gene43051:intron | 20.0% |
| !!! | TAATAGTGCCATTTATTTAA+GGG | + | chr2.4:13927229-13927248 | MS.gene43051:intron | 20.0% |
| !!! | TCACATTTTTTAAAGTGTAA+AGG | - | chr2.4:13926731-13926750 | None:intergenic | 20.0% |
| !!! | TCTTAACCCTTATATTTTTA+GGG | + | chr2.4:13925617-13925636 | MS.gene43051:intron | 20.0% |
| !!! | TTCTTAACCCTTATATTTTT+AGG | + | chr2.4:13925616-13925635 | MS.gene43051:intron | 20.0% |
| !!! | TTTGGTTTTTCTTATGTAAT+TGG | - | chr2.4:13927172-13927191 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTAAAAATCGAA+GGG | - | chr2.4:13925688-13925707 | None:intergenic | 20.0% |
| ! | AAAAATGTGAGCAAAATGAA+TGG | + | chr2.4:13926741-13926760 | MS.gene43051:intron | 25.0% |
| ! | AAATAGCATAGTCTATAGTT+GGG | - | chr2.4:13926176-13926195 | None:intergenic | 25.0% |
| ! | AGGTGTTTAACATTATGATT+AGG | + | chr2.4:13926618-13926637 | MS.gene43051:intron | 25.0% |
| ! | CAAAAGAAAAGAAAACCTAA+GGG | - | chr2.4:13925807-13925826 | None:intergenic | 25.0% |
| ! | CAAGACTGTGAATATTTATA+GGG | + | chr2.4:13927489-13927508 | MS.gene43051:intron | 25.0% |
| ! | CTATTATATCATCATCATCA+TGG | - | chr2.4:13927215-13927234 | None:intergenic | 25.0% |
| ! | GAAAGCAAAAATAAATGAGA+GGG | - | chr2.4:13926709-13926728 | None:intergenic | 25.0% |
| ! | GATAAAAAAGATATCGTTCA+AGG | + | chr2.4:13926957-13926976 | MS.gene43051:intron | 25.0% |
| ! | TAAAAACTGGAAAGTTTCTT+GGG | - | chr2.4:13925224-13925243 | None:intergenic | 25.0% |
| ! | TAAATAGCATAGTCTATAGT+TGG | - | chr2.4:13926177-13926196 | None:intergenic | 25.0% |
| ! | TAAGAAGTTATGTGTATGAA+TGG | - | chr2.4:13926070-13926089 | None:intergenic | 25.0% |
| ! | TCAAAAGAAAAGAAAACCTA+AGG | - | chr2.4:13925808-13925827 | None:intergenic | 25.0% |
| ! | TCAAGACTGTGAATATTTAT+AGG | + | chr2.4:13927488-13927507 | MS.gene43051:intron | 25.0% |
| ! | TGTTTAACATTATGATTAGG+AGG | + | chr2.4:13926621-13926640 | MS.gene43051:intron | 25.0% |
| !! | AAAAAAACTGTGGAAAGTTT+TGG | + | chr2.4:13928041-13928060 | MS.gene43051:CDS | 25.0% |
| !! | AAGATATGGTCTTTTACTAT+AGG | - | chr2.4:13926828-13926847 | None:intergenic | 25.0% |
| !! | AATGATTGTTTTCTTCTTGA+TGG | - | chr2.4:13926657-13926676 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | - | chr2.4:13927425-13927444 | None:intergenic | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | chr2.4:13927332-13927351 | None:intergenic | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | - | chr2.4:13927424-13927443 | None:intergenic | 25.0% |
| !! | CTTTTCCCCTAAAAATATAA+GGG | - | chr2.4:13925626-13925645 | None:intergenic | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | - | chr2.4:13927362-13927381 | None:intergenic | 25.0% |
| !! | TCTTTTCCCCTAAAAATATA+AGG | - | chr2.4:13925627-13925646 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | - | chr2.4:13927363-13927382 | None:intergenic | 25.0% |
| !!! | CTTAACCCTTATATTTTTAG+GGG | + | chr2.4:13925618-13925637 | MS.gene43051:intron | 25.0% |
| !!! | TAAGGTTTTTGATTGTGTTA+AGG | + | chr2.4:13925402-13925421 | MS.gene43051:CDS | 25.0% |
| !!! | TTTTGAAGTAAAAGAAGAGA+AGG | + | chr2.4:13925300-13925319 | MS.gene43051:CDS | 25.0% |
| !!! | TTTTTTTGACAAAACAGCAT+AGG | - | chr2.4:13926369-13926388 | None:intergenic | 25.0% |
| AAACCCCAAATTTCATTGAA+TGG | + | chr2.4:13925131-13925150 | MS.gene43051:CDS | 30.0% | |
| AAAGATCATGTTAGATCCTT+CGG | + | chr2.4:13928106-13928125 | MS.gene43051:CDS | 30.0% | |
| ACAATATGCAGGTTAGTAAT+TGG | + | chr2.4:13925563-13925582 | MS.gene43051:intron | 30.0% | |
| ACTCATTACAAAAGAAAGCA+TGG | + | chr2.4:13927950-13927969 | MS.gene43051:CDS | 30.0% | |
| AGAACTCATGAAAAAAACTG+TGG | + | chr2.4:13928031-13928050 | MS.gene43051:CDS | 30.0% | |
| AGTAACGAAGGATATATAGA+GGG | - | chr2.4:13926452-13926471 | None:intergenic | 30.0% | |
| ATATCGGAAAGGAAATACAA+AGG | - | chr2.4:13926855-13926874 | None:intergenic | 30.0% | |
| ATTGAAAGTCTTACTGCATA+TGG | - | chr2.4:13925536-13925555 | None:intergenic | 30.0% | |
| ATTTCCTTTCCGATATCAAA+GGG | + | chr2.4:13926859-13926878 | MS.gene43051:intron | 30.0% | |
| CAATAGATACAACAATATGC+AGG | + | chr2.4:13925552-13925571 | MS.gene43051:CDS | 30.0% | |
| GAAAGCAAATTTCTCTTAGA+GGG | + | chr2.4:13925826-13925845 | MS.gene43051:intron | 30.0% | |
| GGAAAGCAAAAATAAATGAG+AGG | - | chr2.4:13926710-13926729 | None:intergenic | 30.0% | |
| GTAAAAACTGGAAAGTTTCT+TGG | - | chr2.4:13925225-13925244 | None:intergenic | 30.0% | |
| TAGTAACGAAGGATATATAG+AGG | - | chr2.4:13926453-13926472 | None:intergenic | 30.0% | |
| TATCATCATCATCATGGATA+TGG | - | chr2.4:13927209-13927228 | None:intergenic | 30.0% | |
| TATTTCCTTTCCGATATCAA+AGG | + | chr2.4:13926858-13926877 | MS.gene43051:intron | 30.0% | |
| TGAAAGCAAATTTCTCTTAG+AGG | + | chr2.4:13925825-13925844 | MS.gene43051:intron | 30.0% | |
| TGAACATGATGAGAAGAATA+AGG | + | chr2.4:13925384-13925403 | MS.gene43051:CDS | 30.0% | |
| TGAGCCATTCAATGAAATTT+GGG | - | chr2.4:13925138-13925157 | None:intergenic | 30.0% | |
| TTAGGTCAATAATTTCCCTT+AGG | + | chr2.4:13925789-13925808 | MS.gene43051:intron | 30.0% | |
| TTCTAATCAGATAAGAGAGA+CGG | + | chr2.4:13925968-13925987 | MS.gene43051:intron | 30.0% | |
| TTGAGCCATTCAATGAAATT+TGG | - | chr2.4:13925139-13925158 | None:intergenic | 30.0% | |
| ! | AAGAGCCTTTTACTAAAAGT+TGG | - | chr2.4:13926795-13926814 | None:intergenic | 30.0% |
| ! | AATACAAAGGCATGAAGATA+TGG | - | chr2.4:13926842-13926861 | None:intergenic | 30.0% |
| ! | AGAGCCTTTTACTAAAAGTT+GGG | - | chr2.4:13926794-13926813 | None:intergenic | 30.0% |
| ! | AGTTTGTGTTGATGAGTTAA+AGG | - | chr2.4:13925199-13925218 | None:intergenic | 30.0% |
| ! | CTCTATATTATTTGGGACTT+AGG | + | chr2.4:13927623-13927642 | MS.gene43051:intron | 30.0% |
| ! | GAACATTTTCTGCAGATAAA+TGG | - | chr2.4:13927983-13928002 | None:intergenic | 30.0% |
| ! | GTATCCCAACTTTTAGTAAA+AGG | + | chr2.4:13926787-13926806 | MS.gene43051:intron | 30.0% |
| ! | TTCTTAACCCTTCGATTTTT+AGG | + | chr2.4:13925678-13925697 | MS.gene43051:intron | 30.0% |
| !! | AAAACCACTTAGTTTTTGGA+AGG | - | chr2.4:13927570-13927589 | None:intergenic | 30.0% |
| !! | AAACCACTTAGTTTTTGGAA+GGG | - | chr2.4:13927569-13927588 | None:intergenic | 30.0% |
| !! | ATCACCCTTAATTTGTACTT+AGG | + | chr2.4:13926913-13926932 | MS.gene43051:intron | 30.0% |
| !! | GAGTAAAACCACTTAGTTTT+TGG | - | chr2.4:13927574-13927593 | None:intergenic | 30.0% |
| !! | TCTAAAGCATTTGCTGTTAA+AGG | + | chr2.4:13928001-13928020 | MS.gene43051:CDS | 30.0% |
| !!! | GTTTTTTTCGGAATGTACAA+CGG | + | chr2.4:13927645-13927664 | MS.gene43051:intron | 30.0% |
| !!! | TTTGGGACTTAGGTTTTTTT+CGG | + | chr2.4:13927633-13927652 | MS.gene43051:intron | 30.0% |
| !!! | TTTGTTTTAAGGAAGAGAGA+AGG | + | chr2.4:13925455-13925474 | MS.gene43051:CDS | 30.0% |
| ATAGGGACTAAAAATGCTGA+TGG | - | chr2.4:13927345-13927364 | None:intergenic | 35.0% | |
| ATTTGTCGTCATAGTAACGA+AGG | - | chr2.4:13926464-13926483 | None:intergenic | 35.0% | |
| CATGGATCAGAATTTAGGAA+AGG | + | chr2.4:13927797-13927816 | MS.gene43051:CDS | 35.0% | |
| GAATTGAAGAAAAACGTGCA+TGG | + | chr2.4:13925430-13925449 | MS.gene43051:CDS | 35.0% | |
| GAGCCATTCAATGAAATTTG+GGG | - | chr2.4:13925137-13925156 | None:intergenic | 35.0% | |
| TCATGTTAAACTAGCATAGG+AGG | - | chr2.4:13926403-13926422 | None:intergenic | 35.0% | |
| TGAAGTAAAAGAAGAGAAGG+TGG | + | chr2.4:13925303-13925322 | MS.gene43051:CDS | 35.0% | |
| TGACAGACTATAAATGCTGA+TGG | - | chr2.4:13927377-13927396 | None:intergenic | 35.0% | |
| TTGCGTATGAAGTATGAACT+AGG | - | chr2.4:13926036-13926055 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr2.4:13927415-13927434 | MS.gene43051:intron | 35.0% | |
| ! | AATCTTCATTTTGCATCCCA+TGG | - | chr2.4:13925282-13925301 | None:intergenic | 35.0% |
| ! | AGAGTTGATCATCATGAGAT+TGG | + | chr2.4:13927110-13927129 | MS.gene43051:intron | 35.0% |
| ! | ATGGATCTTGATTAGCTCTT+TGG | - | chr2.4:13927190-13927209 | None:intergenic | 35.0% |
| ! | ATTTTGCAGATGCATATGTG+GGG | + | chr2.4:13927773-13927792 | MS.gene43051:intron | 35.0% |
| ! | CAATGAAATTTGGGGTTTGA+AGG | - | chr2.4:13925129-13925148 | None:intergenic | 35.0% |
| ! | CATTTTGCAGATGCATATGT+GGG | + | chr2.4:13927772-13927791 | MS.gene43051:intron | 35.0% |
| ! | GAGTTGATCATCATGAGATT+GGG | + | chr2.4:13927111-13927130 | MS.gene43051:intron | 35.0% |
| ! | TTAAGGAAGAGAGAAGGTTT+TGG | + | chr2.4:13925461-13925480 | MS.gene43051:CDS | 35.0% |
| ! | TTTTGACAAAACAGCATAGG+AGG | - | chr2.4:13926366-13926385 | None:intergenic | 35.0% |
| !! | AAGTTTTGGTATTGCACTTG+TGG | + | chr2.4:13928055-13928074 | MS.gene43051:CDS | 35.0% |
| !! | CATTTGCTGTTAAAGGTGAT+TGG | + | chr2.4:13928008-13928027 | MS.gene43051:CDS | 35.0% |
| !!! | CGTGCATGGTTTTTGTTTTA+AGG | + | chr2.4:13925444-13925463 | MS.gene43051:CDS | 35.0% |
| AAAGGACCAGACTCACTTAA+AGG | + | chr2.4:13927815-13927834 | MS.gene43051:CDS | 40.0% | |
| ACAAGAATTTGAGCAGGAGT+TGG | - | chr2.4:13925490-13925509 | None:intergenic | 40.0% | |
| ACTCCTGCTCAAATTCTTGT+TGG | + | chr2.4:13925490-13925509 | MS.gene43051:CDS | 40.0% | |
| ATTAGCTGTGATCGAATACG+TGG | - | chr2.4:13927671-13927690 | None:intergenic | 40.0% | |
| ATTGGATTGCCTAACATAGG+AGG | + | chr2.4:13925349-13925368 | MS.gene43051:CDS | 40.0% | |
| CACATTGGATTGCCTAACAT+AGG | + | chr2.4:13925346-13925365 | MS.gene43051:CDS | 40.0% | |
| CACTAGAGATGGGTAAAAAC+TGG | - | chr2.4:13925237-13925256 | None:intergenic | 40.0% | |
| CATGTTAGATCCTTCGGAAA+AGG | + | chr2.4:13928112-13928131 | MS.gene43051:CDS | 40.0% | |
| CATTGCACACCCTTTGATAT+CGG | - | chr2.4:13926871-13926890 | None:intergenic | 40.0% | |
| CCACATATGCATCTGCAAAA+TGG | - | chr2.4:13927774-13927793 | None:intergenic | 40.0% | |
| CCATGTTATTGTTGTGCTCA+CGG | + | chr2.4:13927866-13927885 | MS.gene43051:CDS | 40.0% | |
| CTTAATTGTGCGTCTTGTGT+CGG | + | chr2.4:13926329-13926348 | MS.gene43051:intron | 40.0% | |
| GAGAAAGAATGCAGCAATAC+TGG | + | chr2.4:13928172-13928191 | MS.gene43051:CDS | 40.0% | |
| GATGATGAGAGTGAGGAATT+AGG | - | chr2.4:13925166-13925185 | None:intergenic | 40.0% | |
| GATTCATGACCTCCTATGTT+AGG | - | chr2.4:13925361-13925380 | None:intergenic | 40.0% | |
| GGCTTAATTCCACTAGAGAT+GGG | - | chr2.4:13925247-13925266 | None:intergenic | 40.0% | |
| GGGTCATGTTAAACTAGCAT+AGG | - | chr2.4:13926406-13926425 | None:intergenic | 40.0% | |
| TAAAAGTTGGGATACCCTAG+CGG | - | chr2.4:13926782-13926801 | None:intergenic | 40.0% | |
| TAGTGGAATTAAGCCCTATG+AGG | + | chr2.4:13925252-13925271 | MS.gene43051:CDS | 40.0% | |
| TCACCCTTCCAAAAACTAAG+TGG | + | chr2.4:13927563-13927582 | MS.gene43051:intron | 40.0% | |
| TCCAAGAGCAAAACCATTGA+AGG | + | chr2.4:13927910-13927929 | MS.gene43051:CDS | 40.0% | |
| TCTTCAAAGCCTTCAAGAGA+AGG | - | chr2.4:13928151-13928170 | None:intergenic | 40.0% | |
| TGATGAGTTAAAGGCGATGA+AGG | - | chr2.4:13925190-13925209 | None:intergenic | 40.0% | |
| TGTGTTCCTTTAAGTGAGTC+TGG | - | chr2.4:13927824-13927843 | None:intergenic | 40.0% | |
| TTGGTATTGCACTTGTGGTT+CGG | + | chr2.4:13928060-13928079 | MS.gene43051:CDS | 40.0% | |
| ! | CAGTTTTTACCCATCTCTAG+TGG | + | chr2.4:13925235-13925254 | MS.gene43051:CDS | 40.0% |
| ! | CCATTTTGCAGATGCATATG+TGG | + | chr2.4:13927771-13927790 | MS.gene43051:intron | 40.0% |
| ! | TTTTGCAGATGCATATGTGG+GGG | + | chr2.4:13927774-13927793 | MS.gene43051:intron | 40.0% |
| !! | AGAGTTCTGAAGTCCTTCAA+TGG | - | chr2.4:13927926-13927945 | None:intergenic | 40.0% |
| !! | TCCTTCAATGGTTTTGCTCT+TGG | - | chr2.4:13927914-13927933 | None:intergenic | 40.0% |
| AAAAGTTGGGATACCCTAGC+GGG | - | chr2.4:13926781-13926800 | None:intergenic | 45.0% | |
| AAGCCTTCAAGAGAAGGAAG+TGG | - | chr2.4:13928145-13928164 | None:intergenic | 45.0% | |
| AGCCTTCAAGAGAAGGAAGT+GGG | - | chr2.4:13928144-13928163 | None:intergenic | 45.0% | |
| ATCCCATGGTTGTCCTCATA+GGG | - | chr2.4:13925268-13925287 | None:intergenic | 45.0% | |
| ATGGAGCAAGCAAACTGCAT+AGG | - | chr2.4:13925517-13925536 | None:intergenic | 45.0% | |
| CACACCCTTTGATATCGGAA+AGG | - | chr2.4:13926866-13926885 | None:intergenic | 45.0% | |
| CCGTGAGCACAACAATAACA+TGG | - | chr2.4:13927869-13927888 | None:intergenic | 45.0% | |
| GATGAGAGTGAGGAATTAGG+TGG | - | chr2.4:13925163-13925182 | None:intergenic | 45.0% | |
| GGGCTTAATTCCACTAGAGA+TGG | - | chr2.4:13925248-13925267 | None:intergenic | 45.0% | |
| GGTCCAACAAGAATTTGAGC+AGG | - | chr2.4:13925496-13925515 | None:intergenic | 45.0% | |
| GTGACTGTGACTTTGCACAT+TGG | + | chr2.4:13925331-13925350 | MS.gene43051:CDS | 45.0% | |
| TGAAGGAGATGATGAGAGTG+AGG | - | chr2.4:13925173-13925192 | None:intergenic | 45.0% | |
| !! | ATGTAAAAATTATTAAATAA+AGG | - | chr2.4:13927533-13927552 | None:intergenic | 5.0% |
| !! | TGTAAAAATTATTAAATAAA+GGG | - | chr2.4:13927532-13927551 | None:intergenic | 5.0% |
| !!! | AAATTATTTTATTTTTTTGA+AGG | + | chr2.4:13926203-13926222 | MS.gene43051:intron | 5.0% |
| !!! | AATAATTAAATTTTATACAT+GGG | - | chr2.4:13926426-13926445 | None:intergenic | 5.0% |
| !!! | TAATAATTAAATTTTATACA+TGG | - | chr2.4:13926427-13926446 | None:intergenic | 5.0% |
| AAGCCCTATGAGGACAACCA+TGG | + | chr2.4:13925262-13925281 | MS.gene43051:CDS | 50.0% | |
| AGCCCTATGAGGACAACCAT+GGG | + | chr2.4:13925263-13925282 | MS.gene43051:CDS | 50.0% | |
| CACAACCAGCAGCAATGCTA+AGG | + | chr2.4:13927840-13927859 | MS.gene43051:CDS | 50.0% | |
| CATCCCATGGTTGTCCTCAT+AGG | - | chr2.4:13925269-13925288 | None:intergenic | 50.0% | |
| GCCTTCAAGAGAAGGAAGTG+GGG | - | chr2.4:13928143-13928162 | None:intergenic | 50.0% | |
| TCCCCACTTCCTTCTCTTGA+AGG | + | chr2.4:13928139-13928158 | MS.gene43051:CDS | 50.0% | |
| ! | GGGGGCATGGATCAGAATTT+AGG | + | chr2.4:13927792-13927811 | MS.gene43051:CDS | 50.0% |
| ! | TGGGGAATGACCTTTTCCGA+AGG | - | chr2.4:13928125-13928144 | None:intergenic | 50.0% |
| CAGATGCATATGTGGGGGCA+TGG | + | chr2.4:13927779-13927798 | MS.gene43051:intron | 55.0% | |
| ! | GGTAGCCTTAGCATTGCTGC+TGG | - | chr2.4:13927848-13927867 | None:intergenic | 55.0% |
| TTGGGATACCCTAGCGGGAG+CGG | - | chr2.4:13926776-13926795 | None:intergenic | 60.0% | |
| TTGTTGTCCCGCTCCCGCTA+GGG | + | chr2.4:13926765-13926784 | MS.gene43051:intron | 60.0% | |
| TGGGATACCCTAGCGGGAGC+GGG | - | chr2.4:13926775-13926794 | None:intergenic | 65.0% | |
| ! | CTTGTTGTCCCGCTCCCGCT+AGG | + | chr2.4:13926764-13926783 | MS.gene43051:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 13925082 | 13928225 | 13925082 | ID=MS.gene43051 |
| chr2.4 | mRNA | 13925082 | 13928225 | 13925082 | ID=MS.gene43051.t1;Parent=MS.gene43051 |
| chr2.4 | exon | 13925082 | 13925573 | 13925082 | ID=MS.gene43051.t1.exon1;Parent=MS.gene43051.t1 |
| chr2.4 | CDS | 13925082 | 13925573 | 13925082 | ID=cds.MS.gene43051.t1;Parent=MS.gene43051.t1 |
| chr2.4 | exon | 13927782 | 13928225 | 13927782 | ID=MS.gene43051.t1.exon2;Parent=MS.gene43051.t1 |
| chr2.4 | CDS | 13927782 | 13928225 | 13927782 | ID=cds.MS.gene43051.t1;Parent=MS.gene43051.t1 |
| Gene Sequence |
| Protein sequence |
