Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66767.t1 | XP_024636648.1 | 87.1 | 295 | 34 | 2 | 1 | 291 | 1 | 295 | 3.80E-137 | 497.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66767.t1 | Q9SGD1 | 61.5 | 270 | 73 | 6 | 40 | 281 | 69 | 335 | 4.3e-89 | 329.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66767.t1 | A0A396I4F5 | 87.1 | 295 | 34 | 2 | 1 | 291 | 1 | 295 | 2.7e-137 | 497.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66767.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66767.t1 | MTR_1g093095 | 75.758 | 165 | 36 | 2 | 102 | 262 | 89 | 253 | 7.10e-96 | 285 |
| MS.gene66767.t1 | MTR_4g059870 | 37.410 | 139 | 78 | 4 | 121 | 258 | 61 | 191 | 3.39e-20 | 90.5 |
| MS.gene66767.t1 | MTR_2g093960 | 33.333 | 159 | 95 | 4 | 114 | 268 | 48 | 199 | 6.88e-20 | 89.4 |
| MS.gene66767.t1 | MTR_1g016010 | 35.461 | 141 | 82 | 4 | 119 | 258 | 62 | 194 | 2.99e-19 | 87.8 |
| MS.gene66767.t1 | MTR_8g017210 | 30.000 | 180 | 114 | 5 | 81 | 258 | 45 | 214 | 2.22e-18 | 85.5 |
| MS.gene66767.t1 | MTR_2g099990 | 31.707 | 164 | 100 | 5 | 97 | 258 | 45 | 198 | 5.55e-18 | 84.0 |
| MS.gene66767.t1 | MTR_1g112270 | 34.014 | 147 | 85 | 5 | 114 | 258 | 60 | 196 | 8.34e-18 | 83.6 |
| MS.gene66767.t1 | MTR_1g112270 | 34.014 | 147 | 85 | 5 | 114 | 258 | 71 | 207 | 9.00e-18 | 83.6 |
| MS.gene66767.t1 | MTR_1g094115 | 34.014 | 147 | 85 | 6 | 114 | 258 | 63 | 199 | 1.30e-17 | 83.2 |
| MS.gene66767.t1 | MTR_1g094115 | 35.766 | 137 | 76 | 6 | 124 | 258 | 56 | 182 | 1.39e-17 | 82.8 |
| MS.gene66767.t1 | MTR_2g099990 | 34.815 | 135 | 76 | 5 | 126 | 258 | 5 | 129 | 9.59e-17 | 80.1 |
| MS.gene66767.t1 | MTR_2g090745 | 34.247 | 146 | 86 | 5 | 114 | 258 | 23 | 159 | 1.21e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66767.t1 | AT1G08290 | 53.636 | 330 | 92 | 7 | 9 | 282 | 12 | 336 | 8.18e-113 | 329 |
| MS.gene66767.t1 | AT3G57670 | 77.143 | 175 | 37 | 2 | 111 | 285 | 201 | 372 | 2.07e-102 | 304 |
| MS.gene66767.t1 | AT1G51220 | 52.817 | 284 | 102 | 5 | 11 | 262 | 30 | 313 | 4.24e-102 | 302 |
| MS.gene66767.t1 | AT3G20880 | 74.302 | 179 | 42 | 1 | 109 | 287 | 238 | 412 | 9.27e-102 | 303 |
| MS.gene66767.t1 | AT1G13290 | 70.312 | 192 | 47 | 4 | 73 | 262 | 55 | 238 | 5.11e-98 | 290 |
| MS.gene66767.t1 | AT1G34790 | 62.385 | 218 | 72 | 3 | 74 | 284 | 85 | 299 | 1.57e-94 | 281 |
| MS.gene66767.t1 | AT1G34370 | 37.931 | 174 | 91 | 7 | 121 | 285 | 28 | 193 | 4.43e-27 | 107 |
| MS.gene66767.t1 | AT1G34370 | 34.404 | 218 | 118 | 8 | 85 | 285 | 194 | 403 | 1.43e-26 | 108 |
| MS.gene66767.t1 | AT1G34370 | 34.404 | 218 | 118 | 8 | 85 | 285 | 194 | 403 | 1.43e-26 | 108 |
| MS.gene66767.t1 | AT5G22890 | 36.196 | 163 | 95 | 5 | 103 | 258 | 195 | 355 | 4.51e-24 | 100 |
| MS.gene66767.t1 | AT5G03150 | 35.714 | 140 | 79 | 5 | 121 | 258 | 76 | 206 | 3.60e-20 | 90.5 |
| MS.gene66767.t1 | AT5G66730 | 35.461 | 141 | 81 | 4 | 119 | 258 | 53 | 184 | 1.09e-19 | 89.4 |
| MS.gene66767.t1 | AT5G60470 | 36.691 | 139 | 79 | 4 | 121 | 258 | 58 | 188 | 3.98e-19 | 87.4 |
| MS.gene66767.t1 | AT1G55110 | 31.098 | 164 | 102 | 5 | 97 | 258 | 62 | 216 | 4.38e-19 | 87.0 |
| MS.gene66767.t1 | AT1G55110 | 31.098 | 164 | 102 | 5 | 97 | 258 | 62 | 216 | 4.38e-19 | 87.0 |
| MS.gene66767.t1 | AT1G55110 | 31.098 | 164 | 102 | 5 | 97 | 258 | 62 | 216 | 4.38e-19 | 87.0 |
| MS.gene66767.t1 | AT5G60470 | 36.691 | 139 | 79 | 4 | 121 | 258 | 63 | 193 | 5.77e-19 | 87.0 |
| MS.gene66767.t1 | AT5G60470 | 35.971 | 139 | 80 | 4 | 121 | 258 | 67 | 197 | 6.57e-19 | 86.7 |
| MS.gene66767.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 121 | 258 | 62 | 192 | 2.35e-18 | 85.1 |
| MS.gene66767.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 121 | 258 | 62 | 192 | 2.35e-18 | 85.1 |
| MS.gene66767.t1 | AT2G02080 | 30.864 | 162 | 102 | 4 | 98 | 258 | 54 | 206 | 3.68e-18 | 84.7 |
| MS.gene66767.t1 | AT2G02080 | 30.864 | 162 | 102 | 4 | 98 | 258 | 54 | 206 | 3.68e-18 | 84.7 |
| MS.gene66767.t1 | AT2G02080 | 30.864 | 162 | 102 | 4 | 98 | 258 | 54 | 206 | 3.68e-18 | 84.7 |
| MS.gene66767.t1 | AT2G02080 | 30.864 | 162 | 102 | 4 | 98 | 258 | 54 | 206 | 3.68e-18 | 84.7 |
| MS.gene66767.t1 | AT1G14580 | 31.902 | 163 | 99 | 5 | 98 | 258 | 53 | 205 | 3.79e-18 | 84.7 |
| MS.gene66767.t1 | AT1G14580 | 31.902 | 163 | 99 | 5 | 98 | 258 | 53 | 205 | 3.79e-18 | 84.7 |
| MS.gene66767.t1 | AT1G14580 | 31.902 | 163 | 99 | 5 | 98 | 258 | 67 | 219 | 3.90e-18 | 84.7 |
| MS.gene66767.t1 | AT2G02070 | 31.481 | 162 | 101 | 4 | 98 | 258 | 52 | 204 | 4.95e-18 | 84.3 |
| MS.gene66767.t1 | AT2G02070 | 31.481 | 162 | 101 | 4 | 98 | 258 | 52 | 204 | 4.95e-18 | 84.3 |
| MS.gene66767.t1 | AT5G44160 | 29.670 | 182 | 114 | 6 | 81 | 258 | 18 | 189 | 7.12e-18 | 83.6 |
| MS.gene66767.t1 | AT1G03840 | 32.515 | 163 | 100 | 5 | 97 | 258 | 40 | 193 | 9.17e-18 | 83.6 |
| MS.gene66767.t1 | AT3G13810 | 31.481 | 162 | 102 | 4 | 98 | 258 | 65 | 218 | 1.23e-17 | 83.2 |
| MS.gene66767.t1 | AT3G13810 | 31.481 | 162 | 102 | 4 | 98 | 258 | 70 | 223 | 1.29e-17 | 83.2 |
| MS.gene66767.t1 | AT3G13810 | 31.481 | 162 | 102 | 4 | 98 | 258 | 70 | 223 | 1.29e-17 | 83.2 |
| MS.gene66767.t1 | AT3G13810 | 31.481 | 162 | 102 | 4 | 98 | 258 | 51 | 204 | 1.32e-17 | 83.2 |
| MS.gene66767.t1 | AT2G02080 | 35.821 | 134 | 76 | 4 | 126 | 258 | 5 | 129 | 1.43e-17 | 82.8 |
| MS.gene66767.t1 | AT2G02080 | 35.821 | 134 | 76 | 4 | 126 | 258 | 5 | 129 | 1.43e-17 | 82.8 |
| MS.gene66767.t1 | AT3G13810 | 33.562 | 146 | 88 | 4 | 114 | 258 | 87 | 224 | 1.47e-17 | 82.8 |
| MS.gene66767.t1 | AT3G13810 | 33.562 | 146 | 88 | 4 | 114 | 258 | 73 | 210 | 1.56e-17 | 82.8 |
| MS.gene66767.t1 | AT3G50700 | 33.562 | 146 | 87 | 4 | 114 | 258 | 50 | 186 | 1.86e-17 | 82.4 |
| MS.gene66767.t1 | AT1G03840 | 34.247 | 146 | 86 | 5 | 114 | 258 | 55 | 191 | 2.01e-17 | 82.4 |
| MS.gene66767.t1 | AT5G44160 | 33.094 | 139 | 83 | 4 | 121 | 258 | 21 | 150 | 2.28e-17 | 82.0 |
| MS.gene66767.t1 | AT4G02670 | 34.247 | 146 | 87 | 4 | 114 | 258 | 71 | 208 | 2.58e-17 | 81.6 |
| MS.gene66767.t1 | AT4G02670 | 34.247 | 146 | 87 | 4 | 114 | 258 | 69 | 206 | 2.79e-17 | 81.6 |
| MS.gene66767.t1 | AT1G25250 | 28.986 | 138 | 90 | 4 | 119 | 254 | 31 | 162 | 1.91e-12 | 67.4 |
| MS.gene66767.t1 | AT1G68130 | 30.435 | 138 | 87 | 4 | 119 | 254 | 62 | 192 | 1.92e-12 | 67.4 |
| MS.gene66767.t1 | AT1G25250 | 28.986 | 138 | 90 | 4 | 119 | 254 | 54 | 185 | 3.09e-12 | 66.6 |
| MS.gene66767.t1 | AT2G01940 | 30.216 | 139 | 86 | 5 | 119 | 254 | 65 | 195 | 1.58e-11 | 64.7 |
Find 52 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATCATATTAGGTCTTT+TGG | 0.190747 | 4.3:-46767264 | MS.gene66767:CDS |
| GAAAACTTTGCACTCAAAAT+AGG | 0.212077 | 4.3:+46770111 | None:intergenic |
| AGAAAACCTTCCAGAGGTTT+TGG | 0.230422 | 4.3:-46769933 | MS.gene66767:CDS |
| CCATGCTACTGTTGTGTTCA+AGG | 0.271424 | 4.3:-46767504 | MS.gene66767:CDS |
| GATCTCTCAAAGATCATATT+AGG | 0.336377 | 4.3:-46767272 | MS.gene66767:CDS |
| GAGACTGTGGCTTTGCATAT+TGG | 0.341519 | 4.3:-46770036 | MS.gene66767:CDS |
| CATGTTGTTGTACCTATTGA+AGG | 0.355291 | 4.3:+46769846 | None:intergenic |
| AACTCAAAACCCTCAATTTG+TGG | 0.388963 | 4.3:+46770066 | None:intergenic |
| TCTTTCAAAGGCTTAGCTCT+TGG | 0.403693 | 4.3:+46767459 | None:intergenic |
| TATGAACTAGAGGAATTAGA+TGG | 0.411662 | 4.3:+46770195 | None:intergenic |
| TGTGTGCCTCTTAGTGAGTC+TGG | 0.423624 | 4.3:+46767549 | None:intergenic |
| AAAAGAATTGTGGCAAGTTA+TGG | 0.431308 | 4.3:-46767329 | MS.gene66767:CDS |
| TATGCAACAAAACCTTCAAT+AGG | 0.433146 | 4.3:-46769858 | MS.gene66767:CDS |
| ACTCCTGCACAGATCCTTGT+TGG | 0.433190 | 4.3:-46769904 | MS.gene66767:CDS |
| GGTAAAGAATATGGCAATGA+TGG | 0.440587 | 4.3:-46770259 | None:intergenic |
| GATTGATGATCAAGCTTTCG+AGG | 0.449639 | 4.3:-46767217 | MS.gene66767:CDS |
| ACGTCAAGTGCCACAAATTG+AGG | 0.451497 | 4.3:-46770076 | MS.gene66767:CDS |
| CATTTGCTGTGAAAGGTGAT+TGG | 0.459235 | 4.3:-46767362 | MS.gene66767:CDS |
| CCATTTATGTGTAGAAAATG+TGG | 0.488125 | 4.3:-46767390 | MS.gene66767:CDS |
| GGTAGCCTTAGCATTGCAGC+TGG | 0.491825 | 4.3:+46767525 | None:intergenic |
| AAGTTATGGTATTGCACTTG+TGG | 0.518903 | 4.3:-46767315 | MS.gene66767:CDS |
| TTTCTTCTTCTTCTTTAACA+TGG | 0.521689 | 4.3:+46769965 | None:intergenic |
| TTTCCATTAGATGCATATGT+GGG | 0.526101 | 4.3:-46767598 | MS.gene66767:intron |
| CGTCAAGTGCCACAAATTGA+GGG | 0.531074 | 4.3:-46770075 | MS.gene66767:CDS |
| CACAACCAGCTGCAATGCTA+AGG | 0.533499 | 4.3:-46767530 | MS.gene66767:CDS |
| AGAGTTCTAAAATCTTTCAA+AGG | 0.533941 | 4.3:+46767447 | None:intergenic |
| GAGTTGGTATCCAAAACCTC+TGG | 0.540847 | 4.3:+46769923 | None:intergenic |
| TCAAGCTTTCGAGGAGGAGA+AGG | 0.557211 | 4.3:-46767208 | MS.gene66767:CDS |
| ACAAGGATCTGTGCAGGAGT+TGG | 0.561642 | 4.3:+46769907 | None:intergenic |
| GGTCCAACAAGGATCTGTGC+AGG | 0.564499 | 4.3:+46769901 | None:intergenic |
| AGGACAATAATTTCATTGAG+TGG | 0.566958 | 4.3:-46770224 | MS.gene66767:CDS |
| TCCATTAGATGCATATGTGG+GGG | 0.571799 | 4.3:-46767596 | MS.gene66767:intron |
| AAAGGACCAGACTCACTAAG+AGG | 0.575770 | 4.3:-46767555 | MS.gene66767:CDS |
| TTGCTGTGAAAGGTGATTGG+AGG | 0.589362 | 4.3:-46767359 | MS.gene66767:CDS |
| TGAGTGGTGGAAGAAGAAGA+TGG | 0.593836 | 4.3:+46770156 | None:intergenic |
| CTTCTAAGAAAACCTTCCAG+AGG | 0.598395 | 4.3:-46769939 | MS.gene66767:CDS |
| TTCCATTAGATGCATATGTG+GGG | 0.605042 | 4.3:-46767597 | MS.gene66767:intron |
| CATTTATGTGTAGAAAATGT+GGG | 0.610048 | 4.3:-46767389 | MS.gene66767:CDS |
| ACTCACTACAAAAGAAAACA+TGG | 0.615968 | 4.3:-46767420 | MS.gene66767:CDS |
| AAAGCTTGATCATCAATCGA+AGG | 0.617239 | 4.3:+46767222 | None:intergenic |
| AGGACTCATGAAAAGAATTG+TGG | 0.623632 | 4.3:-46767339 | MS.gene66767:CDS |
| GGGAAAACATTTGCTGTGAA+AGG | 0.623807 | 4.3:-46767369 | MS.gene66767:CDS |
| TGAAGTTAGATATGAACTAG+AGG | 0.628204 | 4.3:+46770185 | None:intergenic |
| TGGTATCCAAAACCTCTGGA+AGG | 0.630382 | 4.3:+46769927 | None:intergenic |
| CATGGATCTGAATTTAGGAA+AGG | 0.631532 | 4.3:-46767573 | MS.gene66767:CDS |
| CAATAGGTACAACAACATGC+AGG | 0.634469 | 4.3:-46769842 | MS.gene66767:intron |
| TGAGTTCAAAGAAGAGACTG+TGG | 0.637308 | 4.3:-46770049 | MS.gene66767:CDS |
| ATGGAGCAAGAAAATTGCAT+AGG | 0.642845 | 4.3:+46769880 | None:intergenic |
| AAAATTGCATAGGTCCAACA+AGG | 0.669488 | 4.3:+46769890 | None:intergenic |
| CCTTGAACACAACAGTAGCA+TGG | 0.671135 | 4.3:+46767504 | None:intergenic |
| AATGATGGAGAGTGATGTAG+AGG | 0.688074 | 4.3:-46770244 | MS.gene66767:CDS |
| TGATGATCAAGCTTTCGAGG+AGG | 0.694755 | 4.3:-46767214 | MS.gene66767:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTTATTAATTGAGT+TGG | + | chr4.3:46769797-46769816 | None:intergenic | 10.0% |
| !! | AATTAATTAGTATAATCAAA+AGG | + | chr4.3:46769286-46769305 | None:intergenic | 10.0% |
| !! | ATAACAAAAAAAAATATAGA+TGG | - | chr4.3:46768181-46768200 | MS.gene66767:intron | 10.0% |
| !! | ATATAAATATAAATAAATGG+AGG | - | chr4.3:46769169-46769188 | MS.gene66767:intron | 10.0% |
| !! | TAACAAAAAAAAATATAGAT+GGG | - | chr4.3:46768182-46768201 | MS.gene66767:intron | 10.0% |
| !! | TATTGAATATAAAAACTATA+AGG | - | chr4.3:46767863-46767882 | MS.gene66767:intron | 10.0% |
| !!! | AACTGATTTTTTTAAATAAA+AGG | + | chr4.3:46768035-46768054 | None:intergenic | 10.0% |
| !!! | ATGATAATTTATCTTTTTTT+AGG | + | chr4.3:46769558-46769577 | None:intergenic | 10.0% |
| !!! | GTTTCTTTTATATTTTATTT+TGG | + | chr4.3:46769704-46769723 | None:intergenic | 10.0% |
| !! | AAATAGCCTATAAAAAAAAA+AGG | + | chr4.3:46768632-46768651 | None:intergenic | 15.0% |
| !! | TGAAAGATTAACAAAATTAT+TGG | - | chr4.3:46769417-46769436 | MS.gene66767:intron | 15.0% |
| !!! | AAGGCAAATTTTAATTATAA+GGG | - | chr4.3:46767972-46767991 | MS.gene66767:intron | 15.0% |
| !!! | AATTTGAAGTAAACAAATTA+AGG | + | chr4.3:46768496-46768515 | None:intergenic | 15.0% |
| !!! | ATTTGAAGTAAACAAATTAA+GGG | + | chr4.3:46768495-46768514 | None:intergenic | 15.0% |
| !!! | ATTTTAATTATAAGGGATTT+TGG | - | chr4.3:46767979-46767998 | MS.gene66767:intron | 15.0% |
| !!! | TATAGTTTTCCATTTTTTTA+GGG | + | chr4.3:46767706-46767725 | None:intergenic | 15.0% |
| !!! | TATTCTCCTTTTTTTTTTAT+AGG | - | chr4.3:46768623-46768642 | MS.gene66767:intron | 15.0% |
| !!! | TCAAAAAGTTAATTTTTCAT+CGG | - | chr4.3:46768797-46768816 | MS.gene66767:intron | 15.0% |
| !!! | TGGAAACATTTTTTTTTTTT+TGG | + | chr4.3:46768571-46768590 | None:intergenic | 15.0% |
| !!! | TTATAGTTTTCCATTTTTTT+AGG | + | chr4.3:46767707-46767726 | None:intergenic | 15.0% |
| !! | AAAATTATTGGCAACAATTA+TGG | - | chr4.3:46769429-46769448 | MS.gene66767:intron | 20.0% |
| !! | AAGAAAACAAAACAAAACTT+TGG | - | chr4.3:46769255-46769274 | MS.gene66767:intron | 20.0% |
| !! | CAGTTACTTATAAAGAAAAA+TGG | - | chr4.3:46767672-46767691 | MS.gene66767:intron | 20.0% |
| !!! | AATTAACTTTTTGAAAGTGA+AGG | + | chr4.3:46768791-46768810 | None:intergenic | 20.0% |
| !!! | ACGTTTTTAATACTTAGTAA+TGG | + | chr4.3:46769034-46769053 | None:intergenic | 20.0% |
| !!! | ATAGTTTTCCATTTTTTTAG+GGG | + | chr4.3:46767705-46767724 | None:intergenic | 20.0% |
| !!! | ATTAACTTTTTGAAAGTGAA+GGG | + | chr4.3:46768790-46768809 | None:intergenic | 20.0% |
| !!! | CAAGGCAAATTTTAATTATA+AGG | - | chr4.3:46767971-46767990 | MS.gene66767:intron | 20.0% |
| !!! | TATGGTCTAATTTAAAGTAA+GGG | - | chr4.3:46769509-46769528 | MS.gene66767:intron | 20.0% |
| !!! | TGAAGATCAATTTTATTTCT+TGG | - | chr4.3:46769060-46769079 | MS.gene66767:intron | 20.0% |
| !!! | TTATGGTCTAATTTAAAGTA+AGG | - | chr4.3:46769508-46769527 | MS.gene66767:intron | 20.0% |
| !!! | TTGTTTTATTTCAACATTCA+TGG | - | chr4.3:46769343-46769362 | MS.gene66767:intron | 20.0% |
| ! | AATCAAAGATGACATGAATT+AGG | - | chr4.3:46769665-46769684 | MS.gene66767:intron | 25.0% |
| ! | ACAAAACAGACAATATTCTA+GGG | + | chr4.3:46768914-46768933 | None:intergenic | 25.0% |
| ! | ATAAATAAATGGAGGACATT+GGG | - | chr4.3:46769177-46769196 | MS.gene66767:intron | 25.0% |
| ! | ATTCGTAAGTAAATTTAGTG+AGG | + | chr4.3:46767786-46767805 | None:intergenic | 25.0% |
| ! | CAAAAAAAAATATAGATGGG+AGG | - | chr4.3:46768185-46768204 | MS.gene66767:intron | 25.0% |
| ! | CATTTATGTGTAGAAAATGT+GGG | - | chr4.3:46770024-46770043 | MS.gene66767:CDS | 25.0% |
| ! | TACAACAATTTCTTCTCTTA+AGG | - | chr4.3:46769604-46769623 | MS.gene66767:intron | 25.0% |
| ! | TATAAATAAATGGAGGACAT+TGG | - | chr4.3:46769176-46769195 | MS.gene66767:intron | 25.0% |
| ! | TTCGTAAGTAAATTTAGTGA+GGG | + | chr4.3:46767785-46767804 | None:intergenic | 25.0% |
| ! | TTTCTTCTCTTAAGGTTATA+TGG | - | chr4.3:46769612-46769631 | MS.gene66767:intron | 25.0% |
| ! | TTTCTTCTTCTTCTTTAACA+TGG | + | chr4.3:46767451-46767470 | None:intergenic | 25.0% |
| ! | TTTGTTAATCTTTCACTGAT+GGG | + | chr4.3:46769412-46769431 | None:intergenic | 25.0% |
| !! | AAAGATCATATTAGGTCTTT+TGG | - | chr4.3:46770149-46770168 | MS.gene66767:CDS | 25.0% |
| !! | ATAGTAATTTGTCAAAAGGA+GGG | - | chr4.3:46769202-46769221 | MS.gene66767:intron | 25.0% |
| !! | GTTAATTTTCAACCCAAAAA+AGG | + | chr4.3:46768891-46768910 | None:intergenic | 25.0% |
| !! | TTGTATAGTTTCATTTTGAG+TGG | + | chr4.3:46767276-46767295 | None:intergenic | 25.0% |
| !! | TTTTGTTAATCTTTCACTGA+TGG | + | chr4.3:46769413-46769432 | None:intergenic | 25.0% |
| !!! | AGAGTTCTAAAATCTTTCAA+AGG | + | chr4.3:46769969-46769988 | None:intergenic | 25.0% |
| !!! | ATCATCAAGATATGTTTTAG+TGG | + | chr4.3:46767414-46767433 | None:intergenic | 25.0% |
| !!! | ATTTGTGTTAGACCTTTTTT+GGG | - | chr4.3:46768876-46768895 | MS.gene66767:intron | 25.0% |
| !!! | TATTTGTGTTAGACCTTTTT+TGG | - | chr4.3:46768875-46768894 | MS.gene66767:intron | 25.0% |
| AAAAGAATTGTGGCAAGTTA+TGG | - | chr4.3:46770084-46770103 | MS.gene66767:CDS | 30.0% | |
| AAAGGAGAATATCAAATTGC+TGG | + | chr4.3:46768614-46768633 | None:intergenic | 30.0% | |
| AAGACAAGAAGAGAAAAGTT+AGG | + | chr4.3:46768704-46768723 | None:intergenic | 30.0% | |
| ACAATTATGGTCATATAGCT+AGG | - | chr4.3:46769442-46769461 | MS.gene66767:intron | 30.0% | |
| ACTCACTACAAAAGAAAACA+TGG | - | chr4.3:46769993-46770012 | MS.gene66767:CDS | 30.0% | |
| AGACAAGAAGAGAAAAGTTA+GGG | + | chr4.3:46768703-46768722 | None:intergenic | 30.0% | |
| AGGACAATAATTTCATTGAG+TGG | - | chr4.3:46767189-46767208 | MS.gene66767:CDS | 30.0% | |
| ATAGATTAGCACCTACATTT+AGG | - | chr4.3:46768519-46768538 | MS.gene66767:intron | 30.0% | |
| ATAGCTAGGTCAAATAATTC+AGG | - | chr4.3:46769456-46769475 | MS.gene66767:intron | 30.0% | |
| ATCGGTTATGATCATTTCAA+AGG | - | chr4.3:46768815-46768834 | MS.gene66767:intron | 30.0% | |
| CAAAACAGACAATATTCTAG+GGG | + | chr4.3:46768913-46768932 | None:intergenic | 30.0% | |
| CACAAAACAGACAATATTCT+AGG | + | chr4.3:46768915-46768934 | None:intergenic | 30.0% | |
| CCATTTATGTGTAGAAAATG+TGG | - | chr4.3:46770023-46770042 | MS.gene66767:CDS | 30.0% | |
| CTTTGTGTTTGTCAAATTCA+TGG | + | chr4.3:46768591-46768610 | None:intergenic | 30.0% | |
| GAAAAACTCCCCTAAAAAAA+TGG | - | chr4.3:46767694-46767713 | MS.gene66767:intron | 30.0% | |
| GAAAACTTTGCACTCAAAAT+AGG | + | chr4.3:46767305-46767324 | None:intergenic | 30.0% | |
| GATCTCTCAAAGATCATATT+AGG | - | chr4.3:46770141-46770160 | MS.gene66767:CDS | 30.0% | |
| TAAAAACTATAAGGTCTAGC+AGG | - | chr4.3:46767872-46767891 | MS.gene66767:intron | 30.0% | |
| TAAATAAATGGAGGACATTG+GGG | - | chr4.3:46769178-46769197 | MS.gene66767:intron | 30.0% | |
| TATGAACTAGAGGAATTAGA+TGG | + | chr4.3:46767221-46767240 | None:intergenic | 30.0% | |
| TATGCAACAAAACCTTCAAT+AGG | - | chr4.3:46767555-46767574 | MS.gene66767:CDS | 30.0% | |
| TCGGTTATGATCATTTCAAA+GGG | - | chr4.3:46768816-46768835 | MS.gene66767:intron | 30.0% | |
| TGAAGTTAGATATGAACTAG+AGG | + | chr4.3:46767231-46767250 | None:intergenic | 30.0% | |
| TTGTTAATCTTTCACTGATG+GGG | + | chr4.3:46769411-46769430 | None:intergenic | 30.0% | |
| TTTCCATTAGATGCATATGT+GGG | - | chr4.3:46769815-46769834 | MS.gene66767:intron | 30.0% | |
| ! | ATATTGTCTGTTTTGTGTGT+TGG | - | chr4.3:46768918-46768937 | MS.gene66767:intron | 30.0% |
| ! | CATAGTAATTTGTCAAAAGG+AGG | - | chr4.3:46769201-46769220 | MS.gene66767:intron | 30.0% |
| ! | CCACATTTTCTACACATAAA+TGG | + | chr4.3:46770026-46770045 | None:intergenic | 30.0% |
| ! | GTTTTCTTTTGTAGTGAGTT+TGG | + | chr4.3:46769992-46770011 | None:intergenic | 30.0% |
| ! | TTTTCCATTAGATGCATATG+TGG | - | chr4.3:46769814-46769833 | MS.gene66767:intron | 30.0% |
| !! | CATATTAGGTCTTTTGGAAA+AGG | - | chr4.3:46770155-46770174 | MS.gene66767:CDS | 30.0% |
| !! | TATAGTTTCATTTTGAGTGG+TGG | + | chr4.3:46767273-46767292 | None:intergenic | 30.0% |
| !! | TTTGTGTGTTGGTTAGTTAA+GGG | - | chr4.3:46768929-46768948 | MS.gene66767:intron | 30.0% |
| !!! | AAGTTCCTTCATTTTTTGAG+TGG | - | chr4.3:46767948-46767967 | MS.gene66767:intron | 30.0% |
| !!! | ATTGAAGGTTTTGTTGCATA+TGG | + | chr4.3:46767555-46767574 | None:intergenic | 30.0% |
| !!! | TAAAAGGAGCATCAGTTTTT+AGG | - | chr4.3:46768424-46768443 | MS.gene66767:intron | 30.0% |
| !!! | TTTTGTGTGTTGGTTAGTTA+AGG | - | chr4.3:46768928-46768947 | MS.gene66767:intron | 30.0% |
| AAAATTGCATAGGTCCAACA+AGG | + | chr4.3:46767526-46767545 | None:intergenic | 35.0% | |
| AAAGCTTGATCATCAATCGA+AGG | + | chr4.3:46770194-46770213 | None:intergenic | 35.0% | |
| AACTCAAAACCCTCAATTTG+TGG | + | chr4.3:46767350-46767369 | None:intergenic | 35.0% | |
| AAGAAGAGAAAAGTTAGGGA+AGG | + | chr4.3:46768699-46768718 | None:intergenic | 35.0% | |
| AAGTTATGGTATTGCACTTG+TGG | - | chr4.3:46770098-46770117 | MS.gene66767:CDS | 35.0% | |
| AGGACTCATGAAAAGAATTG+TGG | - | chr4.3:46770074-46770093 | MS.gene66767:CDS | 35.0% | |
| ATGGAGCAAGAAAATTGCAT+AGG | + | chr4.3:46767536-46767555 | None:intergenic | 35.0% | |
| CATGGATCTGAATTTAGGAA+AGG | - | chr4.3:46769840-46769859 | MS.gene66767:intron | 35.0% | |
| CATGTTGTTGTACCTATTGA+AGG | + | chr4.3:46767570-46767589 | None:intergenic | 35.0% | |
| CTAAAAATAGAGCTAGCAAC+AGG | - | chr4.3:46768976-46768995 | MS.gene66767:intron | 35.0% | |
| TATGGTGATCTCTCGTTATT+GGG | + | chr4.3:46768233-46768252 | None:intergenic | 35.0% | |
| TTATGGTGATCTCTCGTTAT+TGG | + | chr4.3:46768234-46768253 | None:intergenic | 35.0% | |
| TTCCATTAGATGCATATGTG+GGG | - | chr4.3:46769816-46769835 | MS.gene66767:intron | 35.0% | |
| ! | GGGCATAGTAATTTGTCAAA+AGG | - | chr4.3:46769198-46769217 | MS.gene66767:intron | 35.0% |
| ! | TAATTTGTCAAAAGGAGGGT+AGG | - | chr4.3:46769206-46769225 | MS.gene66767:intron | 35.0% |
| !!! | AGATATGTTTTAGTGGCATG+AGG | + | chr4.3:46767407-46767426 | None:intergenic | 35.0% |
| AAAGTGAAGGGAATGCTAGA+GGG | + | chr4.3:46768778-46768797 | None:intergenic | 40.0% | |
| AGAGATAGATGGAGAGAAGT+CGG | - | chr4.3:46768288-46768307 | MS.gene66767:intron | 40.0% | |
| AGCACCTACATTTAGGCATA+CGG | - | chr4.3:46768526-46768545 | MS.gene66767:intron | 40.0% | |
| CAATAGGTACAACAACATGC+AGG | - | chr4.3:46767571-46767590 | MS.gene66767:CDS | 40.0% | |
| CCTTGCCACTCAAAAAATGA+AGG | + | chr4.3:46767956-46767975 | None:intergenic | 40.0% | |
| TAATCTTTCACTGATGGGGT+AGG | + | chr4.3:46769407-46769426 | None:intergenic | 40.0% | |
| TCAAACTGATAGGGCATACA+GGG | + | chr4.3:46768376-46768395 | None:intergenic | 40.0% | |
| TCCATTAGATGCATATGTGG+GGG | - | chr4.3:46769817-46769836 | MS.gene66767:intron | 40.0% | |
| TGAGTTCAAAGAAGAGACTG+TGG | - | chr4.3:46767364-46767383 | MS.gene66767:CDS | 40.0% | |
| TTCCAAGACGAGAACTTCAT+TGG | - | chr4.3:46768466-46768485 | MS.gene66767:intron | 40.0% | |
| TTCTACTTAACTGCGAGAGA+GGG | - | chr4.3:46769112-46769131 | MS.gene66767:intron | 40.0% | |
| TTCTCTCCATCTATCTCTCT+GGG | + | chr4.3:46768286-46768305 | None:intergenic | 40.0% | |
| TTGTCCGTATGCCTAAATGT+AGG | + | chr4.3:46768533-46768552 | None:intergenic | 40.0% | |
| TTTCTACTTAACTGCGAGAG+AGG | - | chr4.3:46769111-46769130 | MS.gene66767:intron | 40.0% | |
| ! | AATGATGGAGAGTGATGTAG+AGG | - | chr4.3:46767169-46767188 | MS.gene66767:CDS | 40.0% |
| ! | ACTGATGCTCCTTTTATGAG+TGG | + | chr4.3:46768420-46768439 | None:intergenic | 40.0% |
| ! | AGAAAACCTTCCAGAGGTTT+TGG | - | chr4.3:46767480-46767499 | MS.gene66767:CDS | 40.0% |
| ! | CTCGTTATTGGGACTCTTTT+GGG | + | chr4.3:46768222-46768241 | None:intergenic | 40.0% |
| ! | CTGATGCTCCTTTTATGAGT+GGG | + | chr4.3:46768419-46768438 | None:intergenic | 40.0% |
| ! | CTTCTAAGAAAACCTTCCAG+AGG | - | chr4.3:46767474-46767493 | MS.gene66767:CDS | 40.0% |
| ! | GATTGATGATCAAGCTTTCG+AGG | - | chr4.3:46770196-46770215 | MS.gene66767:CDS | 40.0% |
| ! | TCTCGTTATTGGGACTCTTT+TGG | + | chr4.3:46768223-46768242 | None:intergenic | 40.0% |
| ! | TCTTTCAAAGGCTTAGCTCT+TGG | + | chr4.3:46769957-46769976 | None:intergenic | 40.0% |
| ! | TTTAGAGGCGGTGTTTGTTA+TGG | + | chr4.3:46768251-46768270 | None:intergenic | 40.0% |
| !! | CATTTGCTGTGAAAGGTGAT+TGG | - | chr4.3:46770051-46770070 | MS.gene66767:CDS | 40.0% |
| !! | CTCTGGAAGGTTTTCTTAGA+AGG | + | chr4.3:46767476-46767495 | None:intergenic | 40.0% |
| !! | GGGAAAACATTTGCTGTGAA+AGG | - | chr4.3:46770044-46770063 | MS.gene66767:CDS | 40.0% |
| !!! | CCTTCATTTTTTGAGTGGCA+AGG | - | chr4.3:46767953-46767972 | MS.gene66767:intron | 40.0% |
| AAAGGACCAGACTCACTAAG+AGG | - | chr4.3:46769858-46769877 | MS.gene66767:CDS | 45.0% | |
| ACGTCAAGTGCCACAAATTG+AGG | - | chr4.3:46767337-46767356 | MS.gene66767:CDS | 45.0% | |
| ATAGATGGAGAGAAGTCGGA+TGG | - | chr4.3:46768292-46768311 | MS.gene66767:intron | 45.0% | |
| ATCCCGTGCTCAAACTGATA+GGG | + | chr4.3:46768385-46768404 | None:intergenic | 45.0% | |
| ATGCCCTATCAGTTTGAGCA+CGG | - | chr4.3:46768379-46768398 | MS.gene66767:intron | 45.0% | |
| CCATGCTACTGTTGTGTTCA+AGG | - | chr4.3:46769909-46769928 | MS.gene66767:CDS | 45.0% | |
| CCTTGAACACAACAGTAGCA+TGG | + | chr4.3:46769912-46769931 | None:intergenic | 45.0% | |
| CGTCAAGTGCCACAAATTGA+GGG | - | chr4.3:46767338-46767357 | MS.gene66767:CDS | 45.0% | |
| CTATAAGGTCTAGCAGGAGA+AGG | - | chr4.3:46767878-46767897 | MS.gene66767:intron | 45.0% | |
| CTCAAACTGATAGGGCATAC+AGG | + | chr4.3:46768377-46768396 | None:intergenic | 45.0% | |
| CTTCTCTCCATCTATCTCTC+TGG | + | chr4.3:46768287-46768306 | None:intergenic | 45.0% | |
| GAAAGTGAAGGGAATGCTAG+AGG | + | chr4.3:46768779-46768798 | None:intergenic | 45.0% | |
| GTGTAGGACATGTAACATCG+AGG | - | chr4.3:46769228-46769247 | MS.gene66767:intron | 45.0% | |
| TATCAGTTTGAGCACGGGAT+AGG | - | chr4.3:46768385-46768404 | MS.gene66767:intron | 45.0% | |
| TATCCCGTGCTCAAACTGAT+AGG | + | chr4.3:46768386-46768405 | None:intergenic | 45.0% | |
| TCGAGCTAGCTATAGCTAGA+TGG | - | chr4.3:46768742-46768761 | MS.gene66767:intron | 45.0% | |
| TCGTCTTGGAAACGACTCAT+TGG | + | chr4.3:46768457-46768476 | None:intergenic | 45.0% | |
| TGATGATCAAGCTTTCGAGG+AGG | - | chr4.3:46770199-46770218 | MS.gene66767:CDS | 45.0% | |
| TGCCAATGAAGTTCTCGTCT+TGG | + | chr4.3:46768471-46768490 | None:intergenic | 45.0% | |
| TGGTATCCAAAACCTCTGGA+AGG | + | chr4.3:46767489-46767508 | None:intergenic | 45.0% | |
| TTGCACCTCCCACTCATAAA+AGG | - | chr4.3:46768408-46768427 | MS.gene66767:intron | 45.0% | |
| TTGCTGTGAAAGGTGATTGG+AGG | - | chr4.3:46770054-46770073 | MS.gene66767:CDS | 45.0% | |
| ! | ATGCTCCTTTTATGAGTGGG+AGG | + | chr4.3:46768416-46768435 | None:intergenic | 45.0% |
| ! | GAGACTGTGGCTTTGCATAT+TGG | - | chr4.3:46767377-46767396 | MS.gene66767:CDS | 45.0% |
| ! | TGAGTGGTGGAAGAAGAAGA+TGG | + | chr4.3:46767260-46767279 | None:intergenic | 45.0% |
| !! | GAGTTGGTATCCAAAACCTC+TGG | + | chr4.3:46767493-46767512 | None:intergenic | 45.0% |
| !!! | TGGGTTGGTGATTTTAGAGG+CGG | + | chr4.3:46768263-46768282 | None:intergenic | 45.0% |
| !! | ACTATATAAATATAAATAAA+TGG | - | chr4.3:46769166-46769185 | MS.gene66767:intron | 5.0% |
| !!! | GATTATTATTTATTTTTTTA+TGG | - | chr4.3:46769491-46769510 | MS.gene66767:intron | 5.0% |
| !!! | TATATTTTTTTTTGTTATAT+CGG | + | chr4.3:46768179-46768198 | None:intergenic | 5.0% |
| !!! | TTTCTTTTATATTTTATTTT+GGG | + | chr4.3:46769703-46769722 | None:intergenic | 5.0% |
| AACCCACCCAGAGAGATAGA+TGG | - | chr4.3:46768277-46768296 | MS.gene66767:intron | 50.0% | |
| ACAAGGATCTGTGCAGGAGT+TGG | + | chr4.3:46767509-46767528 | None:intergenic | 50.0% | |
| ACTCCTGCACAGATCCTTGT+TGG | - | chr4.3:46767509-46767528 | MS.gene66767:CDS | 50.0% | |
| ATCTATCTCTCTGGGTGGGT+TGG | + | chr4.3:46768278-46768297 | None:intergenic | 50.0% | |
| ATGGAGAGAAGTCGGATGGA+GGG | - | chr4.3:46768296-46768315 | MS.gene66767:intron | 50.0% | |
| CACAACCAGCTGCAATGCTA+AGG | - | chr4.3:46769883-46769902 | MS.gene66767:CDS | 50.0% | |
| CTCCATCTATCTCTCTGGGT+GGG | + | chr4.3:46768282-46768301 | None:intergenic | 50.0% | |
| GAATGCTAGAGGGACACAAG+AGG | + | chr4.3:46768768-46768787 | None:intergenic | 50.0% | |
| GATAGGGCATACAGGGTTGT+TGG | + | chr4.3:46768369-46768388 | None:intergenic | 50.0% | |
| GCATACAGGGTTGTTGGAGA+TGG | + | chr4.3:46768363-46768382 | None:intergenic | 50.0% | |
| GCCCCCACATATGCATCTAA+TGG | + | chr4.3:46769821-46769840 | None:intergenic | 50.0% | |
| GTCAAAAGGAGGGTAGGTGT+AGG | - | chr4.3:46769212-46769231 | MS.gene66767:intron | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr4.3:46769822-46769841 | MS.gene66767:intron | 50.0% | |
| TCAAGCTTTCGAGGAGGAGA+AGG | - | chr4.3:46770205-46770224 | MS.gene66767:CDS | 50.0% | |
| TCTCCATCTATCTCTCTGGG+TGG | + | chr4.3:46768283-46768302 | None:intergenic | 50.0% | |
| TGCCCTATCAGTTTGAGCAC+GGG | - | chr4.3:46768380-46768399 | MS.gene66767:intron | 50.0% | |
| TGTGTGCCTCTTAGTGAGTC+TGG | + | chr4.3:46769867-46769886 | None:intergenic | 50.0% | |
| ! | GGGGGCATGGATCTGAATTT+AGG | - | chr4.3:46769835-46769854 | MS.gene66767:intron | 50.0% |
| !!! | GGGTGGGTTGGTGATTTTAG+AGG | + | chr4.3:46768266-46768285 | None:intergenic | 50.0% |
| ATGGATCACGATCGCCTGGT+TGG | + | chr4.3:46768344-46768363 | None:intergenic | 55.0% | |
| GAGCAGCCATAAGACCAACC+AGG | - | chr4.3:46768327-46768346 | MS.gene66767:intron | 55.0% | |
| GATGGAGAGAAGTCGGATGG+AGG | - | chr4.3:46768295-46768314 | MS.gene66767:intron | 55.0% | |
| GGTCCAACAAGGATCTGTGC+AGG | + | chr4.3:46767515-46767534 | None:intergenic | 55.0% | |
| TGGAGAGAAGTCGGATGGAG+GGG | - | chr4.3:46768297-46768316 | MS.gene66767:intron | 55.0% | |
| ! | GGTAGCCTTAGCATTGCAGC+TGG | + | chr4.3:46769891-46769910 | None:intergenic | 55.0% |
| !! | CGATCGCCTGGTTGGTCTTA+TGG | + | chr4.3:46768336-46768355 | None:intergenic | 55.0% |
| GGAGATGGATCACGATCGCC+TGG | + | chr4.3:46768348-46768367 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46767164 | 46770271 | 46767164 | ID=MS.gene66767 |
| chr4.3 | mRNA | 46767164 | 46770271 | 46767164 | ID=MS.gene66767.t1;Parent=MS.gene66767 |
| chr4.3 | exon | 46769843 | 46770271 | 46769843 | ID=MS.gene66767.t1.exon1;Parent=MS.gene66767.t1 |
| chr4.3 | CDS | 46769843 | 46770271 | 46769843 | ID=cds.MS.gene66767.t1;Parent=MS.gene66767.t1 |
| chr4.3 | exon | 46767164 | 46767610 | 46767164 | ID=MS.gene66767.t1.exon2;Parent=MS.gene66767.t1 |
| chr4.3 | CDS | 46767164 | 46767610 | 46767164 | ID=cds.MS.gene66767.t1;Parent=MS.gene66767.t1 |
| Gene Sequence |
| Protein sequence |
