Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84339.t1 | XP_024631624.1 | 97.4 | 311 | 5 | 2 | 1 | 310 | 1 | 309 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84339.t1 | Q9SGD1 | 57.8 | 334 | 96 | 12 | 10 | 300 | 5 | 336 | 1.1e-95 | 351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84339.t1 | A0A396JBA6 | 97.4 | 311 | 5 | 2 | 1 | 310 | 1 | 309 | 7.7e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84339.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84339.t1 | MTR_1g093095 | 77.707 | 157 | 32 | 1 | 131 | 284 | 99 | 255 | 5.23e-94 | 280 |
| MS.gene84339.t1 | MTR_4g059870 | 38.129 | 139 | 77 | 4 | 141 | 278 | 61 | 191 | 4.06e-20 | 90.9 |
| MS.gene84339.t1 | MTR_2g093960 | 35.616 | 146 | 85 | 4 | 134 | 278 | 48 | 185 | 1.51e-19 | 88.6 |
| MS.gene84339.t1 | MTR_1g016010 | 36.170 | 141 | 81 | 4 | 139 | 278 | 62 | 194 | 6.39e-19 | 87.0 |
| MS.gene84339.t1 | MTR_1g112270 | 34.694 | 147 | 84 | 5 | 134 | 278 | 60 | 196 | 3.97e-18 | 85.1 |
| MS.gene84339.t1 | MTR_2g090745 | 34.932 | 146 | 85 | 5 | 134 | 278 | 23 | 159 | 4.16e-18 | 84.7 |
| MS.gene84339.t1 | MTR_1g112270 | 34.694 | 147 | 84 | 5 | 134 | 278 | 71 | 207 | 4.21e-18 | 85.1 |
| MS.gene84339.t1 | MTR_1g094115 | 34.694 | 147 | 84 | 5 | 134 | 278 | 63 | 199 | 6.47e-18 | 84.3 |
| MS.gene84339.t1 | MTR_8g017210 | 35.714 | 140 | 78 | 6 | 141 | 278 | 85 | 214 | 7.17e-18 | 84.3 |
| MS.gene84339.t1 | MTR_1g094115 | 36.496 | 137 | 75 | 5 | 144 | 278 | 56 | 182 | 9.22e-18 | 84.0 |
| MS.gene84339.t1 | MTR_2g099990 | 34.694 | 147 | 84 | 6 | 134 | 278 | 62 | 198 | 1.97e-17 | 82.8 |
| MS.gene84339.t1 | MTR_2g099990 | 36.296 | 135 | 74 | 6 | 146 | 278 | 5 | 129 | 1.31e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84339.t1 | AT1G08290 | 57.784 | 334 | 96 | 12 | 10 | 300 | 5 | 336 | 4.90e-117 | 341 |
| MS.gene84339.t1 | AT1G51220 | 51.438 | 313 | 108 | 6 | 19 | 306 | 43 | 336 | 4.20e-103 | 305 |
| MS.gene84339.t1 | AT3G20880 | 62.719 | 228 | 68 | 2 | 84 | 294 | 176 | 403 | 1.38e-100 | 301 |
| MS.gene84339.t1 | AT3G57670 | 58.776 | 245 | 68 | 4 | 84 | 296 | 122 | 365 | 6.22e-100 | 299 |
| MS.gene84339.t1 | AT1G13290 | 65.347 | 202 | 52 | 4 | 84 | 283 | 54 | 239 | 2.57e-93 | 279 |
| MS.gene84339.t1 | AT1G34790 | 60.090 | 223 | 80 | 3 | 84 | 303 | 83 | 299 | 6.34e-93 | 278 |
| MS.gene84339.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 141 | 289 | 28 | 182 | 2.31e-28 | 111 |
| MS.gene84339.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 141 | 289 | 238 | 392 | 9.57e-28 | 112 |
| MS.gene84339.t1 | AT1G34370 | 39.241 | 158 | 84 | 5 | 141 | 289 | 238 | 392 | 9.57e-28 | 112 |
| MS.gene84339.t1 | AT5G22890 | 39.073 | 151 | 84 | 4 | 141 | 284 | 211 | 360 | 1.51e-24 | 102 |
| MS.gene84339.t1 | AT5G03150 | 36.691 | 139 | 79 | 4 | 141 | 278 | 76 | 206 | 4.08e-20 | 90.9 |
| MS.gene84339.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.08e-18 | 86.7 |
| MS.gene84339.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.08e-18 | 86.7 |
| MS.gene84339.t1 | AT1G55110 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.08e-18 | 86.7 |
| MS.gene84339.t1 | AT5G66730 | 35.915 | 142 | 79 | 5 | 139 | 278 | 53 | 184 | 1.67e-18 | 86.3 |
| MS.gene84339.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 141 | 278 | 58 | 188 | 1.68e-18 | 85.9 |
| MS.gene84339.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 141 | 278 | 67 | 197 | 1.79e-18 | 85.9 |
| MS.gene84339.t1 | AT5G60470 | 37.410 | 139 | 78 | 4 | 141 | 278 | 63 | 193 | 1.80e-18 | 85.9 |
| MS.gene84339.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.27e-18 | 85.9 |
| MS.gene84339.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.27e-18 | 85.9 |
| MS.gene84339.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.27e-18 | 85.9 |
| MS.gene84339.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.27e-18 | 85.9 |
| MS.gene84339.t1 | AT4G02670 | 35.616 | 146 | 85 | 4 | 134 | 278 | 71 | 208 | 2.47e-18 | 85.1 |
| MS.gene84339.t1 | AT4G02670 | 35.616 | 146 | 85 | 4 | 134 | 278 | 69 | 206 | 2.59e-18 | 85.1 |
| MS.gene84339.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.15e-18 | 85.1 |
| MS.gene84339.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.15e-18 | 85.1 |
| MS.gene84339.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.72e-18 | 85.1 |
| MS.gene84339.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.72e-18 | 85.1 |
| MS.gene84339.t1 | AT2G02080 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.22e-18 | 84.3 |
| MS.gene84339.t1 | AT2G02080 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.22e-18 | 84.3 |
| MS.gene84339.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.12e-18 | 84.0 |
| MS.gene84339.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.12e-18 | 84.0 |
| MS.gene84339.t1 | AT1G14580 | 34.247 | 146 | 86 | 4 | 134 | 278 | 83 | 219 | 7.55e-18 | 84.0 |
| MS.gene84339.t1 | AT1G03840 | 34.932 | 146 | 85 | 5 | 134 | 278 | 57 | 193 | 1.72e-17 | 83.2 |
| MS.gene84339.t1 | AT1G03840 | 34.932 | 146 | 85 | 5 | 134 | 278 | 55 | 191 | 1.73e-17 | 83.2 |
| MS.gene84339.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 141 | 278 | 60 | 189 | 1.77e-17 | 82.8 |
| MS.gene84339.t1 | AT5G44160 | 32.877 | 146 | 88 | 4 | 134 | 278 | 14 | 150 | 1.86e-17 | 82.8 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 2.88e-17 | 82.4 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 2.88e-17 | 82.4 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 81 | 218 | 3.14e-17 | 82.4 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 87 | 224 | 3.17e-17 | 82.4 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 67 | 204 | 3.38e-17 | 82.4 |
| MS.gene84339.t1 | AT3G50700 | 34.247 | 146 | 86 | 4 | 134 | 278 | 50 | 186 | 3.39e-17 | 82.0 |
| MS.gene84339.t1 | AT3G13810 | 34.247 | 146 | 87 | 4 | 134 | 278 | 73 | 210 | 3.69e-17 | 82.0 |
| MS.gene84339.t1 | AT1G68130 | 31.655 | 139 | 84 | 5 | 139 | 274 | 62 | 192 | 1.70e-12 | 67.8 |
| MS.gene84339.t1 | AT1G25250 | 29.710 | 138 | 89 | 4 | 139 | 274 | 31 | 162 | 2.07e-12 | 67.4 |
| MS.gene84339.t1 | AT1G25250 | 30.216 | 139 | 87 | 5 | 139 | 274 | 54 | 185 | 2.93e-12 | 67.0 |
| MS.gene84339.t1 | AT2G01940 | 30.216 | 139 | 86 | 5 | 139 | 274 | 65 | 195 | 4.98e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATTTAATATGACTA+AGG | + | 14740:83615-83634 | MS.gene84339:intron | 10.0% |
| !! | TTAGTCATATTAAATTATAT+TGG | - | 14740:83616-83635 | None:intergenic | 10.0% |
| !!! | AATAATTAAATTTTATACAC+GGG | - | 14740:83439-83458 | None:intergenic | 10.0% |
| !! | AAATAGAGATAAAATATATG+TGG | - | 14740:85064-85083 | None:intergenic | 15.0% |
| !! | AATAGTTCAATTAATTACAT+TGG | + | 14740:83152-83171 | MS.gene84339:intron | 15.0% |
| !! | GATAGACAAAAAAATTATAT+GGG | + | 14740:83984-84003 | MS.gene84339:intron | 15.0% |
| !! | TGATAGACAAAAAAATTATA+TGG | + | 14740:83983-84002 | MS.gene84339:intron | 15.0% |
| !!! | ATAAATTTGAAATAAAGTGA+CGG | - | 14740:83320-83339 | None:intergenic | 15.0% |
| !!! | ATTTTATCTCTATTTTATGT+AGG | + | 14740:85069-85088 | MS.gene84339:intron | 15.0% |
| !!! | CATTATTTCATAGTTTTTTT+AGG | - | 14740:85159-85178 | None:intergenic | 15.0% |
| !!! | TAAAAAAACTGATTTATGTT+TGG | - | 14740:84669-84688 | None:intergenic | 15.0% |
| !! | AAAACCTAAGTACAAATTAA+GGG | - | 14740:84177-84196 | None:intergenic | 20.0% |
| !! | AAATAGCATAGTTTATAGTT+GGG | - | 14740:83221-83240 | None:intergenic | 20.0% |
| !! | AATGTTTGATCTAATTCATA+AGG | - | 14740:84322-84341 | None:intergenic | 20.0% |
| !! | AATTTGTATTTAGTAGTCTT+AGG | + | 14740:82820-82839 | MS.gene84339:intron | 20.0% |
| !! | ACTATTGAAGTGATAAAATA+TGG | - | 14740:83138-83157 | None:intergenic | 20.0% |
| !! | TAAAACCTAAGTACAAATTA+AGG | - | 14740:84178-84197 | None:intergenic | 20.0% |
| !! | TAAATAGCATAGTTTATAGT+TGG | - | 14740:83222-83241 | None:intergenic | 20.0% |
| !! | TAAGTATAATTATGTGACTT+TGG | - | 14740:83506-83525 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTGTCTATCAC+AGG | - | 14740:83982-84001 | None:intergenic | 20.0% |
| !!! | ATTCAAAAGTATTTGATAAG+AGG | - | 14740:83932-83951 | None:intergenic | 20.0% |
| !!! | TCACATTTTTTAAAGTGTAA+AGG | - | 14740:83748-83767 | None:intergenic | 20.0% |
| !!! | TCTTATCAAGAATTTTTCAA+GGG | + | 14740:82795-82814 | MS.gene84339:intron | 20.0% |
| !!! | TTCAAAAGTATTTGATAAGA+GGG | - | 14740:83931-83950 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTCTTATGTAAT+TGG | - | 14740:84843-84862 | None:intergenic | 20.0% |
| ! | AAAAATGTGAGCAAAATGAA+TGG | + | 14740:83758-83777 | MS.gene84339:intron | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | - | 14740:84578-84597 | None:intergenic | 25.0% |
| ! | ACAAAAAAATTATATGGGAG+AGG | + | 14740:83989-84008 | MS.gene84339:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | 14740:84610-84629 | None:intergenic | 25.0% |
| ! | AGGTGTTTAACATTATGATT+AGG | + | 14740:83635-83654 | MS.gene84339:intron | 25.0% |
| ! | AGTTTATCTCTATTCTATGT+GGG | + | 14740:85012-85031 | MS.gene84339:intron | 25.0% |
| ! | ATATTGGAAAGGAAATACAA+AGG | - | 14740:83872-83891 | None:intergenic | 25.0% |
| ! | ATTATGTACCCATTATATGT+AGG | - | 14740:84992-85011 | None:intergenic | 25.0% |
| ! | ATTTCCTTTCCAATATCAAA+GGG | + | 14740:83876-83895 | MS.gene84339:intron | 25.0% |
| ! | CAAAAGAAAAGAAAACCTAA+GGG | - | 14740:82856-82875 | None:intergenic | 25.0% |
| ! | CATACTTATTCACCTTAAAA+AGG | - | 14740:84945-84964 | None:intergenic | 25.0% |
| ! | CATATTGTTGTATCTATTGA+AGG | - | 14740:82598-82617 | None:intergenic | 25.0% |
| ! | GAAAGCAAATTTCTCTTATA+GGG | + | 14740:82875-82894 | MS.gene84339:intron | 25.0% |
| ! | GAATTGATAAAGGGAAATAA+AGG | - | 14740:84569-84588 | None:intergenic | 25.0% |
| ! | GGGAAATAAAGGAAAATAAT+AGG | - | 14740:84558-84577 | None:intergenic | 25.0% |
| ! | TAAAAACTGGAAAGTTTCTT+GGG | - | 14740:82274-82293 | None:intergenic | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | - | 14740:84579-84598 | None:intergenic | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | 14740:84593-84612 | None:intergenic | 25.0% |
| ! | TAAGAAGTTATGTGTATGAA+TGG | - | 14740:83114-83133 | None:intergenic | 25.0% |
| ! | TAGTTTATCTCTATTCTATG+TGG | + | 14740:85011-85030 | MS.gene84339:intron | 25.0% |
| ! | TATTTCCTTTCCAATATCAA+AGG | + | 14740:83875-83894 | MS.gene84339:intron | 25.0% |
| ! | TCAAAAGAAAAGAAAACCTA+AGG | - | 14740:82857-82876 | None:intergenic | 25.0% |
| ! | TGAAAGCAAATTTCTCTTAT+AGG | + | 14740:82874-82893 | MS.gene84339:intron | 25.0% |
| ! | TGCTTGATGCATATATAATA+GGG | + | 14740:84144-84163 | MS.gene84339:intron | 25.0% |
| ! | TTATGTACCCATTATATGTA+GGG | - | 14740:84991-85010 | None:intergenic | 25.0% |
| ! | TTCAAATTAGATAAGAGAGA+TGG | + | 14740:83014-83033 | MS.gene84339:intron | 25.0% |
| ! | TTGCTTGATGCATATATAAT+AGG | + | 14740:84143-84162 | MS.gene84339:intron | 25.0% |
| !! | AAGATATGGTCTTTTACTAT+AGG | - | 14740:83845-83864 | None:intergenic | 25.0% |
| !! | AATGATTGTTTTCTTCTTGA+TGG | - | 14740:83674-83693 | None:intergenic | 25.0% |
| !! | AGAAAAATTGTGGAAAGTTT+TGG | + | 14740:85489-85508 | MS.gene84339:CDS | 25.0% |
| !! | AGGGTTTTTCCAAATAATAT+CGG | + | 14740:85038-85057 | MS.gene84339:intron | 25.0% |
| !! | ATTTTTCCCTAAAAATCGAA+GGG | - | 14740:82736-82755 | None:intergenic | 25.0% |
| !! | GTCTTATCAAGAATTTTTCA+AGG | + | 14740:82794-82813 | MS.gene84339:intron | 25.0% |
| !! | TATTTTTCCCTAAAAATCGA+AGG | - | 14740:82737-82756 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | 14740:84713-84732 | None:intergenic | 25.0% |
| !! | TTTAATCTGTACTTCTTTTG+TGG | + | 14740:84194-84213 | MS.gene84339:intron | 25.0% |
| !!! | CTTTTTAAGGTGAATAAGTA+TGG | + | 14740:84943-84962 | MS.gene84339:intron | 25.0% |
| !!! | TAAGGTTTTTGATTGTGTTA+AGG | + | 14740:82449-82468 | MS.gene84339:CDS | 25.0% |
| !!! | TGTTCTTAACTTTAGTTTTG+TGG | - | 14740:84064-84083 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTAAAAGAAGAGA+AGG | + | 14740:82350-82369 | MS.gene84339:CDS | 25.0% |
| !!! | TTTTTTTGACAAAACAGCAT+AGG | - | 14740:83382-83401 | None:intergenic | 25.0% |
| AAAATTCCCCTAAAAATCGA+AGG | - | 14740:82675-82694 | None:intergenic | 30.0% | |
| AAACCCCAAATTTCATTGAA+TGG | + | 14740:82181-82200 | MS.gene84339:CDS | 30.0% | |
| AAAGATCATGTTAGATCCTT+CGG | + | 14740:85554-85573 | MS.gene84339:CDS | 30.0% | |
| AAATTCCCCTAAAAATCGAA+GGG | - | 14740:82674-82693 | None:intergenic | 30.0% | |
| ACTCATTACAAAAGAAAGCA+TGG | + | 14740:85398-85417 | MS.gene84339:CDS | 30.0% | |
| AGAACTCATGAGAAAAATTG+TGG | + | 14740:85479-85498 | MS.gene84339:CDS | 30.0% | |
| AGCCAGTATATACAACTATT+AGG | + | 14740:84038-84057 | MS.gene84339:intron | 30.0% | |
| ATAGTAACGAAGGATATAGA+GGG | - | 14740:83465-83484 | None:intergenic | 30.0% | |
| ATTTGTCATCATAGTAACGA+AGG | - | 14740:83475-83494 | None:intergenic | 30.0% | |
| CAATAGATACAACAATATGC+AGG | + | 14740:82599-82618 | MS.gene84339:CDS | 30.0% | |
| GAAAGCAAAAAGAAATGAGA+GGG | - | 14740:83726-83745 | None:intergenic | 30.0% | |
| GTAAAAACTGGAAAGTTTCT+TGG | - | 14740:82275-82294 | None:intergenic | 30.0% | |
| GTTGCGATCAAGAAAATATA+TGG | - | 14740:85121-85140 | None:intergenic | 30.0% | |
| TATATGTGGCCGATATTATT+TGG | - | 14740:85050-85069 | None:intergenic | 30.0% | |
| TATGTACCCATTATATGTAG+GGG | - | 14740:84990-85009 | None:intergenic | 30.0% | |
| TGAACATGATGAGAAGAATA+AGG | + | 14740:82431-82450 | MS.gene84339:CDS | 30.0% | |
| TGAGCCATTCAATGAAATTT+GGG | - | 14740:82188-82207 | None:intergenic | 30.0% | |
| TTAGGTCAATAATTTCCCTT+AGG | + | 14740:82838-82857 | MS.gene84339:intron | 30.0% | |
| TTGAGCCATTCAATGAAATT+TGG | - | 14740:82189-82208 | None:intergenic | 30.0% | |
| ! | AAGAGCCTTTTACTAAAAGT+TGG | - | 14740:83812-83831 | None:intergenic | 30.0% |
| ! | AATACAAAGGCATGAAGATA+TGG | - | 14740:83859-83878 | None:intergenic | 30.0% |
| ! | AATATATGGCCAGTGTTATT+TGG | - | 14740:85107-85126 | None:intergenic | 30.0% |
| ! | AGAGCCTTTTACTAAAAGTT+GGG | - | 14740:83811-83830 | None:intergenic | 30.0% |
| ! | AGCAAGAATTCACCTTTTTA+AGG | + | 14740:84930-84949 | MS.gene84339:intron | 30.0% |
| ! | AGTTTGTGTTGATGAGTTAA+AGG | - | 14740:82249-82268 | None:intergenic | 30.0% |
| ! | CTCTATTTTATGTAGGACTT+GGG | + | 14740:85076-85095 | MS.gene84339:intron | 30.0% |
| ! | GAACATTTTCTGCAGATAAA+TGG | - | 14740:85431-85450 | None:intergenic | 30.0% |
| ! | GTATCCCAACTTTTAGTAAA+AGG | + | 14740:83804-83823 | MS.gene84339:intron | 30.0% |
| ! | TCTCTATTTTATGTAGGACT+TGG | + | 14740:85075-85094 | MS.gene84339:intron | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | + | 14740:82665-82684 | MS.gene84339:intron | 30.0% |
| ! | TTCTAGAAAAGCTAGAAGTT+AGG | - | 14740:84496-84515 | None:intergenic | 30.0% |
| ! | TTCTTAACCCTTCGATTTTT+AGG | + | 14740:82664-82683 | MS.gene84339:intron | 30.0% |
| !! | ATCACCCTTAATTTGTACTT+AGG | + | 14740:84170-84189 | MS.gene84339:intron | 30.0% |
| !! | TCTAAAGCATTTGCTGTTAA+AGG | + | 14740:85449-85468 | MS.gene84339:CDS | 30.0% |
| !! | TGTATATACTGGCTCTTAAT+GGG | - | 14740:84032-84051 | None:intergenic | 30.0% |
| !! | TTGTATATACTGGCTCTTAA+TGG | - | 14740:84033-84052 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | 14740:84403-84422 | None:intergenic | 30.0% |
| ACTCTGTATTAGTGTGTGTT+TGG | - | 14740:84805-84824 | None:intergenic | 35.0% | |
| AGATACAACAATATGCAGGT+TGG | + | 14740:82603-82622 | MS.gene84339:intron | 35.0% | |
| AGGTGAATAAGTATGGTATC+CGG | + | 14740:84950-84969 | MS.gene84339:intron | 35.0% | |
| AGTTAGGATTTGTAGCTTCA+TGG | - | 14740:84480-84499 | None:intergenic | 35.0% | |
| ATTGAAGGTCTTACTGCATA+TGG | - | 14740:82583-82602 | None:intergenic | 35.0% | |
| CAAAAACAACGTGTTTGGTT+TGG | + | 14740:84417-84436 | MS.gene84339:intron | 35.0% | |
| CACTAGAGATTGGTAAAAAC+TGG | - | 14740:82287-82306 | None:intergenic | 35.0% | |
| CATAGTAACGAAGGATATAG+AGG | - | 14740:83466-83485 | None:intergenic | 35.0% | |
| CATGGATCAGAATTTAGGAA+AGG | + | 14740:85245-85264 | MS.gene84339:CDS | 35.0% | |
| GAATTGAAGAAAAACGTGCA+TGG | + | 14740:82477-82496 | MS.gene84339:CDS | 35.0% | |
| GAGCCATTCAATGAAATTTG+GGG | - | 14740:82187-82206 | None:intergenic | 35.0% | |
| GGAAAGCAAAAAGAAATGAG+AGG | - | 14740:83727-83746 | None:intergenic | 35.0% | |
| GGCCTAATAGTTGTATATAC+TGG | - | 14740:84043-84062 | None:intergenic | 35.0% | |
| GGTCATGTTAAACTAGCATA+GGG | - | 14740:83418-83437 | None:intergenic | 35.0% | |
| GTCATGTTAAACTAGCATAG+GGG | - | 14740:83417-83436 | None:intergenic | 35.0% | |
| TCATGTTAAACTAGCATAGG+GGG | - | 14740:83416-83435 | None:intergenic | 35.0% | |
| TGAAGTAAAAGAAGAGAAGG+TGG | + | 14740:82353-82372 | MS.gene84339:CDS | 35.0% | |
| TTGCGTATGAAGTATGAACT+AGG | - | 14740:83080-83099 | None:intergenic | 35.0% | |
| ! | AATCTTCATTTTGCATCCCA+TGG | - | 14740:82332-82351 | None:intergenic | 35.0% |
| ! | ATTTTGCAGATGCATATGTG+GGG | + | 14740:85221-85240 | MS.gene84339:intron | 35.0% |
| ! | CAATGAAATTTGGGGTTTGA+AGG | - | 14740:82179-82198 | None:intergenic | 35.0% |
| ! | CAGTTTTTACCAATCTCTAG+TGG | + | 14740:82285-82304 | MS.gene84339:CDS | 35.0% |
| ! | CATTTTGCAGATGCATATGT+GGG | + | 14740:85220-85239 | MS.gene84339:intron | 35.0% |
| ! | GTGTTTAAAATCTGAACCAC+AGG | - | 14740:85522-85541 | None:intergenic | 35.0% |
| ! | TCATTTTGCAGATGCATATG+TGG | + | 14740:85219-85238 | MS.gene84339:intron | 35.0% |
| ! | TGGGTTTTTCCAAATAACAC+TGG | + | 14740:85095-85114 | MS.gene84339:intron | 35.0% |
| ! | TTTTGACAAAACAGCATAGG+AGG | - | 14740:83379-83398 | None:intergenic | 35.0% |
| !! | ACAATATGCAGGTTGGTAAT+TGG | + | 14740:82610-82629 | MS.gene84339:intron | 35.0% |
| !! | AGAGTTCTGAAATCCTTCAA+TGG | - | 14740:85374-85393 | None:intergenic | 35.0% |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | 14740:84419-84438 | None:intergenic | 35.0% |
| !! | CATTTGCTGTTAAAGGTGAT+TGG | + | 14740:85456-85475 | MS.gene84339:CDS | 35.0% |
| !! | CTTAACCCTTCGATTTTTAG+GGG | + | 14740:82666-82685 | MS.gene84339:intron | 35.0% |
| !!! | CGTGCATGGTTTTTGTTTTA+AGG | + | 14740:82491-82510 | MS.gene84339:CDS | 35.0% |
| !!! | GCATGGTTTTTGTTTTAAGG+AGG | + | 14740:82494-82513 | MS.gene84339:CDS | 35.0% |
| !!! | TTTGTTTTAAGGAGGAGAGA+AGG | + | 14740:82502-82521 | MS.gene84339:CDS | 35.0% |
| AAAGGACCAGACTCACTTAA+AGG | + | 14740:85263-85282 | MS.gene84339:CDS | 40.0% | |
| CACACCCTTTGATATTGGAA+AGG | - | 14740:83883-83902 | None:intergenic | 40.0% | |
| CATCATCATCGATGTGATTC+TGG | - | 14740:84874-84893 | None:intergenic | 40.0% | |
| CATGTTAGATCCTTCGGAAA+AGG | + | 14740:85560-85579 | MS.gene84339:CDS | 40.0% | |
| CATTGCACACCCTTTGATAT+TGG | - | 14740:83888-83907 | None:intergenic | 40.0% | |
| CCATGTTATTGTTGTGCTCA+CGG | + | 14740:85314-85333 | MS.gene84339:CDS | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | + | 14740:84412-84431 | MS.gene84339:intron | 40.0% | |
| CTCTATTCTATGTGGGACTA+GGG | + | 14740:85019-85038 | MS.gene84339:intron | 40.0% | |
| CTTAATTGTGCGTCTTGTGT+CGG | + | 14740:83342-83361 | MS.gene84339:intron | 40.0% | |
| GAGAAAGAATGCAGCAATAC+TGG | + | 14740:85620-85639 | MS.gene84339:CDS | 40.0% | |
| GATGATGAGAGTGAGGAATT+AGG | - | 14740:82216-82235 | None:intergenic | 40.0% | |
| GGCTTAATTCCACTAGAGAT+TGG | - | 14740:82297-82316 | None:intergenic | 40.0% | |
| GGGTCATGTTAAACTAGCAT+AGG | - | 14740:83419-83438 | None:intergenic | 40.0% | |
| TAAAAGTTGGGATACCCTAG+CGG | - | 14740:83799-83818 | None:intergenic | 40.0% | |
| TACCCATTATATGTAGGGGT+CGG | - | 14740:84986-85005 | None:intergenic | 40.0% | |
| TAGTGGAATTAAGCCCTATG+AGG | + | 14740:82302-82321 | MS.gene84339:CDS | 40.0% | |
| TCAGATTCACATCCTACGTT+AGG | - | 14740:82411-82430 | None:intergenic | 40.0% | |
| TCCAAGAGCAAAACCATTGA+AGG | + | 14740:85358-85377 | MS.gene84339:CDS | 40.0% | |
| TCTCTATTCTATGTGGGACT+AGG | + | 14740:85018-85037 | MS.gene84339:intron | 40.0% | |
| TCTTCAAAGCCTTCAAGAGA+AGG | - | 14740:85599-85618 | None:intergenic | 40.0% | |
| TGATGAGTTAAAGGCGATGA+AGG | - | 14740:82240-82259 | None:intergenic | 40.0% | |
| TGTGTTCCTTTAAGTGAGTC+TGG | - | 14740:85272-85291 | None:intergenic | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | 14740:84466-84485 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGAGAAGGTTT+TGG | + | 14740:82508-82527 | MS.gene84339:CDS | 40.0% |
| ! | TTTTGCAGATGCATATGTGG+GGG | + | 14740:85222-85241 | MS.gene84339:intron | 40.0% |
| !! | AAGTTTTGGTATTGCACCTG+TGG | + | 14740:85503-85522 | MS.gene84339:CDS | 40.0% |
| !! | GTGATTCTGGATTAGCTCTT+TGG | - | 14740:84861-84880 | None:intergenic | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | 14740:84463-84482 | None:intergenic | 40.0% |
| !! | TCCTTCAATGGTTTTGCTCT+TGG | - | 14740:85362-85381 | None:intergenic | 40.0% |
| AAAAGTTGGGATACCCTAGC+GGG | - | 14740:83798-83817 | None:intergenic | 45.0% | |
| AAGCCTTCAAGAGAAGGAAG+TGG | - | 14740:85593-85612 | None:intergenic | 45.0% | |
| ACAAGAATCTGAGCAGGAGT+TGG | - | 14740:82537-82556 | None:intergenic | 45.0% | |
| ACCCATTATATGTAGGGGTC+GGG | - | 14740:84985-85004 | None:intergenic | 45.0% | |
| ACTCCTGCTCAGATTCTTGT+TGG | + | 14740:82537-82556 | MS.gene84339:CDS | 45.0% | |
| AGCCTTCAAGAGAAGGAAGT+GGG | - | 14740:85592-85611 | None:intergenic | 45.0% | |
| ATGGAGCAAGCAAACTGCAT+AGG | - | 14740:82564-82583 | None:intergenic | 45.0% | |
| CACATTGGATTGCCTAACGT+AGG | + | 14740:82396-82415 | MS.gene84339:CDS | 45.0% | |
| CCGTGAGCACAACAATAACA+TGG | - | 14740:85317-85336 | None:intergenic | 45.0% | |
| GATGAGAGTGAGGAATTAGG+TGG | - | 14740:82213-82232 | None:intergenic | 45.0% | |
| TGAAGGAGATGATGAGAGTG+AGG | - | 14740:82223-82242 | None:intergenic | 45.0% | |
| !!! | TAATAATTAAATTTTATACA+CGG | - | 14740:83440-83459 | None:intergenic | 5.0% |
| ACCCCGACCCCTACATATAA+TGG | + | 14740:84980-84999 | MS.gene84339:intron | 50.0% | |
| ATCCCATGGTCGTCCTCATA+GGG | - | 14740:82318-82337 | None:intergenic | 50.0% | |
| CACAACCAGCAGCAATGCTA+AGG | + | 14740:85288-85307 | MS.gene84339:CDS | 50.0% | |
| CCCATTATATGTAGGGGTCG+GGG | - | 14740:84984-85003 | None:intergenic | 50.0% | |
| CCCCGACCCCTACATATAAT+GGG | + | 14740:84981-85000 | MS.gene84339:intron | 50.0% | |
| GAAGGTGGAACATGTGACTG+TGG | + | 14740:82368-82387 | MS.gene84339:CDS | 50.0% | |
| GCCTTCAAGAGAAGGAAGTG+GGG | - | 14740:85591-85610 | None:intergenic | 50.0% | |
| GGTCCAACAAGAATCTGAGC+AGG | - | 14740:82543-82562 | None:intergenic | 50.0% | |
| TCCCCACTTCCTTCTCTTGA+AGG | + | 14740:85587-85606 | MS.gene84339:CDS | 50.0% | |
| ! | GGGGGCATGGATCAGAATTT+AGG | + | 14740:85240-85259 | MS.gene84339:CDS | 50.0% |
| ! | GTGACTGTGGCTTTGCACAT+TGG | + | 14740:82381-82400 | MS.gene84339:CDS | 50.0% |
| ! | TGGGGAATGACCTTTTCCGA+AGG | - | 14740:85573-85592 | None:intergenic | 50.0% |
| AAGCCCTATGAGGACGACCA+TGG | + | 14740:82312-82331 | MS.gene84339:CDS | 55.0% | |
| AGCCCTATGAGGACGACCAT+GGG | + | 14740:82313-82332 | MS.gene84339:CDS | 55.0% | |
| CAGATGCATATGTGGGGGCA+TGG | + | 14740:85227-85246 | MS.gene84339:intron | 55.0% | |
| CATCCCATGGTCGTCCTCAT+AGG | - | 14740:82319-82338 | None:intergenic | 55.0% | |
| ! | GGTAGCCTTAGCATTGCTGC+TGG | - | 14740:85296-85315 | None:intergenic | 55.0% |
| TTGGGATACCCTAGCGGGAG+CGG | - | 14740:83793-83812 | None:intergenic | 60.0% | |
| TTGTTGTCCCGCTCCCGCTA+GGG | + | 14740:83782-83801 | MS.gene84339:intron | 60.0% | |
| AGGGGTCGGGGTTCGAACTC+CGG | - | 14740:84972-84991 | None:intergenic | 65.0% | |
| TGGGATACCCTAGCGGGAGC+GGG | - | 14740:83792-83811 | None:intergenic | 65.0% | |
| ! | CTTGTTGTCCCGCTCCCGCT+AGG | + | 14740:83781-83800 | MS.gene84339:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 14740 | gene | 82132 | 85673 | 82132 | ID=MS.gene84339 |
| 14740 | mRNA | 82132 | 85673 | 82132 | ID=MS.gene84339.t1;Parent=MS.gene84339 |
| 14740 | exon | 82132 | 82620 | 82132 | ID=MS.gene84339.t1.exon1;Parent=MS.gene84339.t1 |
| 14740 | CDS | 82132 | 82620 | 82132 | ID=cds.MS.gene84339.t1;Parent=MS.gene84339.t1 |
| 14740 | exon | 85230 | 85673 | 85230 | ID=MS.gene84339.t1.exon2;Parent=MS.gene84339.t1 |
| 14740 | CDS | 85230 | 85673 | 85230 | ID=cds.MS.gene84339.t1;Parent=MS.gene84339.t1 |
| Gene Sequence |
| Protein sequence |
