AlfalfaGEDB | MS.gene034468

M. sativa cultivar XinJiangDaYe / MS.gene034468

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034468.t1	XP_024631624.1	97.1	244	5	1	1	244	1	242	1.60E-140	508.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034468.t1	Q9SGD1	52.5	280	81	11	10	244	5	277	3.1e-65	250.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034468.t1	A0A396JBA6	97.1	244	5	1	1	244	1	242	1.1e-140	508.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene034468.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006630	MS.gene034468	PPI
MS.gene009073	MS.gene034468	PPI
MS.gene01038	MS.gene034468	PPI
MS.gene019278	MS.gene034468	PPI
MS.gene034468	MS.gene019280	PPI
MS.gene034468	MS.gene050322	PPI
MS.gene034468	MS.gene72994	PPI
MS.gene034468	MS.gene031675	PPI
MS.gene034468	MS.gene007227	PPI
MS.gene034468	MS.gene036865	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034468.t1	MTR_1g093095	75.000	116	26	1	132	244	99	214	3.66e-63	201
MS.gene034468.t1	MTR_4g059870	35.922	103	59	2	142	244	61	156	4.40e-12	66.2
MS.gene034468.t1	MTR_2g093960	32.727	110	67	2	135	244	48	150	1.71e-11	64.3
MS.gene034468.t1	MTR_1g016010	34.286	105	62	2	140	244	62	159	5.27e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034468.t1	AT1G08290	52.878	278	87	11	8	244	3	277	2.50e-80	246
MS.gene034468.t1	AT1G51220	50.000	248	86	6	19	244	43	274	1.61e-72	226
MS.gene034468.t1	AT3G20880	60.452	177	54	2	84	244	176	352	5.16e-71	224
MS.gene034468.t1	AT3G57670	66.000	150	40	2	95	244	175	313	7.27e-69	218
MS.gene034468.t1	AT1G34790	58.385	161	65	1	84	244	83	241	1.82e-63	201
MS.gene034468.t1	AT1G13290	59.509	163	47	4	84	244	54	199	6.91e-63	200
MS.gene034468.t1	AT1G34370	34.014	147	78	5	142	276	28	167	2.87e-15	74.7
MS.gene034468.t1	AT1G34370	36.364	110	60	3	142	243	238	345	4.11e-15	75.5
MS.gene034468.t1	AT1G34370	36.364	110	60	3	142	243	238	345	4.11e-15	75.5
MS.gene034468.t1	AT5G22890	35.185	108	64	2	142	243	211	318	1.40e-12	67.4

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Find 48 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCCAAATTTCATTGAA+TGG	0.361241	2.3:+12654728	MS.gene034468:CDS
AAAGGACCAGACTCACTTAA+AGG	0.304674	2.3:+12657412	MS.gene034468:CDS
AAGCCCTATGAGGACAACCA+TGG	0.608837	2.3:+12654859	MS.gene034468:CDS
AATGGAGAATTGTTTGCTAC+TGG	0.377265	2.3:+12658260	MS.gene034468:CDS
ACAAGAATTTGAGCAGGAGT+TGG	0.541700	2.3:-12655084	None:intergenic
ACAATTCTCCATTAATTTCA+TGG	0.264188	2.3:-12658250	None:intergenic
ACTCATTACAAAAGAAAGCA+TGG	0.557148	2.3:+12657547	MS.gene034468:CDS
ACTCCTGCTCAAATTCTTGT+TGG	0.396733	2.3:+12655087	MS.gene034468:CDS
AGAGTTCTGAAATCCTTCAA+TGG	0.482663	2.3:-12657520	None:intergenic
AGCCCTATGAGGACAACCAT+GGG	0.622008	2.3:+12654860	MS.gene034468:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCCAAATTTCATTGAA+TGG	+	chr2.3:12654728-12654747	MS.gene034468:CDS	30.0%
AAAGATCATGTTAGATCCTT+CGG	+	chr2.3:12657703-12657722	MS.gene034468:intron	30.0%
ACAATATGCAGGTTAGTAAT+TGG	+	chr2.3:12655160-12655179	MS.gene034468:intron	30.0%
ACTCATTACAAAAGAAAGCA+TGG	+	chr2.3:12657547-12657566	MS.gene034468:CDS	30.0%
ATAGGGACAAAAAATGATGA+TGG	-	chr2.3:12656940-12656959	None:intergenic	30.0%
ATAGTAACGAAGGATATAGA+GGG	-	chr2.3:12656047-12656066	None:intergenic	30.0%
ATATCGGAAAGGAAATACAA+AGG	-	chr2.3:12656449-12656468	None:intergenic	30.0%
ATTGAAAGTCTTACTGCATA+TGG	-	chr2.3:12655133-12655152	None:intergenic	30.0%
ATTTCCTTTCCGATATCAAA+GGG	+	chr2.3:12656453-12656472	MS.gene034468:intron	30.0%
ATTTGTCATCATAGTAACGA+AGG	-	chr2.3:12656057-12656076	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	12654679	12658322	12654679	ID=MS.gene034468
chr2.3	mRNA	12654679	12658322	12654679	ID=MS.gene034468.t1;Parent=MS.gene034468
chr2.3	exon	12654679	12655170	12654679	ID=MS.gene034468.t1.exon1;Parent=MS.gene034468.t1
chr2.3	CDS	12654679	12655170	12654679	ID=cds.MS.gene034468.t1;Parent=MS.gene034468.t1
chr2.3	exon	12657379	12657619	12657379	ID=MS.gene034468.t1.exon2;Parent=MS.gene034468.t1
chr2.3	CDS	12657379	12657619	12657379	ID=cds.MS.gene034468.t1;Parent=MS.gene034468.t1
chr2.3	exon	12658222	12658322	12658222	ID=MS.gene034468.t1.exon3;Parent=MS.gene034468.t1
chr2.3	CDS	12658222	12658322	12658222	ID=cds.MS.gene034468.t1;Parent=MS.gene034468.t1

Gene Sequence

>MS.gene034468

ATGGGTTTGAGGGATCAGTGCAATGTAGAAGACAAGAATCTCTACCTTCAAACCCCAAATTTCATTGAATGGCTCAAACCACCTAATTCCTCACTCTCATCATCTCCTTCATCGCCTTTAACTCATCAACACAAACTATCCCAAGAAACTTTCCAGTTTTTACCAATCTCTAGTGGAATTAAGCCCTATGAGGACAACCATGGGATGCAAAATGAAGATTTTGAAGTAAAAGAAGAGAAGGTGGAACATGTGACTGTGACTTTGCACATTGGATTGCCTAACATAGGAGGTCATGAATCTGATGAACATGATGAGAAGAATAAGGTTTTTGATTGTGTTAAGGAAGAAGAATTGAAGAAAAACGTGCATGGTTTTTGTTTTAAGGAAGAGAGAAGGTTTTGGATACCAACTCCTGCTCAAATTCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGCAGTAAGACTTTCAATAGATACAACAATATGCAGGTTAGTAATTGGTTCTCAATTTCTCATATTGATATATATTTTTTCTTAACCCTTCTATTTTTAGGGGAAAAGATTTTGATAATTTAAACTTCATATATTTTTTCTTCTTAACCCTTCGATTTTTAGGAAAAAATATTTTGATAATTTAAGTTCAATTGAGACGAAGTAAAGTTTTATCAAGAATTATTCAAGGCATAATTCATATTTAGTAGTCTTAGGTCAATAATTTCCCTTAGGTTTTCTTTTCTTTTGAAAGCAAATTTCTCTTATAGGGATAAAAGTTAATTAGAATTTCTGTTACAGTATATTATTTACTCATAATTTAACATATGTGCAAAGAACAAATATACACTTATTTTTAAGTCAAGATTATAAAGATAGGATCAATAATCATTCTAATCAGATAAGAGAGACGGAGATATTGAAAATTAAGCAATCATGCATGTTTTTTCATATCCTAGTTCATACTTCATACGCAACTTTTTTCTTTCCATTCATACACATAACTTCTTATCCATATTTTATCACTTCAATAGTTCAATTAATTGCATGGTAATTAAGTACTTAATTGATGAAATAAATCGATCATGTCTTCACCCAACTATAGACTATGCTATTTAAGTTCAAAATTATTTTTTTTTTTTGAAGGAAAGTTCAAAATTATTGATATTATTTTTTAAAAACAATCTATTGATTAAGTACATGAATAAGTTTTTCTTGAACATATACCGTCACTTTATTTCAAATTTATTTCTTAATTGTGCGTCTTGTGTCGGTTAATAGTTCTCCTCCTATGCTGTTTTGTCAAAAAAACAAAATGTTATCCTCCTATGCTAGTTTAACATGACCCATGTATAAAATTTAATTATTAAACCCTCTATATCCTTCGTTACTATGATGACAAATTTCTGCGTCCAAAGTCACATAATTATACTTACTAATAATGCACATCTCTATTTTTTTTTTTTTTTGTGACATGAATGTGCATTTAGAACTTGAATTATTTACTCTATATATATCCAATATAATTTAATATGACTAAGGTGTTTAACATTATGATTAGGAGGACGAAGATAACCATCAAGAAGAAAACAATCATTCAATTAAATGACTAATCTTTGATGCATGACCCTCTCATTTATTTTTGCTTTCCTTTACACTTTAAAAAATGTGAGCAAAATGAATGGCTTGTTGTCCCGCACCCGCTAGGGTATCCCAACTTTTAGTAAAAGGCTCTTTCAGTTTTATCCTATAGTAAAAGACCATATCTTCATGCCTTTGTATTTCCTTTCCGATATCAAAGGGTGTGCAATGTATAATACAACTATTAGGGTATATCACCCTTAATTTGTACTTAGGTTTTAATGTACTTCTTTTGTAGATAAAAAAGATATCGTTCAAGGTTTCTTGTATTAGTCATAGCTTTGAGAATAATTTGACTATTTTTTTGACAGAATAATTTGACTAGTTAATTAGTTAGATCCTTATGAATTAGATCAAACATTTTTTTATATGAAATAGTTATACTAAGACAGAGTTGATCATCATGAGATTGGGATATCATCATGAGACAGAGTTCAAGAATACTCAATCCAATTACATAAGAAAAACCAAAGAGCTAATCAAGAACCATATCCATGATGATGATGATATAATAGTGACATTTATTTAAGGGTTAATTAAGTAAATAGTCCTCGTAAATATTCAGAATTTTGTTTTTAGTCCCTATAAAATAAAATCACACCTTTTAGACTCTATAAAATTTTCCATCATCATTTTTTGTCCCTATAAAATTTTTCCATCAGCATTTATAGTCTCTGTCATAAATTTTCATCAACACTTTTGGTCCCTAAAATGCTTAAGGAAAATGTGACAGGGACTAAAAAGTGTGATTTTATTTTGTATGGACTAAAATCAAGACTGTGAATATTTATAGGGACTAAAAACTTAATTAACCCTTTATTTAATAATTTTTACATTTGATTTAACTCACCCTTCCAAAAACTAAGTGGTTTTACTCATTATAAACTTAATTATTTCATATTTTATCTCTATATTATTTGGGACTTAGGCTTTTTTCGGAATGTACAACGGCCACGTATTCGATCACAGCTAATTTTGAATTTGACTTAAAAACTATGAAATCAGAATTCAATGAACGTGTTAGCTCAAAAACTCAAACTAATCTTAAATTTGACCATTTTGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTATTGTTGTGCTCACGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTTCAAACTCATTACAAAAGAAAGCATGGAACAAAACCATTTATCTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAAAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCATTCCCCACTTCCTTCTCTTGAAGGCTTTGAAGATGAGAAAGAATGCAGCAATACTGGATCTGATGATGACGAAGTTGCTCATGCATGATCATGATATGATTTTAAATTGAGGTTGCAGTCATAGTTACAAACTTGTATATTGTGATAAAATGCAACGGATTTGTGCGGTTGAAATTGAGGTTGCGATGTTGTTATAAAGACATCGTAATCTTCTATATTGCACTCGTAACTATTAGATGTAAAAGTTAATTACACTGATTAGTTAGTTACACTACTTAGTTATAACTAAGTAGTGTAACTGACCTATGTAACTAATTTTTATATCTAATAGTAATTACGATTGCGGACCGCAATTTAAAACCATTAATATCATGCCTAACATGCTATATATATAATACATCTATCATATACTATATAAAGAGTAGTAGTTTATTTAGTAATAACTAGAAATTGTAGCAAAGCTTGATCATTGTGTGCTTGTGCTCAGTAACAAAAAATTCTCAACAATTGCTAAGCCATGAAATTAATGGAGAATTGTTTGCTACTGGGCATTTGCTGATCAGTGATGATAAGCTAGCAGGGAATTAA

Protein sequence

>MS.gene034468.t1

MGLRDQCNVEDKNLYLQTPNFIEWLKPPNSSLSSSPSSPLTHQHKLSQETFQFLPISSGIKPYEDNHGMQNEDFEVKEEKVEHVTVTLHIGLPNIGGHESDEHDEKNKVFDCVKEEELKKNVHGFCFKEERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKVTKNSQQLLSHEINGELFATGHLLISDDKLAGN