Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009457.t1 | XP_003598272.2 | 97.2 | 746 | 19 | 2 | 1 | 746 | 1 | 744 | 0.00E+00 | 1140.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009457.t1 | Q9FMA3 | 68.1 | 752 | 209 | 7 | 1 | 745 | 1 | 728 | 2.9e-206 | 719.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009457.t1 | G7J0B8 | 97.2 | 746 | 19 | 2 | 1 | 746 | 1 | 744 | 0.0e+00 | 1140.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28100 | MS.gene009457 | PPI |
| MS.gene051559 | MS.gene009457 | PPI |
| MS.gene009457 | MS.gene030781 | PPI |
| MS.gene57427 | MS.gene009457 | PPI |
| MS.gene33044 | MS.gene009457 | PPI |
| MS.gene009457 | MS.gene52445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009457.t1 | MTR_3g009230 | 98.391 | 746 | 10 | 2 | 1 | 746 | 1 | 744 | 0.0 | 1508 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009457.t1 | AT5G56290 | 68.892 | 749 | 208 | 10 | 1 | 745 | 1 | 728 | 0.0 | 1027 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATGAACCTGAAATTT+AGG | 0.142349 | 3.2:+3337740 | None:intergenic |
| GAAATTTAGGGTCAGCATTT+TGG | 0.144545 | 3.2:+3337753 | None:intergenic |
| TCAAGCTCCCTGTGTCTTTC+AGG | 0.148049 | 3.2:+3338953 | None:intergenic |
| GGGGCAATCGTTCCGTATTT+TGG | 0.155248 | 3.2:+3333960 | None:intergenic |
| TAAGAGGTTGAGAGTAAAAT+TGG | 0.171322 | 3.2:+3340780 | None:intergenic |
| TGCCATGCATTCTCTGCTTT+TGG | 0.180617 | 3.2:+3330172 | None:intergenic |
| GCTGCTTTGAAGTATCTATT+TGG | 0.188621 | 3.2:-3333999 | MS.gene009457:CDS |
| GGGAAGGCTCTTCGGATAAT+TGG | 0.210063 | 3.2:-3335997 | MS.gene009457:CDS |
| TGTTCGTGCTTGGGCAAATA+TGG | 0.211852 | 3.2:-3330522 | MS.gene009457:CDS |
| AAATGCTGACCCTAAATTTC+AGG | 0.217692 | 3.2:-3337750 | MS.gene009457:intron |
| TTACCGAATTCAGTCAAAAT+AGG | 0.221138 | 3.2:-3338868 | MS.gene009457:CDS |
| CCTGCCCCTCTTCCAGTATT+GGG | 0.251133 | 3.2:-3339303 | MS.gene009457:CDS |
| AGCTTGTGATAGTCGTAATT+TGG | 0.252542 | 3.2:-3329969 | MS.gene009457:CDS |
| AATTCATTCGCCCACATTTC+AGG | 0.257706 | 3.2:+3336139 | None:intergenic |
| ACAGGGAGCTTGAAGATTAT+TGG | 0.274781 | 3.2:-3338943 | MS.gene009457:CDS |
| ATTGTAGAGGGAACTCCTTC+TGG | 0.277186 | 3.2:+3329939 | None:intergenic |
| AATGACTGGGCTGAGGAATT+TGG | 0.302290 | 3.2:-3336046 | MS.gene009457:CDS |
| TCCTGCCCCTCTTCCAGTAT+TGG | 0.302538 | 3.2:-3339304 | MS.gene009457:CDS |
| TGGTGAATTCTTAAATAATA+AGG | 0.327549 | 3.2:-3336674 | MS.gene009457:intron |
| CAACCTCTTACTCAGCTTCC+TGG | 0.333718 | 3.2:-3340767 | MS.gene009457:CDS |
| GCAGATGTTCACATAGTTCT+TGG | 0.334364 | 3.2:-3332318 | MS.gene009457:CDS |
| AACAGCATGGTGCAAATGGC+TGG | 0.335948 | 3.2:-3338802 | MS.gene009457:CDS |
| CAGATTGGTGAAGGAGCCTT+TGG | 0.341807 | 3.2:-3336019 | MS.gene009457:CDS |
| GCCCAAGCACGAACATAATT+AGG | 0.346674 | 3.2:+3330530 | None:intergenic |
| ATGGATGAACCTGAAATTTA+GGG | 0.349298 | 3.2:+3337741 | None:intergenic |
| GCCCTTTCCTGAACAGATCT+TGG | 0.357838 | 3.2:+3335238 | None:intergenic |
| ACGCGACCGTAGCAGCATTA+TGG | 0.369647 | 3.2:-3339253 | MS.gene009457:CDS |
| AGCTTCCAACATGTCATTCC+TGG | 0.376542 | 3.2:+3329988 | None:intergenic |
| AAGCATGAGCACCATGTATC+AGG | 0.376886 | 3.2:+3338903 | None:intergenic |
| TAGGTTTAGGTCTGCGGGTG+CGG | 0.380603 | 3.2:-3339799 | MS.gene009457:CDS |
| CATTACCCGCACCTGGAGAT+TGG | 0.384047 | 3.2:-3336741 | MS.gene009457:CDS |
| AAGAAGGCCAAGATCTGTTC+AGG | 0.389437 | 3.2:-3335245 | MS.gene009457:CDS |
| TTGGAGGTGCTTCTTGCTCT+TGG | 0.391890 | 3.2:-3334426 | MS.gene009457:CDS |
| CAGATGTTCACATAGTTCTT+GGG | 0.395395 | 3.2:-3332317 | MS.gene009457:CDS |
| GCCTAATTATGTTCGTGCTT+GGG | 0.397467 | 3.2:-3330531 | MS.gene009457:CDS |
| GGAAGGCTCTTCGGATAATT+GGG | 0.397858 | 3.2:-3335996 | MS.gene009457:CDS |
| GTCAAGAAATGAGTGCAAAA+AGG | 0.399032 | 3.2:+3339353 | None:intergenic |
| GATGATGAAGCAGAAGGGTC+AGG | 0.405325 | 3.2:+3340991 | None:intergenic |
| CCATCAGATAAACCCAATAC+TGG | 0.406385 | 3.2:+3339291 | None:intergenic |
| AGCCTAATTATGTTCGTGCT+TGG | 0.409800 | 3.2:-3330532 | MS.gene009457:CDS |
| TTTAGGTCTGCGGGTGCGGG+TGG | 0.417292 | 3.2:-3339795 | MS.gene009457:CDS |
| TACCGAATTCAGTCAAAATA+GGG | 0.427648 | 3.2:-3338867 | MS.gene009457:CDS |
| AGCCTTTGGGGAAGGCTCTT+CGG | 0.429856 | 3.2:-3336005 | MS.gene009457:CDS |
| CAAAGTTGCATGTTAATGAC+TGG | 0.437634 | 3.2:-3336060 | MS.gene009457:CDS |
| AGGTTTAGGTCTGCGGGTGC+GGG | 0.446010 | 3.2:-3339798 | MS.gene009457:CDS |
| GATAAACCCAATACTGGAAG+AGG | 0.446588 | 3.2:+3339297 | None:intergenic |
| TGCAATAGCGGCTTATCAAC+AGG | 0.447194 | 3.2:-3332160 | MS.gene009457:intron |
| TTAGGTCTGCGGGTGCGGGT+GGG | 0.448596 | 3.2:-3339794 | MS.gene009457:CDS |
| CGGGTGGGTTTGACGAAACG+TGG | 0.454164 | 3.2:-3339779 | MS.gene009457:CDS |
| GAGGAATTTGGTCAGCAGAT+TGG | 0.455946 | 3.2:-3336034 | MS.gene009457:CDS |
| GTTCGTGCTTGGGCAAATAT+GGG | 0.457058 | 3.2:-3330521 | MS.gene009457:CDS |
| AGCCACAAGATTACTCTCTC+TGG | 0.457405 | 3.2:-3332227 | MS.gene009457:CDS |
| AGATTGGTGAAGGAGCCTTT+GGG | 0.458135 | 3.2:-3336018 | MS.gene009457:CDS |
| GAACCAGGAAGCTGAGTAAG+AGG | 0.458161 | 3.2:+3340764 | None:intergenic |
| TATTCTGTTGCCCAATCTCC+AGG | 0.464052 | 3.2:+3336730 | None:intergenic |
| GGATTTGGATGACCAACATA+AGG | 0.464674 | 3.2:+3335273 | None:intergenic |
| AGAAAATGACGATGATCAAC+AGG | 0.466750 | 3.2:-3335124 | MS.gene009457:intron |
| CCAGTATTGGGTTTATCTGA+TGG | 0.468008 | 3.2:-3339291 | MS.gene009457:CDS |
| GACAGCAATGTCCGTGGCAA+GGG | 0.468603 | 3.2:-3338983 | MS.gene009457:CDS |
| ATTACCCGCACCTGGAGATT+GGG | 0.468992 | 3.2:-3336740 | MS.gene009457:CDS |
| TCCGAGTAGTCTCCATCCTT+CGG | 0.469842 | 3.2:+3335158 | None:intergenic |
| AGAAGCACCTCCAAGTTTGT+TGG | 0.472918 | 3.2:+3334435 | None:intergenic |
| GCCAAGATCTGTTCAGGAAA+GGG | 0.474799 | 3.2:-3335239 | MS.gene009457:CDS |
| TGAATTTCCTTACTTGGGCA+TGG | 0.479452 | 3.2:+3339193 | None:intergenic |
| CCCAATACTGGAAGAGGGGC+AGG | 0.480583 | 3.2:+3339303 | None:intergenic |
| ACCCTGAAAATTCCGAAGGA+TGG | 0.481367 | 3.2:-3335170 | MS.gene009457:CDS |
| CTACGGAATCACCCAAAATA+CGG | 0.483449 | 3.2:-3333972 | MS.gene009457:CDS |
| ATGTGAACATCTGCATCATC+AGG | 0.485344 | 3.2:+3332327 | None:intergenic |
| CACCATGATTATACTGCTGC+TGG | 0.487665 | 3.2:+3336707 | None:intergenic |
| AGCAGCGGTCAGATAGTTCA+AGG | 0.500097 | 3.2:-3335323 | MS.gene009457:CDS |
| AAGAGGTTGAGAGTAAAATT+GGG | 0.500352 | 3.2:+3340781 | None:intergenic |
| AACGAAGTAGCCCATGCATC+GGG | 0.501913 | 3.2:+3338830 | None:intergenic |
| TACTCTCTCTGGAACAAGCT+TGG | 0.503008 | 3.2:-3332216 | MS.gene009457:CDS |
| GAGTCTGCATTACCCGCACC+TGG | 0.505998 | 3.2:-3336748 | MS.gene009457:CDS |
| ATTCTCTTGATAAGTTGTAC+AGG | 0.510273 | 3.2:+3332292 | None:intergenic |
| GCGATGCGTGATCTTATAAC+GGG | 0.510381 | 3.2:-3341027 | MS.gene009457:CDS |
| AATCAACTCCGGCTCTATGA+TGG | 0.511237 | 3.2:-3339735 | MS.gene009457:CDS |
| GAGCAACAGCATGGTGCAAA+TGG | 0.511854 | 3.2:-3338806 | MS.gene009457:CDS |
| CTTTGAAGTATCTATTTGGA+TGG | 0.512648 | 3.2:-3333995 | MS.gene009457:CDS |
| AGTATAATCATGGTGATGCA+TGG | 0.513119 | 3.2:-3336699 | MS.gene009457:CDS |
| TTGAATAGGTTTAGGTCTGC+GGG | 0.514662 | 3.2:-3339804 | MS.gene009457:CDS |
| GGAAGAGGGGCAGGATGAAA+AGG | 0.514676 | 3.2:+3339312 | None:intergenic |
| TGAGAATTAGCATCGAGAAA+AGG | 0.514885 | 3.2:+3340728 | None:intergenic |
| TCATCTTTGATACAAATTGA+AGG | 0.516310 | 3.2:+3336809 | None:intergenic |
| ACCGTAGCAGCATTATGGCC+AGG | 0.516363 | 3.2:-3339248 | MS.gene009457:CDS |
| GGCGATGCGTGATCTTATAA+CGG | 0.516570 | 3.2:-3341028 | MS.gene009457:CDS |
| TCAGATTTAAATCCTTATGT+TGG | 0.516785 | 3.2:-3335285 | MS.gene009457:CDS |
| TGAACTATCTGACCGCTGCT+TGG | 0.519477 | 3.2:+3335326 | None:intergenic |
| GCCTGGCCATAATGCTGCTA+CGG | 0.522236 | 3.2:+3339247 | None:intergenic |
| CTCTTCGGATAATTGGGCTC+AGG | 0.525195 | 3.2:-3335990 | MS.gene009457:CDS |
| AGTATCTATTTGGATGGCTA+CGG | 0.525996 | 3.2:-3333989 | MS.gene009457:CDS |
| TTTGAATAGGTTTAGGTCTG+CGG | 0.526663 | 3.2:-3339805 | MS.gene009457:CDS |
| TTGAAGGCTTATCCTAGAGC+TGG | 0.529807 | 3.2:-3336163 | MS.gene009457:intron |
| GTCCCCTACCATCATAGAGC+CGG | 0.530612 | 3.2:+3339727 | None:intergenic |
| GAAGGAGTAGATGTTGATGT+AGG | 0.531142 | 3.2:+3340809 | None:intergenic |
| GATATGATAATCCCGATGCA+TGG | 0.532117 | 3.2:-3338841 | MS.gene009457:CDS |
| ACAGCATGGTGCAAATGGCT+GGG | 0.532223 | 3.2:-3338801 | MS.gene009457:CDS |
| CTTGGTGTCAGTCATACAAA+TGG | 0.532297 | 3.2:-3334408 | MS.gene009457:intron |
| ACTCCGGCTCTATGATGGTA+GGG | 0.532880 | 3.2:-3339730 | MS.gene009457:CDS |
| GGCTGATCCAACAAACTTGG+AGG | 0.533543 | 3.2:-3334442 | MS.gene009457:CDS |
| GTGCTCATGCTTCAGACGGA+TGG | 0.534556 | 3.2:-3338892 | MS.gene009457:CDS |
| AGAGGCTGATCCAACAAACT+TGG | 0.535292 | 3.2:-3334445 | MS.gene009457:CDS |
| TACCAGCAGCAGTATAATCA+TGG | 0.535305 | 3.2:-3336709 | MS.gene009457:CDS |
| GGTGAAGGAGCCTTTGGGGA+AGG | 0.535807 | 3.2:-3336013 | MS.gene009457:CDS |
| TGCCTGTTCAAAAGCTGCAA+TGG | 0.538654 | 3.2:+3332260 | None:intergenic |
| TTTATCTGCAAAGAGATGCC+TGG | 0.541623 | 3.2:+3339230 | None:intergenic |
| TTTGGTCAGCAGATTGGTGA+AGG | 0.542117 | 3.2:-3336028 | MS.gene009457:CDS |
| CACATTTCAGGTCCAGCTCT+AGG | 0.544577 | 3.2:+3336151 | None:intergenic |
| TTCCAGAGAGAGTAATCTTG+TGG | 0.546481 | 3.2:+3332225 | None:intergenic |
| TACAAAGAATCAGACATCTC+AGG | 0.547263 | 3.2:+3333936 | None:intergenic |
| TGATTAATAGGAGAGGTTGA+AGG | 0.548720 | 3.2:-3340837 | MS.gene009457:intron |
| ATCCAAAAGCAGAGAATGCA+TGG | 0.548861 | 3.2:-3330174 | MS.gene009457:CDS |
| CATCCAAATCCATTAAAAGA+AGG | 0.549648 | 3.2:-3335261 | MS.gene009457:CDS |
| GGCCAAGATCTGTTCAGGAA+AGG | 0.557037 | 3.2:-3335240 | MS.gene009457:CDS |
| TCTCAAGGCAACCTGATACA+TGG | 0.557574 | 3.2:-3338914 | MS.gene009457:CDS |
| GAGGGAACTCCTTCTGGAGA+AGG | 0.560805 | 3.2:+3329945 | None:intergenic |
| GTTGCCCAATCTCCAGGTGC+GGG | 0.560914 | 3.2:+3336736 | None:intergenic |
| TCCCTGTGTCTTTCAGGCAT+AGG | 0.561458 | 3.2:+3338959 | None:intergenic |
| AGCAAGTTGCTGCCAAGCAG+CGG | 0.561910 | 3.2:-3335338 | MS.gene009457:CDS |
| ATATGATAATCCCGATGCAT+GGG | 0.561935 | 3.2:-3338840 | MS.gene009457:CDS |
| TGACAGCAATGTCCGTGGCA+AGG | 0.567180 | 3.2:-3338984 | MS.gene009457:CDS |
| AAACGAAGTAGCCCATGCAT+CGG | 0.570079 | 3.2:+3338829 | None:intergenic |
| TCCGAAGGATGGAGACTACT+CGG | 0.572229 | 3.2:-3335159 | MS.gene009457:CDS |
| CAGGCATAGGTCCCTTGCCA+CGG | 0.575096 | 3.2:+3338972 | None:intergenic |
| TCTTCCTCTCAAAACCCTCT+CGG | 0.575386 | 3.2:-3340970 | MS.gene009457:CDS |
| TAATTTGGACCTTCTCCAGA+AGG | 0.577440 | 3.2:-3329954 | MS.gene009457:CDS |
| GAGTAAAATTGGGATGCAGA+AGG | 0.577812 | 3.2:+3340791 | None:intergenic |
| TGTTGCCCAATCTCCAGGTG+CGG | 0.578121 | 3.2:+3336735 | None:intergenic |
| GAGGAAGATGATGAAGCAGA+AGG | 0.578801 | 3.2:+3340985 | None:intergenic |
| CTTCATCAACCCACACTGGA+TGG | 0.578974 | 3.2:-3339690 | MS.gene009457:intron |
| AGCGATGATGCGTGCACAAG+AGG | 0.579422 | 3.2:-3334463 | MS.gene009457:CDS |
| AAGGTAGATAGAACTCTTTG+CGG | 0.580763 | 3.2:+3339372 | None:intergenic |
| TCATTTCTTGACAGCAGTCG+CGG | 0.584376 | 3.2:-3339342 | MS.gene009457:CDS |
| ATGATGAAGCAGAAGGGTCA+GGG | 0.585681 | 3.2:+3340992 | None:intergenic |
| TAGCACAAAACTTATTGTAG+AGG | 0.590636 | 3.2:+3329926 | None:intergenic |
| AGCACAAAACTTATTGTAGA+GGG | 0.592967 | 3.2:+3329927 | None:intergenic |
| AACTCCGGCTCTATGATGGT+AGG | 0.593048 | 3.2:-3339731 | MS.gene009457:CDS |
| CTAGAGCTGGACCTGAAATG+TGG | 0.594905 | 3.2:-3336150 | MS.gene009457:CDS |
| AGGAAGATGATGAAGCAGAA+GGG | 0.596421 | 3.2:+3340986 | None:intergenic |
| AGATGTTCACATAGTTCTTG+GGG | 0.599275 | 3.2:-3332316 | MS.gene009457:CDS |
| TGCTTCCAGGAATGACATGT+TGG | 0.600419 | 3.2:-3329993 | MS.gene009457:CDS |
| TTGAGAATTCATCAACCCAC+TGG | 0.600819 | 3.2:+3336080 | None:intergenic |
| ATAAACCCAATACTGGAAGA+GGG | 0.600904 | 3.2:+3339298 | None:intergenic |
| TCTCTCGCTAATGCTCTCCT+CGG | 0.601744 | 3.2:-3340946 | MS.gene009457:CDS |
| TCTCACATGTTCAAATTCAG+AGG | 0.601812 | 3.2:+3338778 | None:intergenic |
| CTCCGGCTCTATGATGGTAG+GGG | 0.603633 | 3.2:-3339729 | MS.gene009457:CDS |
| GACCTATGCCTGAAAGACAC+AGG | 0.605333 | 3.2:-3338961 | MS.gene009457:CDS |
| AATCATGGTGATGCATGGGC+TGG | 0.607937 | 3.2:-3336694 | MS.gene009457:CDS |
| GGGTATCAGTTATGCAAACC+AGG | 0.609130 | 3.2:-3330501 | MS.gene009457:intron |
| GCAACTGAAAGACAACAAAA+CGG | 0.609904 | 3.2:-3336115 | MS.gene009457:CDS |
| AGTATTTGAGAATTTCGTTG+AGG | 0.614989 | 3.2:-3330150 | MS.gene009457:intron |
| ACTTCGTTTGAGCAACAGCA+TGG | 0.615021 | 3.2:-3338815 | MS.gene009457:CDS |
| GTGGGTTGATGAAGCTGTGG+TGG | 0.616757 | 3.2:+3339699 | None:intergenic |
| ATCCGAAGAGCCTTCCCCAA+AGG | 0.620364 | 3.2:+3336003 | None:intergenic |
| AACGTGATGGAAATCAACTC+CGG | 0.620997 | 3.2:-3339746 | MS.gene009457:CDS |
| AAAGAATCAGACATCTCAGG+TGG | 0.623681 | 3.2:+3333939 | None:intergenic |
| ACGGAGCAGCTGATGACCAG+TGG | 0.624305 | 3.2:-3336096 | MS.gene009457:CDS |
| TAGAGCTGGACCTGAAATGT+GGG | 0.626116 | 3.2:-3336149 | MS.gene009457:CDS |
| CATTAGCGAGAGAACCGAGA+GGG | 0.626860 | 3.2:+3340956 | None:intergenic |
| CATGGTGCTCATGCTTCAGA+CGG | 0.626917 | 3.2:-3338896 | MS.gene009457:CDS |
| GCAGCGGTCAGATAGTTCAA+GGG | 0.629171 | 3.2:-3335322 | MS.gene009457:CDS |
| GTATAATCATGGTGATGCAT+GGG | 0.633154 | 3.2:-3336698 | MS.gene009457:CDS |
| AGAATCAGACATCTCAGGTG+GGG | 0.634275 | 3.2:+3333941 | None:intergenic |
| GGTTTATCGAATTCAGAACC+AGG | 0.637209 | 3.2:+3340749 | None:intergenic |
| AAAGTTGCATGTTAATGACT+GGG | 0.637762 | 3.2:-3336059 | MS.gene009457:CDS |
| TCGAAATTACCATCCAGTGT+GGG | 0.639408 | 3.2:+3339681 | None:intergenic |
| AAGAATCAGACATCTCAGGT+GGG | 0.639797 | 3.2:+3333940 | None:intergenic |
| GATTATTGGAATGAGTCTCA+AGG | 0.639912 | 3.2:-3338929 | MS.gene009457:CDS |
| GATTGGTGAAGGAGCCTTTG+GGG | 0.640785 | 3.2:-3336017 | MS.gene009457:CDS |
| ACAGCTTCATCAACCCACAC+TGG | 0.643331 | 3.2:-3339694 | MS.gene009457:CDS |
| TTCGAAATTACCATCCAGTG+TGG | 0.643658 | 3.2:+3339680 | None:intergenic |
| CAGCGGTCAGATAGTTCAAG+GGG | 0.645860 | 3.2:-3335321 | MS.gene009457:CDS |
| ATTGCTGTCAATATCTAGAG+AGG | 0.646477 | 3.2:+3338997 | None:intergenic |
| TTTCTTGACAGCAGTCGCGG+TGG | 0.646862 | 3.2:-3339339 | MS.gene009457:CDS |
| TCAAAGTGCTGATGCAATAG+CGG | 0.646885 | 3.2:-3332172 | MS.gene009457:CDS |
| TCGTATGCTTGCCAATACAT+TGG | 0.647154 | 3.2:-3337777 | MS.gene009457:CDS |
| CGGAGCAGCTGATGACCAGT+GGG | 0.647621 | 3.2:-3336095 | MS.gene009457:CDS |
| TGGGATGAGATACAACGTGA+TGG | 0.649486 | 3.2:-3339759 | MS.gene009457:CDS |
| AGTGTGGGTTGATGAAGCTG+TGG | 0.654249 | 3.2:+3339696 | None:intergenic |
| GCATGTTAATGACTGGGCTG+AGG | 0.661649 | 3.2:-3336053 | MS.gene009457:CDS |
| TAAACCCAATACTGGAAGAG+GGG | 0.662913 | 3.2:+3339299 | None:intergenic |
| ACCTATGCCTGAAAGACACA+GGG | 0.669282 | 3.2:-3338960 | MS.gene009457:CDS |
| TTTGTATCAAAGATGAGCCG+TGG | 0.670028 | 3.2:-3336802 | MS.gene009457:CDS |
| GATATTGACAGCAATGTCCG+TGG | 0.674753 | 3.2:-3338989 | MS.gene009457:CDS |
| GGGTGGGTTTGACGAAACGT+GGG | 0.688870 | 3.2:-3339778 | MS.gene009457:CDS |
| TCATCAGTAGATCAAATGCG+AGG | 0.708481 | 3.2:-3337839 | MS.gene009457:CDS |
| CATCGATAATCAACTCACCA+CGG | 0.709656 | 3.2:+3336785 | None:intergenic |
| GCATTAGCGAGAGAACCGAG+AGG | 0.740575 | 3.2:+3340955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 3329937 | 3341052 | 3329937 | ID=MS.gene009457 |
| chr3.2 | mRNA | 3329937 | 3341052 | 3329937 | ID=MS.gene009457.t1;Parent=MS.gene009457 |
| chr3.2 | exon | 3340927 | 3341052 | 3340927 | ID=MS.gene009457.t1.exon1;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3340927 | 3341052 | 3340927 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3340727 | 3340849 | 3340727 | ID=MS.gene009457.t1.exon2;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3340727 | 3340849 | 3340727 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3339691 | 3339838 | 3339691 | ID=MS.gene009457.t1.exon3;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3339691 | 3339838 | 3339691 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3339206 | 3339399 | 3339206 | ID=MS.gene009457.t1.exon4;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3339206 | 3339399 | 3339206 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3338784 | 3339035 | 3338784 | ID=MS.gene009457.t1.exon5;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3338784 | 3339035 | 3338784 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3337751 | 3337870 | 3337751 | ID=MS.gene009457.t1.exon6;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3337751 | 3337870 | 3337751 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3336675 | 3336842 | 3336675 | ID=MS.gene009457.t1.exon7;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3336675 | 3336842 | 3336675 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3335980 | 3336179 | 3335980 | ID=MS.gene009457.t1.exon8;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3335980 | 3336179 | 3335980 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3335125 | 3335371 | 3335125 | ID=MS.gene009457.t1.exon9;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3335125 | 3335371 | 3335125 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3334409 | 3334493 | 3334409 | ID=MS.gene009457.t1.exon10;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3334409 | 3334493 | 3334409 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3333926 | 3334035 | 3333926 | ID=MS.gene009457.t1.exon11;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3333926 | 3334035 | 3333926 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3332161 | 3332385 | 3332161 | ID=MS.gene009457.t1.exon12;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3332161 | 3332385 | 3332161 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3330502 | 3330567 | 3330502 | ID=MS.gene009457.t1.exon13;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3330502 | 3330567 | 3330502 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3330151 | 3330245 | 3330151 | ID=MS.gene009457.t1.exon14;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3330151 | 3330245 | 3330151 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| chr3.2 | exon | 3329937 | 3330018 | 3329937 | ID=MS.gene009457.t1.exon15;Parent=MS.gene009457.t1 |
| chr3.2 | CDS | 3329937 | 3330018 | 3329937 | ID=cds.MS.gene009457.t1;Parent=MS.gene009457.t1 |
| Gene Sequence |
| Protein sequence |
