Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28100.t1 | XP_013446835.1 | 99.2 | 647 | 5 | 0 | 1 | 647 | 43 | 689 | 0.00E+00 | 1317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28100.t1 | O65201 | 86.8 | 646 | 84 | 1 | 2 | 646 | 47 | 692 | 0.0e+00 | 1169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28100.t1 | A0A072TTY6 | 99.2 | 647 | 5 | 0 | 1 | 647 | 43 | 689 | 0.0e+00 | 1317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28100.t1 | MTR_8g090375 | 99.227 | 647 | 5 | 0 | 1 | 647 | 43 | 689 | 0.0 | 1345 |
| MS.gene28100.t1 | MTR_4g079290 | 37.815 | 595 | 331 | 12 | 49 | 631 | 97 | 664 | 2.86e-119 | 370 |
| MS.gene28100.t1 | MTR_5g012920 | 35.305 | 541 | 317 | 12 | 108 | 635 | 103 | 623 | 1.13e-87 | 287 |
| MS.gene28100.t1 | MTR_4g100640 | 35.250 | 539 | 320 | 13 | 108 | 635 | 103 | 623 | 9.44e-87 | 285 |
| MS.gene28100.t1 | MTR_4g100640 | 36.902 | 439 | 252 | 10 | 116 | 547 | 114 | 534 | 2.44e-74 | 248 |
| MS.gene28100.t1 | MTR_4g091440 | 83.529 | 85 | 9 | 1 | 555 | 639 | 11 | 90 | 5.28e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28100.t1 | AT5G65110 | 86.842 | 646 | 84 | 1 | 2 | 646 | 47 | 692 | 0.0 | 1196 |
| MS.gene28100.t1 | AT5G65110 | 86.723 | 595 | 78 | 1 | 2 | 595 | 47 | 641 | 0.0 | 1101 |
| MS.gene28100.t1 | AT1G06290 | 37.099 | 593 | 334 | 12 | 51 | 631 | 98 | 663 | 1.98e-113 | 355 |
| MS.gene28100.t1 | AT1G06310 | 36.303 | 595 | 340 | 12 | 49 | 631 | 96 | 663 | 3.72e-111 | 349 |
| MS.gene28100.t1 | AT2G35690 | 34.280 | 528 | 321 | 10 | 116 | 635 | 114 | 623 | 1.27e-80 | 268 |
| MS.gene28100.t1 | AT4G16760 | 34.137 | 539 | 326 | 12 | 108 | 635 | 90 | 610 | 2.52e-80 | 267 |
| MS.gene28100.t1 | AT4G16760 | 34.137 | 539 | 326 | 12 | 108 | 635 | 103 | 623 | 3.80e-80 | 267 |
Find 169 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCATCCAATTGAAATTT+AGG | 0.172021 | 4.4:+10176488 | None:intergenic |
| TTTATGCTCTTGATCGAATA+TGG | 0.214273 | 4.4:-10176068 | MS.gene28100:CDS |
| GGGTGGTTCTGTAATCAATT+TGG | 0.224713 | 4.4:-10179312 | MS.gene28100:CDS |
| CAATTCTCGGTGATTATCTT+TGG | 0.226333 | 4.4:+10179573 | None:intergenic |
| ATGCTTTCATTGTTCCAATA+AGG | 0.244174 | 4.4:-10177916 | MS.gene28100:CDS |
| TCTCTACTTCGTCAGCAATT+TGG | 0.245338 | 4.4:-10177599 | MS.gene28100:CDS |
| GTTTATTCTATGCAGTCTTT+GGG | 0.259624 | 4.4:-10179333 | MS.gene28100:intron |
| CCTTCCCACCTAGCAGTAAC+TGG | 0.283092 | 4.4:+10176530 | None:intergenic |
| TGGGTCTTCATATCCCTTAT+TGG | 0.284324 | 4.4:+10177902 | None:intergenic |
| CATCTCCAAAACGGTTTAGA+AGG | 0.308919 | 4.4:+10177771 | None:intergenic |
| TGCTTTCATTGTTCCAATAA+GGG | 0.312257 | 4.4:-10177915 | MS.gene28100:CDS |
| CACCTAGCAGTAACTGGATT+TGG | 0.315018 | 4.4:+10176536 | None:intergenic |
| TTAGATATTCTGACAGTTTG+TGG | 0.323950 | 4.4:+10175385 | None:intergenic |
| CTATGATGGTATTGATAACT+TGG | 0.333947 | 4.4:-10179264 | MS.gene28100:CDS |
| GACAACCTTCTAAACCGTTT+TGG | 0.334424 | 4.4:-10177776 | MS.gene28100:CDS |
| TTTATGTACCTTGGCTTTGT+TGG | 0.336573 | 4.4:+10176005 | None:intergenic |
| TTATGTACCTTGGCTTTGTT+GGG | 0.344008 | 4.4:+10176006 | None:intergenic |
| TATCTTTGGAAATTTCAATA+GGG | 0.356130 | 4.4:+10179587 | None:intergenic |
| GGTGGTTCTGTAATCAATTT+GGG | 0.359274 | 4.4:-10179311 | MS.gene28100:CDS |
| TCAAAATGGGTGTTCAATAT+AGG | 0.359325 | 4.4:-10179423 | MS.gene28100:intron |
| TGTAAGCGTCCTCAAGGTTT+CGG | 0.365459 | 4.4:-10177642 | MS.gene28100:CDS |
| AAGACCCATCAAACACTTCC+TGG | 0.370749 | 4.4:-10177887 | MS.gene28100:CDS |
| ATTGTGTATGAATCAGCTTT+TGG | 0.372478 | 4.4:-10179554 | MS.gene28100:CDS |
| TTATCTTTGGAAATTTCAAT+AGG | 0.377781 | 4.4:+10179586 | None:intergenic |
| TTGGCTCTTGTTAGAGAAGC+TGG | 0.387447 | 4.4:-10179535 | MS.gene28100:CDS |
| CAACACAGTTCTTCTTCAAC+AGG | 0.389995 | 4.4:-10177252 | MS.gene28100:intron |
| AGCGGTTCGGTGCAACTCTC+GGG | 0.390305 | 4.4:-10177703 | MS.gene28100:CDS |
| TCCCTCCTTGGAACTTTCTC+TGG | 0.394208 | 4.4:+10176615 | None:intergenic |
| GCAGCTTGAGCGCTTGGATC+AGG | 0.395154 | 4.4:+10176111 | None:intergenic |
| GCTGATTCATACACAATTCT+CGG | 0.398942 | 4.4:+10179560 | None:intergenic |
| TTCAGAGCAGCTTGAGCGCT+TGG | 0.401209 | 4.4:+10176105 | None:intergenic |
| CATTTGATAGCACCATCATT+TGG | 0.402058 | 4.4:+10178040 | None:intergenic |
| ACGGGATCCTAAATTTCAAT+TGG | 0.403971 | 4.4:-10176495 | MS.gene28100:CDS |
| CTCTCAGTACACACAATTTG+TGG | 0.416549 | 4.4:-10175265 | MS.gene28100:CDS |
| TCAAAACCACTCGGGGACTT+TGG | 0.417831 | 4.4:-10176317 | MS.gene28100:CDS |
| CCTTTGCAATATTCCTCACT+TGG | 0.418205 | 4.4:+10175358 | None:intergenic |
| TGTTGTCTCCTTCAAATGTC+TGG | 0.418618 | 4.4:+10177270 | None:intergenic |
| GGCCTCAATGGTGTTGATAA+TGG | 0.420530 | 4.4:-10177833 | MS.gene28100:CDS |
| CAATTCCAGGAAGTGTTTGA+TGG | 0.423634 | 4.4:+10177882 | None:intergenic |
| CTGGTATTGTTTCAAAAGAT+CGG | 0.429824 | 4.4:+10176634 | None:intergenic |
| ATTATTGATACTCCAAATGA+TGG | 0.432472 | 4.4:-10178052 | MS.gene28100:CDS |
| CAATCATGTATCTCAATTCC+AGG | 0.438247 | 4.4:+10177869 | None:intergenic |
| GAAATTTAGGATCCCGTAGA+TGG | 0.439969 | 4.4:+10176501 | None:intergenic |
| GCTCCTGATTGCTTGGCAAT+AGG | 0.442770 | 4.4:+10175291 | None:intergenic |
| ACAGATGCTGAGTGACTTTG+CGG | 0.444457 | 4.4:+10177367 | None:intergenic |
| TTTGGAGATGTTTCTCGTGA+TGG | 0.445538 | 4.4:-10177758 | MS.gene28100:CDS |
| TATGTCGCTTGGAATCAAAA+TGG | 0.447452 | 4.4:-10179437 | MS.gene28100:CDS |
| GCACCTATTGCCAAGCAATC+AGG | 0.452909 | 4.4:-10175294 | MS.gene28100:CDS |
| AAGCGGTTCGGTGCAACTCT+CGG | 0.453349 | 4.4:-10177704 | MS.gene28100:CDS |
| TCTCAGTACACACAATTTGT+GGG | 0.455819 | 4.4:-10175264 | MS.gene28100:CDS |
| GGTGCCCTTGTTACATGATC+GGG | 0.458693 | 4.4:+10175312 | None:intergenic |
| CCTTCGGTTAATAAGCGGTT+CGG | 0.458831 | 4.4:-10177716 | MS.gene28100:CDS |
| ATGGCTATGCTGCTGTAAAT+CGG | 0.459547 | 4.4:-10177325 | MS.gene28100:CDS |
| TGCAAAAGGAGTTTCTGATA+TGG | 0.461080 | 4.4:-10177945 | MS.gene28100:CDS |
| GCAACTCTCGGGGAACTTGT+TGG | 0.464445 | 4.4:-10177692 | MS.gene28100:CDS |
| CGGGGAACTTGTTGGTGGTA+GGG | 0.466679 | 4.4:-10177684 | MS.gene28100:CDS |
| TAGTCGAGAATCGTTACTTC+GGG | 0.467616 | 4.4:+10177563 | None:intergenic |
| TGCTCTCTCGGCAGGTCTGA+AGG | 0.474202 | 4.4:-10177408 | MS.gene28100:CDS |
| TATGCTGCTGTAAATCGGTT+TGG | 0.475927 | 4.4:-10177320 | MS.gene28100:CDS |
| ATAAACAGGTTCAAATGTGC+AGG | 0.483681 | 4.4:-10178119 | MS.gene28100:intron |
| AGCATAGCCATGGCCTCCAC+AGG | 0.485422 | 4.4:+10177337 | None:intergenic |
| GATGTCCATGCTCTCTCGGC+AGG | 0.488038 | 4.4:-10177416 | MS.gene28100:CDS |
| TTACCTAATTATGATGCAAA+AGG | 0.492396 | 4.4:-10177959 | MS.gene28100:CDS |
| TTGGAGATGTTTCTCGTGAT+GGG | 0.492414 | 4.4:-10177757 | MS.gene28100:CDS |
| GTACACAAGTACGCTTCCTT+CGG | 0.492471 | 4.4:-10177732 | MS.gene28100:CDS |
| CATGATTGTGGTCATAAAGT+TGG | 0.493032 | 4.4:-10177854 | MS.gene28100:CDS |
| TCGGGGAACTTGTTGGTGGT+AGG | 0.493211 | 4.4:-10177685 | MS.gene28100:CDS |
| ATCTTTGGAAATTTCAATAG+GGG | 0.494569 | 4.4:+10179588 | None:intergenic |
| AAAATAGCAAAATACTTAGC+AGG | 0.495694 | 4.4:+10179481 | None:intergenic |
| GGTCATAAAGTTGGCCTCAA+TGG | 0.500739 | 4.4:-10177845 | MS.gene28100:CDS |
| TCCTCTCATGTAACCTGAGA+GGG | 0.502013 | 4.4:+10179672 | None:intergenic |
| GGGAAGGTGAAGACCATCTA+CGG | 0.502020 | 4.4:-10176514 | MS.gene28100:CDS |
| GTTACTTCGGGTTGGTCTCG+AGG | 0.502846 | 4.4:+10177575 | None:intergenic |
| TCAATAGGGGTTAGAAGATG+TGG | 0.503081 | 4.4:+10179601 | None:intergenic |
| TAAGCTTATGCTGATGAGAC+TGG | 0.505882 | 4.4:+10177540 | None:intergenic |
| CTACCGTAATGTTGATTATG+TGG | 0.509887 | 4.4:-10176031 | MS.gene28100:CDS |
| TGCAGATGTCCATGCTCTCT+CGG | 0.513801 | 4.4:-10177420 | MS.gene28100:CDS |
| AGAATATCTGATGGCAATAG+TGG | 0.520586 | 4.4:+10177619 | None:intergenic |
| AGAGTAAGCTCCTGATTGCT+TGG | 0.521456 | 4.4:+10175284 | None:intergenic |
| CATAAGGACAAGTACTATGA+TGG | 0.522129 | 4.4:-10179278 | MS.gene28100:CDS |
| GCATAAGCTTATGCCCATGC+TGG | 0.522352 | 4.4:-10177528 | MS.gene28100:CDS |
| GAACTTGTTGGTGGTAGGGT+AGG | 0.522927 | 4.4:-10177680 | MS.gene28100:CDS |
| GTGGACACAAATTCCCTCTC+AGG | 0.525692 | 4.4:-10179685 | MS.gene28100:CDS |
| CGAAAGCACTCAAAACCACT+CGG | 0.525809 | 4.4:-10176326 | MS.gene28100:CDS |
| TTTGGGAACACAGAAACATA+AGG | 0.529122 | 4.4:-10179294 | MS.gene28100:CDS |
| CACTCGGGGACTTTGGTGCA+TGG | 0.531305 | 4.4:-10176310 | MS.gene28100:CDS |
| TCAGACCTGCCGAGAGAGCA+TGG | 0.532410 | 4.4:+10177411 | None:intergenic |
| AGGGAAGCCTGTGGAGGCCA+TGG | 0.532509 | 4.4:-10177344 | MS.gene28100:CDS |
| CAAAGTCACTCAGCATCTGT+AGG | 0.533032 | 4.4:-10177364 | MS.gene28100:CDS |
| TGCATAAGTTGAAGCCAGCA+TGG | 0.533986 | 4.4:+10177514 | None:intergenic |
| TTCTTCTGTAAGCGTCCTCA+AGG | 0.534074 | 4.4:-10177648 | MS.gene28100:CDS |
| AATTCCAGGAAGTGTTTGAT+GGG | 0.535427 | 4.4:+10177883 | None:intergenic |
| GAGCCACATAATCAACATTA+CGG | 0.536866 | 4.4:+10176028 | None:intergenic |
| AGGTGCCCTTGTTACATGAT+CGG | 0.538269 | 4.4:+10175311 | None:intergenic |
| CCAGTTACTGCTAGGTGGGA+AGG | 0.538816 | 4.4:-10176530 | MS.gene28100:CDS |
| CTGTGACAGATAAGTACTCA+TGG | 0.539434 | 4.4:+10176559 | None:intergenic |
| CAAAGGTGGCAAGAGTTTGA+AGG | 0.542484 | 4.4:+10178095 | None:intergenic |
| TCACTGCTAAAGTCCCTCCT+TGG | 0.543944 | 4.4:+10176603 | None:intergenic |
| GCAAAAGGAGTTTCTGATAT+GGG | 0.548158 | 4.4:-10177944 | MS.gene28100:CDS |
| CACGAGAAACATCTCCAAAA+CGG | 0.548477 | 4.4:+10177762 | None:intergenic |
| ATTCTATGCAGTCTTTGGGG+TGG | 0.550468 | 4.4:-10179329 | MS.gene28100:intron |
| ATAATAAATTCATCGGTGAT+CGG | 0.551438 | 4.4:+10178070 | None:intergenic |
| TATGAAGTAATCTAGACGTT+CGG | 0.553324 | 4.4:+10176366 | None:intergenic |
| ATGTCGCTTGGAATCAAAAT+GGG | 0.554551 | 4.4:-10179436 | MS.gene28100:CDS |
| TTTCTCCACTAAGTTTGTTG+TGG | 0.555388 | 4.4:+10177481 | None:intergenic |
| ATTGGCAATGCCGCCGTGCA+TGG | 0.558606 | 4.4:-10178013 | MS.gene28100:CDS |
| GTAGTCGAGAATCGTTACTT+CGG | 0.559361 | 4.4:+10177562 | None:intergenic |
| GGTAGTGTTGATATGTCGCT+TGG | 0.560567 | 4.4:-10179448 | MS.gene28100:CDS |
| TTCATCGGTGATCGGATCAA+AGG | 0.561998 | 4.4:+10178078 | None:intergenic |
| GATCGAATATGGAATGACAT+TGG | 0.564847 | 4.4:-10176057 | MS.gene28100:CDS |
| CGAGAATCGTTACTTCGGGT+TGG | 0.565234 | 4.4:+10177567 | None:intergenic |
| GGTGCTATCAAATGGTGGAT+TGG | 0.567024 | 4.4:-10178031 | MS.gene28100:CDS |
| TTTATTCTATGCAGTCTTTG+GGG | 0.568032 | 4.4:-10179332 | MS.gene28100:intron |
| CGCTTCCTTCGGTTAATAAG+CGG | 0.569278 | 4.4:-10177721 | MS.gene28100:CDS |
| ATCAAGAGCATAAAGATCGC+AGG | 0.572870 | 4.4:+10176077 | None:intergenic |
| GAGATGGAAAATTGCAGTCG+TGG | 0.573646 | 4.4:-10179721 | MS.gene28100:CDS |
| AAATCCAGTTACTGCTAGGT+GGG | 0.573812 | 4.4:-10176534 | MS.gene28100:CDS |
| GAAAGCACTCAAAACCACTC+GGG | 0.574745 | 4.4:-10176325 | MS.gene28100:CDS |
| TCGGTCATAGCAAAACAACC+TGG | 0.575066 | 4.4:+10179236 | None:intergenic |
| AAAGTCACTCAGCATCTGTA+GGG | 0.575237 | 4.4:-10177363 | MS.gene28100:CDS |
| AGTATCAATAATAAATTCAT+CGG | 0.575429 | 4.4:+10178063 | None:intergenic |
| CAAATGATGGTGCTATCAAA+TGG | 0.582753 | 4.4:-10178039 | MS.gene28100:CDS |
| TGTGGCAAACTTGCCATGCA+CGG | 0.584688 | 4.4:+10178000 | None:intergenic |
| GAAATTACCATGGTGAAGCT+CGG | 0.587206 | 4.4:+10179217 | None:intergenic |
| CAAATCCAGTTACTGCTAGG+TGG | 0.589069 | 4.4:-10176535 | MS.gene28100:CDS |
| CCAAGTGAGGAATATTGCAA+AGG | 0.590762 | 4.4:-10175358 | MS.gene28100:CDS |
| AATATCTAAGTTTCCAAGTG+AGG | 0.594631 | 4.4:-10175371 | MS.gene28100:CDS |
| GGAAGGTGAAGACCATCTAC+GGG | 0.594722 | 4.4:-10176513 | MS.gene28100:CDS |
| ATTGATAACTTGGATTACCC+AGG | 0.595258 | 4.4:-10179254 | MS.gene28100:CDS |
| TCCCTCTCAGGTTACATGAG+AGG | 0.595272 | 4.4:-10179673 | MS.gene28100:CDS |
| ATCTTCCCGATCATGTAACA+AGG | 0.597775 | 4.4:-10175317 | MS.gene28100:CDS |
| AGATGGAAAATTGCAGTCGT+GGG | 0.601939 | 4.4:-10179720 | MS.gene28100:CDS |
| CTCCATTATCAACACCATTG+AGG | 0.603969 | 4.4:+10177831 | None:intergenic |
| GCATAAGTTGAAGCCAGCAT+GGG | 0.604077 | 4.4:+10177515 | None:intergenic |
| CGCTTACAGAAGAATATGCA+AGG | 0.604155 | 4.4:+10177657 | None:intergenic |
| GATTTACAGCAGCATAGCCA+TGG | 0.606308 | 4.4:+10177327 | None:intergenic |
| ACTCTCGGGGAACTTGTTGG+TGG | 0.607843 | 4.4:-10177689 | MS.gene28100:CDS |
| CACATAATCAACATTACGGT+AGG | 0.614344 | 4.4:+10176032 | None:intergenic |
| ATCGGTGATCGGATCAAAGG+TGG | 0.615298 | 4.4:+10178081 | None:intergenic |
| TAAATCGGTTTGGTTCCTTG+AGG | 0.616748 | 4.4:-10177310 | MS.gene28100:CDS |
| AATGTCATGATCATTCCTCA+AGG | 0.624425 | 4.4:+10177295 | None:intergenic |
| CAATAGTGGCCGAAACCTTG+AGG | 0.628582 | 4.4:+10177633 | None:intergenic |
| AGCCAAATCCAGTTACTGCT+AGG | 0.628605 | 4.4:-10176538 | MS.gene28100:CDS |
| CGGTCATAGCAAAACAACCT+GGG | 0.629589 | 4.4:+10179237 | None:intergenic |
| ATCTGTAGGGAAGCCTGTGG+AGG | 0.630281 | 4.4:-10177350 | MS.gene28100:CDS |
| TCATTAACAACATAATGAAG+AGG | 0.630936 | 4.4:+10179505 | None:intergenic |
| TGGAGCTCTGAGATTCCGCT+CGG | 0.634763 | 4.4:-10177813 | MS.gene28100:CDS |
| GCGGTTCGGTGCAACTCTCG+GGG | 0.635090 | 4.4:-10177702 | MS.gene28100:CDS |
| TTCCTCTCATGTAACCTGAG+AGG | 0.636126 | 4.4:+10179671 | None:intergenic |
| ACCAGAGAAAGTTCCAAGGA+GGG | 0.638300 | 4.4:-10176616 | MS.gene28100:CDS |
| AAAGCACTCAAAACCACTCG+GGG | 0.639876 | 4.4:-10176324 | MS.gene28100:CDS |
| TAAACAGGTTCAAATGTGCA+GGG | 0.642404 | 4.4:-10178118 | MS.gene28100:intron |
| CGGTTTAGAAGGTTGTCTCG+AGG | 0.643754 | 4.4:+10177782 | None:intergenic |
| GCTATGACCGAGCTTCACCA+TGG | 0.647722 | 4.4:-10179224 | MS.gene28100:intron |
| GAGGGACTTTAGCAGTGACA+TGG | 0.650482 | 4.4:-10176598 | MS.gene28100:CDS |
| CCGAACCGCTTATTAACCGA+AGG | 0.655393 | 4.4:+10177716 | None:intergenic |
| CAATACCAGAGAAAGTTCCA+AGG | 0.658899 | 4.4:-10176620 | MS.gene28100:CDS |
| AATTCATTGAAGCTGTGCAG+AGG | 0.660461 | 4.4:-10176223 | MS.gene28100:intron |
| TGTGGCTCCCAACAAAGCCA+AGG | 0.662996 | 4.4:-10176013 | MS.gene28100:intron |
| ACGAAGTAGAGAATATCTGA+TGG | 0.663385 | 4.4:+10177610 | None:intergenic |
| TCGTGGGAAGAAATTAATCG+TGG | 0.673880 | 4.4:-10179704 | MS.gene28100:CDS |
| CTCGAGGAATTCTCACCGAG+CGG | 0.676358 | 4.4:+10177798 | None:intergenic |
| ATGATGGTGCTATCAAATGG+TGG | 0.677203 | 4.4:-10178036 | MS.gene28100:CDS |
| GGAATTGAGATACATGATTG+TGG | 0.680398 | 4.4:-10177866 | MS.gene28100:CDS |
| AGCATCTGTAGGGAAGCCTG+TGG | 0.690374 | 4.4:-10177353 | MS.gene28100:CDS |
| TACCAGAGAAAGTTCCAAGG+AGG | 0.691237 | 4.4:-10176617 | MS.gene28100:CDS |
| GGCAAACTTGCCATGCACGG+CGG | 0.694769 | 4.4:+10178003 | None:intergenic |
| CATGCACCAAAGTCCCCGAG+TGG | 0.710764 | 4.4:+10176311 | None:intergenic |
| TCTTCCCGATCATGTAACAA+GGG | 0.717458 | 4.4:-10175316 | MS.gene28100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATAATAGATAAATAA+AGG | - | chr4.4:10177973-10177992 | MS.gene28100:CDS | 10.0% |
| !! | TTATAAATTAAAGTAAAATG+TGG | - | chr4.4:10176586-10176605 | MS.gene28100:CDS | 10.0% |
| !!! | TATTTGTTTTTATCTTAATT+GGG | - | chr4.4:10176752-10176771 | MS.gene28100:intron | 10.0% |
| !!! | TTACTTTAATTTATAATGAT+GGG | + | chr4.4:10176582-10176601 | None:intergenic | 10.0% |
| !!! | TTTACTTTAATTTATAATGA+TGG | + | chr4.4:10176583-10176602 | None:intergenic | 10.0% |
| !! | AGTATCAATAATAAATTCAT+CGG | + | chr4.4:10176912-10176931 | None:intergenic | 15.0% |
| !!! | ATAGGTATTTTTTTTCATTT+GGG | - | chr4.4:10175567-10175586 | MS.gene28100:intron | 15.0% |
| !!! | ATGAAATCTTTTGAAAATTT+TGG | + | chr4.4:10178116-10178135 | None:intergenic | 15.0% |
| !!! | GTATTTGTTTTTATCTTAAT+TGG | - | chr4.4:10176751-10176770 | MS.gene28100:intron | 15.0% |
| !!! | TATAATTTTTTTGTTTAGCA+AGG | + | chr4.4:10177879-10177898 | None:intergenic | 15.0% |
| !!! | TATAGGTATTTTTTTTCATT+TGG | - | chr4.4:10175566-10175585 | MS.gene28100:intron | 15.0% |
| !! | ATCAATTATATGTTAGAGAA+AGG | + | chr4.4:10178787-10178806 | None:intergenic | 20.0% |
| !! | TCGTGTTCATAAAAATATAA+AGG | - | chr4.4:10176237-10176256 | MS.gene28100:CDS | 20.0% |
| !! | TGTGAGATAAAATTCAAAAT+GGG | - | chr4.4:10176364-10176383 | MS.gene28100:CDS | 20.0% |
| !! | TTGTGAGATAAAATTCAAAA+TGG | - | chr4.4:10176363-10176382 | MS.gene28100:CDS | 20.0% |
| !!! | AAGAAATTTTTTATGTACCT+TGG | + | chr4.4:10178979-10178998 | None:intergenic | 20.0% |
| !!! | AATTTTTCCTTTACAAATGA+AGG | - | chr4.4:10178309-10178328 | MS.gene28100:intron | 20.0% |
| !!! | ATAAAAATATAAAGGCATGT+GGG | - | chr4.4:10176245-10176264 | MS.gene28100:CDS | 20.0% |
| !!! | TATCTTTGGAAATTTCAATA+GGG | + | chr4.4:10175388-10175407 | None:intergenic | 20.0% |
| !!! | TCATTGATTTATGTATTCAT+TGG | + | chr4.4:10179047-10179066 | None:intergenic | 20.0% |
| !!! | TGAAAATTTTGGATTTCATT+TGG | + | chr4.4:10178105-10178124 | None:intergenic | 20.0% |
| !!! | TTATCTTTGGAAATTTCAAT+AGG | + | chr4.4:10175389-10175408 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGTTTTGATGAA+TGG | - | chr4.4:10175617-10175636 | MS.gene28100:intron | 20.0% |
| ! | AAAATAGCAAAATACTTAGC+AGG | + | chr4.4:10175494-10175513 | None:intergenic | 25.0% |
| ! | AACTATTACTAAAGCTTCTT+TGG | - | chr4.4:10178060-10178079 | MS.gene28100:CDS | 25.0% |
| ! | AGTGTGCATAGTAATAATTA+AGG | - | chr4.4:10176621-10176640 | MS.gene28100:CDS | 25.0% |
| ! | ATAATAAATTCATCGGTGAT+CGG | + | chr4.4:10176905-10176924 | None:intergenic | 25.0% |
| ! | ATTATTGATACTCCAAATGA+TGG | - | chr4.4:10176920-10176939 | MS.gene28100:intron | 25.0% |
| ! | ATTGCATTTCTTAATATGTG+TGG | + | chr4.4:10176499-10176518 | None:intergenic | 25.0% |
| ! | CAACTATTAATTTATGACTG+TGG | - | chr4.4:10177837-10177856 | MS.gene28100:CDS | 25.0% |
| ! | GCTTTAGTAATAGTTAATCT+TGG | + | chr4.4:10178055-10178074 | None:intergenic | 25.0% |
| ! | GTGTGCATAGTAATAATTAA+GGG | - | chr4.4:10176622-10176641 | MS.gene28100:CDS | 25.0% |
| ! | GTTAATCTTGGAATATATCA+AGG | + | chr4.4:10178043-10178062 | None:intergenic | 25.0% |
| ! | TAAAGTAAAATGTGGTACTT+TGG | - | chr4.4:10176594-10176613 | MS.gene28100:CDS | 25.0% |
| ! | TATCTTAATTGGGTTTCTAT+TGG | - | chr4.4:10176762-10176781 | MS.gene28100:intron | 25.0% |
| ! | TCATTAACAACATAATGAAG+AGG | + | chr4.4:10175470-10175489 | None:intergenic | 25.0% |
| ! | TGTGCATAGTAATAATTAAG+GGG | - | chr4.4:10176623-10176642 | MS.gene28100:CDS | 25.0% |
| ! | TTACCTAATTATGATGCAAA+AGG | - | chr4.4:10177013-10177032 | MS.gene28100:intron | 25.0% |
| ! | TTTGGTAGAGTAATTTAAAG+CGG | - | chr4.4:10176316-10176335 | MS.gene28100:CDS | 25.0% |
| !! | AAAGCATCCAATTGAAATTT+AGG | + | chr4.4:10178487-10178506 | None:intergenic | 25.0% |
| !! | AATAAATGTTTAGTTCAGAG+AGG | + | chr4.4:10179388-10179407 | None:intergenic | 25.0% |
| !! | AATGGTATTTAGAATCAAAG+GGG | + | chr4.4:10178016-10178035 | None:intergenic | 25.0% |
| !! | AATTTTATCTCACAATCAGA+TGG | + | chr4.4:10176358-10176377 | None:intergenic | 25.0% |
| !! | AATTTTGTGAAGTGAAAAGT+GGG | - | chr4.4:10176214-10176233 | MS.gene28100:intron | 25.0% |
| !! | AGAATGGTATTTAGAATCAA+AGG | + | chr4.4:10178018-10178037 | None:intergenic | 25.0% |
| !! | ATCTTTGGAAATTTCAATAG+GGG | + | chr4.4:10175387-10175406 | None:intergenic | 25.0% |
| !! | CATAAAAATATAAAGGCATG+TGG | - | chr4.4:10176244-10176263 | MS.gene28100:CDS | 25.0% |
| !! | GAATGGTATTTAGAATCAAA+GGG | + | chr4.4:10178017-10178036 | None:intergenic | 25.0% |
| !! | TAAAAATATAAAGGCATGTG+GGG | - | chr4.4:10176246-10176265 | MS.gene28100:CDS | 25.0% |
| !!! | AAAATAGCCTTGTTAACTAT+TGG | - | chr4.4:10176549-10176568 | MS.gene28100:CDS | 25.0% |
| !!! | ATTAGCTCTTTTACAATGAA+AGG | + | chr4.4:10179104-10179123 | None:intergenic | 25.0% |
| !!! | CAATTTTCCCAATTTTAACA+CGG | - | chr4.4:10178818-10178837 | MS.gene28100:intron | 25.0% |
| !!! | TAATAATTAAGGGGTACTAT+TGG | - | chr4.4:10176632-10176651 | MS.gene28100:CDS | 25.0% |
| !!! | TGCTAAGTATTTTGCTATTT+TGG | - | chr4.4:10175493-10175512 | MS.gene28100:intron | 25.0% |
| !!! | TTTCTTTTTTGTGCATAAAC+AGG | - | chr4.4:10176839-10176858 | MS.gene28100:intron | 25.0% |
| AAATAGGCCGTGTTAAAATT+GGG | + | chr4.4:10178828-10178847 | None:intergenic | 30.0% | |
| AAATGCACCAATAGTTAACA+AGG | + | chr4.4:10176559-10176578 | None:intergenic | 30.0% | |
| AAGAGCTAATAACTTCTATG+AGG | - | chr4.4:10179114-10179133 | MS.gene28100:intron | 30.0% | |
| AAGGTGTAGATTATAGAACA+AGG | + | chr4.4:10177908-10177927 | None:intergenic | 30.0% | |
| AATATCTAAGTTTCCAAGTG+AGG | - | chr4.4:10179601-10179620 | MS.gene28100:CDS | 30.0% | |
| ACAGACTTGTGAAACTATTT+GGG | - | chr4.4:10175826-10175845 | MS.gene28100:intron | 30.0% | |
| AGAATAGTGAACAAATCATC+AGG | - | chr4.4:10177942-10177961 | MS.gene28100:CDS | 30.0% | |
| AGAGCTAATAACTTCTATGA+GGG | - | chr4.4:10179115-10179134 | MS.gene28100:intron | 30.0% | |
| AGGAATAACTAGTAAAAACC+AGG | - | chr4.4:10179153-10179172 | MS.gene28100:intron | 30.0% | |
| AGTGATTTAGAAATGTGTAC+CGG | + | chr4.4:10176812-10176831 | None:intergenic | 30.0% | |
| ATACATTCTTGGCAATTCTA+AGG | - | chr4.4:10176181-10176200 | MS.gene28100:intron | 30.0% | |
| ATATGTTAGAGAAAGGAACT+AGG | + | chr4.4:10178780-10178799 | None:intergenic | 30.0% | |
| ATGCTTTCATTGTTCCAATA+AGG | - | chr4.4:10177056-10177075 | MS.gene28100:intron | 30.0% | |
| ATGTTGCAACTAACTCAAAA+TGG | + | chr4.4:10176286-10176305 | None:intergenic | 30.0% | |
| ATTTAACCATGTAGGATCAT+AGG | - | chr4.4:10178172-10178191 | MS.gene28100:intron | 30.0% | |
| CTGGTATTGTTTCAAAAGAT+CGG | + | chr4.4:10178341-10178360 | None:intergenic | 30.0% | |
| GAATAGTGAACAAATCATCA+GGG | - | chr4.4:10177943-10177962 | MS.gene28100:CDS | 30.0% | |
| GGAATAACTAGTAAAAACCA+GGG | - | chr4.4:10179154-10179173 | MS.gene28100:intron | 30.0% | |
| GGAATATATCAAGGTTAGAA+TGG | + | chr4.4:10178034-10178053 | None:intergenic | 30.0% | |
| GTTTATTCTATGCAGTCTTT+GGG | - | chr4.4:10175639-10175658 | MS.gene28100:intron | 30.0% | |
| TACAGACTTGTGAAACTATT+TGG | - | chr4.4:10175825-10175844 | MS.gene28100:intron | 30.0% | |
| TATGAAGTAATCTAGACGTT+CGG | + | chr4.4:10178609-10178628 | None:intergenic | 30.0% | |
| TCAAAATGGGTGTTCAATAT+AGG | - | chr4.4:10175549-10175568 | MS.gene28100:intron | 30.0% | |
| TCATTTGCATTTAACCATGT+AGG | - | chr4.4:10178164-10178183 | MS.gene28100:intron | 30.0% | |
| TGCTTTCATTGTTCCAATAA+GGG | - | chr4.4:10177057-10177076 | MS.gene28100:intron | 30.0% | |
| TGTAGTTATCTATGATCTGA+TGG | - | chr4.4:10177799-10177818 | MS.gene28100:CDS | 30.0% | |
| TTAGATATTCTGACAGTTTG+TGG | + | chr4.4:10179590-10179609 | None:intergenic | 30.0% | |
| TTATAGGAGCAATACATTCT+TGG | - | chr4.4:10176170-10176189 | MS.gene28100:intron | 30.0% | |
| TTATAGTGTTAAAGAGAGCA+AGG | + | chr4.4:10179521-10179540 | None:intergenic | 30.0% | |
| TTTATGCTCTTGATCGAATA+TGG | - | chr4.4:10178904-10178923 | MS.gene28100:intron | 30.0% | |
| TTTATTCTATGCAGTCTTTG+GGG | - | chr4.4:10175640-10175659 | MS.gene28100:intron | 30.0% | |
| ! | AAAAATATAAAGGCATGTGG+GGG | - | chr4.4:10176247-10176266 | MS.gene28100:CDS | 30.0% |
| ! | AAAGATTTTCACTAGCCAAA+TGG | + | chr4.4:10179422-10179441 | None:intergenic | 30.0% |
| ! | AAAGGTTTTTATGAGCTATC+AGG | + | chr4.4:10179086-10179105 | None:intergenic | 30.0% |
| ! | ACCTATGTTTTCCTTCTTTT+TGG | + | chr4.4:10179324-10179343 | None:intergenic | 30.0% |
| ! | ACTCCTTTTGCATCATAATT+AGG | + | chr4.4:10177019-10177038 | None:intergenic | 30.0% |
| ! | AGCTGCAATTTTACAACTTT+TGG | - | chr4.4:10178222-10178241 | MS.gene28100:intron | 30.0% |
| ! | ATTGTGTATGAATCAGCTTT+TGG | - | chr4.4:10175418-10175437 | MS.gene28100:intron | 30.0% |
| ! | CAATTTTGTGAAGTGAAAAG+TGG | - | chr4.4:10176213-10176232 | MS.gene28100:intron | 30.0% |
| ! | CCTATGTTTTCCTTCTTTTT+GGG | + | chr4.4:10179323-10179342 | None:intergenic | 30.0% |
| ! | CTGAGTTGAATTTGAGATTT+AGG | - | chr4.4:10179488-10179507 | MS.gene28100:CDS | 30.0% |
| ! | GCTGCAATTTTACAACTTTT+GGG | - | chr4.4:10178223-10178242 | MS.gene28100:intron | 30.0% |
| ! | TATTGATTATGAGTGCCATT+TGG | - | chr4.4:10179404-10179423 | MS.gene28100:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4.4:10176723-10176742 | MS.gene28100:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr4.4:10176742-10176723 | None:intergenic | 30.0% |
| !! | CTATGATGGTATTGATAACT+TGG | - | chr4.4:10175708-10175727 | MS.gene28100:intron | 30.0% |
| !! | GCTAGTGAAAATCTTTGTTT+TGG | - | chr4.4:10179426-10179445 | MS.gene28100:CDS | 30.0% |
| !! | GTTCTTAAAGTGTTGTCATT+AGG | - | chr4.4:10176099-10176118 | MS.gene28100:CDS | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4.4:10176468-10176487 | MS.gene28100:intron | 30.0% |
| AAATTTCCAACAGAGACACT+AGG | + | chr4.4:10176410-10176429 | None:intergenic | 35.0% | |
| AATGTCATGATCATTCCTCA+AGG | + | chr4.4:10177680-10177699 | None:intergenic | 35.0% | |
| ACGAAGTAGAGAATATCTGA+TGG | + | chr4.4:10177365-10177384 | None:intergenic | 35.0% | |
| ACGGGATCCTAAATTTCAAT+TGG | - | chr4.4:10178477-10178496 | MS.gene28100:intron | 35.0% | |
| AGAATATCTGATGGCAATAG+TGG | + | chr4.4:10177356-10177375 | None:intergenic | 35.0% | |
| AGTGTCTCTGTTGGAAATTT+AGG | - | chr4.4:10176410-10176429 | MS.gene28100:intron | 35.0% | |
| AGTTAGTTGCAACATCATTG+TGG | - | chr4.4:10176291-10176310 | MS.gene28100:CDS | 35.0% | |
| ATAAACAGGTTCAAATGTGC+AGG | - | chr4.4:10176853-10176872 | MS.gene28100:intron | 35.0% | |
| ATGATGTTTCTCCATTTCAC+AGG | - | chr4.4:10179560-10179579 | MS.gene28100:CDS | 35.0% | |
| ATTTCGAGCACGTAAGTAAT+AGG | - | chr4.4:10178282-10178301 | MS.gene28100:intron | 35.0% | |
| CAATCATGTATCTCAATTCC+AGG | + | chr4.4:10177106-10177125 | None:intergenic | 35.0% | |
| CAATTCTCGGTGATTATCTT+TGG | + | chr4.4:10175402-10175421 | None:intergenic | 35.0% | |
| CACATAATCAACATTACGGT+AGG | + | chr4.4:10178943-10178962 | None:intergenic | 35.0% | |
| CATAAGGACAAGTACTATGA+TGG | - | chr4.4:10175694-10175713 | MS.gene28100:intron | 35.0% | |
| CATGATTGTGGTCATAAAGT+TGG | - | chr4.4:10177118-10177137 | MS.gene28100:intron | 35.0% | |
| CCCAAAAAGAAGGAAAACAT+AGG | - | chr4.4:10179320-10179339 | MS.gene28100:CDS | 35.0% | |
| GAAATAGGCCGTGTTAAAAT+TGG | + | chr4.4:10178829-10178848 | None:intergenic | 35.0% | |
| GAGCCACATAATCAACATTA+CGG | + | chr4.4:10178947-10178966 | None:intergenic | 35.0% | |
| GATCATAGATAACTACAGTC+TGG | + | chr4.4:10177796-10177815 | None:intergenic | 35.0% | |
| GATCGAATATGGAATGACAT+TGG | - | chr4.4:10178915-10178934 | MS.gene28100:intron | 35.0% | |
| GCAAAAGGAGTTTCTGATAT+GGG | - | chr4.4:10177028-10177047 | MS.gene28100:intron | 35.0% | |
| GGAATTGAGATACATGATTG+TGG | - | chr4.4:10177106-10177125 | MS.gene28100:intron | 35.0% | |
| GGTTTATTCTATGCAGTCTT+TGG | - | chr4.4:10175638-10175657 | MS.gene28100:intron | 35.0% | |
| GTGATTTAGAAATGTGTACC+GGG | + | chr4.4:10176811-10176830 | None:intergenic | 35.0% | |
| TAAACAGGTTCAAATGTGCA+GGG | - | chr4.4:10176854-10176873 | MS.gene28100:intron | 35.0% | |
| TAACTAGTAAAAACCAGGGT+AGG | - | chr4.4:10179158-10179177 | MS.gene28100:intron | 35.0% | |
| TATGTGAGGGACAACTATAA+TGG | - | chr4.4:10179188-10179207 | MS.gene28100:intron | 35.0% | |
| TCTACACTCTTAGCATCAAT+TGG | + | chr4.4:10176142-10176161 | None:intergenic | 35.0% | |
| TCTCAGTACACACAATTTGT+GGG | - | chr4.4:10179708-10179727 | MS.gene28100:CDS | 35.0% | |
| TGCAAAAGGAGTTTCTGATA+TGG | - | chr4.4:10177027-10177046 | MS.gene28100:intron | 35.0% | |
| TGCAACATCATTGTGGAATT+TGG | - | chr4.4:10176298-10176317 | MS.gene28100:CDS | 35.0% | |
| TGCTTTCTTACCCAAAAAGA+AGG | - | chr4.4:10179310-10179329 | MS.gene28100:CDS | 35.0% | |
| TTTCATTTGGAGAGTAGCAA+AGG | + | chr4.4:10178092-10178111 | None:intergenic | 35.0% | |
| TTTGGGAACACAGAAACATA+AGG | - | chr4.4:10175678-10175697 | MS.gene28100:intron | 35.0% | |
| ! | AAGTGTTGTCATTAGGTTCA+TGG | - | chr4.4:10176106-10176125 | MS.gene28100:CDS | 35.0% |
| ! | AGTGTAGAATGGGTTCTTAT+AGG | - | chr4.4:10176154-10176173 | MS.gene28100:intron | 35.0% |
| ! | ATGTCGCTTGGAATCAAAAT+GGG | - | chr4.4:10175536-10175555 | MS.gene28100:intron | 35.0% |
| ! | ATTGATAACTTGGATTACCC+AGG | - | chr4.4:10175718-10175737 | MS.gene28100:intron | 35.0% |
| ! | CATTTGATAGCACCATCATT+TGG | + | chr4.4:10176935-10176954 | None:intergenic | 35.0% |
| ! | CTACCGTAATGTTGATTATG+TGG | - | chr4.4:10178941-10178960 | MS.gene28100:intron | 35.0% |
| ! | GACATTTTCCAGACATTTGA+AGG | - | chr4.4:10177694-10177713 | MS.gene28100:CDS | 35.0% |
| ! | GCTGATTCATACACAATTCT+CGG | + | chr4.4:10175415-10175434 | None:intergenic | 35.0% |
| ! | GGTGGTTCTGTAATCAATTT+GGG | - | chr4.4:10175661-10175680 | MS.gene28100:intron | 35.0% |
| ! | GTGTACCTTTCCTTTGTTTA+TGG | - | chr4.4:10178198-10178217 | MS.gene28100:intron | 35.0% |
| ! | TATGTCGCTTGGAATCAAAA+TGG | - | chr4.4:10175535-10175554 | MS.gene28100:intron | 35.0% |
| ! | TGAGCTTTGTCTTATTCTGT+CGG | - | chr4.4:10176053-10176072 | MS.gene28100:CDS | 35.0% |
| ! | TGATGCTAAGAGTGTAGAAT+GGG | - | chr4.4:10176144-10176163 | MS.gene28100:intron | 35.0% |
| ! | TTGATGCTAAGAGTGTAGAA+TGG | - | chr4.4:10176143-10176162 | MS.gene28100:intron | 35.0% |
| ! | TTTTGCCACAACAAACTTAG+TGG | - | chr4.4:10177486-10177505 | MS.gene28100:CDS | 35.0% |
| !! | AATTCCAGGAAGTGTTTGAT+GGG | + | chr4.4:10177092-10177111 | None:intergenic | 35.0% |
| !! | CAAATGATGGTGCTATCAAA+TGG | - | chr4.4:10176933-10176952 | MS.gene28100:intron | 35.0% |
| !! | TTATGTACCTTGGCTTTGTT+GGG | + | chr4.4:10178969-10178988 | None:intergenic | 35.0% |
| !! | TTTATGTACCTTGGCTTTGT+TGG | + | chr4.4:10178970-10178989 | None:intergenic | 35.0% |
| !! | TTTCTCCACTAAGTTTGTTG+TGG | + | chr4.4:10177494-10177513 | None:intergenic | 35.0% |
| !! | TTTTACAACTTTTGGGTGTG+CGG | - | chr4.4:10178230-10178249 | MS.gene28100:intron | 35.0% |
| !!! | GTTATTCCTGCTTTTTAGAG+TGG | + | chr4.4:10179142-10179161 | None:intergenic | 35.0% |
| !!! | TTTGCTATTTTGGAAGCTGT+TGG | - | chr4.4:10175503-10175522 | MS.gene28100:intron | 35.0% |
| AAAGTCACTCAGCATCTGTA+GGG | - | chr4.4:10177609-10177628 | MS.gene28100:CDS | 40.0% | |
| AAATCCAGTTACTGCTAGGT+GGG | - | chr4.4:10178438-10178457 | MS.gene28100:intron | 40.0% | |
| AATTCATTGAAGCTGTGCAG+AGG | - | chr4.4:10178749-10178768 | MS.gene28100:intron | 40.0% | |
| AGCTGCCATAAACAAAGGAA+AGG | + | chr4.4:10178206-10178225 | None:intergenic | 40.0% | |
| ATCTTCCCGATCATGTAACA+AGG | - | chr4.4:10179655-10179674 | MS.gene28100:CDS | 40.0% | |
| ATGGCTATGCTGCTGTAAAT+CGG | - | chr4.4:10177647-10177666 | MS.gene28100:CDS | 40.0% | |
| ATTCTCCACAGTCTACACTA+AGG | + | chr4.4:10177927-10177946 | None:intergenic | 40.0% | |
| ATTGCAGCTGCCATAAACAA+AGG | + | chr4.4:10178211-10178230 | None:intergenic | 40.0% | |
| CAAATTCAACTCAGTGCTTC+TGG | + | chr4.4:10179482-10179501 | None:intergenic | 40.0% | |
| CAACACAGTTCTTCTTCAAC+AGG | - | chr4.4:10177720-10177739 | MS.gene28100:CDS | 40.0% | |
| CAATACCAGAGAAAGTTCCA+AGG | - | chr4.4:10178352-10178371 | MS.gene28100:intron | 40.0% | |
| CAATTGAAACAAGCTCAGAG+AGG | + | chr4.4:10175780-10175799 | None:intergenic | 40.0% | |
| CACGAGAAACATCTCCAAAA+CGG | + | chr4.4:10177213-10177232 | None:intergenic | 40.0% | |
| CACTTTCCTATGATCCTACA+TGG | + | chr4.4:10178181-10178200 | None:intergenic | 40.0% | |
| CATCTCCAAAACGGTTTAGA+AGG | + | chr4.4:10177204-10177223 | None:intergenic | 40.0% | |
| CCAAGTGAGGAATATTGCAA+AGG | - | chr4.4:10179614-10179633 | MS.gene28100:CDS | 40.0% | |
| CCTTTGCAATATTCCTCACT+TGG | + | chr4.4:10179617-10179636 | None:intergenic | 40.0% | |
| CGCTTACAGAAGAATATGCA+AGG | + | chr4.4:10177318-10177337 | None:intergenic | 40.0% | |
| CTCCATTATCAACACCATTG+AGG | + | chr4.4:10177144-10177163 | None:intergenic | 40.0% | |
| CTCTCAGTACACACAATTTG+TGG | - | chr4.4:10179707-10179726 | MS.gene28100:CDS | 40.0% | |
| CTGTGACAGATAAGTACTCA+TGG | + | chr4.4:10178416-10178435 | None:intergenic | 40.0% | |
| CTTCAACCTAGCAAAAACTG+TGG | + | chr4.4:10176993-10177012 | None:intergenic | 40.0% | |
| GAAATTACCATGGTGAAGCT+CGG | + | chr4.4:10175758-10175777 | None:intergenic | 40.0% | |
| GCTGCAACCTTCATTTGTAA+AGG | + | chr4.4:10178319-10178338 | None:intergenic | 40.0% | |
| GTAGTCGAGAATCGTTACTT+CGG | + | chr4.4:10177413-10177432 | None:intergenic | 40.0% | |
| GTTGGAAATTTAGGTGCACT+GGG | - | chr4.4:10176419-10176438 | MS.gene28100:intron | 40.0% | |
| TAAAAACCAGGGTAGGTAGT+GGG | - | chr4.4:10179165-10179184 | MS.gene28100:intron | 40.0% | |
| TAAGCTTATGCTGATGAGAC+TGG | + | chr4.4:10177435-10177454 | None:intergenic | 40.0% | |
| TAGTCGAGAATCGTTACTTC+GGG | + | chr4.4:10177412-10177431 | None:intergenic | 40.0% | |
| TATGCTGCTGTAAATCGGTT+TGG | - | chr4.4:10177652-10177671 | MS.gene28100:CDS | 40.0% | |
| TCAATAGGGGTTAGAAGATG+TGG | + | chr4.4:10175374-10175393 | None:intergenic | 40.0% | |
| TCGGTTGAGCAACTTCTATA+GGG | - | chr4.4:10176072-10176091 | MS.gene28100:CDS | 40.0% | |
| TCGTGGGAAGAAATTAATCG+TGG | - | chr4.4:10175268-10175287 | MS.gene28100:CDS | 40.0% | |
| TCTCTACTTCGTCAGCAATT+TGG | - | chr4.4:10177373-10177392 | MS.gene28100:CDS | 40.0% | |
| TCTTCCCGATCATGTAACAA+GGG | - | chr4.4:10179656-10179675 | MS.gene28100:CDS | 40.0% | |
| TGGGTCTTCATATCCCTTAT+TGG | + | chr4.4:10177073-10177092 | None:intergenic | 40.0% | |
| TGTTGGAAATTTAGGTGCAC+TGG | - | chr4.4:10176418-10176437 | MS.gene28100:intron | 40.0% | |
| TGTTGTCTCCTTCAAATGTC+TGG | + | chr4.4:10177705-10177724 | None:intergenic | 40.0% | |
| TTATCAAGTGCCTACAGCAT+AGG | + | chr4.4:10176001-10176020 | None:intergenic | 40.0% | |
| TTCATAAGCACCTATGCTGT+AGG | - | chr4.4:10175988-10176007 | MS.gene28100:intron | 40.0% | |
| TTGGAGATGTTTCTCGTGAT+GGG | - | chr4.4:10177215-10177234 | MS.gene28100:intron | 40.0% | |
| TTTGGAGATGTTTCTCGTGA+TGG | - | chr4.4:10177214-10177233 | MS.gene28100:intron | 40.0% | |
| ! | AGTTTGCCACAGTTTTTGCT+AGG | - | chr4.4:10176984-10177003 | MS.gene28100:intron | 40.0% |
| ! | ATCAAGAGCATAAAGATCGC+AGG | + | chr4.4:10178898-10178917 | None:intergenic | 40.0% |
| ! | CTCTCTGAGCTTGTTTCAAT+TGG | - | chr4.4:10175778-10175797 | MS.gene28100:intron | 40.0% |
| ! | GAAATTTAGGATCCCGTAGA+TGG | + | chr4.4:10178474-10178493 | None:intergenic | 40.0% |
| ! | GACAACCTTCTAAACCGTTT+TGG | - | chr4.4:10177196-10177215 | MS.gene28100:intron | 40.0% |
| ! | GGGTGGTTCTGTAATCAATT+TGG | - | chr4.4:10175660-10175679 | MS.gene28100:intron | 40.0% |
| ! | TTTGTGGATTGCCTGTGAAA+TGG | + | chr4.4:10179574-10179593 | None:intergenic | 40.0% |
| !! | ATGATGGTGCTATCAAATGG+TGG | - | chr4.4:10176936-10176955 | MS.gene28100:intron | 40.0% |
| !! | CAATTCCAGGAAGTGTTTGA+TGG | + | chr4.4:10177093-10177112 | None:intergenic | 40.0% |
| !! | TAAATCGGTTTGGTTCCTTG+AGG | - | chr4.4:10177662-10177681 | MS.gene28100:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4.4:10176727-10176746 | MS.gene28100:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4.4:10176746-10176727 | None:intergenic | 40.0% |
| AAGACCCATCAAACACTTCC+TGG | - | chr4.4:10177085-10177104 | MS.gene28100:intron | 45.0% | |
| ACAGATGCTGAGTGACTTTG+CGG | + | chr4.4:10177608-10177627 | None:intergenic | 45.0% | |
| ACCAGAGAAAGTTCCAAGGA+GGG | - | chr4.4:10178356-10178375 | MS.gene28100:intron | 45.0% | |
| AGAGTAAGCTCCTGATTGCT+TGG | + | chr4.4:10179691-10179710 | None:intergenic | 45.0% | |
| AGCCAAATCCAGTTACTGCT+AGG | - | chr4.4:10178434-10178453 | MS.gene28100:intron | 45.0% | |
| AGGTGCCCTTGTTACATGAT+CGG | + | chr4.4:10179664-10179683 | None:intergenic | 45.0% | |
| CAAAGGTGGCAAGAGTTTGA+AGG | + | chr4.4:10176880-10176899 | None:intergenic | 45.0% | |
| CAAAGTCACTCAGCATCTGT+AGG | - | chr4.4:10177608-10177627 | MS.gene28100:CDS | 45.0% | |
| CAAATCCAGTTACTGCTAGG+TGG | - | chr4.4:10178437-10178456 | MS.gene28100:intron | 45.0% | |
| CACCTAGCAGTAACTGGATT+TGG | + | chr4.4:10178439-10178458 | None:intergenic | 45.0% | |
| CCTTCGGTTAATAAGCGGTT+CGG | - | chr4.4:10177256-10177275 | MS.gene28100:CDS | 45.0% | |
| CGCTTCCTTCGGTTAATAAG+CGG | - | chr4.4:10177251-10177270 | MS.gene28100:intron | 45.0% | |
| CGGTCATAGCAAAACAACCT+GGG | + | chr4.4:10175738-10175757 | None:intergenic | 45.0% | |
| CTACACCTTAGTGTAGACTG+TGG | - | chr4.4:10177919-10177938 | MS.gene28100:CDS | 45.0% | |
| GATTTACAGCAGCATAGCCA+TGG | + | chr4.4:10177648-10177667 | None:intergenic | 45.0% | |
| GCTCAGAGAGGAAATTACCA+TGG | + | chr4.4:10175768-10175787 | None:intergenic | 45.0% | |
| GTAAAAACCAGGGTAGGTAG+TGG | - | chr4.4:10179164-10179183 | MS.gene28100:intron | 45.0% | |
| GTACACAAGTACGCTTCCTT+CGG | - | chr4.4:10177240-10177259 | MS.gene28100:intron | 45.0% | |
| GTCGGTTGAGCAACTTCTAT+AGG | - | chr4.4:10176071-10176090 | MS.gene28100:CDS | 45.0% | |
| TACCAGAGAAAGTTCCAAGG+AGG | - | chr4.4:10178355-10178374 | MS.gene28100:intron | 45.0% | |
| TCCTCTCATGTAACCTGAGA+GGG | + | chr4.4:10175303-10175322 | None:intergenic | 45.0% | |
| TCGGTCATAGCAAAACAACC+TGG | + | chr4.4:10175739-10175758 | None:intergenic | 45.0% | |
| TGAGCAACTTCTATAGGGCT+GGG | - | chr4.4:10176077-10176096 | MS.gene28100:CDS | 45.0% | |
| TGTAAGCGTCCTCAAGGTTT+CGG | - | chr4.4:10177330-10177349 | MS.gene28100:CDS | 45.0% | |
| TTCATCGGTGATCGGATCAA+AGG | + | chr4.4:10176897-10176916 | None:intergenic | 45.0% | |
| TTCCTCTCATGTAACCTGAG+AGG | + | chr4.4:10175304-10175323 | None:intergenic | 45.0% | |
| TTCTTCTGTAAGCGTCCTCA+AGG | - | chr4.4:10177324-10177343 | MS.gene28100:CDS | 45.0% | |
| TTGAGCAACTTCTATAGGGC+TGG | - | chr4.4:10176076-10176095 | MS.gene28100:CDS | 45.0% | |
| TTTCCAACAGAGACACTAGG+AGG | + | chr4.4:10176407-10176426 | None:intergenic | 45.0% | |
| ! | AAAGCACTCAAAACCACTCG+GGG | - | chr4.4:10178648-10178667 | MS.gene28100:intron | 45.0% |
| ! | ATTCTATGCAGTCTTTGGGG+TGG | - | chr4.4:10175643-10175662 | MS.gene28100:intron | 45.0% |
| ! | GCATAAGTTGAAGCCAGCAT+GGG | + | chr4.4:10177460-10177479 | None:intergenic | 45.0% |
| ! | GGTCATAAAGTTGGCCTCAA+TGG | - | chr4.4:10177127-10177146 | MS.gene28100:intron | 45.0% |
| ! | TGCATAAGTTGAAGCCAGCA+TGG | + | chr4.4:10177461-10177480 | None:intergenic | 45.0% |
| ! | TTGGCTCTTGTTAGAGAAGC+TGG | - | chr4.4:10175437-10175456 | MS.gene28100:intron | 45.0% |
| !! | CGAAAGCACTCAAAACCACT+CGG | - | chr4.4:10178646-10178665 | MS.gene28100:intron | 45.0% |
| !! | CTTCTGGCGTTGTTTTCAGA+AGG | + | chr4.4:10179466-10179485 | None:intergenic | 45.0% |
| !! | GAAAGCACTCAAAACCACTC+GGG | - | chr4.4:10178647-10178666 | MS.gene28100:intron | 45.0% |
| !! | GGCCTCAATGGTGTTGATAA+TGG | - | chr4.4:10177139-10177158 | MS.gene28100:intron | 45.0% |
| !! | GGTAGTGTTGATATGTCGCT+TGG | - | chr4.4:10175524-10175543 | MS.gene28100:intron | 45.0% |
| !! | GGTGCTATCAAATGGTGGAT+TGG | - | chr4.4:10176941-10176960 | MS.gene28100:intron | 45.0% |
| !! | TAAAGCGGTGTCGCATAGTA+TGG | - | chr4.4:10176331-10176350 | MS.gene28100:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4.4:10176726-10176745 | MS.gene28100:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4.4:10176745-10176726 | None:intergenic | 45.0% |
| !!! | TAAAATTATTATAATCTTTT+CGG | - | chr4.4:10179004-10179023 | MS.gene28100:intron | 5.0% |
| AACAGAGACACTAGGAGGCT+AGG | + | chr4.4:10176402-10176421 | None:intergenic | 50.0% | |
| AGGACAGCTGGTGCAGAAAT+AGG | + | chr4.4:10178844-10178863 | None:intergenic | 50.0% | |
| ATCGGTGATCGGATCAAAGG+TGG | + | chr4.4:10176894-10176913 | None:intergenic | 50.0% | |
| CAATAGTGGCCGAAACCTTG+AGG | + | chr4.4:10177342-10177361 | None:intergenic | 50.0% | |
| CCGAACCGCTTATTAACCGA+AGG | + | chr4.4:10177259-10177278 | None:intergenic | 50.0% | |
| CGAGAATCGTTACTTCGGGT+TGG | + | chr4.4:10177408-10177427 | None:intergenic | 50.0% | |
| CGGTTTAGAAGGTTGTCTCG+AGG | + | chr4.4:10177193-10177212 | None:intergenic | 50.0% | |
| GAGGGACTTTAGCAGTGACA+TGG | - | chr4.4:10178374-10178393 | MS.gene28100:intron | 50.0% | |
| GCACCTATTGCCAAGCAATC+AGG | - | chr4.4:10179678-10179697 | MS.gene28100:CDS | 50.0% | |
| GCATAAGCTTATGCCCATGC+TGG | - | chr4.4:10177444-10177463 | MS.gene28100:CDS | 50.0% | |
| GCTACTGCATAGCACTTACC+CGG | - | chr4.4:10176790-10176809 | MS.gene28100:intron | 50.0% | |
| GCTCCTGATTGCTTGGCAAT+AGG | + | chr4.4:10179684-10179703 | None:intergenic | 50.0% | |
| GGAAGGTGAAGACCATCTAC+GGG | - | chr4.4:10178459-10178478 | MS.gene28100:intron | 50.0% | |
| GGGAAGGTGAAGACCATCTA+CGG | - | chr4.4:10178458-10178477 | MS.gene28100:intron | 50.0% | |
| GGGTGTGCGGTGTGTTTATT+TGG | - | chr4.4:10178243-10178262 | MS.gene28100:intron | 50.0% | |
| GGTGCCCTTGTTACATGATC+GGG | + | chr4.4:10179663-10179682 | None:intergenic | 50.0% | |
| GTGGACACAAATTCCCTCTC+AGG | - | chr4.4:10175287-10175306 | MS.gene28100:CDS | 50.0% | |
| TAGCCTCCTAGTGTCTCTGT+TGG | - | chr4.4:10176401-10176420 | MS.gene28100:intron | 50.0% | |
| TCAAAACCACTCGGGGACTT+TGG | - | chr4.4:10178655-10178674 | MS.gene28100:intron | 50.0% | |
| TCACTGCTAAAGTCCCTCCT+TGG | + | chr4.4:10178372-10178391 | None:intergenic | 50.0% | |
| TCCCTCCTTGGAACTTTCTC+TGG | + | chr4.4:10178360-10178379 | None:intergenic | 50.0% | |
| TCCCTCTCAGGTTACATGAG+AGG | - | chr4.4:10175299-10175318 | MS.gene28100:CDS | 50.0% | |
| TGCAGATGTCCATGCTCTCT+CGG | - | chr4.4:10177552-10177571 | MS.gene28100:CDS | 50.0% | |
| TGTGGCAAACTTGCCATGCA+CGG | + | chr4.4:10176975-10176994 | None:intergenic | 50.0% | |
| ! | GAGGGACCACTCTAAAAAGC+AGG | - | chr4.4:10179133-10179152 | MS.gene28100:intron | 50.0% |
| !! | GAACTTGTTGGTGGTAGGGT+AGG | - | chr4.4:10177292-10177311 | MS.gene28100:CDS | 50.0% |
| !! | GGTAGGTAGTGGGTATGTGA+GGG | - | chr4.4:10179175-10179194 | MS.gene28100:intron | 50.0% |
| AGCATCTGTAGGGAAGCCTG+TGG | - | chr4.4:10177619-10177638 | MS.gene28100:CDS | 55.0% | |
| ATCTGTAGGGAAGCCTGTGG+AGG | - | chr4.4:10177622-10177641 | MS.gene28100:CDS | 55.0% | |
| CACATACCCACTACCTACCC+TGG | + | chr4.4:10179174-10179193 | None:intergenic | 55.0% | |
| CCAGTTACTGCTAGGTGGGA+AGG | - | chr4.4:10178442-10178461 | MS.gene28100:intron | 55.0% | |
| CCTTCCCACCTAGCAGTAAC+TGG | + | chr4.4:10178445-10178464 | None:intergenic | 55.0% | |
| CTCGAGGAATTCTCACCGAG+CGG | + | chr4.4:10177177-10177196 | None:intergenic | 55.0% | |
| GCAACTCTCGGGGAACTTGT+TGG | - | chr4.4:10177280-10177299 | MS.gene28100:CDS | 55.0% | |
| GCTATGACCGAGCTTCACCA+TGG | - | chr4.4:10175748-10175767 | MS.gene28100:intron | 55.0% | |
| TGTGGCTCCCAACAAAGCCA+AGG | - | chr4.4:10178959-10178978 | MS.gene28100:intron | 55.0% | |
| TTCAGAGCAGCTTGAGCGCT+TGG | + | chr4.4:10178870-10178889 | None:intergenic | 55.0% | |
| !! | AAGCGGTTCGGTGCAACTCT+CGG | - | chr4.4:10177268-10177287 | MS.gene28100:CDS | 55.0% |
| !! | ACTCTCGGGGAACTTGTTGG+TGG | - | chr4.4:10177283-10177302 | MS.gene28100:CDS | 55.0% |
| !! | CGGGGAACTTGTTGGTGGTA+GGG | - | chr4.4:10177288-10177307 | MS.gene28100:CDS | 55.0% |
| !! | GGGTAGGTAGTGGGTATGTG+AGG | - | chr4.4:10179174-10179193 | MS.gene28100:intron | 55.0% |
| !! | GTTACTTCGGGTTGGTCTCG+AGG | + | chr4.4:10177400-10177419 | None:intergenic | 55.0% |
| !! | TCGGGGAACTTGTTGGTGGT+AGG | - | chr4.4:10177287-10177306 | MS.gene28100:CDS | 55.0% |
| !! | TGGAGCTCTGAGATTCCGCT+CGG | - | chr4.4:10177159-10177178 | MS.gene28100:intron | 55.0% |
| AGCATAGCCATGGCCTCCAC+AGG | + | chr4.4:10177638-10177657 | None:intergenic | 60.0% | |
| AGCGCTTGGATCAGGACAGC+TGG | + | chr4.4:10178856-10178875 | None:intergenic | 60.0% | |
| AGGCATGTGGGGGTAACGTG+TGG | - | chr4.4:10176257-10176276 | MS.gene28100:CDS | 60.0% | |
| ATTGGCAATGCCGCCGTGCA+TGG | - | chr4.4:10176959-10176978 | MS.gene28100:intron | 60.0% | |
| CATGCACCAAAGTCCCCGAG+TGG | + | chr4.4:10178664-10178683 | None:intergenic | 60.0% | |
| GATGTCCATGCTCTCTCGGC+AGG | - | chr4.4:10177556-10177575 | MS.gene28100:CDS | 60.0% | |
| GCAGCTTGAGCGCTTGGATC+AGG | + | chr4.4:10178864-10178883 | None:intergenic | 60.0% | |
| GGCAAACTTGCCATGCACGG+CGG | + | chr4.4:10176972-10176991 | None:intergenic | 60.0% | |
| GGCATGTGGGGGTAACGTGT+GGG | - | chr4.4:10176258-10176277 | MS.gene28100:CDS | 60.0% | |
| TCAGACCTGCCGAGAGAGCA+TGG | + | chr4.4:10177564-10177583 | None:intergenic | 60.0% | |
| TGCTCTCTCGGCAGGTCTGA+AGG | - | chr4.4:10177564-10177583 | MS.gene28100:CDS | 60.0% | |
| ! | CACTCGGGGACTTTGGTGCA+TGG | - | chr4.4:10178662-10178681 | MS.gene28100:intron | 60.0% |
| !! | AGCGGTTCGGTGCAACTCTC+GGG | - | chr4.4:10177269-10177288 | MS.gene28100:CDS | 60.0% |
| AGGGAAGCCTGTGGAGGCCA+TGG | - | chr4.4:10177628-10177647 | MS.gene28100:CDS | 65.0% | |
| !! | GCGGTTCGGTGCAACTCTCG+GGG | - | chr4.4:10177270-10177289 | MS.gene28100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10175254 | 10179740 | 10175254 | ID=MS.gene28100 |
| chr4.4 | mRNA | 10175254 | 10179740 | 10175254 | ID=MS.gene28100.t1;Parent=MS.gene28100 |
| chr4.4 | exon | 10179424 | 10179740 | 10179424 | ID=MS.gene28100.t1.exon1;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10179424 | 10179740 | 10179424 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10179225 | 10179340 | 10179225 | ID=MS.gene28100.t1.exon2;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10179225 | 10179340 | 10179225 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10177253 | 10178133 | 10177253 | ID=MS.gene28100.t1.exon3;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10177253 | 10178133 | 10177253 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10176484 | 10176663 | 10176484 | ID=MS.gene28100.t1.exon4;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10176484 | 10176663 | 10176484 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10176224 | 10176390 | 10176224 | ID=MS.gene28100.t1.exon5;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10176224 | 10176390 | 10176224 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10176014 | 10176137 | 10176014 | ID=MS.gene28100.t1.exon6;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10176014 | 10176137 | 10176014 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| chr4.4 | exon | 10175254 | 10175412 | 10175254 | ID=MS.gene28100.t1.exon7;Parent=MS.gene28100.t1 |
| chr4.4 | CDS | 10175254 | 10175412 | 10175254 | ID=cds.MS.gene28100.t1;Parent=MS.gene28100.t1 |
| Gene Sequence |
| Protein sequence |
