AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57427

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57427.t1 MTR_8g090375 99.073 647 6 0 1 647 43 689 0.0 1343
MS.gene57427.t1 MTR_4g079290 37.815 595 331 12 49 631 97 664 1.91e-119 371
MS.gene57427.t1 MTR_5g012920 35.305 541 317 12 108 635 103 623 8.24e-88 288
MS.gene57427.t1 MTR_4g100640 35.250 539 320 13 108 635 103 623 6.76e-87 285
MS.gene57427.t1 MTR_4g100640 36.902 439 252 10 116 547 114 534 2.09e-74 248
MS.gene57427.t1 MTR_4g091440 83.529 85 9 1 555 639 11 90 4.92e-41 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57427.t1 AT5G65110 86.687 646 85 1 2 646 47 692 0.0 1194
MS.gene57427.t1 AT5G65110 86.555 595 79 1 2 595 47 641 0.0 1100
MS.gene57427.t1 AT1G06290 37.099 593 334 12 51 631 98 663 1.32e-113 355
MS.gene57427.t1 AT1G06310 36.425 593 338 12 51 631 98 663 3.13e-111 349
MS.gene57427.t1 AT2G35690 34.280 528 321 10 116 635 114 623 8.86e-81 269
MS.gene57427.t1 AT4G16760 34.137 539 326 12 108 635 90 610 2.09e-80 268
MS.gene57427.t1 AT4G16760 34.137 539 326 12 108 635 103 623 2.84e-80 268

Find 169 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCATCCAATTGAAATTT+AGG 0.172021 4.3:+9949017 None:intergenic
TTTATGCTCTTGATCGAATA+TGG 0.214273 4.3:-9948597 MS.gene57427:CDS
GGGTGGTTCTGTAATCAATT+TGG 0.224713 4.3:-9951556 MS.gene57427:CDS
CAATTCTCGGTGATTATCTT+TGG 0.226333 4.3:+9951826 None:intergenic
ATGCTTTCATTGTTCCAATA+AGG 0.244174 4.3:-9950445 MS.gene57427:CDS
TCTCTACTTCGTCAGCAATT+TGG 0.245338 4.3:-9950128 MS.gene57427:CDS
GTTTATTCTATGCAGTCTTT+GGG 0.259624 4.3:-9951577 MS.gene57427:intron
CCTTCCCACCTAGCAGTAAC+TGG 0.283092 4.3:+9949059 None:intergenic
TGGGTCTTCATATCCCTTAT+TGG 0.284324 4.3:+9950431 None:intergenic
CATCTCCAAAACGGTTTAGA+AGG 0.308919 4.3:+9950300 None:intergenic
TGCTTTCATTGTTCCAATAA+GGG 0.312257 4.3:-9950444 MS.gene57427:CDS
CACCTAGCAGTAACTGGATT+TGG 0.315018 4.3:+9949065 None:intergenic
TTAGATATTCTGACAGTTTG+TGG 0.323950 4.3:+9947969 None:intergenic
CTATGATGGTATTGATAACT+TGG 0.333947 4.3:-9951508 MS.gene57427:CDS
GACAACCTTCTAAACCGTTT+TGG 0.334424 4.3:-9950305 MS.gene57427:CDS
TTTATGTACCTTGGCTTTGT+TGG 0.336573 4.3:+9948534 None:intergenic
TTATGTACCTTGGCTTTGTT+GGG 0.344008 4.3:+9948535 None:intergenic
TATCTTTGGAAATTTCAATA+GGG 0.356130 4.3:+9951840 None:intergenic
GGTGGTTCTGTAATCAATTT+GGG 0.359274 4.3:-9951555 MS.gene57427:CDS
TCAAAATGGGTGTTCAATAT+AGG 0.359325 4.3:-9951676 MS.gene57427:intron
TGTAAGCGTCCTCAAGGTTT+CGG 0.365459 4.3:-9950171 MS.gene57427:CDS
AAGACCCATCAAACACTTCC+TGG 0.370749 4.3:-9950416 MS.gene57427:CDS
ATTGTGTATGAATCAGCTTT+TGG 0.372478 4.3:-9951807 MS.gene57427:CDS
TTATCTTTGGAAATTTCAAT+AGG 0.377781 4.3:+9951839 None:intergenic
TTGGCTCTTGTTAGAGAAGC+TGG 0.387447 4.3:-9951788 MS.gene57427:CDS
CAACACAGTTCTTCTTCAAC+AGG 0.389995 4.3:-9949781 MS.gene57427:intron
AGCGGTTCGGTGCAACTCTC+GGG 0.390305 4.3:-9950232 MS.gene57427:CDS
TCCCTCCTTGGAACTTTCTC+TGG 0.394208 4.3:+9949144 None:intergenic
GCAGCTTGAGCGCTTGGATC+AGG 0.395154 4.3:+9948640 None:intergenic
GCTGATTCATACACAATTCT+CGG 0.398942 4.3:+9951813 None:intergenic
TTCAGAGCAGCTTGAGCGCT+TGG 0.401209 4.3:+9948634 None:intergenic
CATTTGATAGCACCATCATT+TGG 0.402058 4.3:+9950569 None:intergenic
ACGGGATCCTAAATTTCAAT+TGG 0.403971 4.3:-9949024 MS.gene57427:CDS
CTCTCAGTACACACAATTTG+TGG 0.416549 4.3:-9947849 MS.gene57427:CDS
TCAAAACCACTCGGGGACTT+TGG 0.417831 4.3:-9948846 MS.gene57427:CDS
CCTTTGCAATATTCCTCACT+TGG 0.418205 4.3:+9947942 None:intergenic
TGTTGTCTCCTTCAAATGTC+TGG 0.418618 4.3:+9949799 None:intergenic
GGCCTCAATGGTGTTGATAA+TGG 0.420530 4.3:-9950362 MS.gene57427:CDS
CAATTCCAGGAAGTGTTTGA+TGG 0.423634 4.3:+9950411 None:intergenic
CTGGTATTGTTTCAAAAGAT+CGG 0.429824 4.3:+9949163 None:intergenic
ATTATTGATACTCCAAATGA+TGG 0.432472 4.3:-9950581 MS.gene57427:CDS
CAATCATGTATCTCAATTCC+AGG 0.438247 4.3:+9950398 None:intergenic
GAAATTTAGGATCCCGTAGA+TGG 0.439969 4.3:+9949030 None:intergenic
GCTCCTGATTGCTTGGCAAT+AGG 0.442770 4.3:+9947875 None:intergenic
ATGGTTATGCTGCTGTAAAT+CGG 0.444281 4.3:-9949854 MS.gene57427:CDS
ACAGATGCTGAGTGACTTTG+CGG 0.444457 4.3:+9949896 None:intergenic
TTTGGAGATGTTTCTCGTGA+TGG 0.445538 4.3:-9950287 MS.gene57427:CDS
TATGTCGCTTGGAATCAAAA+TGG 0.447452 4.3:-9951690 MS.gene57427:CDS
GCACCTATTGCCAAGCAATC+AGG 0.452909 4.3:-9947878 MS.gene57427:CDS
AAGCGGTTCGGTGCAACTCT+CGG 0.453349 4.3:-9950233 MS.gene57427:CDS
TCTCAGTACACACAATTTGT+GGG 0.455819 4.3:-9947848 MS.gene57427:CDS
GGTGCCCTTGTTACATGATC+GGG 0.458693 4.3:+9947896 None:intergenic
CCTTCGGTTAATAAGCGGTT+CGG 0.458831 4.3:-9950245 MS.gene57427:CDS
TGCAAAAGGAGTTTCTGATA+TGG 0.461080 4.3:-9950474 MS.gene57427:CDS
GCAACTCTCGGGGAACTTGT+TGG 0.464445 4.3:-9950221 MS.gene57427:CDS
CGGGGAACTTGTTGGTGGTA+GGG 0.466679 4.3:-9950213 MS.gene57427:CDS
TAGTCGAGAATCGTTACTTC+GGG 0.467616 4.3:+9950092 None:intergenic
TGCTCTCTCGGCAGGTCTGA+AGG 0.474202 4.3:-9949937 MS.gene57427:CDS
TCCTCTCATGTAACCGGAGA+GGG 0.480165 4.3:+9951925 None:intergenic
ATAAACAGGTTCAAATGTGC+AGG 0.483681 4.3:-9950648 MS.gene57427:intron
GATGTCCATGCTCTCTCGGC+AGG 0.488038 4.3:-9949945 MS.gene57427:CDS
TATGCTGCTGTAAATCGGTT+TGG 0.492200 4.3:-9949849 MS.gene57427:CDS
TTACCTAATTATGATGCAAA+AGG 0.492396 4.3:-9950488 MS.gene57427:CDS
TTGGAGATGTTTCTCGTGAT+GGG 0.492414 4.3:-9950286 MS.gene57427:CDS
GTACACAAGTACGCTTCCTT+CGG 0.492471 4.3:-9950261 MS.gene57427:CDS
CATGATTGTGGTCATAAAGT+TGG 0.493032 4.3:-9950383 MS.gene57427:CDS
TCGGGGAACTTGTTGGTGGT+AGG 0.493211 4.3:-9950214 MS.gene57427:CDS
ATCTTTGGAAATTTCAATAG+GGG 0.494569 4.3:+9951841 None:intergenic
AAAATAGCAAAATACTTAGC+AGG 0.495694 4.3:+9951734 None:intergenic
GGTCATAAAGTTGGCCTCAA+TGG 0.500739 4.3:-9950374 MS.gene57427:CDS
GGGAAGGTGAAGACCATCTA+CGG 0.502020 4.3:-9949043 MS.gene57427:CDS
GTTACTTCGGGTTGGTCTCG+AGG 0.502846 4.3:+9950104 None:intergenic
TCAATAGGGGTTAGAAGATG+TGG 0.503081 4.3:+9951854 None:intergenic
TAAGCTTATGCTGATGAGAC+TGG 0.505882 4.3:+9950069 None:intergenic
CTACCGTAATGTTGATTATG+TGG 0.509887 4.3:-9948560 MS.gene57427:CDS
TGCAGATGTCCATGCTCTCT+CGG 0.513801 4.3:-9949949 MS.gene57427:CDS
AGAATATCTGATGGCAATAG+TGG 0.520586 4.3:+9950148 None:intergenic
AGAGTAAGCTCCTGATTGCT+TGG 0.521456 4.3:+9947868 None:intergenic
CATAAGGACAAGTACTATGA+TGG 0.522129 4.3:-9951522 MS.gene57427:CDS
GCATAAGCTTATGCCCATGC+TGG 0.522352 4.3:-9950057 MS.gene57427:CDS
GAACTTGTTGGTGGTAGGGT+AGG 0.522927 4.3:-9950209 MS.gene57427:CDS
CGAAAGCACTCAAAACCACT+CGG 0.525809 4.3:-9948855 MS.gene57427:CDS
TTTGGGAACACAGAAACATA+AGG 0.529122 4.3:-9951538 MS.gene57427:CDS
CACTCGGGGACTTTGGTGCA+TGG 0.531305 4.3:-9948839 MS.gene57427:CDS
TCAGACCTGCCGAGAGAGCA+TGG 0.532410 4.3:+9949940 None:intergenic
CAAAGTCACTCAGCATCTGT+AGG 0.533032 4.3:-9949893 MS.gene57427:CDS
TGCATAAGTTGAAGCCAGCA+TGG 0.533986 4.3:+9950043 None:intergenic
TTCTTCTGTAAGCGTCCTCA+AGG 0.534074 4.3:-9950177 MS.gene57427:CDS
AATTCCAGGAAGTGTTTGAT+GGG 0.535427 4.3:+9950412 None:intergenic
AGCATAACCATGGCCTCCAC+AGG 0.535510 4.3:+9949866 None:intergenic
AGGGAAGCCTGTGGAGGCCA+TGG 0.536243 4.3:-9949873 MS.gene57427:CDS
GAGCCACATAATCAACATTA+CGG 0.536866 4.3:+9948557 None:intergenic
AGGTGCCCTTGTTACATGAT+CGG 0.538269 4.3:+9947895 None:intergenic
CCAGTTACTGCTAGGTGGGA+AGG 0.538816 4.3:-9949059 MS.gene57427:CDS
CTGTGACAGATAAGTACTCA+TGG 0.539434 4.3:+9949088 None:intergenic
CAAAGGTGGCGAGAGTTTGA+AGG 0.542136 4.3:+9950624 None:intergenic
TCACTGCTAAAGTCCCTCCT+TGG 0.543944 4.3:+9949132 None:intergenic
GCAAAAGGAGTTTCTGATAT+GGG 0.548158 4.3:-9950473 MS.gene57427:CDS
CACGAGAAACATCTCCAAAA+CGG 0.548477 4.3:+9950291 None:intergenic
ATTCTATGCAGTCTTTGGGG+TGG 0.550468 4.3:-9951573 MS.gene57427:intron
ATAATAAATTCATCGGTGAT+CGG 0.551438 4.3:+9950599 None:intergenic
TATGAAGTAATCTAGACGTT+CGG 0.553324 4.3:+9948895 None:intergenic
ATGTCGCTTGGAATCAAAAT+GGG 0.554551 4.3:-9951689 MS.gene57427:CDS
TTTCTCCACTAAGTTTGTTG+TGG 0.555388 4.3:+9950010 None:intergenic
GTAGTCGAGAATCGTTACTT+CGG 0.559361 4.3:+9950091 None:intergenic
GGTAGTGTTGATATGTCGCT+TGG 0.560567 4.3:-9951701 MS.gene57427:CDS
TTCATCGGTGATCGGATCAA+AGG 0.561998 4.3:+9950607 None:intergenic
ATTGGCAATGCCGCCATGCA+TGG 0.563361 4.3:-9950542 MS.gene57427:CDS
GATCGAATATGGAATGACAT+TGG 0.564847 4.3:-9948586 MS.gene57427:CDS
CGAGAATCGTTACTTCGGGT+TGG 0.565234 4.3:+9950096 None:intergenic
GGTGCTATCAAATGGTGGAT+TGG 0.567024 4.3:-9950560 MS.gene57427:CDS
TTTATTCTATGCAGTCTTTG+GGG 0.568032 4.3:-9951576 MS.gene57427:intron
CGCTTCCTTCGGTTAATAAG+CGG 0.569278 4.3:-9950250 MS.gene57427:CDS
TCCCTCTCCGGTTACATGAG+AGG 0.572675 4.3:-9951926 MS.gene57427:CDS
ATCAAGAGCATAAAGATCGC+AGG 0.572870 4.3:+9948606 None:intergenic
AAATCCAGTTACTGCTAGGT+GGG 0.573812 4.3:-9949063 MS.gene57427:CDS
GTGGACACAAATTCCCTCTC+CGG 0.574120 4.3:-9951938 MS.gene57427:CDS
GAAAGCACTCAAAACCACTC+GGG 0.574745 4.3:-9948854 MS.gene57427:CDS
TCGGTCATAGCAAAACAACC+TGG 0.575066 4.3:+9951480 None:intergenic
AAAGTCACTCAGCATCTGTA+GGG 0.575237 4.3:-9949892 MS.gene57427:CDS
AGTATCAATAATAAATTCAT+CGG 0.575429 4.3:+9950592 None:intergenic
AGATGGAAAATTGCAGTCGC+GGG 0.576755 4.3:-9951973 MS.gene57427:CDS
CAAATGATGGTGCTATCAAA+TGG 0.582753 4.3:-9950568 MS.gene57427:CDS
GAAATTACCATGGTGAAGCT+CGG 0.587206 4.3:+9951461 None:intergenic
CAAATCCAGTTACTGCTAGG+TGG 0.589069 4.3:-9949064 MS.gene57427:CDS
CCAAGTGAGGAATATTGCAA+AGG 0.590762 4.3:-9947942 MS.gene57427:CDS
AATATCTAAGTTTCCAAGTG+AGG 0.594631 4.3:-9947955 MS.gene57427:CDS
GGAAGGTGAAGACCATCTAC+GGG 0.594722 4.3:-9949042 MS.gene57427:CDS
ATTGATAACTTGGATTACCC+AGG 0.595258 4.3:-9951498 MS.gene57427:CDS
ATCTTCCCGATCATGTAACA+AGG 0.597775 4.3:-9947901 MS.gene57427:CDS
CTCCATTATCAACACCATTG+AGG 0.603969 4.3:+9950360 None:intergenic
GCATAAGTTGAAGCCAGCAT+GGG 0.604077 4.3:+9950044 None:intergenic
CGCTTACAGAAGAATATGCA+AGG 0.604155 4.3:+9950186 None:intergenic
ACTCTCGGGGAACTTGTTGG+TGG 0.607843 4.3:-9950218 MS.gene57427:CDS
CACATAATCAACATTACGGT+AGG 0.614344 4.3:+9948561 None:intergenic
TAAATCGGTTTGGTTCCTTG+AGG 0.616748 4.3:-9949839 MS.gene57427:CDS
ATCGGTGATCGGATCAAAGG+TGG 0.617655 4.3:+9950610 None:intergenic
TGTGGCAAACTTGCCATGCA+TGG 0.619619 4.3:+9950529 None:intergenic
GAGATGGAAAATTGCAGTCG+CGG 0.623955 4.3:-9951974 MS.gene57427:CDS
AATGTCATGATCATTCCTCA+AGG 0.624425 4.3:+9949824 None:intergenic
TGGAGCTCTTAGATTCCGCT+CGG 0.628031 4.3:-9950342 MS.gene57427:CDS
CAATAGTGGCCGAAACCTTG+AGG 0.628582 4.3:+9950162 None:intergenic
AGCCAAATCCAGTTACTGCT+AGG 0.628605 4.3:-9949067 MS.gene57427:CDS
CGGTCATAGCAAAACAACCT+GGG 0.629589 4.3:+9951481 None:intergenic
ATCTGTAGGGAAGCCTGTGG+AGG 0.630281 4.3:-9949879 MS.gene57427:CDS
TCATTAACAACATAATGAAG+AGG 0.630936 4.3:+9951758 None:intergenic
GCGGTTCGGTGCAACTCTCG+GGG 0.635090 4.3:-9950231 MS.gene57427:CDS
ACCAGAGAAAGTTCCAAGGA+GGG 0.638300 4.3:-9949145 MS.gene57427:CDS
AAAGCACTCAAAACCACTCG+GGG 0.639876 4.3:-9948853 MS.gene57427:CDS
TAAACAGGTTCAAATGTGCA+GGG 0.642404 4.3:-9950647 MS.gene57427:intron
CGGTTTAGAAGGTTGTCTCG+AGG 0.643754 4.3:+9950311 None:intergenic
GCTATGACCGAGCTTCACCA+TGG 0.647722 4.3:-9951468 MS.gene57427:intron
GAGGGACTTTAGCAGTGACA+TGG 0.650482 4.3:-9949127 MS.gene57427:CDS
TTCCTCTCATGTAACCGGAG+AGG 0.655151 4.3:+9951924 None:intergenic
CCGAACCGCTTATTAACCGA+AGG 0.655393 4.3:+9950245 None:intergenic
CAATACCAGAGAAAGTTCCA+AGG 0.658899 4.3:-9949149 MS.gene57427:CDS
AATTCATTGAAGCTGTGCAG+AGG 0.660461 4.3:-9948752 MS.gene57427:intron
TGTGGCTCCCAACAAAGCCA+AGG 0.662996 4.3:-9948542 MS.gene57427:intron
ACGAAGTAGAGAATATCTGA+TGG 0.663385 4.3:+9950139 None:intergenic
GATTTACAGCAGCATAACCA+TGG 0.669211 4.3:+9949856 None:intergenic
TCGCGGGAAGAAATTAATCG+TGG 0.674882 4.3:-9951957 MS.gene57427:CDS
CTCGAGGAATTCTCACCGAG+CGG 0.676358 4.3:+9950327 None:intergenic
ATGATGGTGCTATCAAATGG+TGG 0.677203 4.3:-9950565 MS.gene57427:CDS
GGAATTGAGATACATGATTG+TGG 0.680398 4.3:-9950395 MS.gene57427:CDS
GGCAAACTTGCCATGCATGG+CGG 0.690153 4.3:+9950532 None:intergenic
AGCATCTGTAGGGAAGCCTG+TGG 0.690374 4.3:-9949882 MS.gene57427:CDS
TACCAGAGAAAGTTCCAAGG+AGG 0.691237 4.3:-9949146 MS.gene57427:CDS
CATGCACCAAAGTCCCCGAG+TGG 0.710764 4.3:+9948840 None:intergenic
TCTTCCCGATCATGTAACAA+GGG 0.717458 4.3:-9947900 MS.gene57427:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAATAATAGATAAATAA+AGG - chr4.3:9950281-9950300 MS.gene57427:CDS 10.0%
!!! GTTTTTTTTTTTTTTTCATT+TGG - chr4.3:9948159-9948178 MS.gene57427:intron 10.0%
!!! TATTTGTTTTTATCTTAATT+GGG - chr4.3:9949060-9949079 MS.gene57427:CDS 10.0%
!! AGTATCAATAATAAATTCAT+CGG + chr4.3:9949220-9949239 None:intergenic 15.0%
!!! ATGAAATCTTTTGAAAATTT+TGG + chr4.3:9950424-9950443 None:intergenic 15.0%
!!! CTATTTGTTTTTATCTTAAT+TGG - chr4.3:9949059-9949078 MS.gene57427:CDS 15.0%
!!! TATAATTTTTTTGTTTAGCA+AGG + chr4.3:9950187-9950206 None:intergenic 15.0%
!! ATCAATTATATGTTAGAGAA+AGG + chr4.3:9951095-9951114 None:intergenic 20.0%
!! TCGTGTTCATAAAAATATAA+AGG - chr4.3:9948838-9948857 MS.gene57427:CDS 20.0%
!! TGTGAGATAAAATTCAAAAT+GGG - chr4.3:9948965-9948984 MS.gene57427:intron 20.0%
!! TTGTGAGATAAAATTCAAAA+TGG - chr4.3:9948964-9948983 MS.gene57427:intron 20.0%
!!! AAGAAATTTTTTATGTACCT+TGG + chr4.3:9951287-9951306 None:intergenic 20.0%
!!! AATTTTTCCTTTACAAATGA+AGG - chr4.3:9950617-9950636 MS.gene57427:CDS 20.0%
!!! ATAAAAATATAAAGGCATGT+GGG - chr4.3:9948846-9948865 MS.gene57427:CDS 20.0%
!!! TATCTTTGGAAATTTCAATA+GGG + chr4.3:9947972-9947991 None:intergenic 20.0%
!!! TCATTGATTTATGTATTCAT+TGG + chr4.3:9951355-9951374 None:intergenic 20.0%
!!! TGAAAATTTTGGATTTCATT+TGG + chr4.3:9950413-9950432 None:intergenic 20.0%
!!! TTATCTTTGGAAATTTCAAT+AGG + chr4.3:9947973-9947992 None:intergenic 20.0%
!!! TTTTGTTTTGTTTTGATGAA+TGG - chr4.3:9948210-9948229 MS.gene57427:intron 20.0%
! AAAATAGCAAAATACTTAGC+AGG + chr4.3:9948078-9948097 None:intergenic 25.0%
! AAAGCTAATAACTTCTATGA+GGG - chr4.3:9951408-9951427 MS.gene57427:intron 25.0%
! AACTATTACTAAAGCTTCTT+TGG - chr4.3:9950368-9950387 MS.gene57427:CDS 25.0%
! ATAATAAATTCATCGGTGAT+CGG + chr4.3:9949213-9949232 None:intergenic 25.0%
! ATTATTGATACTCCAAATGA+TGG - chr4.3:9949228-9949247 MS.gene57427:intron 25.0%
! CAACTATTAATTTATGACTG+TGG - chr4.3:9950145-9950164 MS.gene57427:CDS 25.0%
! GCTTTAGTAATAGTTAATCT+TGG + chr4.3:9950363-9950382 None:intergenic 25.0%
! GTTAATCTTGGAATATATCA+AGG + chr4.3:9950351-9950370 None:intergenic 25.0%
! TATCTTAATTGGGTTTCTAT+TGG - chr4.3:9949070-9949089 MS.gene57427:CDS 25.0%
! TCATTAACAACATAATGAAG+AGG + chr4.3:9948054-9948073 None:intergenic 25.0%
! TTACCTAATTATGATGCAAA+AGG - chr4.3:9949321-9949340 MS.gene57427:intron 25.0%
! TTTGGTAGAGTAATTTAAAG+CGG - chr4.3:9948917-9948936 MS.gene57427:intron 25.0%
!! AAAGCATCCAATTGAAATTT+AGG + chr4.3:9950795-9950814 None:intergenic 25.0%
!! AATGGTATTTAGAATCAAAG+GGG + chr4.3:9950324-9950343 None:intergenic 25.0%
!! AATTTTATCTCACAATCAGA+TGG + chr4.3:9948959-9948978 None:intergenic 25.0%
!! AATTTTGTGAAGTGAAAAGT+GGG - chr4.3:9948815-9948834 MS.gene57427:CDS 25.0%
!! AGAATGGTATTTAGAATCAA+AGG + chr4.3:9950326-9950345 None:intergenic 25.0%
!! ATCTTTGGAAATTTCAATAG+GGG + chr4.3:9947971-9947990 None:intergenic 25.0%
!! CATAAAAATATAAAGGCATG+TGG - chr4.3:9948845-9948864 MS.gene57427:CDS 25.0%
!! GAATGGTATTTAGAATCAAA+GGG + chr4.3:9950325-9950344 None:intergenic 25.0%
!! TAAAAATATAAAGGCATGTG+GGG - chr4.3:9948847-9948866 MS.gene57427:CDS 25.0%
!!! CAATTTTCCCAATTTTAACA+CGG - chr4.3:9951126-9951145 MS.gene57427:intron 25.0%
!!! TGCTAAGTATTTTGCTATTT+TGG - chr4.3:9948077-9948096 MS.gene57427:intron 25.0%
!!! TTTCTTTTTTGTGCATAAAC+AGG - chr4.3:9949147-9949166 MS.gene57427:CDS 25.0%
AAATAGGCCGTGTTAAAATT+GGG + chr4.3:9951136-9951155 None:intergenic 30.0%
AAGGTGTAGATTATAGAACA+AGG + chr4.3:9950216-9950235 None:intergenic 30.0%
AATATCTAAGTTTCCAAGTG+AGG - chr4.3:9951854-9951873 MS.gene57427:CDS 30.0%
ACAGACTTGTGAAACTATTT+GGG - chr4.3:9948419-9948438 MS.gene57427:intron 30.0%
AGAATAGTGAACAAATCATC+AGG - chr4.3:9950250-9950269 MS.gene57427:CDS 30.0%
AGGAATAACTAGTAAAAACC+AGG - chr4.3:9951446-9951465 MS.gene57427:intron 30.0%
AGTGATTTAGAAATGTGTAC+CGG + chr4.3:9949120-9949139 None:intergenic 30.0%
ATACATTCTTGGCAATTCTA+AGG - chr4.3:9948782-9948801 MS.gene57427:CDS 30.0%
ATATGTTAGAGAAAGGAACT+AGG + chr4.3:9951088-9951107 None:intergenic 30.0%
ATGCTTTCATTGTTCCAATA+AGG - chr4.3:9949364-9949383 MS.gene57427:intron 30.0%
ATGTTGCAACTAACTCAAAA+TGG + chr4.3:9948887-9948906 None:intergenic 30.0%
ATTTAACCATGTAGGATCAT+AGG - chr4.3:9950480-9950499 MS.gene57427:CDS 30.0%
CTGGTATTGTTTCAAAAGAT+CGG + chr4.3:9950649-9950668 None:intergenic 30.0%
GAAAGCTAATAACTTCTATG+AGG - chr4.3:9951407-9951426 MS.gene57427:intron 30.0%
GAATAGTGAACAAATCATCA+GGG - chr4.3:9950251-9950270 MS.gene57427:CDS 30.0%
GGAATAACTAGTAAAAACCA+GGG - chr4.3:9951447-9951466 MS.gene57427:intron 30.0%
GGAATATATCAAGGTTAGAA+TGG + chr4.3:9950342-9950361 None:intergenic 30.0%
GTTTATTCTATGCAGTCTTT+GGG - chr4.3:9948232-9948251 MS.gene57427:intron 30.0%
TACAGACTTGTGAAACTATT+TGG - chr4.3:9948418-9948437 MS.gene57427:intron 30.0%
TATGAAGTAATCTAGACGTT+CGG + chr4.3:9950917-9950936 None:intergenic 30.0%
TCAAAATGGGTGTTCAATAT+AGG - chr4.3:9948133-9948152 MS.gene57427:intron 30.0%
TCATTTGCATTTAACCATGT+AGG - chr4.3:9950472-9950491 MS.gene57427:CDS 30.0%
TCTACACTCTTAACATCAAT+TGG + chr4.3:9948743-9948762 None:intergenic 30.0%
TGCTTTCATTGTTCCAATAA+GGG - chr4.3:9949365-9949384 MS.gene57427:intron 30.0%
TGTAGTTATCTATGATCTGA+TGG - chr4.3:9950107-9950126 MS.gene57427:CDS 30.0%
TTAGATATTCTGACAGTTTG+TGG + chr4.3:9951843-9951862 None:intergenic 30.0%
TTATAGGAGCAATACATTCT+TGG - chr4.3:9948771-9948790 MS.gene57427:CDS 30.0%
TTATAGTGTTAAAGAGAGCA+AGG + chr4.3:9951774-9951793 None:intergenic 30.0%
TTTATGCTCTTGATCGAATA+TGG - chr4.3:9951212-9951231 MS.gene57427:intron 30.0%
TTTATTCTATGCAGTCTTTG+GGG - chr4.3:9948233-9948252 MS.gene57427:intron 30.0%
! AAAAATATAAAGGCATGTGG+GGG - chr4.3:9948848-9948867 MS.gene57427:CDS 30.0%
! AAAGATTTTCACTAGCCAAA+TGG + chr4.3:9951675-9951694 None:intergenic 30.0%
! ACCTATGTTTTCCTTCTTTT+TGG + chr4.3:9951577-9951596 None:intergenic 30.0%
! ACTCCTTTTGCATCATAATT+AGG + chr4.3:9949327-9949346 None:intergenic 30.0%
! AGCTGCAATTTTACAACTTT+TGG - chr4.3:9950530-9950549 MS.gene57427:CDS 30.0%
! ATTGTGTATGAATCAGCTTT+TGG - chr4.3:9948002-9948021 MS.gene57427:intron 30.0%
! CAATTTTGTGAAGTGAAAAG+TGG - chr4.3:9948814-9948833 MS.gene57427:CDS 30.0%
! CCTATGTTTTCCTTCTTTTT+GGG + chr4.3:9951576-9951595 None:intergenic 30.0%
! CTGAGTTGAATTTGAGATTT+AGG - chr4.3:9951741-9951760 MS.gene57427:CDS 30.0%
! GCTGCAATTTTACAACTTTT+GGG - chr4.3:9950531-9950550 MS.gene57427:CDS 30.0%
! TATTGATTATGAGTGCCATT+TGG - chr4.3:9951657-9951676 MS.gene57427:intron 30.0%
! TGATGTTAAGAGTGTAGAAT+GGG - chr4.3:9948745-9948764 MS.gene57427:intron 30.0%
! TTGATGTTAAGAGTGTAGAA+TGG - chr4.3:9948744-9948763 MS.gene57427:intron 30.0%
!! CTATGATGGTATTGATAACT+TGG - chr4.3:9948301-9948320 MS.gene57427:intron 30.0%
!! GCTAGTGAAAATCTTTGTTT+TGG - chr4.3:9951679-9951698 MS.gene57427:CDS 30.0%
!! GTTCTTAAAGTGTTGTCATT+AGG - chr4.3:9948700-9948719 MS.gene57427:intron 30.0%
AAATTTCCAACAGAGACACT+AGG + chr4.3:9949011-9949030 None:intergenic 35.0%
AATGTCATGATCATTCCTCA+AGG + chr4.3:9949988-9950007 None:intergenic 35.0%
ACGAAGTAGAGAATATCTGA+TGG + chr4.3:9949673-9949692 None:intergenic 35.0%
ACGGGATCCTAAATTTCAAT+TGG - chr4.3:9950785-9950804 MS.gene57427:intron 35.0%
AGAATATCTGATGGCAATAG+TGG + chr4.3:9949664-9949683 None:intergenic 35.0%
AGCTTTCATTATGAGCTATC+AGG + chr4.3:9951394-9951413 None:intergenic 35.0%
AGTGTCTCTGTTGGAAATTT+AGG - chr4.3:9949011-9949030 MS.gene57427:intron 35.0%
ATAAACAGGTTCAAATGTGC+AGG - chr4.3:9949161-9949180 MS.gene57427:CDS 35.0%
ATGATGTTTCTCCATTTCAC+AGG - chr4.3:9951813-9951832 MS.gene57427:CDS 35.0%
ATGGTTATGCTGCTGTAAAT+CGG - chr4.3:9949955-9949974 MS.gene57427:CDS 35.0%
ATTTCGAGCACGTAAGTAAT+AGG - chr4.3:9950590-9950609 MS.gene57427:CDS 35.0%
CAATCATGTATCTCAATTCC+AGG + chr4.3:9949414-9949433 None:intergenic 35.0%
CAATTCTCGGTGATTATCTT+TGG + chr4.3:9947986-9948005 None:intergenic 35.0%
CACATAATCAACATTACGGT+AGG + chr4.3:9951251-9951270 None:intergenic 35.0%
CATAAGGACAAGTACTATGA+TGG - chr4.3:9948287-9948306 MS.gene57427:intron 35.0%
CATGATTGTGGTCATAAAGT+TGG - chr4.3:9949426-9949445 MS.gene57427:intron 35.0%
CCCAAAAAGAAGGAAAACAT+AGG - chr4.3:9951573-9951592 MS.gene57427:intron 35.0%
GAAATAGGCCGTGTTAAAAT+TGG + chr4.3:9951137-9951156 None:intergenic 35.0%
GAGCCACATAATCAACATTA+CGG + chr4.3:9951255-9951274 None:intergenic 35.0%
GATCATAGATAACTACAGTC+TGG + chr4.3:9950104-9950123 None:intergenic 35.0%
GATCGAATATGGAATGACAT+TGG - chr4.3:9951223-9951242 MS.gene57427:intron 35.0%
GCAAAAGGAGTTTCTGATAT+GGG - chr4.3:9949336-9949355 MS.gene57427:intron 35.0%
GGAATTGAGATACATGATTG+TGG - chr4.3:9949414-9949433 MS.gene57427:intron 35.0%
GGTTTATTCTATGCAGTCTT+TGG - chr4.3:9948231-9948250 MS.gene57427:intron 35.0%
GTGATTTAGAAATGTGTACC+GGG + chr4.3:9949119-9949138 None:intergenic 35.0%
TAAACAGGTTCAAATGTGCA+GGG - chr4.3:9949162-9949181 MS.gene57427:CDS 35.0%
TAACTAGTAAAAACCAGGGT+AGG - chr4.3:9951451-9951470 MS.gene57427:intron 35.0%
TATGTGAGGGACAACTATAA+TGG - chr4.3:9951481-9951500 MS.gene57427:CDS 35.0%
TCGGTTTAGCAACTTCTATA+GGG - chr4.3:9948673-9948692 MS.gene57427:intron 35.0%
TCTCAGTACACACAATTTGT+GGG - chr4.3:9951961-9951980 MS.gene57427:CDS 35.0%
TGCAAAAGGAGTTTCTGATA+TGG - chr4.3:9949335-9949354 MS.gene57427:intron 35.0%
TGCAACATCATTGTCGAATT+TGG - chr4.3:9948899-9948918 MS.gene57427:CDS 35.0%
TGCTTTCTTACCCAAAAAGA+AGG - chr4.3:9951563-9951582 MS.gene57427:CDS 35.0%
TTAGCAACTTCTATAGGGTT+GGG - chr4.3:9948678-9948697 MS.gene57427:intron 35.0%
TTATTAAGTGCCTACAGCAT+AGG + chr4.3:9948594-9948613 None:intergenic 35.0%
TTTAGCAACTTCTATAGGGT+TGG - chr4.3:9948677-9948696 MS.gene57427:intron 35.0%
TTTCATTTGGAGAGTAGCAA+AGG + chr4.3:9950400-9950419 None:intergenic 35.0%
TTTGGGAACACAGAAACATA+AGG - chr4.3:9948271-9948290 MS.gene57427:intron 35.0%
! AAGTGTTGTCATTAGGTTCA+TGG - chr4.3:9948707-9948726 MS.gene57427:intron 35.0%
! AGTGTAGAATGGGTTCTTAT+AGG - chr4.3:9948755-9948774 MS.gene57427:CDS 35.0%
! ATGTCGCTTGGAATCAAAAT+GGG - chr4.3:9948120-9948139 MS.gene57427:intron 35.0%
! ATTGATAACTTGGATTACCC+AGG - chr4.3:9948311-9948330 MS.gene57427:intron 35.0%
! CATTTGATAGCACCATCATT+TGG + chr4.3:9949243-9949262 None:intergenic 35.0%
! CTACCGTAATGTTGATTATG+TGG - chr4.3:9951249-9951268 MS.gene57427:intron 35.0%
! GACATTTTCCAGACATTTGA+AGG - chr4.3:9950002-9950021 MS.gene57427:CDS 35.0%
! GCTGATTCATACACAATTCT+CGG + chr4.3:9947999-9948018 None:intergenic 35.0%
! GGTGGTTCTGTAATCAATTT+GGG - chr4.3:9948254-9948273 MS.gene57427:intron 35.0%
! GTGTACCTTTCCTTTGTTTA+TGG - chr4.3:9950506-9950525 MS.gene57427:CDS 35.0%
! TATGTCGCTTGGAATCAAAA+TGG - chr4.3:9948119-9948138 MS.gene57427:intron 35.0%
! TGAGCTTTGTCTTATTCTGT+CGG - chr4.3:9948654-9948673 MS.gene57427:intron 35.0%
! TTTTGCCACAACAAACTTAG+TGG - chr4.3:9949794-9949813 MS.gene57427:CDS 35.0%
!! AATTCCAGGAAGTGTTTGAT+GGG + chr4.3:9949400-9949419 None:intergenic 35.0%
!! CAAATGATGGTGCTATCAAA+TGG - chr4.3:9949241-9949260 MS.gene57427:intron 35.0%
!! TTATGTACCTTGGCTTTGTT+GGG + chr4.3:9951277-9951296 None:intergenic 35.0%
!! TTTATGTACCTTGGCTTTGT+TGG + chr4.3:9951278-9951297 None:intergenic 35.0%
!! TTTCTCCACTAAGTTTGTTG+TGG + chr4.3:9949802-9949821 None:intergenic 35.0%
!! TTTTACAACTTTTGGGTGTG+CGG - chr4.3:9950538-9950557 MS.gene57427:CDS 35.0%
!!! GTTATTCCTGCTTTTTAGAG+TGG + chr4.3:9951435-9951454 None:intergenic 35.0%
!!! TTTGCTATTTTGGAAGCTGT+TGG - chr4.3:9948087-9948106 MS.gene57427:intron 35.0%
AAAGTCACTCAGCATCTGTA+GGG - chr4.3:9949917-9949936 MS.gene57427:CDS 40.0%
AAATCCAGTTACTGCTAGGT+GGG - chr4.3:9950746-9950765 MS.gene57427:intron 40.0%
AATTCATTGAAGCTGTGCAG+AGG - chr4.3:9951057-9951076 MS.gene57427:intron 40.0%
AGCTGCCATAAACAAAGGAA+AGG + chr4.3:9950514-9950533 None:intergenic 40.0%
ATCTTCCCGATCATGTAACA+AGG - chr4.3:9951908-9951927 MS.gene57427:CDS 40.0%
ATTCTCCACAGTCTACACTA+AGG + chr4.3:9950235-9950254 None:intergenic 40.0%
ATTGCAGCTGCCATAAACAA+AGG + chr4.3:9950519-9950538 None:intergenic 40.0%
CAAATTCAACTCAGTGCTTC+TGG + chr4.3:9951735-9951754 None:intergenic 40.0%
CAACACAGTTCTTCTTCAAC+AGG - chr4.3:9950028-9950047 MS.gene57427:CDS 40.0%
CAATACCAGAGAAAGTTCCA+AGG - chr4.3:9950660-9950679 MS.gene57427:intron 40.0%
CAATTCAAACAAGCTCAGAG+AGG + chr4.3:9948373-9948392 None:intergenic 40.0%
CACGAGAAACATCTCCAAAA+CGG + chr4.3:9949521-9949540 None:intergenic 40.0%
CACTTTCCTATGATCCTACA+TGG + chr4.3:9950489-9950508 None:intergenic 40.0%
CATCTCCAAAACGGTTTAGA+AGG + chr4.3:9949512-9949531 None:intergenic 40.0%
CCAAGTGAGGAATATTGCAA+AGG - chr4.3:9951867-9951886 MS.gene57427:CDS 40.0%
CCTTTGCAATATTCCTCACT+TGG + chr4.3:9951870-9951889 None:intergenic 40.0%
CGCTTACAGAAGAATATGCA+AGG + chr4.3:9949626-9949645 None:intergenic 40.0%
CTCCATTATCAACACCATTG+AGG + chr4.3:9949452-9949471 None:intergenic 40.0%
CTCTCAGTACACACAATTTG+TGG - chr4.3:9951960-9951979 MS.gene57427:CDS 40.0%
CTGTGACAGATAAGTACTCA+TGG + chr4.3:9950724-9950743 None:intergenic 40.0%
CTTCAACCTAGCAAAAACTG+TGG + chr4.3:9949301-9949320 None:intergenic 40.0%
GAAATTACCATGGTGAAGCT+CGG + chr4.3:9948351-9948370 None:intergenic 40.0%
GATTTACAGCAGCATAACCA+TGG + chr4.3:9949956-9949975 None:intergenic 40.0%
GCTGCAACCTTCATTTGTAA+AGG + chr4.3:9950627-9950646 None:intergenic 40.0%
GTAGTCGAGAATCGTTACTT+CGG + chr4.3:9949721-9949740 None:intergenic 40.0%
GTTGGAAATTTAGGTGCACT+GGG - chr4.3:9949020-9949039 MS.gene57427:CDS 40.0%
TAAAAACCAGGGTAGGTAGT+GGG - chr4.3:9951458-9951477 MS.gene57427:intron 40.0%
TAAGCTTATGCTGATGAGAC+TGG + chr4.3:9949743-9949762 None:intergenic 40.0%
TAGTCGAGAATCGTTACTTC+GGG + chr4.3:9949720-9949739 None:intergenic 40.0%
TATGCTGCTGTAAATCGGTT+TGG - chr4.3:9949960-9949979 MS.gene57427:CDS 40.0%
TCAATAGGGGTTAGAAGATG+TGG + chr4.3:9947958-9947977 None:intergenic 40.0%
TCTCTACTTCGTCAGCAATT+TGG - chr4.3:9949681-9949700 MS.gene57427:intron 40.0%
TCTTCCCGATCATGTAACAA+GGG - chr4.3:9951909-9951928 MS.gene57427:CDS 40.0%
TGGGTCTTCATATCCCTTAT+TGG + chr4.3:9949381-9949400 None:intergenic 40.0%
TGTTGGAAATTTAGGTGCAC+TGG - chr4.3:9949019-9949038 MS.gene57427:CDS 40.0%
TGTTGTCTCCTTCAAATGTC+TGG + chr4.3:9950013-9950032 None:intergenic 40.0%
TTCATAAGCACCTATGCTGT+AGG - chr4.3:9948581-9948600 MS.gene57427:CDS 40.0%
TTGGAGATGTTTCTCGTGAT+GGG - chr4.3:9949523-9949542 MS.gene57427:intron 40.0%
TTTGGAGATGTTTCTCGTGA+TGG - chr4.3:9949522-9949541 MS.gene57427:intron 40.0%
! AGTTTGCCACAGTTTTTGCT+AGG - chr4.3:9949292-9949311 MS.gene57427:intron 40.0%
! ATCAAGAGCATAAAGATCGC+AGG + chr4.3:9951206-9951225 None:intergenic 40.0%
! CTCTCTGAGCTTGTTTGAAT+TGG - chr4.3:9948371-9948390 MS.gene57427:intron 40.0%
! GAAATTTAGGATCCCGTAGA+TGG + chr4.3:9950782-9950801 None:intergenic 40.0%
! GACAACCTTCTAAACCGTTT+TGG - chr4.3:9949504-9949523 MS.gene57427:intron 40.0%
! GGGTGGTTCTGTAATCAATT+TGG - chr4.3:9948253-9948272 MS.gene57427:intron 40.0%
! GTCGGTTTAGCAACTTCTAT+AGG - chr4.3:9948672-9948691 MS.gene57427:intron 40.0%
! GTGTTTTCCTCTCATGTAAC+CGG + chr4.3:9947893-9947912 None:intergenic 40.0%
!! ATGATGGTGCTATCAAATGG+TGG - chr4.3:9949244-9949263 MS.gene57427:intron 40.0%
!! CAATTCCAGGAAGTGTTTGA+TGG + chr4.3:9949401-9949420 None:intergenic 40.0%
!! CTTCTGGCGTTGTTTTCAAA+AGG + chr4.3:9951719-9951738 None:intergenic 40.0%
!! TAAATCGGTTTGGTTCCTTG+AGG - chr4.3:9949970-9949989 MS.gene57427:CDS 40.0%
AAGACCCATCAAACACTTCC+TGG - chr4.3:9949393-9949412 MS.gene57427:intron 45.0%
ACAGATGCTGAGTGACTTTG+CGG + chr4.3:9949916-9949935 None:intergenic 45.0%
ACCAGAGAAAGTTCCAAGGA+GGG - chr4.3:9950664-9950683 MS.gene57427:intron 45.0%
AGAGTAAGCTCCTGATTGCT+TGG + chr4.3:9951944-9951963 None:intergenic 45.0%
AGCCAAATCCAGTTACTGCT+AGG - chr4.3:9950742-9950761 MS.gene57427:intron 45.0%
AGGTGCCCTTGTTACATGAT+CGG + chr4.3:9951917-9951936 None:intergenic 45.0%
CAAAGTCACTCAGCATCTGT+AGG - chr4.3:9949916-9949935 MS.gene57427:CDS 45.0%
CAAATCCAGTTACTGCTAGG+TGG - chr4.3:9950745-9950764 MS.gene57427:intron 45.0%
CACCTAGCAGTAACTGGATT+TGG + chr4.3:9950747-9950766 None:intergenic 45.0%
CCTTCGGTTAATAAGCGGTT+CGG - chr4.3:9949564-9949583 MS.gene57427:intron 45.0%
CGCTTCCTTCGGTTAATAAG+CGG - chr4.3:9949559-9949578 MS.gene57427:intron 45.0%
CGGTCATAGCAAAACAACCT+GGG + chr4.3:9948331-9948350 None:intergenic 45.0%
CTACACCTTAGTGTAGACTG+TGG - chr4.3:9950227-9950246 MS.gene57427:CDS 45.0%
GCTCAGAGAGGAAATTACCA+TGG + chr4.3:9948361-9948380 None:intergenic 45.0%
GTAAAAACCAGGGTAGGTAG+TGG - chr4.3:9951457-9951476 MS.gene57427:intron 45.0%
GTACACAAGTACGCTTCCTT+CGG - chr4.3:9949548-9949567 MS.gene57427:intron 45.0%
TACCAGAGAAAGTTCCAAGG+AGG - chr4.3:9950663-9950682 MS.gene57427:intron 45.0%
TCGCGGGAAGAAATTAATCG+TGG - chr4.3:9947852-9947871 MS.gene57427:CDS 45.0%
TCGGTCATAGCAAAACAACC+TGG + chr4.3:9948332-9948351 None:intergenic 45.0%
TGTAAGCGTCCTCAAGGTTT+CGG - chr4.3:9949638-9949657 MS.gene57427:intron 45.0%
TTCATCGGTGATCGGATCAA+AGG + chr4.3:9949205-9949224 None:intergenic 45.0%
TTCTTCTGTAAGCGTCCTCA+AGG - chr4.3:9949632-9949651 MS.gene57427:intron 45.0%
TTTCCAACAGAGACACTAGG+AGG + chr4.3:9949008-9949027 None:intergenic 45.0%
! AAAGCACTCAAAACCACTCG+GGG - chr4.3:9950956-9950975 MS.gene57427:intron 45.0%
! ATTCTATGCAGTCTTTGGGG+TGG - chr4.3:9948236-9948255 MS.gene57427:intron 45.0%
! GCATAAGTTGAAGCCAGCAT+GGG + chr4.3:9949768-9949787 None:intergenic 45.0%
! GGTCATAAAGTTGGCCTCAA+TGG - chr4.3:9949435-9949454 MS.gene57427:intron 45.0%
! TGCATAAGTTGAAGCCAGCA+TGG + chr4.3:9949769-9949788 None:intergenic 45.0%
! TTGGCTCTTGTTAGAGAAGC+TGG - chr4.3:9948021-9948040 MS.gene57427:intron 45.0%
!! CGAAAGCACTCAAAACCACT+CGG - chr4.3:9950954-9950973 MS.gene57427:intron 45.0%
!! GAAAGCACTCAAAACCACTC+GGG - chr4.3:9950955-9950974 MS.gene57427:intron 45.0%
!! GGCCTCAATGGTGTTGATAA+TGG - chr4.3:9949447-9949466 MS.gene57427:intron 45.0%
!! GGTAGTGTTGATATGTCGCT+TGG - chr4.3:9948108-9948127 MS.gene57427:intron 45.0%
!! GGTGCTATCAAATGGTGGAT+TGG - chr4.3:9949249-9949268 MS.gene57427:intron 45.0%
!! TAAAGCGGTGTCGCATAGTA+TGG - chr4.3:9948932-9948951 MS.gene57427:intron 45.0%
!!! TAAAATTATTATAATCTTTT+CGG - chr4.3:9951312-9951331 MS.gene57427:intron 5.0%
!!! TTTTTTTTTTTTTTTCATTT+GGG - chr4.3:9948160-9948179 MS.gene57427:intron 5.0%
AACAGAGACACTAGGAGGCT+AGG + chr4.3:9949003-9949022 None:intergenic 50.0%
AGGACAGCTGGTGCAGAAAT+AGG + chr4.3:9951152-9951171 None:intergenic 50.0%
ATCGGTGATCGGATCAAAGG+TGG + chr4.3:9949202-9949221 None:intergenic 50.0%
CAAAGGTGGCGAGAGTTTGA+AGG + chr4.3:9949188-9949207 None:intergenic 50.0%
CAATAGTGGCCGAAACCTTG+AGG + chr4.3:9949650-9949669 None:intergenic 50.0%
CCGAACCGCTTATTAACCGA+AGG + chr4.3:9949567-9949586 None:intergenic 50.0%
CGAGAATCGTTACTTCGGGT+TGG + chr4.3:9949716-9949735 None:intergenic 50.0%
CGGTTTAGAAGGTTGTCTCG+AGG + chr4.3:9949501-9949520 None:intergenic 50.0%
GAGGGACTTTAGCAGTGACA+TGG - chr4.3:9950682-9950701 MS.gene57427:intron 50.0%
GCACCTATTGCCAAGCAATC+AGG - chr4.3:9951931-9951950 MS.gene57427:CDS 50.0%
GCATAAGCTTATGCCCATGC+TGG - chr4.3:9949752-9949771 MS.gene57427:intron 50.0%
GCTACTGCATAGCACTTACC+CGG - chr4.3:9949098-9949117 MS.gene57427:CDS 50.0%
GCTCCTGATTGCTTGGCAAT+AGG + chr4.3:9951937-9951956 None:intergenic 50.0%
GGAAGGTGAAGACCATCTAC+GGG - chr4.3:9950767-9950786 MS.gene57427:intron 50.0%
GGGAAGGTGAAGACCATCTA+CGG - chr4.3:9950766-9950785 MS.gene57427:intron 50.0%
GGGTGTGCGGTGTGTTTATT+TGG - chr4.3:9950551-9950570 MS.gene57427:CDS 50.0%
GGTGCCCTTGTTACATGATC+GGG + chr4.3:9951916-9951935 None:intergenic 50.0%
GTGGACACAAATTCCCTCTC+CGG - chr4.3:9947871-9947890 MS.gene57427:CDS 50.0%
TAGCCTCCTAGTGTCTCTGT+TGG - chr4.3:9949002-9949021 MS.gene57427:intron 50.0%
TCAAAACCACTCGGGGACTT+TGG - chr4.3:9950963-9950982 MS.gene57427:intron 50.0%
TCACTGCTAAAGTCCCTCCT+TGG + chr4.3:9950680-9950699 None:intergenic 50.0%
TCCCTCCTTGGAACTTTCTC+TGG + chr4.3:9950668-9950687 None:intergenic 50.0%
TCCTCTCATGTAACCGGAGA+GGG + chr4.3:9947887-9947906 None:intergenic 50.0%
TGCAGATGTCCATGCTCTCT+CGG - chr4.3:9949860-9949879 MS.gene57427:CDS 50.0%
TGGAGCTCTTAGATTCCGCT+CGG - chr4.3:9949467-9949486 MS.gene57427:intron 50.0%
TGTGGCAAACTTGCCATGCA+TGG + chr4.3:9949283-9949302 None:intergenic 50.0%
TTCCTCTCATGTAACCGGAG+AGG + chr4.3:9947888-9947907 None:intergenic 50.0%
! GAGGGACCACTCTAAAAAGC+AGG - chr4.3:9951426-9951445 MS.gene57427:intron 50.0%
!! GAACTTGTTGGTGGTAGGGT+AGG - chr4.3:9949600-9949619 MS.gene57427:intron 50.0%
!! GGTAGGTAGTGGGTATGTGA+GGG - chr4.3:9951468-9951487 MS.gene57427:intron 50.0%
AGCATAACCATGGCCTCCAC+AGG + chr4.3:9949946-9949965 None:intergenic 55.0%
AGCATCTGTAGGGAAGCCTG+TGG - chr4.3:9949927-9949946 MS.gene57427:CDS 55.0%
ATCTGTAGGGAAGCCTGTGG+AGG - chr4.3:9949930-9949949 MS.gene57427:CDS 55.0%
ATTGGCAATGCCGCCATGCA+TGG - chr4.3:9949267-9949286 MS.gene57427:intron 55.0%
CACATACCCACTACCTACCC+TGG + chr4.3:9951467-9951486 None:intergenic 55.0%
CCAGTTACTGCTAGGTGGGA+AGG - chr4.3:9950750-9950769 MS.gene57427:intron 55.0%
CCTTCCCACCTAGCAGTAAC+TGG + chr4.3:9950753-9950772 None:intergenic 55.0%
CTCGAGGAATTCTCACCGAG+CGG + chr4.3:9949485-9949504 None:intergenic 55.0%
GCAACTCTCGGGGAACTTGT+TGG - chr4.3:9949588-9949607 MS.gene57427:intron 55.0%
GCTATGACCGAGCTTCACCA+TGG - chr4.3:9948341-9948360 MS.gene57427:intron 55.0%
GGCAAACTTGCCATGCATGG+CGG + chr4.3:9949280-9949299 None:intergenic 55.0%
TCCCTCTCCGGTTACATGAG+AGG - chr4.3:9947883-9947902 MS.gene57427:CDS 55.0%
TGTGGCTCCCAACAAAGCCA+AGG - chr4.3:9951267-9951286 MS.gene57427:intron 55.0%
TTCAGAGCAGCTTGAGCGCT+TGG + chr4.3:9951178-9951197 None:intergenic 55.0%
!! AAGCGGTTCGGTGCAACTCT+CGG - chr4.3:9949576-9949595 MS.gene57427:intron 55.0%
!! ACTCTCGGGGAACTTGTTGG+TGG - chr4.3:9949591-9949610 MS.gene57427:intron 55.0%
!! CGGGGAACTTGTTGGTGGTA+GGG - chr4.3:9949596-9949615 MS.gene57427:intron 55.0%
!! GGGTAGGTAGTGGGTATGTG+AGG - chr4.3:9951467-9951486 MS.gene57427:intron 55.0%
!! GTTACTTCGGGTTGGTCTCG+AGG + chr4.3:9949708-9949727 None:intergenic 55.0%
!! TCGGGGAACTTGTTGGTGGT+AGG - chr4.3:9949595-9949614 MS.gene57427:intron 55.0%
AGCGCTTGGATCAGGACAGC+TGG + chr4.3:9951164-9951183 None:intergenic 60.0%
AGGCATGTGGGGGTAACGTG+TGG - chr4.3:9948858-9948877 MS.gene57427:CDS 60.0%
CATGCACCAAAGTCCCCGAG+TGG + chr4.3:9950972-9950991 None:intergenic 60.0%
GATGTCCATGCTCTCTCGGC+AGG - chr4.3:9949864-9949883 MS.gene57427:CDS 60.0%
GCAGCTTGAGCGCTTGGATC+AGG + chr4.3:9951172-9951191 None:intergenic 60.0%
GGCATGTGGGGGTAACGTGT+GGG - chr4.3:9948859-9948878 MS.gene57427:CDS 60.0%
TCAGACCTGCCGAGAGAGCA+TGG + chr4.3:9949872-9949891 None:intergenic 60.0%
TGCTCTCTCGGCAGGTCTGA+AGG - chr4.3:9949872-9949891 MS.gene57427:CDS 60.0%
! CACTCGGGGACTTTGGTGCA+TGG - chr4.3:9950970-9950989 MS.gene57427:intron 60.0%
!! AGCGGTTCGGTGCAACTCTC+GGG - chr4.3:9949577-9949596 MS.gene57427:intron 60.0%
AGGGAAGCCTGTGGAGGCCA+TGG - chr4.3:9949936-9949955 MS.gene57427:CDS 65.0%
!! GCGGTTCGGTGCAACTCTCG+GGG - chr4.3:9949578-9949597 MS.gene57427:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 9947838 9951993 9947838 ID=MS.gene57427
chr4.3 mRNA 9947838 9951993 9947838 ID=MS.gene57427.t1;Parent=MS.gene57427
chr4.3 exon 9951677 9951993 9951677 ID=MS.gene57427.t1.exon1;Parent=MS.gene57427.t1
chr4.3 CDS 9951677 9951993 9951677 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9951469 9951584 9951469 ID=MS.gene57427.t1.exon2;Parent=MS.gene57427.t1
chr4.3 CDS 9951469 9951584 9951469 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9949782 9950662 9949782 ID=MS.gene57427.t1.exon3;Parent=MS.gene57427.t1
chr4.3 CDS 9949782 9950662 9949782 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9949013 9949192 9949013 ID=MS.gene57427.t1.exon4;Parent=MS.gene57427.t1
chr4.3 CDS 9949013 9949192 9949013 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9948753 9948919 9948753 ID=MS.gene57427.t1.exon5;Parent=MS.gene57427.t1
chr4.3 CDS 9948753 9948919 9948753 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9948543 9948666 9948543 ID=MS.gene57427.t1.exon6;Parent=MS.gene57427.t1
chr4.3 CDS 9948543 9948666 9948543 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
chr4.3 exon 9947838 9947996 9947838 ID=MS.gene57427.t1.exon7;Parent=MS.gene57427.t1
chr4.3 CDS 9947838 9947996 9947838 ID=cds.MS.gene57427.t1;Parent=MS.gene57427.t1
Gene Sequence

>MS.gene57427

ATGGAAAATTGCAGTCGCGGGAAGAAATTAATCGTGGACACAAATTCCCTCTCCGGTTACATGAGAGGAAAACACAGAGAGATACAAGAGAAAATTTTCGATTACTTCAACGCTAATCCACATCTTCTAACCCCTATTGAAATTTCCAAAGATAATCACCGAGAATTGTGTATGAATCAGCTTTTGGCTCTTGTTAGAGAAGCTGGAGTTAAACCTCTTCATTATGTTGTTAATGATCCTGCTAAGTATTTTGCTATTTTGGAAGCTGTTGGTAGTGTTGATATGTCGCTTGGAATCAAAATGGGTGTTCAATATAGGTATGTTTTTTTTTTTTTTTCATTTGGGTCATGTCAAAATTGTTTCTTTTTGTTTTTTTGTTTTGTTTTGATGAATGGTTTATTCTATGCAGTCTTTGGGGTGGTTCTGTAATCAATTTGGGAACACAGAAACATAAGGACAAGTACTATGATGGTATTGATAACTTGGATTACCCAGGTTGTTTTGCTATGACCGAGCTTCACCATGGTAATTTCCTCTCTGAGCTTGTTTGAATTGGTTTATTTGAGCTTATCTGCTAGCGTACAGACTTGTGAAACTATTTGGGAGAACTTACATGTTTTTAGCTTATTTCAATAAACTTTCTATGACAGCTTACAAAAATATCTTATAGCTTACAAAAACATCTTATAGTTTATATGAAAACAATTTGAATTTCTTTTATCTTTTGTTGTATCAATAGTCTATTCATAAGCACCTATGCTGTAGGCACTTAATAAACTGTTTATCTAAATAGAGTCAAAGTTATATTAACTGATGTGAGCTTTGTCTTATTCTGTCGGTTTAGCAACTTCTATAGGGTTGGGTTCTTAAAGTGTTGTCATTAGGTTCATGGTTTGAGTTTTCCAATTGATGTTAAGAGTGTAGAATGGGTTCTTATAGGAGCAATACATTCTTGGCAATTCTAAGGATTGAAAAACAATTTTGTGAAGTGAAAAGTGGGTCGTGTTCATAAAAATATAAAGGCATGTGGGGGTAACGTGTGGGATCCATTTTGAGTTAGTTGCAACATCATTGTCGAATTTGGTAGAGTAATTTAAAGCGGTGTCGCATAGTATGGTCCATCTGATTGTGAGATAAAATTCAAAATGGGTTCTGAGATGCTCCTAGCCTCCTAGTGTCTCTGTTGGAAATTTAGGTGCACTGGGATTGAGTAATTTTTTACTATTTGTTTTTATCTTAATTGGGTTTCTATTGGTACACGCTACTGCATAGCACTTACCCGGTACACATTTCTAAATCACTGCTCACTTTTCTTTTTTGTGCATAAACAGGTTCAAATGTGCAGGGCCTTCAAACTCTCGCCACCTTTGATCCGATCACCGATGAATTTATTATTGATACTCCAAATGATGGTGCTATCAAATGGTGGATTGGCAATGCCGCCATGCATGGCAAGTTTGCCACAGTTTTTGCTAGGTTGAAGTTACCTAATTATGATGCAAAAGGAGTTTCTGATATGGGTGTTCATGCTTTCATTGTTCCAATAAGGGATATGAAGACCCATCAAACACTTCCTGGAATTGAGATACATGATTGTGGTCATAAAGTTGGCCTCAATGGTGTTGATAATGGAGCTCTTAGATTCCGCTCGGTGAGAATTCCTCGAGACAACCTTCTAAACCGTTTTGGAGATGTTTCTCGTGATGGGAAGTACACAAGTACGCTTCCTTCGGTTAATAAGCGGTTCGGTGCAACTCTCGGGGAACTTGTTGGTGGTAGGGTAGGCCTTGCATATTCTTCTGTAAGCGTCCTCAAGGTTTCGGCCACTATTGCCATCAGATATTCTCTACTTCGTCAGCAATTTGGACCTCGAGACCAACCCGAAGTAACGATTCTCGACTACCAGTCTCATCAGCATAAGCTTATGCCCATGCTGGCTTCAACTTATGCATTTCATTTTGCCACAACAAACTTAGTGGAGAAATATGCTCAAATGAAGAAGTCTCATGATGAAGAATTAGTTGCAGATGTCCATGCTCTCTCGGCAGGTCTGAAGGCTTATGTAACATCATACACCGCAAAGTCACTCAGCATCTGTAGGGAAGCCTGTGGAGGCCATGGTTATGCTGCTGTAAATCGGTTTGGTTCCTTGAGGAATGATCATGACATTTTCCAGACATTTGAAGGAGACAACACAGTTCTTCTTCAACAGGTTATTAGCGCTAAGTCTAAATTATATCAATTCTCAAAGAGACTTTTATAACCAGACTGTAGTTATCTATGATCTGATGGTGATTATAATATAATCAACTATTAATTTATGACTGTGGTCGCTGCTGCTGCTTTCCTTGCTAAACAAAAAAATTATATATTTGCCTTGTTCTATAATCTACACCTTAGTGTAGACTGTGGAGAATAGTGAACAAATCATCAGGGAAACTTGAGTAAATAATAGATAAATAAAGGATAGCTGCAATTGTTTGCCCCTTTGATTCTAAATACCATTCTAACCTTGATATATTCCAAGATTAACTATTACTAAAGCTTCTTTGGATCTTGCCTTTGCTACTCTCCAAATGAAATCCAAAATTTTCAAAAGATTTCATGAAACGATTTAATTGCTGATGCACAGACTCATTTGCATTTAACCATGTAGGATCATAGGAAAGTGTACCTTTCCTTTGTTTATGGCAGCTGCAATTTTACAACTTTTGGGTGTGCGGTGTGTTTATTTGGTTCTTGTATTCTTGTTATTTCGAGCACGTAAGTAATAGGTTTGAATTTTTCCTTTACAAATGAAGGTTGCAGCCGATCTTTTGAAACAATACCAGAGAAAGTTCCAAGGAGGGACTTTAGCAGTGACATGGAACTACTTGAGAGATTCCATGAGTACTTATCTGTCACAGCCAAATCCAGTTACTGCTAGGTGGGAAGGTGAAGACCATCTACGGGATCCTAAATTTCAATTGGATGCTTTCAGAGTGAGTTTTATCTTGATTCTTTGACTTAAGATTAAACATAATATGTGCTGAAACTAATAAATCAACAACTTATTTTGATTTTAAATTTTGCAGTACCGAACGTCTAGATTACTTCATAGTGTTGCTGTACGACTTCGAAAGCACTCAAAACCACTCGGGGACTTTGGTGCATGGAATAGATGCTTAAATCATCTATTGACACTTGCAGAATCACATATCGAGTCAGTCATTCTTGCTAAATTCATTGAAGCTGTGCAGAGGTGCTTCCTAGTTCCTTTCTCTAACATATAATTGATTTTTATTTACACAATTTTCCCAATTTTAACACGGCCTATTTCTGCACCAGCTGTCCTGATCCAAGCGCTCAAGCTGCTCTGAAGCTTGCCTGCGATCTTTATGCTCTTGATCGAATATGGAATGACATTGGAACCTACCGTAATGTTGATTATGTGGCTCCCAACAAAGCCAAGGTACATAAAAAATTTCTTTGAAATAAAATTATTATAATCTTTTCGGAAAAGAAAATCAGTACACCAATGAATACATAAATCAATGAACAGTTTCTTAGTTTTCCTGATAGCTCATAATGAAAGCTAATAACTTCTATGAGGGACCACTCTAAAAAGCAGGAATAACTAGTAAAAACCAGGGTAGGTAGTGGGTATGTGAGGGACAACTATAATGGTTTTCATAAAGAGATAGATATGAAGAAGAAAAAAATAAAGAATACACTTTTTTCAAACTTGCTTTCTTACCCAAAAAGAAGGAAAACATAGGTTAAGATTTATAAAAATTTCACATTCATAAGCTGTTTTTTTTTCTCTCTGAACTAAACATTTATTGATTATGAGTGCCATTTGGCTAGTGAAAATCTTTGTTTTGGAAATCACTTTTTAACCTTTTGAAAACAACGCCAGAAGCACTGAGTTGAATTTGAGATTTAGGATGTAGACCTTGCTCTCTTTAACACTATAATCTAAATTACTGTTGAATAATGATGTTTCTCCATTTCACAGGCAATCCACAAACTGTCAGAATATCTAAGTTTCCAAGTGAGGAATATTGCAAAGGAACTTGTTGATGCATTTGATCTTCCCGATCATGTAACAAGGGCACCTATTGCCAAGCAATCAGGAGCTTACTCTCAGTACACACAATTTGTGGGATTCCAATAA
Protein sequence

>MS.gene57427.t1

MENCSRGKKLIVDTNSLSGYMRGKHREIQEKIFDYFNANPHLLTPIEISKDNHRELCMNQLLALVREAGVKPLHYVVNDPAKYFAILEAVGSVDMSLGIKMGVQYSLWGGSVINLGTQKHKDKYYDGIDNLDYPGCFAMTELHHGSNVQGLQTLATFDPITDEFIIDTPNDGAIKWWIGNAAMHGKFATVFARLKLPNYDAKGVSDMGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSTLPSVNKRFGATLGELVGGRVGLAYSSVSVLKVSATIAIRYSLLRQQFGPRDQPEVTILDYQSHQHKLMPMLASTYAFHFATTNLVEKYAQMKKSHDEELVADVHALSAGLKAYVTSYTAKSLSICREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYQRKFQGGTLAVTWNYLRDSMSTYLSQPNPVTARWEGEDHLRDPKFQLDAFRYRTSRLLHSVAVRLRKHSKPLGDFGAWNRCLNHLLTLAESHIESVILAKFIEAVQSCPDPSAQAALKLACDLYALDRIWNDIGTYRNVDYVAPNKAKAIHKLSEYLSFQVRNIAKELVDAFDLPDHVTRAPIAKQSGAYSQYTQFVGFQ