Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52445.t1 | XP_003588929.2 | 94.2 | 361 | 12 | 1 | 1 | 352 | 26 | 386 | 1.00E-184 | 656 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52445.t1 | Q9SYU4 | 65.7 | 332 | 97 | 4 | 30 | 352 | 24 | 347 | 1.2e-114 | 414.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52445.t1 | G7I910 | 94.2 | 361 | 12 | 1 | 1 | 352 | 26 | 386 | 7.2e-185 | 656.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene75306 | MS.gene52445 | PPI |
MS.gene56255 | MS.gene52445 | PPI |
MS.gene63513 | MS.gene52445 | PPI |
MS.gene009457 | MS.gene52445 | PPI |
MS.gene40316 | MS.gene52445 | PPI |
MS.gene52445 | MS.gene014659 | PPI |
MS.gene51626 | MS.gene52445 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52445.t1 | MTR_1g015390 | 94.183 | 361 | 12 | 1 | 1 | 352 | 26 | 386 | 0.0 | 694 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52445.t1 | AT2G26350 | 65.663 | 332 | 97 | 4 | 30 | 352 | 24 | 347 | 1.37e-156 | 444 |
MS.gene52445.t1 | AT2G26350 | 65.116 | 301 | 92 | 3 | 30 | 321 | 24 | 320 | 9.29e-141 | 402 |
MS.gene52445.t1 | AT2G26350 | 65.116 | 301 | 92 | 3 | 30 | 321 | 24 | 320 | 9.29e-141 | 402 |
MS.gene52445.t1 | AT2G26350 | 65.116 | 301 | 92 | 3 | 30 | 321 | 24 | 320 | 9.69e-141 | 402 |
MS.gene52445.t1 | AT2G26350 | 66.078 | 283 | 88 | 3 | 70 | 352 | 2 | 276 | 6.61e-134 | 384 |
Find 90 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACTTCCTTTGTCAGCTTC+TGG | 0.184069 | 1.4:-6744460 | None:intergenic |
TCAGCTGCTCGCATCATTTC+CGG | 0.232092 | 1.4:-6739381 | None:intergenic |
TCTAAATGAAGAAGGTAATT+TGG | 0.233910 | 1.4:+6744432 | MS.gene52445:CDS |
TTGCAGCATCATGCAACTAA+TGG | 0.269595 | 1.4:+6745347 | MS.gene52445:intron |
AGCATAAACTCGGAGGATTT+TGG | 0.272554 | 1.4:+6741029 | MS.gene52445:CDS |
CTGATTCGTTCTGCAATATA+TGG | 0.283807 | 1.4:-6740747 | None:intergenic |
TATTAGGTTGCAGGACCTTA+TGG | 0.304425 | 1.4:+6740669 | MS.gene52445:intron |
TGCAGCATCATGCAACTAAT+GGG | 0.331130 | 1.4:+6745348 | MS.gene52445:intron |
TGCAATAACTCGCGAACAAA+AGG | 0.335279 | 1.4:-6741384 | None:intergenic |
CATATATTGCAGAACGAATC+AGG | 0.335799 | 1.4:+6740748 | MS.gene52445:CDS |
TGACTGGTTTATTAGGTTGC+AGG | 0.340656 | 1.4:+6740660 | MS.gene52445:intron |
GTTTCCTCCGGCTGCTCAAC+CGG | 0.356902 | 1.4:+6739362 | MS.gene52445:CDS |
TATGAGTCTGCTGAGATTTA+CGG | 0.359212 | 1.4:+6740914 | MS.gene52445:CDS |
GGCATTCGTTATGTGTTCAT+TGG | 0.367428 | 1.4:+6741562 | MS.gene52445:CDS |
ACGAATGCCTGCAGCACGTT+TGG | 0.370694 | 1.4:-6741548 | None:intergenic |
GACAAAGGAAGTTGGGTCTC+TGG | 0.380016 | 1.4:+6744469 | MS.gene52445:CDS |
TGGGGTCACCTTGGAAGAAA+TGG | 0.413005 | 1.4:+6739276 | MS.gene52445:CDS |
TTACCTTCTTCATTTAGAAC+AGG | 0.417974 | 1.4:-6744427 | None:intergenic |
GGAGTCACGGCGGTTTCCTC+CGG | 0.418733 | 1.4:+6739350 | MS.gene52445:CDS |
CTTTACTACGTTCTCACAAC+AGG | 0.422680 | 1.4:+6739973 | MS.gene52445:CDS |
GTTTGGATATATGATAATAT+AGG | 0.425104 | 1.4:-6741531 | None:intergenic |
ATTTCTTCTGCATCTGCCTC+AGG | 0.427038 | 1.4:+6740977 | MS.gene52445:CDS |
TCTGTGCAGATATCAAATAC+TGG | 0.437156 | 1.4:+6743785 | MS.gene52445:intron |
ATCATTTCCGGTTGAGCAGC+CGG | 0.437774 | 1.4:-6739369 | None:intergenic |
GATCGCTGCTTCAGTTCATC+AGG | 0.444011 | 1.4:+6743875 | MS.gene52445:CDS |
CCCATGGGAGTAGTAGTTCT+CGG | 0.450693 | 1.4:+6740945 | MS.gene52445:CDS |
AGAAGCTGACAAAGGAAGTT+GGG | 0.461591 | 1.4:+6744462 | MS.gene52445:CDS |
CAGAAGCTGACAAAGGAAGT+TGG | 0.468737 | 1.4:+6744461 | MS.gene52445:CDS |
TACAATGAACAAAGCACGCC+TGG | 0.482560 | 1.4:-6740709 | None:intergenic |
GGTTGCATTTGGTTCAGAGA+TGG | 0.485195 | 1.4:+6741050 | MS.gene52445:CDS |
CATATATCCAAACGTGCTGC+AGG | 0.487117 | 1.4:+6741541 | MS.gene52445:CDS |
ATCGACGTCTGTAACGGATT+CGG | 0.495092 | 1.4:-6739301 | None:intergenic |
TACGTTCTCACAACAGGCTC+AGG | 0.499099 | 1.4:+6739979 | MS.gene52445:CDS |
CCATGGGAGTAGTAGTTCTC+GGG | 0.500116 | 1.4:+6740946 | MS.gene52445:CDS |
TATAACCTGCTGATGTATGG+TGG | 0.501231 | 1.4:-6743911 | None:intergenic |
GCACGCCTGGCTGGTGTAGG+AGG | 0.506200 | 1.4:-6740696 | None:intergenic |
TTGCCTGTTCTAAATGAAGA+AGG | 0.507663 | 1.4:+6744424 | MS.gene52445:CDS |
GTCAGAAAGGATAATGCCTC+GGG | 0.523818 | 1.4:-6740891 | None:intergenic |
TCCGCCGCCGTGCTAGTACT+CGG | 0.524479 | 1.4:-6739330 | None:intergenic |
CAGCAGACTCATAGTCAGAA+AGG | 0.526542 | 1.4:-6740904 | None:intergenic |
ATGAACAAAGCACGCCTGGC+TGG | 0.528351 | 1.4:-6740705 | None:intergenic |
ATTCGGAGCCATTTCTTCCA+AGG | 0.531867 | 1.4:-6739284 | None:intergenic |
CGGTGTAGGTACTAGAGTTG+CGG | 0.532284 | 1.4:+6739552 | MS.gene52445:intron |
GCAACCCACCATACATCAGC+AGG | 0.534137 | 1.4:+6743906 | MS.gene52445:CDS |
CTGTGCAGATATCAAATACT+GGG | 0.539646 | 1.4:+6743786 | MS.gene52445:intron |
ATAACCTGCTGATGTATGGT+GGG | 0.540377 | 1.4:-6743910 | None:intergenic |
GGTGTAGGAGGAAGTCCATA+AGG | 0.541970 | 1.4:-6740684 | None:intergenic |
CTCTGGATCCTCATCTTCTG+AGG | 0.543345 | 1.4:+6744486 | MS.gene52445:CDS |
TCCGAGTACTAGCACGGCGG+CGG | 0.544042 | 1.4:+6739329 | MS.gene52445:CDS |
GACTTCCTCCTACACCAGCC+AGG | 0.546777 | 1.4:+6740691 | MS.gene52445:CDS |
CTTTGTGTAATAGCTGCTGA+AGG | 0.552377 | 1.4:+6743828 | MS.gene52445:CDS |
CCCGAGAACTACTACTCCCA+TGG | 0.556299 | 1.4:-6740946 | None:intergenic |
GGCCACAGGAAGTAGCTGTT+GGG | 0.561730 | 1.4:-6745409 | None:intergenic |
TCCAAGGTGACCCCACCCCA+TGG | 0.561942 | 1.4:-6739268 | None:intergenic |
GCAATAACTCGCGAACAAAA+GGG | 0.562909 | 1.4:-6741383 | None:intergenic |
TGGCCACAGGAAGTAGCTGT+TGG | 0.563044 | 1.4:-6745410 | None:intergenic |
AAAGCACGCCTGGCTGGTGT+AGG | 0.564320 | 1.4:-6740699 | None:intergenic |
AGCTGCATCGACGTCTGTAA+CGG | 0.564736 | 1.4:-6739307 | None:intergenic |
AGTCAGAAAGGATAATGCCT+CGG | 0.572669 | 1.4:-6740892 | None:intergenic |
CTAGCACGGCGGCGGAGTCA+CGG | 0.578256 | 1.4:+6739337 | MS.gene52445:CDS |
TTGGGTGTTGACGATTACTC+AGG | 0.582995 | 1.4:-6745391 | None:intergenic |
ACAGGCATCGTAAACGAAAG+AGG | 0.583737 | 1.4:-6739421 | None:intergenic |
GACAATACCAGCAAAATACA+TGG | 0.598702 | 1.4:-6745430 | None:intergenic |
TGATGTATGGTGGGTTGCAA+AGG | 0.599675 | 1.4:-6743901 | None:intergenic |
TTTGGTTCAGAGATGGCCTA+CGG | 0.600488 | 1.4:+6741057 | MS.gene52445:CDS |
CCGAGAACTACTACTCCCAT+GGG | 0.600505 | 1.4:-6740945 | None:intergenic |
GGCTCAGGACAACAGACACT+TGG | 0.601616 | 1.4:+6739994 | MS.gene52445:CDS |
TAATTGAACCTCAGAAGATG+AGG | 0.609240 | 1.4:-6744494 | None:intergenic |
CCAGCAAAATACATGGCCAC+AGG | 0.617665 | 1.4:-6745423 | None:intergenic |
CTTCAAAATAAAACAACATG+AGG | 0.619531 | 1.4:-6741425 | None:intergenic |
ATTTACGGTGAAAATGCCCA+TGG | 0.620174 | 1.4:+6740929 | MS.gene52445:CDS |
CACCCAACAGCTACTTCCTG+TGG | 0.636061 | 1.4:+6745407 | MS.gene52445:CDS |
ACGAGGTTGAAGCATAAACT+CGG | 0.639081 | 1.4:+6741019 | MS.gene52445:CDS |
TGCAGCTCCGAGTACTAGCA+CGG | 0.642878 | 1.4:+6739323 | MS.gene52445:CDS |
GGAATACTGTGATATCACTC+AGG | 0.645012 | 1.4:+6740020 | MS.gene52445:CDS |
AGTTCTAGAATTGCTTCCCG+AGG | 0.650200 | 1.4:+6740875 | MS.gene52445:intron |
GCAGCATCATGCAACTAATG+GGG | 0.650993 | 1.4:+6745349 | MS.gene52445:intron |
AAGCATCAAATCAAAGACCC+AGG | 0.652810 | 1.4:+6741587 | MS.gene52445:CDS |
GCATCTCCAGAAGCTGACAA+AGG | 0.655470 | 1.4:+6744454 | MS.gene52445:CDS |
TGTAGGTACTAGAGTTGCGG+TGG | 0.658050 | 1.4:+6739555 | MS.gene52445:intron |
TTTGTGTAATAGCTGCTGAA+GGG | 0.673194 | 1.4:+6743829 | MS.gene52445:CDS |
ATTTCCGGTTGAGCAGCCGG+AGG | 0.675055 | 1.4:-6739366 | None:intergenic |
TTTACGGTGAAAATGCCCAT+GGG | 0.696988 | 1.4:+6740930 | MS.gene52445:CDS |
AGTTGATGTAGACTGTCCTG+AGG | 0.710443 | 1.4:-6740993 | None:intergenic |
AGGACAACAGACACTTGGTG+AGG | 0.712504 | 1.4:+6739999 | MS.gene52445:CDS |
TGCGGTGGCTTATCAAAACG+AGG | 0.712918 | 1.4:+6739570 | MS.gene52445:CDS |
AGTCTACATCAACTTTGACG+AGG | 0.726670 | 1.4:+6741002 | MS.gene52445:CDS |
AGCTCCGAGTACTAGCACGG+CGG | 0.745017 | 1.4:+6739326 | MS.gene52445:CDS |
AGGTTGAAGCATAAACTCGG+AGG | 0.746923 | 1.4:+6741022 | MS.gene52445:CDS |
GCACGGCGGCGGAGTCACGG+CGG | 0.756041 | 1.4:+6739340 | MS.gene52445:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAAAATAACAGTATA+TGG | - | chr1.4:6741181-6741200 | None:intergenic | 10.0% |
!! | TTAAAGTTTAACTATTAAAA+AGG | + | chr1.4:6743446-6743465 | MS.gene52445:intron | 10.0% |
!!! | AATATTTTTAAAAAGTATGA+TGG | + | chr1.4:6741633-6741652 | MS.gene52445:intron | 10.0% |
!!! | ATATTTTTAAAAAGTATGAT+GGG | + | chr1.4:6741634-6741653 | MS.gene52445:intron | 10.0% |
!!! | TTTTATTTTTGTCAATTATA+TGG | + | chr1.4:6741191-6741210 | MS.gene52445:intron | 10.0% |
!! | AAGCAAAATTAATAAAATAG+AGG | + | chr1.4:6741879-6741898 | MS.gene52445:intron | 15.0% |
!! | AATGCAAAATTATTTAAGTA+TGG | + | chr1.4:6739740-6739759 | MS.gene52445:intron | 15.0% |
!! | ATAACATAATGATCATAATA+TGG | - | chr1.4:6743594-6743613 | None:intergenic | 15.0% |
!! | GGTTTATTATAAAAACTAAA+TGG | - | chr1.4:6744047-6744066 | None:intergenic | 15.0% |
!! | TTATTCATGATAGAATATAA+TGG | + | chr1.4:6743498-6743517 | MS.gene52445:intron | 15.0% |
!! | TTTAACTATTAAAAAGGATT+TGG | + | chr1.4:6743452-6743471 | MS.gene52445:intron | 15.0% |
!!! | AATTATAATTTGTATGTTTC+TGG | + | chr1.4:6745017-6745036 | MS.gene52445:intron | 15.0% |
!!! | ATTAAATGATGGAAAATAAT+GGG | + | chr1.4:6741836-6741855 | MS.gene52445:intron | 15.0% |
!!! | ATTTTGTGATATAAAATTAC+CGG | + | chr1.4:6741913-6741932 | MS.gene52445:intron | 15.0% |
!!! | CAAATTAGAATCAATTTTAA+AGG | + | chr1.4:6739846-6739865 | MS.gene52445:intron | 15.0% |
!!! | GTTGTAATTTTAAATGATAT+TGG | + | chr1.4:6740200-6740219 | MS.gene52445:intron | 15.0% |
!!! | TAATAAAATACAGCTTTAAA+GGG | - | chr1.4:6741275-6741294 | None:intergenic | 15.0% |
!!! | TATTAAATGATGGAAAATAA+TGG | + | chr1.4:6741835-6741854 | MS.gene52445:intron | 15.0% |
!!! | TCTTTTTGGATATAAAAATA+TGG | + | chr1.4:6744718-6744737 | MS.gene52445:intron | 15.0% |
!!! | TTTATTTTAGATATTGCTTT+TGG | - | chr1.4:6742273-6742292 | None:intergenic | 15.0% |
!!! | TTTTCCATCATTTAATATAA+AGG | - | chr1.4:6741832-6741851 | None:intergenic | 15.0% |
!! | AAATTACGAATTTCAATTTG+CGG | + | chr1.4:6739502-6739521 | MS.gene52445:intron | 20.0% |
!! | AATGATTAATTAAAAGAGAG+AGG | - | chr1.4:6740782-6740801 | None:intergenic | 20.0% |
!! | AATTGTTAAAAAACTCTGTA+GGG | + | chr1.4:6744243-6744262 | MS.gene52445:intron | 20.0% |
!! | AGGAATACAAAAATAATTCA+AGG | + | chr1.4:6744824-6744843 | MS.gene52445:intron | 20.0% |
!! | ATACCTAATAAAATGAATGT+TGG | - | chr1.4:6744856-6744875 | None:intergenic | 20.0% |
!! | ATTCCTAATAAAATGAATGT+TGG | - | chr1.4:6744810-6744829 | None:intergenic | 20.0% |
!! | CTATATTTAATCAGTTTAGT+TGG | + | chr1.4:6741305-6741324 | MS.gene52445:intron | 20.0% |
!! | GAATCAATTATTACTTAGAA+GGG | - | chr1.4:6742338-6742357 | None:intergenic | 20.0% |
!! | GTATGTATAGGAATTTAATT+AGG | - | chr1.4:6743245-6743264 | None:intergenic | 20.0% |
!! | GTTTGGATATATGATAATAT+AGG | - | chr1.4:6741534-6741553 | None:intergenic | 20.0% |
!! | TAAAAAGGATTTGGATTAAA+TGG | + | chr1.4:6743461-6743480 | MS.gene52445:intron | 20.0% |
!! | TAAGTTAAATGTTGTAAAGA+TGG | + | chr1.4:6742030-6742049 | MS.gene52445:intron | 20.0% |
!! | TAATTGTTAAAAAACTCTGT+AGG | + | chr1.4:6744242-6744261 | MS.gene52445:intron | 20.0% |
!! | TAGTTTATGATAGAACATTA+TGG | + | chr1.4:6740504-6740523 | MS.gene52445:intron | 20.0% |
!! | TGAATCAATTATTACTTAGA+AGG | - | chr1.4:6742339-6742358 | None:intergenic | 20.0% |
!!! | AAGTAGTTTTGTGAAATTTT+CGG | + | chr1.4:6739532-6739551 | MS.gene52445:intron | 20.0% |
!!! | AATAAAATACAGCTTTAAAG+GGG | - | chr1.4:6741274-6741293 | None:intergenic | 20.0% |
!!! | ATACCAAGTCTAATAATTTT+TGG | - | chr1.4:6742822-6742841 | None:intergenic | 20.0% |
!!! | ATCATTTAAAATTACAACAG+CGG | - | chr1.4:6740198-6740217 | None:intergenic | 20.0% |
!!! | GTAATAAAATACAGCTTTAA+AGG | - | chr1.4:6741276-6741295 | None:intergenic | 20.0% |
!!! | GTAATTTTAAATGATATTGG+AGG | + | chr1.4:6740203-6740222 | MS.gene52445:intron | 20.0% |
!!! | GTTCTAACATATTGTTTTAT+TGG | + | chr1.4:6740118-6740137 | MS.gene52445:intron | 20.0% |
!!! | TAAGTTGGTACAAAAAAAAA+TGG | + | chr1.4:6744298-6744317 | MS.gene52445:intron | 20.0% |
!!! | TCTTTCTTAATAGTTTTTCT+AGG | - | chr1.4:6740455-6740474 | None:intergenic | 20.0% |
!!! | TTTTTTTCTTTCTACTAAGT+GGG | - | chr1.4:6743548-6743567 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTTTCTACTAAG+TGG | - | chr1.4:6743549-6743568 | None:intergenic | 20.0% |
! | AAAAATTCCTTAAGTTTGAC+CGG | - | chr1.4:6741935-6741954 | None:intergenic | 25.0% |
! | AAAATCAAATTCACCAAATC+AGG | - | chr1.4:6740158-6740177 | None:intergenic | 25.0% |
! | AAACTAGATTTAGCAACAAA+CGG | - | chr1.4:6741342-6741361 | None:intergenic | 25.0% |
! | AAGTTATTATACTGATAGAG+TGG | - | chr1.4:6741242-6741261 | None:intergenic | 25.0% |
! | AATTACCATGATATTGATGA+TGG | - | chr1.4:6742544-6742563 | None:intergenic | 25.0% |
! | AATTGAATCCAATTCTCATA+GGG | - | chr1.4:6742154-6742173 | None:intergenic | 25.0% |
! | ACATGAACAATTAACAATGA+AGG | - | chr1.4:6740055-6740074 | None:intergenic | 25.0% |
! | AGACACATAAATTAAGAAAC+AGG | - | chr1.4:6743996-6744015 | None:intergenic | 25.0% |
! | AGTTGAATTTATTCTCCTTA+TGG | - | chr1.4:6743204-6743223 | None:intergenic | 25.0% |
! | ATAGCTAAACACTTTAGATT+AGG | - | chr1.4:6742749-6742768 | None:intergenic | 25.0% |
! | ATCATGAATGTAGACTAAAA+TGG | - | chr1.4:6743285-6743304 | None:intergenic | 25.0% |
! | ATTGAATGCTAGATAGAAAA+CGG | + | chr1.4:6741996-6742015 | MS.gene52445:intron | 25.0% |
! | CAACTAAAATTTGCAGTAAT+AGG | + | chr1.4:6742245-6742264 | MS.gene52445:intron | 25.0% |
! | CACTTAATCAACATTCAAAT+AGG | + | chr1.4:6742380-6742399 | MS.gene52445:intron | 25.0% |
! | CTCTTAAATACAAATCCATA+AGG | + | chr1.4:6743186-6743205 | MS.gene52445:intron | 25.0% |
! | CTTCAAAATAAAACAACATG+AGG | - | chr1.4:6741428-6741447 | None:intergenic | 25.0% |
! | GGATCCTTTATATTAAATGA+TGG | + | chr1.4:6741825-6741844 | MS.gene52445:intron | 25.0% |
! | GTCATTTAAGTAGAATTACA+TGG | + | chr1.4:6741680-6741699 | MS.gene52445:intron | 25.0% |
! | GTGTTTAATGTTTCCTTAAA+GGG | - | chr1.4:6742633-6742652 | None:intergenic | 25.0% |
! | TAAAAAGCCTTAAGAGAATT+AGG | + | chr1.4:6745261-6745280 | MS.gene52445:intron | 25.0% |
! | TAATTGAATCCAATTCTCAT+AGG | - | chr1.4:6742155-6742174 | None:intergenic | 25.0% |
! | TCTAAATGAAGAAGGTAATT+TGG | + | chr1.4:6744432-6744451 | MS.gene52445:CDS | 25.0% |
! | TGTGTTTAATGTTTCCTTAA+AGG | - | chr1.4:6742634-6742653 | None:intergenic | 25.0% |
! | TGTTTAATGTTTCCTTAAAG+GGG | - | chr1.4:6742632-6742651 | None:intergenic | 25.0% |
!! | AGATATGTTTCTTGCAATTT+TGG | + | chr1.4:6744985-6745004 | MS.gene52445:intron | 25.0% |
!! | AGTCCAACATTCATTTTATT+AGG | + | chr1.4:6744804-6744823 | MS.gene52445:intron | 25.0% |
!! | ATTACCATGATATTGATGAT+GGG | - | chr1.4:6742543-6742562 | None:intergenic | 25.0% |
!! | CTTTAAACTATAGTTTTCTG+TGG | - | chr1.4:6743432-6743451 | None:intergenic | 25.0% |
!!! | AACTTAAGGAATTTTTTTCC+TGG | + | chr1.4:6741939-6741958 | MS.gene52445:intron | 25.0% |
!!! | ATTACAATAGATTTTAGCCA+AGG | + | chr1.4:6742713-6742732 | MS.gene52445:intron | 25.0% |
!!! | CTCATGTTGTTTTATTTTGA+AGG | + | chr1.4:6741426-6741445 | MS.gene52445:CDS | 25.0% |
!!! | GCAAGTGATTTATTTTACAT+TGG | + | chr1.4:6740094-6740113 | MS.gene52445:intron | 25.0% |
!!! | TTACAATAGATTTTAGCCAA+GGG | + | chr1.4:6742714-6742733 | MS.gene52445:intron | 25.0% |
AAAAAAATGGACGACTAATG+TGG | + | chr1.4:6744311-6744330 | MS.gene52445:intron | 30.0% | |
AAAATTACCGGTCAAACTTA+AGG | + | chr1.4:6741925-6741944 | MS.gene52445:intron | 30.0% | |
AAAGTGATGACACAAAATGA+TGG | - | chr1.4:6744173-6744192 | None:intergenic | 30.0% | |
AAATAACCAAGTGATTACGA+AGG | - | chr1.4:6741140-6741159 | None:intergenic | 30.0% | |
AACACCTATAGTAGAAAAGA+TGG | + | chr1.4:6740319-6740338 | MS.gene52445:intron | 30.0% | |
AACATTCAAATAGGTGAAGT+TGG | + | chr1.4:6742389-6742408 | MS.gene52445:intron | 30.0% | |
AAGTTTCAAAACATGATACC+TGG | - | chr1.4:6741608-6741627 | None:intergenic | 30.0% | |
ACCAAGATTTAGTACATGAA+AGG | - | chr1.4:6743670-6743689 | None:intergenic | 30.0% | |
ACCTTTCATGTACTAAATCT+TGG | + | chr1.4:6743666-6743685 | MS.gene52445:intron | 30.0% | |
AGACATGATAGGATTAGAAA+CGG | + | chr1.4:6740281-6740300 | MS.gene52445:intron | 30.0% | |
AGTGAATTGAACTGGAATTA+AGG | - | chr1.4:6742364-6742383 | None:intergenic | 30.0% | |
AGTGCAATAAGATGATATGA+TGG | - | chr1.4:6745300-6745319 | None:intergenic | 30.0% | |
AGTTAACAATTGCCTTAACA+AGG | - | chr1.4:6742482-6742501 | None:intergenic | 30.0% | |
AGTTCTTAACCAGATTCAAA+GGG | - | chr1.4:6742442-6742461 | None:intergenic | 30.0% | |
AGTTTCAAAACATGATACCT+GGG | - | chr1.4:6741607-6741626 | None:intergenic | 30.0% | |
ATGATGACTGATGAATCATT+TGG | - | chr1.4:6744115-6744134 | None:intergenic | 30.0% | |
ATTACTTAGAAGGGAAACTA+AGG | - | chr1.4:6742329-6742348 | None:intergenic | 30.0% | |
CATGATGTAGATTTATCAAG+TGG | + | chr1.4:6743299-6743318 | MS.gene52445:intron | 30.0% | |
CGTCCAAAAATTATTAGACT+TGG | + | chr1.4:6742816-6742835 | MS.gene52445:intron | 30.0% | |
CGTTAGAAAATCGGTAAAAA+GGG | + | chr1.4:6744927-6744946 | MS.gene52445:intron | 30.0% | |
GTGTTATAAAGAAATCAGAG+TGG | - | chr1.4:6743761-6743780 | None:intergenic | 30.0% | |
GTTGATTAAGTGAATTGAAC+TGG | - | chr1.4:6742372-6742391 | None:intergenic | 30.0% | |
TAAAACAATCCCTTTGAATC+TGG | + | chr1.4:6742430-6742449 | MS.gene52445:intron | 30.0% | |
TAAACACTTTAGATTAGGCT+AGG | - | chr1.4:6742744-6742763 | None:intergenic | 30.0% | |
TAAAGATGAGAATGTTGTGT+TGG | + | chr1.4:6740236-6740255 | MS.gene52445:intron | 30.0% | |
TAAAGATGGAAATGTTACAG+TGG | + | chr1.4:6742044-6742063 | MS.gene52445:intron | 30.0% | |
TAGAACACTCGTTAGAAAAT+CGG | + | chr1.4:6744918-6744937 | MS.gene52445:intron | 30.0% | |
TAGGCCTACAAAAGAAATAA+TGG | - | chr1.4:6741515-6741534 | None:intergenic | 30.0% | |
TCAACTCACTATTCATTTGA+AGG | - | chr1.4:6739769-6739788 | None:intergenic | 30.0% | |
TCCTCATATTTCCAAAACAT+TGG | - | chr1.4:6744698-6744717 | None:intergenic | 30.0% | |
TCGTTAGAAAATCGGTAAAA+AGG | + | chr1.4:6744926-6744945 | MS.gene52445:intron | 30.0% | |
TGACAATCATGTATCATTGA+GGG | - | chr1.4:6744144-6744163 | None:intergenic | 30.0% | |
TTCAATTCCTACAAAAACTG+AGG | + | chr1.4:6743137-6743156 | MS.gene52445:intron | 30.0% | |
TTCCTAATTGAATGTGTGTT+TGG | + | chr1.4:6739640-6739659 | MS.gene52445:intron | 30.0% | |
TTCTTTACATCACCCAAAAT+GGG | - | chr1.4:6745144-6745163 | None:intergenic | 30.0% | |
TTTCAATTTGAACTCGAGAA+TGG | + | chr1.4:6742193-6742212 | MS.gene52445:intron | 30.0% | |
! | AAATAAGGAGTGAGAAGTAT+TGG | + | chr1.4:6744778-6744797 | MS.gene52445:intron | 30.0% |
! | ATTGGCATTTTAAACCAGAA+TGG | - | chr1.4:6744680-6744699 | None:intergenic | 30.0% |
! | CATGGTTTTTGTTAGTTAGA+AGG | + | chr1.4:6741698-6741717 | MS.gene52445:intron | 30.0% |
! | CTCATTCTAGTTATTAGACA+TGG | + | chr1.4:6741466-6741485 | MS.gene52445:intron | 30.0% |
! | GAAAATTTAAGATCAGCAGT+GGG | + | chr1.4:6744616-6744635 | MS.gene52445:intron | 30.0% |
! | GAATTACTTTGTTTAGCACT+GGG | + | chr1.4:6742935-6742954 | MS.gene52445:intron | 30.0% |
! | GTTTTTGTAGGAATTGAACA+AGG | - | chr1.4:6743135-6743154 | None:intergenic | 30.0% |
! | TCAATATCATGGTAATTTGC+AGG | + | chr1.4:6742547-6742566 | MS.gene52445:intron | 30.0% |
! | TGAATTACTTTGTTTAGCAC+TGG | + | chr1.4:6742934-6742953 | MS.gene52445:intron | 30.0% |
! | TGGAAATATGAGGATCTTTT+TGG | + | chr1.4:6744704-6744723 | MS.gene52445:intron | 30.0% |
! | TTACCTTCTTCATTTAGAAC+AGG | - | chr1.4:6744430-6744449 | None:intergenic | 30.0% |
! | TTTCTTAATGAAGTGCCTTT+AGG | + | chr1.4:6744742-6744761 | MS.gene52445:intron | 30.0% |
! | TTTTATAACCTGCTGATGTA+TGG | - | chr1.4:6743917-6743936 | None:intergenic | 30.0% |
! | TTTTGCAGACGAAACTTTTA+GGG | + | chr1.4:6739944-6739963 | MS.gene52445:intron | 30.0% |
! | TTTTTGCAGACGAAACTTTT+AGG | + | chr1.4:6739943-6739962 | MS.gene52445:intron | 30.0% |
!! | CTTGCCATTATTTCTTTTGT+AGG | + | chr1.4:6741508-6741527 | MS.gene52445:intron | 30.0% |
!! | GCAAAAATTGCATTTGCTAT+GGG | - | chr1.4:6742991-6743010 | None:intergenic | 30.0% |
!! | GGTTTAAAATGCCAATGTTT+TGG | + | chr1.4:6744684-6744703 | MS.gene52445:intron | 30.0% |
!! | TAGTTGTTGACTGGTTTATT+AGG | + | chr1.4:6740653-6740672 | MS.gene52445:intron | 30.0% |
!! | TCAAAGGGATTGTTTTACAA+GGG | - | chr1.4:6742427-6742446 | None:intergenic | 30.0% |
!! | TTCAAAGGGATTGTTTTACA+AGG | - | chr1.4:6742428-6742447 | None:intergenic | 30.0% |
!! | TTTTGTGAAATTTTCGGTGT+AGG | + | chr1.4:6739538-6739557 | MS.gene52445:intron | 30.0% |
!!! | TAAGGAATTTTTTTCCTGGT+TGG | + | chr1.4:6741943-6741962 | MS.gene52445:intron | 30.0% |
!!! | TGATTTTTTCGTACCTGATT+TGG | + | chr1.4:6740142-6740161 | MS.gene52445:intron | 30.0% |
AAAACTCTGTAGGGTCAATA+TGG | + | chr1.4:6744252-6744271 | MS.gene52445:intron | 35.0% | |
AAACCACTAGACAAGTAAGT+CGG | + | chr1.4:6742091-6742110 | MS.gene52445:intron | 35.0% | |
AAACCGTGTCCTATAATACA+TGG | - | chr1.4:6744406-6744425 | None:intergenic | 35.0% | |
AAACTAGACTTAGGTGGTTT+AGG | + | chr1.4:6740345-6740364 | MS.gene52445:intron | 35.0% | |
AAAGCCTTAAGAGAATTAGG+TGG | + | chr1.4:6745264-6745283 | MS.gene52445:intron | 35.0% | |
AACATAACAGACTTAGTGGT+CGG | - | chr1.4:6743083-6743102 | None:intergenic | 35.0% | |
AACATCTGATAGTTGTTGAC+TGG | + | chr1.4:6740644-6740663 | MS.gene52445:intron | 35.0% | |
AACTTAGACGCTCAAAGATT+AGG | - | chr1.4:6744343-6744362 | None:intergenic | 35.0% | |
AAGCCTTAAGAGAATTAGGT+GGG | + | chr1.4:6745265-6745284 | MS.gene52445:intron | 35.0% | |
ACCACTAAGTCTGTTATGTT+GGG | + | chr1.4:6743083-6743102 | MS.gene52445:intron | 35.0% | |
ACCTATAGTAGAAAAGATGG+CGG | + | chr1.4:6740322-6740341 | MS.gene52445:intron | 35.0% | |
ACTCCATTGCCATGTATTAT+AGG | + | chr1.4:6744394-6744413 | MS.gene52445:intron | 35.0% | |
ACTTAGACGCTCAAAGATTA+GGG | - | chr1.4:6744342-6744361 | None:intergenic | 35.0% | |
AGAATGTTGTGTTGGATGTT+TGG | + | chr1.4:6740244-6740263 | MS.gene52445:intron | 35.0% | |
AGCCAAACACACATTCAATT+AGG | - | chr1.4:6739645-6739664 | None:intergenic | 35.0% | |
AGTAAAGAGAGTAGATCAGA+TGG | + | chr1.4:6740397-6740416 | MS.gene52445:intron | 35.0% | |
AGTGTCATACATAAGTCACT+TGG | + | chr1.4:6744594-6744613 | MS.gene52445:intron | 35.0% | |
ATAATACATGGCAATGGAGT+CGG | - | chr1.4:6744394-6744413 | None:intergenic | 35.0% | |
ATGAGCAAGTATTTGTGCTT+TGG | + | chr1.4:6745102-6745121 | MS.gene52445:intron | 35.0% | |
ATGCTAGACAAGATAGGATT+TGG | + | chr1.4:6743324-6743343 | MS.gene52445:intron | 35.0% | |
CAATGCATGCATTAAGAGTT+AGG | + | chr1.4:6742684-6742703 | MS.gene52445:intron | 35.0% | |
CAATTTCAAGATCCCCTTTA+AGG | + | chr1.4:6742617-6742636 | MS.gene52445:intron | 35.0% | |
CATATATTGCAGAACGAATC+AGG | + | chr1.4:6740748-6740767 | MS.gene52445:CDS | 35.0% | |
CCTTAACAAGGATCACTTAA+GGG | - | chr1.4:6742470-6742489 | None:intergenic | 35.0% | |
CTAGAATGAGTGTTAAGCAA+AGG | - | chr1.4:6741456-6741475 | None:intergenic | 35.0% | |
CTATCCCATCATCAATATCA+TGG | + | chr1.4:6742536-6742555 | MS.gene52445:intron | 35.0% | |
CTGTGCAGATATCAAATACT+GGG | + | chr1.4:6743786-6743805 | MS.gene52445:intron | 35.0% | |
GACAATCATGTATCATTGAG+GGG | - | chr1.4:6744143-6744162 | None:intergenic | 35.0% | |
GAGTTCTTAACCAGATTCAA+AGG | - | chr1.4:6742443-6742462 | None:intergenic | 35.0% | |
GTGACAATCATGTATCATTG+AGG | - | chr1.4:6744145-6744164 | None:intergenic | 35.0% | |
GTTCTTTACATCACCCAAAA+TGG | - | chr1.4:6745145-6745164 | None:intergenic | 35.0% | |
GTTGCTTAAAGCGATAGATT+TGG | + | chr1.4:6742298-6742317 | MS.gene52445:intron | 35.0% | |
TAATTGAACCTCAGAAGATG+AGG | - | chr1.4:6744497-6744516 | None:intergenic | 35.0% | |
TATGAGTCTGCTGAGATTTA+CGG | + | chr1.4:6740914-6740933 | MS.gene52445:CDS | 35.0% | |
TCTGTGCAGATATCAAATAC+TGG | + | chr1.4:6743785-6743804 | MS.gene52445:intron | 35.0% | |
TGTCCTATAATACATGGCAA+TGG | - | chr1.4:6744400-6744419 | None:intergenic | 35.0% | |
TGTTGAAAAGCCACATTGAT+GGG | - | chr1.4:6743013-6743032 | None:intergenic | 35.0% | |
TTCATACTTGATTGCTTAGC+TGG | - | chr1.4:6742595-6742614 | None:intergenic | 35.0% | |
TTCGTGCTATAAAAATGCTG+AGG | + | chr1.4:6742768-6742787 | MS.gene52445:intron | 35.0% | |
TTGCCATGTATTATAGGACA+CGG | + | chr1.4:6744400-6744419 | MS.gene52445:intron | 35.0% | |
TTTATGTGTCTAGTATGCTC+TGG | + | chr1.4:6744005-6744024 | MS.gene52445:intron | 35.0% | |
TTTGTGTAATAGCTGCTGAA+GGG | + | chr1.4:6743829-6743848 | MS.gene52445:CDS | 35.0% | |
! | AGGGTTTAGAACTAAGCATT+TGG | - | chr1.4:6742888-6742907 | None:intergenic | 35.0% |
! | ATGCTTTTCAGAGAAGAGTT+TGG | + | chr1.4:6744194-6744213 | MS.gene52445:intron | 35.0% |
! | CATGTACTAAATCTTGGTGT+AGG | + | chr1.4:6743672-6743691 | MS.gene52445:intron | 35.0% |
! | CTGATTCGTTCTGCAATATA+TGG | - | chr1.4:6740750-6740769 | None:intergenic | 35.0% |
! | CTTTGTACCTCAGTTTTTGT+AGG | - | chr1.4:6743147-6743166 | None:intergenic | 35.0% |
! | GGAAAATTTAAGATCAGCAG+TGG | + | chr1.4:6744615-6744634 | MS.gene52445:intron | 35.0% |
! | GGACGCTCTTTAAAGAAATA+AGG | + | chr1.4:6744763-6744782 | MS.gene52445:intron | 35.0% |
! | GGCAAAAATTGCATTTGCTA+TGG | - | chr1.4:6742992-6743011 | None:intergenic | 35.0% |
! | TTGCCTGTTCTAAATGAAGA+AGG | + | chr1.4:6744424-6744443 | MS.gene52445:CDS | 35.0% |
! | TTTGCTGTGAGTGTATGTAT+AGG | - | chr1.4:6743257-6743276 | None:intergenic | 35.0% |
! | TTTTGCCATTGGATGCATAA+AGG | - | chr1.4:6743040-6743059 | None:intergenic | 35.0% |
!! | AAATGCTTAGTTCTAAACCC+TGG | + | chr1.4:6742887-6742906 | MS.gene52445:intron | 35.0% |
!! | AAGATGATATGATGGATGCT+TGG | - | chr1.4:6745292-6745311 | None:intergenic | 35.0% |
!! | AATTTTTGGACGATCTTTGC+AGG | - | chr1.4:6742808-6742827 | None:intergenic | 35.0% |
!! | ATGACACAAAATGATGGACT+TGG | - | chr1.4:6744167-6744186 | None:intergenic | 35.0% |
!! | ATTGATGATGGGATAGGATA+TGG | - | chr1.4:6742532-6742551 | None:intergenic | 35.0% |
!! | ATTTTTGGACGATCTTTGCA+GGG | - | chr1.4:6742807-6742826 | None:intergenic | 35.0% |
!! | CATGATATTGATGATGGGAT+AGG | - | chr1.4:6742538-6742557 | None:intergenic | 35.0% |
!! | TGAATGTGTGTTTGGCTTTA+CGG | + | chr1.4:6739648-6739667 | MS.gene52445:intron | 35.0% |
!! | TGATGATGGTGTATCTTTGA+GGG | + | chr1.4:6744217-6744236 | MS.gene52445:intron | 35.0% |
!! | TTCTTTAAAGAGCGTCCTAA+AGG | - | chr1.4:6744760-6744779 | None:intergenic | 35.0% |
!!! | GCCAATGTTTTGGAAATATG+AGG | + | chr1.4:6744694-6744713 | MS.gene52445:intron | 35.0% |
AAAATGGACGACTAATGTGG+CGG | + | chr1.4:6744314-6744333 | MS.gene52445:intron | 40.0% | |
AAAGAGAGTAGATCAGATGG+AGG | + | chr1.4:6740400-6740419 | MS.gene52445:intron | 40.0% | |
AAGAGAGTAGATCAGATGGA+GGG | + | chr1.4:6740401-6740420 | MS.gene52445:intron | 40.0% | |
AAGCATCAAATCAAAGACCC+AGG | + | chr1.4:6741587-6741606 | MS.gene52445:CDS | 40.0% | |
AAGTAAGTCGGTTGCAACAA+AGG | + | chr1.4:6742103-6742122 | MS.gene52445:intron | 40.0% | |
AATCAGACCACTAGAGAAAG+AGG | + | chr1.4:6740425-6740444 | MS.gene52445:intron | 40.0% | |
AATCTCGTGTTAGGTGGTTT+AGG | + | chr1.4:6743401-6743420 | MS.gene52445:intron | 40.0% | |
ACAAGGATCACTTAAGGGAT+TGG | - | chr1.4:6742465-6742484 | None:intergenic | 40.0% | |
ACCCAACATAACAGACTTAG+TGG | - | chr1.4:6743087-6743106 | None:intergenic | 40.0% | |
ACCTACCTTTATGCATCCAA+TGG | + | chr1.4:6743032-6743051 | MS.gene52445:intron | 40.0% | |
ACGAGGTTGAAGCATAAACT+CGG | + | chr1.4:6741019-6741038 | MS.gene52445:CDS | 40.0% | |
AGAAGCTGACAAAGGAAGTT+GGG | + | chr1.4:6744462-6744481 | MS.gene52445:CDS | 40.0% | |
AGATGGTAGAATCTCGTGTT+AGG | + | chr1.4:6743392-6743411 | MS.gene52445:intron | 40.0% | |
AGTCAGAAAGGATAATGCCT+CGG | - | chr1.4:6740895-6740914 | None:intergenic | 40.0% | |
AGTCTACATCAACTTTGACG+AGG | + | chr1.4:6741002-6741021 | MS.gene52445:CDS | 40.0% | |
AGTGGATGAGTGGTATTAGT+TGG | + | chr1.4:6742062-6742081 | MS.gene52445:intron | 40.0% | |
ATAACCTGCTGATGTATGGT+GGG | - | chr1.4:6743913-6743932 | None:intergenic | 40.0% | |
ATCCAAGATACTTCAACCGT+GGG | - | chr1.4:6741809-6741828 | None:intergenic | 40.0% | |
ATCTTTGAGCGTCTAAGTTG+AGG | + | chr1.4:6744344-6744363 | MS.gene52445:intron | 40.0% | |
ATTTACGGTGAAAATGCCCA+TGG | + | chr1.4:6740929-6740948 | MS.gene52445:CDS | 40.0% | |
CACTAAAGCACGATTACACT+TGG | - | chr1.4:6739916-6739935 | None:intergenic | 40.0% | |
CATACAAGTTACAGACACGA+GGG | - | chr1.4:6745073-6745092 | None:intergenic | 40.0% | |
CATTCTCCTTCGTAATCACT+TGG | + | chr1.4:6741131-6741150 | MS.gene52445:intron | 40.0% | |
CCCTTAAGTGATCCTTGTTA+AGG | + | chr1.4:6742467-6742486 | MS.gene52445:intron | 40.0% | |
CTTTACTACGTTCTCACAAC+AGG | + | chr1.4:6739973-6739992 | MS.gene52445:CDS | 40.0% | |
CTTTGTGTAATAGCTGCTGA+AGG | + | chr1.4:6743828-6743847 | MS.gene52445:CDS | 40.0% | |
GAAATGTTACAGTGGATGAG+TGG | + | chr1.4:6742052-6742071 | MS.gene52445:intron | 40.0% | |
GAATAAGCTTCACAGAAAGC+TGG | + | chr1.4:6745199-6745218 | MS.gene52445:intron | 40.0% | |
GAATCCAATTCTCATAGGGA+AGG | - | chr1.4:6742150-6742169 | None:intergenic | 40.0% | |
GACCACTAAGTCTGTTATGT+TGG | + | chr1.4:6743082-6743101 | MS.gene52445:intron | 40.0% | |
GACTAGACAGTAGACATGAT+AGG | + | chr1.4:6740270-6740289 | MS.gene52445:intron | 40.0% | |
GCAATAACTCGCGAACAAAA+GGG | - | chr1.4:6741386-6741405 | None:intergenic | 40.0% | |
GCCTTAACAAGGATCACTTA+AGG | - | chr1.4:6742471-6742490 | None:intergenic | 40.0% | |
GGAATACTGTGATATCACTC+AGG | + | chr1.4:6740020-6740039 | MS.gene52445:CDS | 40.0% | |
GGCATTCGTTATGTGTTCAT+TGG | + | chr1.4:6741562-6741581 | MS.gene52445:CDS | 40.0% | |
GTGTTGAAAAGCCACATTGA+TGG | - | chr1.4:6743014-6743033 | None:intergenic | 40.0% | |
GTTGAATGAGAAACATCAGC+AGG | - | chr1.4:6741092-6741111 | None:intergenic | 40.0% | |
TAATACATGGCAATGGAGTC+GGG | - | chr1.4:6744393-6744412 | None:intergenic | 40.0% | |
TATAACCTGCTGATGTATGG+TGG | - | chr1.4:6743914-6743933 | None:intergenic | 40.0% | |
TGCAATAACTCGCGAACAAA+AGG | - | chr1.4:6741387-6741406 | None:intergenic | 40.0% | |
TGCAGCATCATGCAACTAAT+GGG | + | chr1.4:6745348-6745367 | MS.gene52445:intron | 40.0% | |
TGTCTTGTATACATCCAACC+AGG | - | chr1.4:6741960-6741979 | None:intergenic | 40.0% | |
TGTTGTGTTGGATGTTTGGT+AGG | + | chr1.4:6740248-6740267 | MS.gene52445:intron | 40.0% | |
TTACATCACCCAAAATGGGA+GGG | - | chr1.4:6745140-6745159 | None:intergenic | 40.0% | |
TTCTACCATCTACTCACAAC+TGG | - | chr1.4:6743383-6743402 | None:intergenic | 40.0% | |
TTGCAGCATCATGCAACTAA+TGG | + | chr1.4:6745347-6745366 | MS.gene52445:intron | 40.0% | |
TTTACATCACCCAAAATGGG+AGG | - | chr1.4:6745141-6745160 | None:intergenic | 40.0% | |
TTTACGGTGAAAATGCCCAT+GGG | + | chr1.4:6740930-6740949 | MS.gene52445:CDS | 40.0% | |
! | ACAGTTGTGTTGATCCATTC+TGG | + | chr1.4:6744663-6744682 | MS.gene52445:intron | 40.0% |
! | AGCATAAACTCGGAGGATTT+TGG | + | chr1.4:6741029-6741048 | MS.gene52445:CDS | 40.0% |
! | CAATCTTTGAGGGACTAAGT+TGG | + | chr1.4:6744283-6744302 | MS.gene52445:intron | 40.0% |
! | CTCGTGTCTGTAACTTGTAT+GGG | + | chr1.4:6745072-6745091 | MS.gene52445:intron | 40.0% |
! | GCAATTTTTGCCCATCAATG+TGG | + | chr1.4:6743000-6743019 | MS.gene52445:intron | 40.0% |
! | GTATACAGGGATTTTGCCAT+TGG | - | chr1.4:6743051-6743070 | None:intergenic | 40.0% |
! | TAGAAGGAGAAGAAAGCATG+TGG | + | chr1.4:6741714-6741733 | MS.gene52445:intron | 40.0% |
! | TATTAGGTTGCAGGACCTTA+TGG | + | chr1.4:6740669-6740688 | MS.gene52445:intron | 40.0% |
! | TCCGCCATCTTTTCTACTAT+AGG | - | chr1.4:6740326-6740345 | None:intergenic | 40.0% |
! | TCTTTGAGCGTCTAAGTTGA+GGG | + | chr1.4:6744345-6744364 | MS.gene52445:intron | 40.0% |
!! | AGAGAAGAGTTTGGTGATGA+TGG | + | chr1.4:6744203-6744222 | MS.gene52445:intron | 40.0% |
!! | GTGATGATGGTGTATCTTTG+AGG | + | chr1.4:6744216-6744235 | MS.gene52445:intron | 40.0% |
!! | TGACTGGTTTATTAGGTTGC+AGG | + | chr1.4:6740660-6740679 | MS.gene52445:intron | 40.0% |
AAGTCTGTTATGTTGGGTGC+TGG | + | chr1.4:6743089-6743108 | MS.gene52445:intron | 45.0% | |
AATCCAGTCCTCCAAAGGTT+CGG | + | chr1.4:6744070-6744089 | MS.gene52445:intron | 45.0% | |
ACCTCCTTCCCTATGAGAAT+TGG | + | chr1.4:6742143-6742162 | MS.gene52445:intron | 45.0% | |
ACTCTGTAGGGTCAATATGG+TGG | + | chr1.4:6744255-6744274 | MS.gene52445:intron | 45.0% | |
AGAGAGAGATACCGAAGAGA+TGG | - | chr1.4:6739461-6739480 | None:intergenic | 45.0% | |
AGGTCTTCCTCTTTCTCTAG+TGG | - | chr1.4:6740435-6740454 | None:intergenic | 45.0% | |
AGGTTGAAGCATAAACTCGG+AGG | + | chr1.4:6741022-6741041 | MS.gene52445:CDS | 45.0% | |
ATACCATGCCACATATCCCA+CGG | + | chr1.4:6741790-6741809 | MS.gene52445:intron | 45.0% | |
ATTCGGAGCCATTTCTTCCA+AGG | - | chr1.4:6739287-6739306 | None:intergenic | 45.0% | |
ATTTCTTCTGCATCTGCCTC+AGG | + | chr1.4:6740977-6740996 | MS.gene52445:CDS | 45.0% | |
CAACTTCCTTTGTCAGCTTC+TGG | - | chr1.4:6744463-6744482 | None:intergenic | 45.0% | |
CAGAAGCTGACAAAGGAAGT+TGG | + | chr1.4:6744461-6744480 | MS.gene52445:CDS | 45.0% | |
CAGCAGACTCATAGTCAGAA+AGG | - | chr1.4:6740907-6740926 | None:intergenic | 45.0% | |
CATATATCCAAACGTGCTGC+AGG | + | chr1.4:6741541-6741560 | MS.gene52445:CDS | 45.0% | |
CCATACAAGTTACAGACACG+AGG | - | chr1.4:6745074-6745093 | None:intergenic | 45.0% | |
CTTATCCCAGTAAGTGGGAT+CGG | - | chr1.4:6740549-6740568 | None:intergenic | 45.0% | |
GACTGAGAAAATTCCCCAGT+TGG | - | chr1.4:6741663-6741682 | None:intergenic | 45.0% | |
GATCCAAGATACTTCAACCG+TGG | - | chr1.4:6741810-6741829 | None:intergenic | 45.0% | |
GATCTTTGCAGGGAAGATCA+AGG | - | chr1.4:6742797-6742816 | None:intergenic | 45.0% | |
GCAGCATCATGCAACTAATG+GGG | + | chr1.4:6745349-6745368 | MS.gene52445:intron | 45.0% | |
GCCATTGGATGCATAAAGGT+AGG | - | chr1.4:6743036-6743055 | None:intergenic | 45.0% | |
GGACCCACCTAATTCTCTTA+AGG | - | chr1.4:6745271-6745290 | None:intergenic | 45.0% | |
GGTGGCACTTCAATCTTTGA+GGG | + | chr1.4:6744273-6744292 | MS.gene52445:intron | 45.0% | |
GTCAGAAAGGATAATGCCTC+GGG | - | chr1.4:6740894-6740913 | None:intergenic | 45.0% | |
GTGGAGGATAAGTCAAGCAA+GGG | + | chr1.4:6741733-6741752 | MS.gene52445:intron | 45.0% | |
GTGGTCATGCTAGACAAGAT+AGG | + | chr1.4:6743318-6743337 | MS.gene52445:intron | 45.0% | |
TACAATGAACAAAGCACGCC+TGG | - | chr1.4:6740712-6740731 | None:intergenic | 45.0% | |
TACTTCAACCGTGGGATATG+TGG | - | chr1.4:6741801-6741820 | None:intergenic | 45.0% | |
TAGAAACGGCAAGAGAGTTG+AGG | + | chr1.4:6740295-6740314 | MS.gene52445:intron | 45.0% | |
TAGCACCAGTTGTGAGTAGA+TGG | + | chr1.4:6743375-6743394 | MS.gene52445:intron | 45.0% | |
TCCAATTCTCATAGGGAAGG+AGG | - | chr1.4:6742147-6742166 | None:intergenic | 45.0% | |
TGAGAAAATTCCCCAGTTGG+CGG | - | chr1.4:6741660-6741679 | None:intergenic | 45.0% | |
TGGAGGATAAGTCAAGCAAG+GGG | + | chr1.4:6741734-6741753 | MS.gene52445:intron | 45.0% | |
TGGTAGAATCTCGTGTTAGG+TGG | + | chr1.4:6743395-6743414 | MS.gene52445:intron | 45.0% | |
TGGTGGCACTTCAATCTTTG+AGG | + | chr1.4:6744272-6744291 | MS.gene52445:intron | 45.0% | |
TGTGGAGGATAAGTCAAGCA+AGG | + | chr1.4:6741732-6741751 | MS.gene52445:intron | 45.0% | |
! | AAGGAGAAGAAAGCATGTGG+AGG | + | chr1.4:6741717-6741736 | MS.gene52445:intron | 45.0% |
! | ACAGGCATCGTAAACGAAAG+AGG | - | chr1.4:6739424-6739443 | None:intergenic | 45.0% |
! | AGTTGATGTAGACTGTCCTG+AGG | - | chr1.4:6740996-6741015 | None:intergenic | 45.0% |
! | ATCCCACGGTTGAAGTATCT+TGG | + | chr1.4:6741804-6741823 | MS.gene52445:intron | 45.0% |
! | CAACCGACTTACTTGTCTAG+TGG | - | chr1.4:6742097-6742116 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCAGTAAGT+GGG | - | chr1.4:6740554-6740573 | None:intergenic | 45.0% |
! | CCTCGTGTCTGTAACTTGTA+TGG | + | chr1.4:6745071-6745090 | MS.gene52445:intron | 45.0% |
! | GGTTGCATTTGGTTCAGAGA+TGG | + | chr1.4:6741050-6741069 | MS.gene52445:CDS | 45.0% |
! | GTTCCAAACCCTCCCATTTT+GGG | + | chr1.4:6745129-6745148 | MS.gene52445:intron | 45.0% |
! | TGTTCCAAACCCTCCCATTT+TGG | + | chr1.4:6745128-6745147 | MS.gene52445:intron | 45.0% |
! | TTTGGTTCAGAGATGGCCTA+CGG | + | chr1.4:6741057-6741076 | MS.gene52445:CDS | 45.0% |
!! | AACAAAAGGGAGCATCTGGT+GGG | - | chr1.4:6741373-6741392 | None:intergenic | 45.0% |
!! | AGATGGCGGAAACTAGACTT+AGG | + | chr1.4:6740336-6740355 | MS.gene52445:intron | 45.0% |
!! | AGTTCTAGAATTGCTTCCCG+AGG | + | chr1.4:6740875-6740894 | MS.gene52445:intron | 45.0% |
!! | ATCGACGTCTGTAACGGATT+CGG | - | chr1.4:6739304-6739323 | None:intergenic | 45.0% |
!! | CAGCACTGGTAGTTACATGT+TGG | - | chr1.4:6742854-6742873 | None:intergenic | 45.0% |
!! | TCGGTCAGCATTGGTATACA+GGG | - | chr1.4:6743064-6743083 | None:intergenic | 45.0% |
!! | TGATGTATGGTGGGTTGCAA+AGG | - | chr1.4:6743904-6743923 | None:intergenic | 45.0% |
!! | TTGGGTGTTGACGATTACTC+AGG | - | chr1.4:6745394-6745413 | None:intergenic | 45.0% |
!!! | CGGAGGATTTTGGTTGCATT+TGG | + | chr1.4:6741039-6741058 | MS.gene52445:CDS | 45.0% |
ACTTAGTGGTCGGTCAGCAT+TGG | - | chr1.4:6743073-6743092 | None:intergenic | 50.0% | |
AGTAAGTGGGATCGGCTACA+TGG | - | chr1.4:6740541-6740560 | None:intergenic | 50.0% | |
ATCATTTCCGGTTGAGCAGC+CGG | - | chr1.4:6739372-6739391 | None:intergenic | 50.0% | |
ATCCAGTCCTCCAAAGGTTC+GGG | + | chr1.4:6744071-6744090 | MS.gene52445:intron | 50.0% | |
ATGTAGCCGATCCCACTTAC+TGG | + | chr1.4:6740540-6740559 | MS.gene52445:intron | 50.0% | |
CAGCAGGAGTAATGTACCGT+AGG | - | chr1.4:6741076-6741095 | None:intergenic | 50.0% | |
CCACTTACTGGGATAAGGCT+TGG | + | chr1.4:6740552-6740571 | MS.gene52445:intron | 50.0% | |
CCATGGGAGTAGTAGTTCTC+GGG | + | chr1.4:6740946-6740965 | MS.gene52445:CDS | 50.0% | |
CCCATGGGAGTAGTAGTTCT+CGG | + | chr1.4:6740945-6740964 | MS.gene52445:CDS | 50.0% | |
CCGAGAACTACTACTCCCAT+GGG | - | chr1.4:6740948-6740967 | None:intergenic | 50.0% | |
CGATCCCACTTACTGGGATA+AGG | + | chr1.4:6740547-6740566 | MS.gene52445:intron | 50.0% | |
CGGTGTAGGTACTAGAGTTG+CGG | + | chr1.4:6739552-6739571 | MS.gene52445:intron | 50.0% | |
CTCTGGATCCTCATCTTCTG+AGG | + | chr1.4:6744486-6744505 | MS.gene52445:CDS | 50.0% | |
GACAAAGGAAGTTGGGTCTC+TGG | + | chr1.4:6744469-6744488 | MS.gene52445:CDS | 50.0% | |
GAGAGATACCGAAGAGATGG+CGG | - | chr1.4:6739458-6739477 | None:intergenic | 50.0% | |
GATCGCTGCTTCAGTTCATC+AGG | + | chr1.4:6743875-6743894 | MS.gene52445:CDS | 50.0% | |
GATTAGGCTAGGATGACCCT+TGG | - | chr1.4:6742733-6742752 | None:intergenic | 50.0% | |
GCATCTCCAGAAGCTGACAA+AGG | + | chr1.4:6744454-6744473 | MS.gene52445:CDS | 50.0% | |
GCATGTCGAGAGAAGACTTG+TGG | + | chr1.4:6740367-6740386 | MS.gene52445:intron | 50.0% | |
GGGCACAGCTCACTAATGTT+AGG | + | chr1.4:6742955-6742974 | MS.gene52445:intron | 50.0% | |
GGTGTAGGAGGAAGTCCATA+AGG | - | chr1.4:6740687-6740706 | None:intergenic | 50.0% | |
TACGTTCTCACAACAGGCTC+AGG | + | chr1.4:6739979-6739998 | MS.gene52445:CDS | 50.0% | |
TCACCCAAAATGGGAGGGTT+TGG | - | chr1.4:6745135-6745154 | None:intergenic | 50.0% | |
TCAGCTGCTCGCATCATTTC+CGG | - | chr1.4:6739384-6739403 | None:intergenic | 50.0% | |
TGCGGTGGCTTATCAAAACG+AGG | + | chr1.4:6739570-6739589 | MS.gene52445:CDS | 50.0% | |
TGGCGGAAACTAGACTTAGG+TGG | + | chr1.4:6740339-6740358 | MS.gene52445:intron | 50.0% | |
TGGGGTCACCTTGGAAGAAA+TGG | + | chr1.4:6739276-6739295 | MS.gene52445:CDS | 50.0% | |
TGTAGCCGATCCCACTTACT+GGG | + | chr1.4:6740541-6740560 | MS.gene52445:intron | 50.0% | |
TGTAGGTACTAGAGTTGCGG+TGG | + | chr1.4:6739555-6739574 | MS.gene52445:intron | 50.0% | |
! | ACCTTTGGAGGACTGGATTG+AGG | - | chr1.4:6744069-6744088 | None:intergenic | 50.0% |
! | AGCTGCATCGACGTCTGTAA+CGG | - | chr1.4:6739310-6739329 | None:intergenic | 50.0% |
! | AGGACAACAGACACTTGGTG+AGG | + | chr1.4:6739999-6740018 | MS.gene52445:CDS | 50.0% |
! | CCAAGCCTTATCCCAGTAAG+TGG | - | chr1.4:6740555-6740574 | None:intergenic | 50.0% |
! | CCTTTGGAGGACTGGATTGA+GGG | - | chr1.4:6744068-6744087 | None:intergenic | 50.0% |
! | TGTGATAACGCCCGAACCTT+TGG | - | chr1.4:6744084-6744103 | None:intergenic | 50.0% |
!! | ACAAAAGGGAGCATCTGGTG+GGG | - | chr1.4:6741372-6741391 | None:intergenic | 50.0% |
!! | GAACAAAAGGGAGCATCTGG+TGG | - | chr1.4:6741374-6741393 | None:intergenic | 50.0% |
!! | GTCGGTCAGCATTGGTATAC+AGG | - | chr1.4:6743065-6743084 | None:intergenic | 50.0% |
ACGAATGCCTGCAGCACGTT+TGG | - | chr1.4:6741551-6741570 | None:intergenic | 55.0% | |
ATGAACAAAGCACGCCTGGC+TGG | - | chr1.4:6740708-6740727 | None:intergenic | 55.0% | |
CAACCGTGGGATATGTGGCA+TGG | - | chr1.4:6741796-6741815 | None:intergenic | 55.0% | |
CACCCAACAGCTACTTCCTG+TGG | + | chr1.4:6745407-6745426 | MS.gene52445:CDS | 55.0% | |
CCCGAGAACTACTACTCCCA+TGG | - | chr1.4:6740949-6740968 | None:intergenic | 55.0% | |
CCCTCAATCCAGTCCTCCAA+AGG | + | chr1.4:6744065-6744084 | MS.gene52445:intron | 55.0% | |
GACGCTTTCCGCCATCTCTT+CGG | + | chr1.4:6739447-6739466 | MS.gene52445:intron | 55.0% | |
GATAACGCCCGAACCTTTGG+AGG | - | chr1.4:6744081-6744100 | None:intergenic | 55.0% | |
GCAACCCACCATACATCAGC+AGG | + | chr1.4:6743906-6743925 | MS.gene52445:CDS | 55.0% | |
GGCCACAGGAAGTAGCTGTT+GGG | - | chr1.4:6745412-6745431 | None:intergenic | 55.0% | |
GGCTCAGGACAACAGACACT+TGG | + | chr1.4:6739994-6740013 | MS.gene52445:CDS | 55.0% | |
TGCAGCTCCGAGTACTAGCA+CGG | + | chr1.4:6739323-6739342 | MS.gene52445:CDS | 55.0% | |
TGGAAGTCAGCACTCAGCAC+TGG | - | chr1.4:6742868-6742887 | None:intergenic | 55.0% | |
TGGCCACAGGAAGTAGCTGT+TGG | - | chr1.4:6745413-6745432 | None:intergenic | 55.0% | |
TTGTCGCACATTCAGCGCCA+GGG | - | chr1.4:6742907-6742926 | None:intergenic | 55.0% | |
!! | AAGTATGATGGGCCGCCAAC+TGG | + | chr1.4:6741645-6741664 | MS.gene52445:intron | 55.0% |
!! | AGTATGATGGGCCGCCAACT+GGG | + | chr1.4:6741646-6741665 | MS.gene52445:intron | 55.0% |
!! | CGCGAACAAAAGGGAGCATC+TGG | - | chr1.4:6741377-6741396 | None:intergenic | 55.0% |
AAAGCACGCCTGGCTGGTGT+AGG | - | chr1.4:6740702-6740721 | None:intergenic | 60.0% | |
AGCTCCGAGTACTAGCACGG+CGG | + | chr1.4:6739326-6739345 | MS.gene52445:CDS | 60.0% | |
ATTTCCGGTTGAGCAGCCGG+AGG | - | chr1.4:6739369-6739388 | None:intergenic | 60.0% | |
CTTGTCGCACATTCAGCGCC+AGG | - | chr1.4:6742908-6742927 | None:intergenic | 60.0% | |
GACTTCCTCCTACACCAGCC+AGG | + | chr1.4:6740691-6740710 | MS.gene52445:CDS | 60.0% | |
GTTTCCTCCGGCTGCTCAAC+CGG | + | chr1.4:6739362-6739381 | MS.gene52445:CDS | 60.0% | |
!! | GTATGATGGGCCGCCAACTG+GGG | + | chr1.4:6741647-6741666 | MS.gene52445:intron | 60.0% |
GGAGTCACGGCGGTTTCCTC+CGG | + | chr1.4:6739350-6739369 | MS.gene52445:CDS | 65.0% | |
TCCGAGTACTAGCACGGCGG+CGG | + | chr1.4:6739329-6739348 | MS.gene52445:CDS | 65.0% | |
TCCGCCGCCGTGCTAGTACT+CGG | - | chr1.4:6739333-6739352 | None:intergenic | 65.0% | |
! | CGCCCGAACCTTTGGAGGAC+TGG | - | chr1.4:6744076-6744095 | None:intergenic | 65.0% |
!! | ATGGCGGAAAGCGTCGCGAC+AGG | - | chr1.4:6739442-6739461 | None:intergenic | 65.0% |
CTAGCACGGCGGCGGAGTCA+CGG | + | chr1.4:6739337-6739356 | MS.gene52445:CDS | 70.0% | |
GCACGCCTGGCTGGTGTAGG+AGG | - | chr1.4:6740699-6740718 | None:intergenic | 70.0% | |
! | GCACGGCGGCGGAGTCACGG+CGG | + | chr1.4:6739340-6739359 | MS.gene52445:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 6739270 | 6745444 | 6739270 | ID=MS.gene52445 |
chr1.4 | mRNA | 6739270 | 6745444 | 6739270 | ID=MS.gene52445.t1;Parent=MS.gene52445 |
chr1.4 | exon | 6739270 | 6739441 | 6739270 | ID=MS.gene52445.t1.exon1;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6739270 | 6739441 | 6739270 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6739560 | 6739591 | 6739560 | ID=MS.gene52445.t1.exon2;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6739560 | 6739591 | 6739560 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6739952 | 6740041 | 6739952 | ID=MS.gene52445.t1.exon3;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6739952 | 6740041 | 6739952 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6740675 | 6740769 | 6740675 | ID=MS.gene52445.t1.exon4;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6740675 | 6740769 | 6740675 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6740877 | 6741078 | 6740877 | ID=MS.gene52445.t1.exon5;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6740877 | 6741078 | 6740877 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6741378 | 6741447 | 6741378 | ID=MS.gene52445.t1.exon6;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6741378 | 6741447 | 6741378 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6741530 | 6741608 | 6741530 | ID=MS.gene52445.t1.exon7;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6741530 | 6741608 | 6741530 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6743794 | 6743927 | 6743794 | ID=MS.gene52445.t1.exon8;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6743794 | 6743927 | 6743794 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6744416 | 6744507 | 6744416 | ID=MS.gene52445.t1.exon9;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6744416 | 6744507 | 6744416 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
chr1.4 | exon | 6745353 | 6745444 | 6745353 | ID=MS.gene52445.t1.exon10;Parent=MS.gene52445.t1 |
chr1.4 | CDS | 6745353 | 6745444 | 6745353 | ID=cds.MS.gene52445.t1;Parent=MS.gene52445.t1 |
Gene Sequence |
Protein sequence |