Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010408.t1 | XP_003611828.1 | 92.8 | 263 | 19 | 0 | 1 | 263 | 1 | 263 | 3.10E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010408.t1 | O80477 | 45.8 | 264 | 132 | 6 | 4 | 262 | 5 | 262 | 2.9e-60 | 233.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010408.t1 | G7K9E3 | 92.8 | 263 | 19 | 0 | 1 | 263 | 1 | 263 | 2.2e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010408 | MS.gene041151 | PPI |
| MS.gene047689 | MS.gene010408 | PPI |
| MS.gene87350 | MS.gene010408 | PPI |
| MS.gene010408 | MS.gene011884 | PPI |
| MS.gene010408 | MS.gene44962 | PPI |
| MS.gene010412 | MS.gene010408 | PPI |
| MS.gene28543 | MS.gene010408 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010408.t1 | MTR_5g018300 | 92.776 | 263 | 19 | 0 | 1 | 263 | 1 | 263 | 0.0 | 516 |
| MS.gene010408.t1 | MTR_5g018320 | 87.500 | 256 | 32 | 0 | 8 | 263 | 5 | 260 | 6.28e-173 | 477 |
| MS.gene010408.t1 | MTR_5g018280 | 86.692 | 263 | 34 | 1 | 1 | 263 | 1 | 262 | 2.84e-172 | 476 |
| MS.gene010408.t1 | MTR_8g007675 | 55.469 | 256 | 112 | 2 | 8 | 262 | 32 | 286 | 3.02e-98 | 289 |
| MS.gene010408.t1 | MTR_8g008500 | 53.846 | 260 | 115 | 4 | 7 | 262 | 26 | 284 | 1.14e-93 | 277 |
| MS.gene010408.t1 | MTR_8g008660 | 50.584 | 257 | 122 | 3 | 7 | 262 | 26 | 278 | 5.06e-90 | 268 |
| MS.gene010408.t1 | MTR_8g008505 | 51.362 | 257 | 122 | 3 | 7 | 262 | 27 | 281 | 5.11e-90 | 268 |
| MS.gene010408.t1 | MTR_3g464040 | 50.973 | 257 | 121 | 3 | 7 | 262 | 18 | 270 | 5.51e-89 | 265 |
| MS.gene010408.t1 | MTR_8g007670 | 47.490 | 259 | 133 | 3 | 6 | 262 | 5 | 262 | 4.02e-81 | 244 |
| MS.gene010408.t1 | MTR_8g079120 | 43.820 | 267 | 138 | 4 | 1 | 262 | 1 | 260 | 9.99e-76 | 231 |
| MS.gene010408.t1 | MTR_8g007670 | 42.471 | 259 | 102 | 4 | 6 | 262 | 5 | 218 | 2.16e-65 | 203 |
| MS.gene010408.t1 | MTR_5g018350 | 39.231 | 260 | 147 | 4 | 6 | 262 | 5 | 256 | 4.83e-61 | 193 |
| MS.gene010408.t1 | MTR_5g018365 | 39.768 | 259 | 147 | 3 | 6 | 262 | 10 | 261 | 3.08e-60 | 191 |
| MS.gene010408.t1 | MTR_7g015220 | 38.095 | 252 | 152 | 2 | 8 | 259 | 124 | 371 | 2.30e-52 | 174 |
| MS.gene010408.t1 | MTR_8g079120 | 44.509 | 173 | 86 | 3 | 1 | 168 | 43 | 210 | 8.79e-49 | 160 |
| MS.gene010408.t1 | MTR_3g005410 | 34.252 | 254 | 162 | 3 | 7 | 259 | 93 | 342 | 2.59e-47 | 160 |
| MS.gene010408.t1 | MTR_5g068100 | 34.909 | 275 | 145 | 6 | 3 | 262 | 25 | 280 | 2.60e-44 | 151 |
| MS.gene010408.t1 | MTR_3g093730 | 34.646 | 254 | 161 | 2 | 6 | 259 | 34 | 282 | 3.62e-41 | 143 |
| MS.gene010408.t1 | MTR_3g093730 | 31.102 | 254 | 125 | 4 | 6 | 259 | 34 | 237 | 2.03e-32 | 119 |
| MS.gene010408.t1 | MTR_5g008130 | 41.772 | 79 | 45 | 1 | 185 | 262 | 2 | 80 | 2.42e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010408.t1 | AT2G23610 | 45.455 | 264 | 133 | 5 | 4 | 262 | 5 | 262 | 1.96e-78 | 238 |
| MS.gene010408.t1 | AT2G23560 | 45.693 | 267 | 132 | 6 | 1 | 262 | 1 | 259 | 4.26e-75 | 229 |
| MS.gene010408.t1 | AT2G23620 | 45.211 | 261 | 134 | 5 | 6 | 262 | 7 | 262 | 9.01e-75 | 229 |
| MS.gene010408.t1 | AT3G50440 | 42.969 | 256 | 141 | 3 | 9 | 262 | 22 | 274 | 3.01e-71 | 220 |
| MS.gene010408.t1 | AT2G23600 | 42.366 | 262 | 140 | 5 | 6 | 262 | 7 | 262 | 1.01e-69 | 216 |
| MS.gene010408.t1 | AT2G23600 | 42.366 | 262 | 140 | 5 | 6 | 262 | 22 | 277 | 1.52e-69 | 216 |
| MS.gene010408.t1 | AT4G37150 | 42.424 | 264 | 134 | 6 | 7 | 262 | 2 | 255 | 3.62e-69 | 214 |
| MS.gene010408.t1 | AT2G23580 | 43.820 | 267 | 140 | 5 | 1 | 262 | 1 | 262 | 1.47e-68 | 213 |
| MS.gene010408.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 8 | 269 | 1.64e-66 | 208 |
| MS.gene010408.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 1.81e-66 | 207 |
| MS.gene010408.t1 | AT2G23590 | 38.372 | 258 | 149 | 2 | 5 | 262 | 24 | 271 | 1.16e-63 | 201 |
| MS.gene010408.t1 | AT2G23610 | 40.385 | 260 | 107 | 5 | 4 | 262 | 5 | 217 | 2.59e-62 | 195 |
| MS.gene010408.t1 | AT5G10300 | 38.113 | 265 | 149 | 4 | 4 | 262 | 2 | 257 | 1.40e-57 | 184 |
| MS.gene010408.t1 | AT1G26360 | 36.965 | 257 | 157 | 2 | 3 | 259 | 185 | 436 | 7.70e-52 | 175 |
| MS.gene010408.t1 | AT2G23550 | 38.346 | 266 | 127 | 5 | 1 | 262 | 1 | 233 | 1.18e-50 | 166 |
| MS.gene010408.t1 | AT3G29770 | 37.945 | 253 | 153 | 2 | 7 | 259 | 137 | 385 | 1.70e-50 | 170 |
| MS.gene010408.t1 | AT5G58310 | 34.221 | 263 | 161 | 4 | 6 | 261 | 3 | 260 | 8.35e-49 | 162 |
| MS.gene010408.t1 | AT1G69240 | 35.632 | 261 | 155 | 5 | 4 | 259 | 184 | 436 | 3.45e-47 | 163 |
| MS.gene010408.t1 | AT1G33990 | 33.984 | 256 | 164 | 3 | 5 | 259 | 94 | 345 | 7.22e-47 | 159 |
| MS.gene010408.t1 | AT4G09900 | 32.283 | 254 | 167 | 3 | 7 | 259 | 97 | 346 | 4.14e-46 | 157 |
| MS.gene010408.t1 | AT2G23600 | 44.643 | 168 | 84 | 4 | 6 | 168 | 22 | 185 | 4.37e-45 | 150 |
| MS.gene010408.t1 | AT4G16690 | 35.156 | 256 | 144 | 4 | 8 | 255 | 12 | 253 | 1.25e-44 | 151 |
| MS.gene010408.t1 | AT2G23580 | 46.199 | 171 | 84 | 4 | 1 | 166 | 1 | 168 | 2.08e-44 | 149 |
| MS.gene010408.t1 | AT3G10870 | 35.178 | 253 | 161 | 3 | 8 | 259 | 20 | 270 | 4.37e-42 | 145 |
| MS.gene010408.t1 | AT2G23550 | 46.199 | 171 | 84 | 4 | 1 | 166 | 8 | 175 | 1.28e-41 | 142 |
| MS.gene010408.t1 | AT4G37140 | 48.305 | 118 | 61 | 0 | 7 | 124 | 2 | 119 | 1.23e-40 | 137 |
| MS.gene010408.t1 | AT5G10300 | 38.095 | 210 | 104 | 4 | 4 | 207 | 2 | 191 | 1.79e-40 | 139 |
| MS.gene010408.t1 | AT2G23570 | 40.884 | 181 | 102 | 3 | 84 | 262 | 1 | 178 | 1.82e-34 | 122 |
| MS.gene010408.t1 | AT4G37140 | 50.549 | 91 | 45 | 0 | 7 | 97 | 2 | 92 | 2.20e-32 | 115 |
| MS.gene010408.t1 | AT3G29770 | 41.667 | 72 | 42 | 0 | 8 | 79 | 138 | 209 | 8.70e-16 | 75.5 |
Find 59 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.4:-11070247 | MS.gene010408:CDS |
| AACCGTTGATTGAATTTCTA+AGG | 0.235120 | 5.4:-11073345 | MS.gene010408:CDS |
| GAACCATTTGGTTTATCATT+TGG | 0.243454 | 5.4:+11070259 | None:intergenic |
| GCTCTAACACTTTGTCTTGT+TGG | 0.268832 | 5.4:+11069920 | None:intergenic |
| AACCATTTGGTTTATCATTT+GGG | 0.271934 | 5.4:+11070260 | None:intergenic |
| ACACTAGACATGGCTGCTTC+TGG | 0.272663 | 5.4:-11073418 | MS.gene010408:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5.4:-11073511 | MS.gene010408:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.4:+11070247 | None:intergenic |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.4:+11073388 | None:intergenic |
| CACTAGACATGGCTGCTTCT+GGG | 0.371034 | 5.4:-11073417 | MS.gene010408:CDS |
| AGATATGCACAAAGCTCTTT+CGG | 0.381008 | 5.4:+11069808 | None:intergenic |
| CAGCTTGGACACAAAGATTA+CGG | 0.386498 | 5.4:-11070293 | MS.gene010408:CDS |
| GTTACTTTGTTAAAATCTGC+TGG | 0.420158 | 5.4:-11073454 | MS.gene010408:CDS |
| GCTCATGCACTTGCTTTGGA+TGG | 0.429708 | 5.4:+11073392 | None:intergenic |
| CCCTTGCATTGTCATTACTA+AGG | 0.446862 | 5.4:-11070038 | MS.gene010408:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5.4:-11073486 | MS.gene010408:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5.4:+11069865 | None:intergenic |
| CGTAATCTTTGTGTCCAAGC+TGG | 0.484193 | 5.4:+11070294 | None:intergenic |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5.4:-11070021 | MS.gene010408:CDS |
| AGCCCAAATGATAAACCAAA+TGG | 0.499816 | 5.4:-11070262 | MS.gene010408:CDS |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5.4:-11073479 | MS.gene010408:CDS |
| TTGGCACACAATGAACACTT+TGG | 0.501510 | 5.4:+11069939 | None:intergenic |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5.4:-11073499 | MS.gene010408:CDS |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5.4:-11070029 | MS.gene010408:CDS |
| AGATTCAAGAAGGATAGATC+AGG | 0.520116 | 5.4:+11073193 | None:intergenic |
| GCCTTAGTAATGACAATGCA+AGG | 0.522441 | 5.4:+11070037 | None:intergenic |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5.4:-11073492 | MS.gene010408:CDS |
| GACCTTAGAAATTCAATCAA+CGG | 0.528748 | 5.4:+11073343 | None:intergenic |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5.4:-11073498 | MS.gene010408:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.4:-11073298 | MS.gene010408:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.4:-11073389 | MS.gene010408:CDS |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5.4:+11070015 | None:intergenic |
| AACTTGGTTGCTAAGAATTG+TGG | 0.545480 | 5.4:+11070223 | None:intergenic |
| TGGAGATAGTTGATACAACT+TGG | 0.547501 | 5.4:+11070207 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.4:+11073255 | None:intergenic |
| AGGATAACTCTCTGCTCTTG+TGG | 0.563220 | 5.4:+11073316 | None:intergenic |
| GTAATGACAATGCAAGGGAC+AGG | 0.570287 | 5.4:+11070043 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.4:-11073295 | MS.gene010408:CDS |
| ACAAAGAATTGATTCCAGCT+TGG | 0.573694 | 5.4:-11070308 | MS.gene010408:CDS |
| GAGCAGAGAGTTATCCTAGT+GGG | 0.578356 | 5.4:-11073310 | MS.gene010408:CDS |
| CGAAGTCACAACACTAGACA+TGG | 0.578644 | 5.4:-11073428 | MS.gene010408:CDS |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.4:-11073272 | MS.gene010408:CDS |
| CTCTTGGAATAGATTCAAGA+AGG | 0.590863 | 5.4:+11073183 | None:intergenic |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5.4:+11069866 | None:intergenic |
| CTTCTTGAATCTATTCCAAG+AGG | 0.608051 | 5.4:-11073182 | MS.gene010408:intron |
| ATAAGCCAGCATACCTCAGG+TGG | 0.609961 | 5.4:+11070187 | None:intergenic |
| AAGAAGGATAGATCAGGAGA+AGG | 0.614120 | 5.4:+11073199 | None:intergenic |
| AGAGTCACAAAAGATAACTA+CGG | 0.623664 | 5.4:-11069970 | MS.gene010408:CDS |
| TCTTTCGGTTTAGAGAACAT+AGG | 0.623701 | 5.4:+11069823 | None:intergenic |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.4:-11073278 | MS.gene010408:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.4:+11070237 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.4:+11073296 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.4:-11073294 | MS.gene010408:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.4:+11073482 | None:intergenic |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5.4:+11069830 | None:intergenic |
| CCTTAGTAATGACAATGCAA+GGG | 0.667410 | 5.4:+11070038 | None:intergenic |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5.4:-11073497 | MS.gene010408:CDS |
| GTATCAACTATCTCCACCTG+AGG | 0.688226 | 5.4:-11070200 | MS.gene010408:intron |
| AGAGCAGAGAGTTATCCTAG+TGG | 0.710502 | 5.4:-11073311 | MS.gene010408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAAATAAAATTAATA+AGG | - | chr5.4:11071983-11072002 | MS.gene010408:intron | 0.0% |
| !! | AAAATTAATAAGGTTAAAAT+TGG | - | chr5.4:11071993-11072012 | MS.gene010408:intron | 10.0% |
| !! | ATGTAAATTAAGAAAATTAA+TGG | - | chr5.4:11070409-11070428 | MS.gene010408:intron | 10.0% |
| !!! | ATAAAAAACATTTATCATTT+TGG | + | chr5.4:11071716-11071735 | None:intergenic | 10.0% |
| !!! | TTTTTAAAGTTATAAAAAGT+GGG | - | chr5.4:11071919-11071938 | MS.gene010408:intron | 10.0% |
| !!! | TTTTTTAAAGTTATAAAAAG+TGG | - | chr5.4:11071918-11071937 | MS.gene010408:intron | 10.0% |
| !!! | TTTTTTTATTCTTTTTTGTT+TGG | + | chr5.4:11070348-11070367 | None:intergenic | 10.0% |
| !! | AAAAAAATCCGTATAATAAA+TGG | - | chr5.4:11070361-11070380 | MS.gene010408:intron | 15.0% |
| !! | AAAAAATCCGTATAATAAAT+GGG | - | chr5.4:11070362-11070381 | MS.gene010408:intron | 15.0% |
| !! | AAAAGAACAAAGAAAATATA+TGG | - | chr5.4:11071850-11071869 | MS.gene010408:intron | 15.0% |
| !! | AAAAGTGATACTTAAAATTT+GGG | - | chr5.4:11072783-11072802 | MS.gene010408:intron | 15.0% |
| !! | CCAAATAATAAATATGTATA+TGG | + | chr5.4:11072641-11072660 | None:intergenic | 15.0% |
| !! | CCATATACATATTTATTATT+TGG | - | chr5.4:11072638-11072657 | MS.gene010408:intron | 15.0% |
| !! | CTTATTAAAAATAATGTGTT+TGG | - | chr5.4:11071542-11071561 | MS.gene010408:intron | 15.0% |
| !! | TAAATATAAAATGACATGAA+TGG | - | chr5.4:11071590-11071609 | MS.gene010408:intron | 15.0% |
| !!! | CAAAGAATTTAAAACTTTTT+TGG | + | chr5.4:11073193-11073212 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTTTTTAACTATA+CGG | - | chr5.4:11072351-11072370 | MS.gene010408:intron | 15.0% |
| !! | AAAGCAAGTTAAAAGAAAAA+AGG | - | chr5.4:11071826-11071845 | MS.gene010408:intron | 20.0% |
| !! | AAAGGTAGATATTATAGATA+TGG | + | chr5.4:11070472-11070491 | None:intergenic | 20.0% |
| !! | AAAGTGATACTTAAAATTTG+GGG | - | chr5.4:11072784-11072803 | MS.gene010408:intron | 20.0% |
| !! | AACAGTAATTGAAGAAAATA+CGG | + | chr5.4:11072950-11072969 | None:intergenic | 20.0% |
| !! | ATAATTGATTGTAGAATGTT+TGG | + | chr5.4:11071004-11071023 | None:intergenic | 20.0% |
| !! | ATATGAGAAAGATCAAAATA+AGG | + | chr5.4:11070164-11070183 | None:intergenic | 20.0% |
| !! | ATTATCAATTTGTGAAAGTT+TGG | - | chr5.4:11072814-11072833 | MS.gene010408:intron | 20.0% |
| !! | CAAAAGTGATACTTAAAATT+TGG | - | chr5.4:11072782-11072801 | MS.gene010408:intron | 20.0% |
| !! | CCGTATAGTTAAAAAAAAAA+AGG | + | chr5.4:11072354-11072373 | None:intergenic | 20.0% |
| !! | GAATAGATCTTATTACAAAT+AGG | + | chr5.4:11071086-11071105 | None:intergenic | 20.0% |
| !! | TAAATAGTTATCATCAACTT+TGG | - | chr5.4:11070191-11070210 | MS.gene010408:intron | 20.0% |
| !! | TTATCAATTTGTGAAAGTTT+GGG | - | chr5.4:11072815-11072834 | MS.gene010408:intron | 20.0% |
| !!! | AAAGTAATTTTGACTAAAAG+TGG | - | chr5.4:11070856-11070875 | MS.gene010408:intron | 20.0% |
| !!! | AAGTGTTATTTTGAAAGTTT+TGG | + | chr5.4:11072521-11072540 | None:intergenic | 20.0% |
| !!! | AGTGTTATTTTGAAAGTTTT+GGG | + | chr5.4:11072520-11072539 | None:intergenic | 20.0% |
| !!! | CAAATTTTAAGTATCACTTT+TGG | + | chr5.4:11072784-11072803 | None:intergenic | 20.0% |
| !!! | CTTATACAAACAAGTAATTT+TGG | - | chr5.4:11072686-11072705 | MS.gene010408:intron | 20.0% |
| !!! | GGTGTATTGTAATTTTTTTT+TGG | + | chr5.4:11072860-11072879 | None:intergenic | 20.0% |
| !!! | TATTTAAAATGTGAAGTACT+TGG | - | chr5.4:11072412-11072431 | MS.gene010408:intron | 20.0% |
| !!! | TTTCAATATATACATTGACT+TGG | + | chr5.4:11072597-11072616 | None:intergenic | 20.0% |
| ! | AAAATGCTTATATATGAACC+AGG | - | chr5.4:11073242-11073261 | MS.gene010408:CDS | 25.0% |
| ! | AAGTGATACTTAAAATTTGG+GGG | - | chr5.4:11072785-11072804 | MS.gene010408:intron | 25.0% |
| ! | CAATGTCATAAGAAATTGAA+TGG | - | chr5.4:11071167-11071186 | MS.gene010408:intron | 25.0% |
| ! | TATCAATTTGTGAAAGTTTG+GGG | - | chr5.4:11072816-11072835 | MS.gene010408:intron | 25.0% |
| ! | TCATTTATCTCTATCACAAA+CGG | - | chr5.4:11071142-11071161 | MS.gene010408:intron | 25.0% |
| ! | TGGTTAAGGTTAATACATTA+AGG | - | chr5.4:11071422-11071441 | MS.gene010408:intron | 25.0% |
| ! | TGTTTGTTTGTTTATAGTCA+AGG | - | chr5.4:11071302-11071321 | MS.gene010408:intron | 25.0% |
| ! | TTAAAAATGAAGATACAGAG+TGG | - | chr5.4:11072323-11072342 | MS.gene010408:intron | 25.0% |
| ! | TTACTTGTTTGTATAAGTTG+AGG | + | chr5.4:11072683-11072702 | None:intergenic | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5.4:11070057-11070076 | None:intergenic | 25.0% |
| !! | AAAAGAAACTACCAACTTTT+TGG | + | chr5.4:11071900-11071919 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTT+GGG | + | chr5.4:11073052-11073071 | None:intergenic | 25.0% |
| !! | TACTTGTTTGTATAAGTTGA+GGG | + | chr5.4:11072682-11072701 | None:intergenic | 25.0% |
| !! | TTTAAAATTTAGGCTGTGTT+TGG | + | chr5.4:11072189-11072208 | None:intergenic | 25.0% |
| !!! | GAGGATTCTTTATTTTATGA+TGG | + | chr5.4:11070592-11070611 | None:intergenic | 25.0% |
| !!! | GGTTGCTTTCAATTTTTTAT+AGG | + | chr5.4:11072929-11072948 | None:intergenic | 25.0% |
| !!! | GTGTTATTTTGAAAGTTTTG+GGG | + | chr5.4:11072519-11072538 | None:intergenic | 25.0% |
| AAGAATCCTCCAATCTTAAT+CGG | - | chr5.4:11070602-11070621 | MS.gene010408:intron | 30.0% | |
| AGAGTCACAAAAGATAACTA+CGG | - | chr5.4:11073339-11073358 | MS.gene010408:CDS | 30.0% | |
| AGCATCATTTAACCTAATGT+CGG | + | chr5.4:11072462-11072481 | None:intergenic | 30.0% | |
| ATCAAAATCAATTGTCTCCA+CGG | + | chr5.4:11070804-11070823 | None:intergenic | 30.0% | |
| ATCAATTTGTGAAAGTTTGG+GGG | - | chr5.4:11072817-11072836 | MS.gene010408:intron | 30.0% | |
| ATCCTTGCCCATTTATTATA+CGG | + | chr5.4:11070372-11070391 | None:intergenic | 30.0% | |
| ATTTATCTCTATCACAAACG+GGG | - | chr5.4:11071144-11071163 | MS.gene010408:intron | 30.0% | |
| CATTACATACACTTGAGATA+TGG | + | chr5.4:11071344-11071363 | None:intergenic | 30.0% | |
| CATTTATCTCTATCACAAAC+GGG | - | chr5.4:11071143-11071162 | MS.gene010408:intron | 30.0% | |
| GACCTTAGAAATTCAATCAA+CGG | + | chr5.4:11069969-11069988 | None:intergenic | 30.0% | |
| GGGTAGTTACATATGAATAT+GGG | - | chr5.4:11071939-11071958 | MS.gene010408:intron | 30.0% | |
| TAATACATTAAGGCTCTGTT+TGG | - | chr5.4:11071432-11071451 | MS.gene010408:intron | 30.0% | |
| TAGATGATGTGTTAGTGATA+AGG | - | chr5.4:11070756-11070775 | MS.gene010408:intron | 30.0% | |
| TCATAAGAAATTGAATGGTG+AGG | - | chr5.4:11071172-11071191 | MS.gene010408:intron | 30.0% | |
| TGGGTAGTTACATATGAATA+TGG | - | chr5.4:11071938-11071957 | MS.gene010408:intron | 30.0% | |
| ! | AACCGTTGATTGAATTTCTA+AGG | - | chr5.4:11069964-11069983 | MS.gene010408:CDS | 30.0% |
| ! | ATTTGAGATACGTTCTTCAT+GGG | + | chr5.4:11071250-11071269 | None:intergenic | 30.0% |
| ! | CTTTTACAAACCGACAATTT+TGG | - | chr5.4:11072493-11072512 | MS.gene010408:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+TGG | + | chr5.4:11073053-11073072 | None:intergenic | 30.0% |
| ! | GTTACTTTGTTAAAATCTGC+TGG | - | chr5.4:11069855-11069874 | MS.gene010408:CDS | 30.0% |
| !! | AGCTAGCTTAATTTTTACGA+AGG | + | chr5.4:11072237-11072256 | None:intergenic | 30.0% |
| !! | ATTGTCGGTTTGTAAAAGTA+AGG | + | chr5.4:11072491-11072510 | None:intergenic | 30.0% |
| !! | GTCCTTCACGTTTTAAATTA+CGG | + | chr5.4:11072266-11072285 | None:intergenic | 30.0% |
| !! | TGACTTGGTCAAAATTAAGA+GGG | + | chr5.4:11072582-11072601 | None:intergenic | 30.0% |
| !! | TTGACTTGGTCAAAATTAAG+AGG | + | chr5.4:11072583-11072602 | None:intergenic | 30.0% |
| !! | TTGTCGGTTTGTAAAAGTAA+GGG | + | chr5.4:11072490-11072509 | None:intergenic | 30.0% |
| !!! | ACCTTCATTTTTTTCACTCA+AGG | + | chr5.4:11071058-11071077 | None:intergenic | 30.0% |
| !!! | CCTTCATTTTTTTCACTCAA+GGG | + | chr5.4:11071057-11071076 | None:intergenic | 30.0% |
| AACTTGGTTGCTAAGAATTG+TGG | + | chr5.4:11073089-11073108 | None:intergenic | 35.0% | |
| AAGGATAATCAAGTACCTCT+TGG | + | chr5.4:11070145-11070164 | None:intergenic | 35.0% | |
| AAGTTTAGACTCAAATCGCA+CGG | - | chr5.4:11072883-11072902 | MS.gene010408:intron | 35.0% | |
| ACAATGATGAAACCGACATT+AGG | - | chr5.4:11072447-11072466 | MS.gene010408:intron | 35.0% | |
| AGATATGCACAAAGCTCTTT+CGG | + | chr5.4:11073504-11073523 | None:intergenic | 35.0% | |
| AGATTCAAGAAGGATAGATC+AGG | + | chr5.4:11070119-11070138 | None:intergenic | 35.0% | |
| AGCCCAAATGATAAACCAAA+TGG | - | chr5.4:11073047-11073066 | MS.gene010408:intron | 35.0% | |
| AGTGAATTACTCACTTTCGA+AGG | - | chr5.4:11070538-11070557 | MS.gene010408:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5.4:11073447-11073466 | None:intergenic | 35.0% | |
| ATCCGTATAATAAATGGGCA+AGG | - | chr5.4:11070367-11070386 | MS.gene010408:intron | 35.0% | |
| ATCGGACAACTAGAAATCTT+TGG | - | chr5.4:11070620-11070639 | MS.gene010408:intron | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | chr5.4:11073065-11073084 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | chr5.4:11073062-11073081 | MS.gene010408:intron | 35.0% | |
| CCCTTGAGTGAAAAAAATGA+AGG | - | chr5.4:11071054-11071073 | MS.gene010408:intron | 35.0% | |
| CCTTAGTAATGACAATGCAA+GGG | + | chr5.4:11073274-11073293 | None:intergenic | 35.0% | |
| CGATTTGAGTCTAAACTTAG+GGG | + | chr5.4:11072881-11072900 | None:intergenic | 35.0% | |
| CTCTTGGAATAGATTCAAGA+AGG | + | chr5.4:11070129-11070148 | None:intergenic | 35.0% | |
| CTTCTTGAATCTATTCCAAG+AGG | - | chr5.4:11070127-11070146 | MS.gene010408:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | + | chr5.4:11073075-11073094 | None:intergenic | 35.0% | |
| GACAACTAGAAATCTTTGGA+AGG | - | chr5.4:11070624-11070643 | MS.gene010408:intron | 35.0% | |
| GCGATTTGAGTCTAAACTTA+GGG | + | chr5.4:11072882-11072901 | None:intergenic | 35.0% | |
| GGATGAAAACATGATGTGTT+TGG | + | chr5.4:11072115-11072134 | None:intergenic | 35.0% | |
| GTGAATTACTCACTTTCGAA+GGG | - | chr5.4:11070539-11070558 | MS.gene010408:intron | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5.4:11073446-11073465 | None:intergenic | 35.0% | |
| TCTAGTTGTCCGATTAAGAT+TGG | + | chr5.4:11070614-11070633 | None:intergenic | 35.0% | |
| TCTTTCGGTTTAGAGAACAT+AGG | + | chr5.4:11073489-11073508 | None:intergenic | 35.0% | |
| TGCGATTTGAGTCTAAACTT+AGG | + | chr5.4:11072883-11072902 | None:intergenic | 35.0% | |
| TGCTTCGTCAAAATCAGTTA+GGG | - | chr5.4:11072724-11072743 | MS.gene010408:intron | 35.0% | |
| TTGCTTCGTCAAAATCAGTT+AGG | - | chr5.4:11072723-11072742 | MS.gene010408:intron | 35.0% | |
| TTTGCAAAAGAGGCTAAAGT+TGG | + | chr5.4:11072551-11072570 | None:intergenic | 35.0% | |
| ! | ACAAAGAATTGATTCCAGCT+TGG | - | chr5.4:11073001-11073020 | MS.gene010408:intron | 35.0% |
| ! | CACCGTAATTTAAAACGTGA+AGG | - | chr5.4:11072261-11072280 | MS.gene010408:intron | 35.0% |
| ! | CACTCATGTGATATTTTCGT+TGG | + | chr5.4:11071219-11071238 | None:intergenic | 35.0% |
| ! | GACGAAGCAAACACAATTTT+GGG | + | chr5.4:11072713-11072732 | None:intergenic | 35.0% |
| ! | GATTTGAGATACGTTCTTCA+TGG | + | chr5.4:11071251-11071270 | None:intergenic | 35.0% |
| ! | GGATAACACTTTTGCAAAAG+AGG | + | chr5.4:11072561-11072580 | None:intergenic | 35.0% |
| ! | TACTGTGAAGCTCTTTTTAG+TGG | - | chr5.4:11071402-11071421 | MS.gene010408:intron | 35.0% |
| ! | TCATGTGATATTTTCGTTGG+AGG | + | chr5.4:11071216-11071235 | None:intergenic | 35.0% |
| ! | TGACGAAGCAAACACAATTT+TGG | + | chr5.4:11072714-11072733 | None:intergenic | 35.0% |
| ! | TGGAGATAGTTGATACAACT+TGG | + | chr5.4:11073105-11073124 | None:intergenic | 35.0% |
| !! | AGACATTTCGTGTTGATTCA+TGG | - | chr5.4:11069798-11069817 | MS.gene010408:CDS | 35.0% |
| !! | CTTCACGTTTTAAATTACGG+TGG | + | chr5.4:11072263-11072282 | None:intergenic | 35.0% |
| !! | GAAGCTCTTTTTAGTGGTTA+AGG | - | chr5.4:11071408-11071427 | MS.gene010408:intron | 35.0% |
| !!! | CATTTTTTTCACTCAAGGGT+AGG | + | chr5.4:11071053-11071072 | None:intergenic | 35.0% |
| AAGAAGGATAGATCAGGAGA+AGG | + | chr5.4:11070113-11070132 | None:intergenic | 40.0% | |
| AGTTGTCCGATTAAGATTGG+AGG | + | chr5.4:11070611-11070630 | None:intergenic | 40.0% | |
| ATATGGTAGTAACGTGCAAG+TGG | - | chr5.4:11071867-11071886 | MS.gene010408:intron | 40.0% | |
| CAGCTTGGACACAAAGATTA+CGG | - | chr5.4:11073016-11073035 | MS.gene010408:intron | 40.0% | |
| CCCTTGCATTGTCATTACTA+AGG | - | chr5.4:11073271-11073290 | MS.gene010408:CDS | 40.0% | |
| GCCTTAGTAATGACAATGCA+AGG | + | chr5.4:11073275-11073294 | None:intergenic | 40.0% | |
| GCTCTAACACTTTGTCTTGT+TGG | + | chr5.4:11073392-11073411 | None:intergenic | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | + | chr5.4:11073482-11073501 | None:intergenic | 40.0% | |
| TATGTGACAATTTATCGCCG+TGG | - | chr5.4:11070784-11070803 | MS.gene010408:intron | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | - | chr5.4:11069811-11069830 | MS.gene010408:CDS | 40.0% | |
| TGTAACTCGTGTATCTAGTG+AGG | - | chr5.4:11070237-11070256 | MS.gene010408:CDS | 40.0% | |
| TTGATTCATGGATCTTGCCA+TGG | - | chr5.4:11069810-11069829 | MS.gene010408:CDS | 40.0% | |
| TTGGCACACAATGAACACTT+TGG | + | chr5.4:11073373-11073392 | None:intergenic | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5.4:11070071-11070090 | None:intergenic | 40.0% |
| ! | GAAGCTAGCTTATAGCTTGT+TGG | + | chr5.4:11072157-11072176 | None:intergenic | 40.0% |
| ! | TTTGGAGCTGATAGCTGATA+AGG | - | chr5.4:11071450-11071469 | MS.gene010408:intron | 40.0% |
| !! | CACGTTTTAAATTACGGTGG+TGG | + | chr5.4:11072260-11072279 | None:intergenic | 40.0% |
| !! | GGATTAGCTTATAAGCTCGT+TGG | + | chr5.4:11072136-11072155 | None:intergenic | 40.0% |
| !!! | AGTTTTGGGGCCAAAATTGT+CGG | + | chr5.4:11072506-11072525 | None:intergenic | 40.0% |
| AACATAAGCCAGCATACCTC+AGG | + | chr5.4:11073128-11073147 | None:intergenic | 45.0% | |
| AGAGCAGAGAGTTATCCTAG+TGG | - | chr5.4:11069998-11070017 | MS.gene010408:CDS | 45.0% | |
| AGGATAACTCTCTGCTCTTG+TGG | + | chr5.4:11069996-11070015 | None:intergenic | 45.0% | |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5.4:11070031-11070050 | MS.gene010408:CDS | 45.0% | |
| CGAAGTCACAACACTAGACA+TGG | - | chr5.4:11069881-11069900 | MS.gene010408:CDS | 45.0% | |
| CGTAATCTTTGTGTCCAAGC+TGG | + | chr5.4:11073018-11073037 | None:intergenic | 45.0% | |
| GAGCAGAGAGTTATCCTAGT+GGG | - | chr5.4:11069999-11070018 | MS.gene010408:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5.4:11070037-11070056 | MS.gene010408:CDS | 45.0% | |
| GATTCATGGATCTTGCCATG+GGG | - | chr5.4:11069812-11069831 | MS.gene010408:CDS | 45.0% | |
| GCTATCAGCTATCAGTCATC+AGG | + | chr5.4:11071504-11071523 | None:intergenic | 45.0% | |
| GTAATGACAATGCAAGGGAC+AGG | + | chr5.4:11073269-11073288 | None:intergenic | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | - | chr5.4:11073109-11073128 | MS.gene010408:intron | 45.0% | |
| TGGGCAAGGATCATCTAAAG+TGG | - | chr5.4:11070381-11070400 | MS.gene010408:intron | 45.0% | |
| TGTCATTACTAAGGCCTGCT+AGG | - | chr5.4:11073280-11073299 | MS.gene010408:CDS | 45.0% | |
| TTTACACAAGCGGCTAAAGC+TGG | - | chr5.4:11072754-11072773 | MS.gene010408:intron | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5.4:11070011-11070030 | MS.gene010408:CDS | 45.0% |
| ! | GTGGCTTTGCACCAAAAAGT+TGG | - | chr5.4:11071886-11071905 | MS.gene010408:intron | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5.4:11070015-11070034 | MS.gene010408:CDS | 45.0% |
| !!! | GGGCGTCATTTTTACACAAG+CGG | - | chr5.4:11072744-11072763 | MS.gene010408:intron | 45.0% |
| !! | AATTAAAAAATAATATAGTT+TGG | - | chr5.4:11070277-11070296 | MS.gene010408:CDS | 5.0% |
| !! | AATTATAACAAAAATAATAA+AGG | + | chr5.4:11071109-11071128 | None:intergenic | 5.0% |
| !! | ATCATTAATTAATATATTAA+AGG | + | chr5.4:11070490-11070509 | None:intergenic | 5.0% |
| !! | ATTAAAAAATAATATAGTTT+GGG | - | chr5.4:11070278-11070297 | MS.gene010408:CDS | 5.0% |
| !! | ATTATAACAAAAATAATAAA+GGG | + | chr5.4:11071108-11071127 | None:intergenic | 5.0% |
| !!! | ATAAGTATTATTTAAAATTT+AGG | + | chr5.4:11072199-11072218 | None:intergenic | 5.0% |
| !!! | TATTTTTTATTTAACTAAAA+TGG | - | chr5.4:11071748-11071767 | MS.gene010408:intron | 5.0% |
| ACACTAGACATGGCTGCTTC+TGG | - | chr5.4:11069891-11069910 | MS.gene010408:CDS | 50.0% | |
| ATAAGCCAGCATACCTCAGG+TGG | + | chr5.4:11073125-11073144 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5.4:11070016-11070035 | None:intergenic | 50.0% | |
| CACTAGACATGGCTGCTTCT+GGG | - | chr5.4:11069892-11069911 | MS.gene010408:CDS | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | - | chr5.4:11073117-11073136 | MS.gene010408:intron | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | + | chr5.4:11073297-11073316 | None:intergenic | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5.4:11069920-11069939 | MS.gene010408:CDS | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5.4:11069924-11069943 | None:intergenic | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5.4:11070014-11070033 | MS.gene010408:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5.4:11069920-11069939 | None:intergenic | 50.0% |
| ACAATGCAAGGGACAGGTCC+TGG | + | chr5.4:11073263-11073282 | None:intergenic | 55.0% | |
| ACACAAGCGGCTAAAGCTGG+TGG | - | chr5.4:11072757-11072776 | MS.gene010408:intron | 55.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | - | chr5.4:11069817-11069836 | MS.gene010408:CDS | 55.0% | |
| CACAAGCGGCTAAAGCTGGT+GGG | - | chr5.4:11072758-11072777 | MS.gene010408:intron | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | - | chr5.4:11073288-11073307 | MS.gene010408:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5.4:11069830-11069849 | None:intergenic | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | - | chr5.4:11069830-11069849 | MS.gene010408:CDS | 55.0% |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5.4:11069823-11069842 | MS.gene010408:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11069780 | 11073551 | 11069780 | ID=MS.gene010408 |
| chr5.4 | mRNA | 11069780 | 11073551 | 11069780 | ID=MS.gene010408.t1;Parent=MS.gene010408 |
| chr5.4 | exon | 11073183 | 11073551 | 11073183 | ID=MS.gene010408.t1.exon1;Parent=MS.gene010408.t1 |
| chr5.4 | CDS | 11073183 | 11073551 | 11073183 | ID=cds.MS.gene010408.t1;Parent=MS.gene010408.t1 |
| chr5.4 | exon | 11070201 | 11070335 | 11070201 | ID=MS.gene010408.t1.exon2;Parent=MS.gene010408.t1 |
| chr5.4 | CDS | 11070201 | 11070335 | 11070201 | ID=cds.MS.gene010408.t1;Parent=MS.gene010408.t1 |
| chr5.4 | exon | 11069780 | 11070067 | 11069780 | ID=MS.gene010408.t1.exon3;Parent=MS.gene010408.t1 |
| chr5.4 | CDS | 11069780 | 11070067 | 11069780 | ID=cds.MS.gene010408.t1;Parent=MS.gene010408.t1 |
| Gene Sequence |
| Protein sequence |
