Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047689.t1 | XP_013453511.1 | 96.5 | 256 | 9 | 0 | 1 | 256 | 6 | 261 | 7.30E-140 | 506.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047689.t1 | Q9SE93 | 53.5 | 256 | 115 | 1 | 3 | 254 | 8 | 263 | 3.2e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047689.t1 | A0A072UEL6 | 96.5 | 256 | 9 | 0 | 1 | 256 | 6 | 261 | 5.2e-140 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047689 | MS.gene041151 | PPI |
| MS.gene047689 | MS.gene041144 | PPI |
| MS.gene39709 | MS.gene047689 | PPI |
| MS.gene047689 | MS.gene022655 | PPI |
| MS.gene89919 | MS.gene047689 | PPI |
| MS.gene047689 | MS.gene39713 | PPI |
| MS.gene047689 | MS.gene39388 | PPI |
| MS.gene047689 | MS.gene011884 | PPI |
| MS.gene047689 | MS.gene010408 | PPI |
| MS.gene28543 | MS.gene047689 | PPI |
| MS.gene047689 | MS.gene44962 | PPI |
| MS.gene010409 | MS.gene047689 | PPI |
| MS.gene39389 | MS.gene047689 | PPI |
| MS.gene87350 | MS.gene047689 | PPI |
| MS.gene037828 | MS.gene047689 | PPI |
| MS.gene047685 | MS.gene047689 | PPI |
| MS.gene39712 | MS.gene047689 | PPI |
| MS.gene047684 | MS.gene047689 | PPI |
| MS.gene047689 | MS.gene037826 | PPI |
| MS.gene047689 | MS.gene037829 | PPI |
| MS.gene047689 | MS.gene041145 | PPI |
| MS.gene010412 | MS.gene047689 | PPI |
| MS.gene022654 | MS.gene047689 | PPI |
| MS.gene047689 | MS.gene047686 | PPI |
| MS.gene56982 | MS.gene047689 | PPI |
| MS.gene39710 | MS.gene047689 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047689.t1 | MTR_5g018365 | 96.484 | 256 | 9 | 0 | 1 | 256 | 6 | 261 | 0.0 | 512 |
| MS.gene047689.t1 | MTR_5g018350 | 73.828 | 256 | 67 | 0 | 1 | 256 | 1 | 256 | 2.47e-137 | 387 |
| MS.gene047689.t1 | MTR_8g079120 | 63.095 | 252 | 93 | 0 | 5 | 256 | 9 | 260 | 1.58e-117 | 337 |
| MS.gene047689.t1 | MTR_8g079120 | 61.875 | 160 | 61 | 0 | 5 | 164 | 51 | 210 | 4.34e-70 | 215 |
| MS.gene047689.t1 | MTR_8g007675 | 42.023 | 257 | 140 | 5 | 7 | 256 | 32 | 286 | 3.27e-65 | 205 |
| MS.gene047689.t1 | MTR_3g464040 | 41.245 | 257 | 141 | 4 | 6 | 256 | 18 | 270 | 4.04e-64 | 201 |
| MS.gene047689.t1 | MTR_5g018320 | 42.023 | 257 | 140 | 3 | 7 | 256 | 5 | 259 | 1.20e-61 | 195 |
| MS.gene047689.t1 | MTR_5g018300 | 39.768 | 259 | 147 | 3 | 5 | 256 | 6 | 262 | 5.91e-61 | 193 |
| MS.gene047689.t1 | MTR_8g008505 | 39.453 | 256 | 149 | 4 | 6 | 256 | 27 | 281 | 2.44e-57 | 184 |
| MS.gene047689.t1 | MTR_8g007670 | 39.245 | 265 | 149 | 6 | 1 | 256 | 1 | 262 | 1.66e-56 | 182 |
| MS.gene047689.t1 | MTR_8g008660 | 39.453 | 256 | 147 | 4 | 6 | 256 | 26 | 278 | 8.62e-56 | 181 |
| MS.gene047689.t1 | MTR_8g008500 | 40.000 | 260 | 146 | 6 | 6 | 256 | 26 | 284 | 2.30e-55 | 179 |
| MS.gene047689.t1 | MTR_5g018280 | 38.610 | 259 | 149 | 4 | 5 | 256 | 6 | 261 | 2.45e-55 | 179 |
| MS.gene047689.t1 | MTR_8g007670 | 37.692 | 260 | 116 | 6 | 1 | 256 | 1 | 218 | 1.58e-49 | 162 |
| MS.gene047689.t1 | MTR_7g015220 | 34.783 | 253 | 154 | 3 | 7 | 253 | 124 | 371 | 2.04e-37 | 135 |
| MS.gene047689.t1 | MTR_3g005410 | 34.962 | 266 | 149 | 5 | 1 | 253 | 88 | 342 | 1.21e-36 | 132 |
| MS.gene047689.t1 | MTR_5g068100 | 32.075 | 265 | 157 | 6 | 5 | 257 | 28 | 281 | 2.78e-34 | 125 |
| MS.gene047689.t1 | MTR_3g093730 | 31.837 | 245 | 155 | 5 | 4 | 242 | 33 | 271 | 3.34e-33 | 122 |
| MS.gene047689.t1 | MTR_3g093730 | 47.115 | 104 | 55 | 0 | 4 | 107 | 33 | 136 | 2.63e-31 | 116 |
| MS.gene047689.t1 | MTR_1g034410 | 54.167 | 72 | 27 | 1 | 28 | 93 | 39 | 110 | 6.78e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047689.t1 | AT2G23620 | 52.692 | 260 | 115 | 4 | 3 | 256 | 5 | 262 | 8.59e-92 | 272 |
| MS.gene047689.t1 | AT2G23590 | 49.603 | 252 | 122 | 1 | 5 | 256 | 25 | 271 | 9.60e-86 | 257 |
| MS.gene047689.t1 | AT5G10300 | 51.938 | 258 | 118 | 2 | 3 | 256 | 2 | 257 | 9.73e-86 | 256 |
| MS.gene047689.t1 | AT2G23600 | 48.062 | 258 | 130 | 3 | 3 | 256 | 5 | 262 | 3.25e-84 | 253 |
| MS.gene047689.t1 | AT2G23600 | 48.062 | 258 | 130 | 3 | 3 | 256 | 20 | 277 | 4.15e-84 | 253 |
| MS.gene047689.t1 | AT2G23610 | 46.718 | 259 | 134 | 2 | 2 | 256 | 4 | 262 | 2.26e-82 | 248 |
| MS.gene047689.t1 | AT2G23580 | 47.876 | 259 | 130 | 3 | 3 | 256 | 4 | 262 | 2.87e-82 | 248 |
| MS.gene047689.t1 | AT2G23550 | 48.462 | 260 | 129 | 3 | 2 | 256 | 10 | 269 | 8.77e-80 | 241 |
| MS.gene047689.t1 | AT2G23550 | 48.462 | 260 | 129 | 3 | 2 | 256 | 3 | 262 | 9.62e-80 | 241 |
| MS.gene047689.t1 | AT2G23560 | 43.750 | 256 | 142 | 2 | 3 | 256 | 4 | 259 | 3.06e-75 | 229 |
| MS.gene047689.t1 | AT4G37150 | 44.922 | 256 | 134 | 3 | 6 | 256 | 2 | 255 | 6.03e-75 | 229 |
| MS.gene047689.t1 | AT2G23610 | 43.922 | 255 | 100 | 2 | 3 | 256 | 5 | 217 | 2.45e-71 | 218 |
| MS.gene047689.t1 | AT3G50440 | 42.688 | 253 | 141 | 1 | 8 | 256 | 22 | 274 | 3.75e-67 | 209 |
| MS.gene047689.t1 | AT2G23550 | 42.471 | 259 | 117 | 3 | 2 | 256 | 3 | 233 | 4.87e-62 | 195 |
| MS.gene047689.t1 | AT2G23600 | 48.193 | 166 | 82 | 3 | 3 | 164 | 20 | 185 | 2.40e-54 | 174 |
| MS.gene047689.t1 | AT5G10300 | 52.976 | 168 | 73 | 2 | 3 | 166 | 2 | 167 | 1.61e-51 | 167 |
| MS.gene047689.t1 | AT2G23580 | 46.486 | 185 | 91 | 4 | 2 | 181 | 3 | 184 | 9.30e-50 | 162 |
| MS.gene047689.t1 | AT2G23570 | 46.893 | 177 | 90 | 1 | 84 | 256 | 2 | 178 | 3.05e-49 | 160 |
| MS.gene047689.t1 | AT2G23550 | 45.128 | 195 | 94 | 4 | 2 | 191 | 10 | 196 | 4.07e-48 | 158 |
| MS.gene047689.t1 | AT4G37140 | 55.556 | 108 | 48 | 0 | 5 | 112 | 1 | 108 | 2.32e-40 | 136 |
| MS.gene047689.t1 | AT4G09900 | 37.066 | 259 | 147 | 5 | 4 | 253 | 95 | 346 | 3.67e-40 | 142 |
| MS.gene047689.t1 | AT1G33990 | 35.798 | 257 | 149 | 5 | 6 | 253 | 96 | 345 | 1.24e-38 | 138 |
| MS.gene047689.t1 | AT3G29770 | 37.052 | 251 | 153 | 2 | 6 | 253 | 137 | 385 | 1.44e-38 | 139 |
| MS.gene047689.t1 | AT1G69240 | 33.205 | 259 | 165 | 5 | 6 | 259 | 186 | 441 | 4.15e-36 | 133 |
| MS.gene047689.t1 | AT1G26360 | 33.333 | 255 | 157 | 5 | 6 | 253 | 188 | 436 | 6.54e-35 | 130 |
| MS.gene047689.t1 | AT4G37140 | 57.143 | 91 | 39 | 0 | 6 | 96 | 2 | 92 | 1.62e-33 | 117 |
| MS.gene047689.t1 | AT5G58310 | 30.741 | 270 | 162 | 6 | 5 | 258 | 3 | 263 | 8.41e-32 | 118 |
| MS.gene047689.t1 | AT3G10870 | 45.283 | 106 | 58 | 0 | 2 | 107 | 15 | 120 | 9.60e-31 | 115 |
| MS.gene047689.t1 | AT4G16690 | 31.225 | 253 | 157 | 6 | 7 | 251 | 12 | 255 | 1.59e-28 | 109 |
| MS.gene047689.t1 | AT3G29770 | 50.000 | 74 | 37 | 0 | 6 | 79 | 137 | 210 | 1.62e-15 | 74.7 |
Find 45 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCATCAATCCCAGCATTT+TGG | 0.143115 | 5.3:-10397527 | None:intergenic |
| AATTTATCCAAGGAGGGATA+TGG | 0.283211 | 5.3:+10397432 | MS.gene047689:CDS |
| GATGGTTTGTGTTGAGTATC+AGG | 0.310434 | 5.3:-10395813 | None:intergenic |
| ATTGAGAGATACCCGGTTAC+TGG | 0.326715 | 5.3:+10396882 | MS.gene047689:CDS |
| ACAACATACTAGTTAAATTT+CGG | 0.332164 | 5.3:-10397642 | None:intergenic |
| GTTCTTGTTGGACATAGCTT+TGG | 0.363914 | 5.3:+10395714 | MS.gene047689:CDS |
| GTGTCTAACCATCCAGTAAC+CGG | 0.382878 | 5.3:-10396894 | None:intergenic |
| GATGCGGTGAAAGTGATTAA+TGG | 0.393295 | 5.3:+10397543 | MS.gene047689:CDS |
| GACTTTGCAGGATTTGGAAT+TGG | 0.421655 | 5.3:+10397353 | MS.gene047689:intron |
| CTTGTTGGACATAGCTTTGG+AGG | 0.435184 | 5.3:+10395717 | MS.gene047689:CDS |
| ACCATCATATGTTCTAGAAC+AGG | 0.465534 | 5.3:+10395830 | MS.gene047689:CDS |
| GATTAATGGAGCAGATCATA+TGG | 0.479402 | 5.3:+10397557 | MS.gene047689:CDS |
| AACAAAATGCTGTTGTTACC+TGG | 0.480280 | 5.3:+10396936 | MS.gene047689:CDS |
| CTAGTACATGGTGTTAGCGT+TGG | 0.485280 | 5.3:+10395513 | MS.gene047689:CDS |
| ATGGTGTTAGCGTTGGAGCT+TGG | 0.496712 | 5.3:+10395520 | MS.gene047689:CDS |
| ATTTATCCAAGGAGGGATAT+GGG | 0.510344 | 5.3:+10397433 | MS.gene047689:CDS |
| ACCTGTTCTAGAACATATGA+TGG | 0.511075 | 5.3:-10395831 | None:intergenic |
| CTTTCAACTCTGCTCCATTG+AGG | 0.515282 | 5.3:+10396983 | MS.gene047689:CDS |
| AGAGATAAACAAAGTTCTTG+AGG | 0.516394 | 5.3:-10397594 | None:intergenic |
| CAATGGATGATCCAAAATGC+TGG | 0.517637 | 5.3:+10397516 | MS.gene047689:CDS |
| TTAGCGTTGGAGCTTGGAGT+TGG | 0.518739 | 5.3:+10395526 | MS.gene047689:CDS |
| TGATGACTTGGCAATTCCAC+TGG | 0.525862 | 5.3:+10397485 | MS.gene047689:CDS |
| AACCGACCCATATCCCTCCT+TGG | 0.527820 | 5.3:-10397439 | None:intergenic |
| GGCACAATTAAGTACCTCAA+TGG | 0.530565 | 5.3:-10396997 | None:intergenic |
| TATTGTTGCAAATGATGACT+TGG | 0.549585 | 5.3:+10397473 | MS.gene047689:CDS |
| AATGGATGATCCAAAATGCT+GGG | 0.553255 | 5.3:+10397517 | MS.gene047689:CDS |
| GTAGACAAGAACTTTGAGCC+AGG | 0.559075 | 5.3:-10396954 | None:intergenic |
| GCGAAGAATTTATCCAAGGA+GGG | 0.565282 | 5.3:+10397426 | MS.gene047689:CDS |
| TATCAGGAATAAAAGCTGCT+AGG | 0.583140 | 5.3:-10395797 | None:intergenic |
| ATCCAAGGAGGGATATGGGT+CGG | 0.592535 | 5.3:+10397437 | MS.gene047689:CDS |
| AGAGATACCCGGTTACTGGA+TGG | 0.592966 | 5.3:+10396886 | MS.gene047689:CDS |
| AATGAGTATAGCTCTTGCAA+TGG | 0.600234 | 5.3:+10395740 | MS.gene047689:CDS |
| GAGGCTAAGAACTCTAACAA+AGG | 0.608414 | 5.3:-10395669 | None:intergenic |
| ACACTTGACCTTGCAGCTAG+TGG | 0.615932 | 5.3:+10395594 | MS.gene047689:CDS |
| TGACCTACAGATTCTAACTG+TGG | 0.617711 | 5.3:-10395561 | None:intergenic |
| TGTCTAACCATCCAGTAACC+GGG | 0.625170 | 5.3:-10396893 | None:intergenic |
| ATCCATTGTTCATACTCCAG+TGG | 0.633048 | 5.3:-10397501 | None:intergenic |
| AGCGAAGAATTTATCCAAGG+AGG | 0.642147 | 5.3:+10397425 | MS.gene047689:CDS |
| TGAAGCGAAGAATTTATCCA+AGG | 0.646478 | 5.3:+10397422 | MS.gene047689:CDS |
| TTCCACTGGAGTATGAACAA+TGG | 0.648915 | 5.3:+10397499 | MS.gene047689:CDS |
| TGTTGATGCCACTAGCTGCA+AGG | 0.665739 | 5.3:-10395602 | None:intergenic |
| AAACCACAGTTAGAATCTGT+AGG | 0.674566 | 5.3:+10395558 | MS.gene047689:CDS |
| ATAGTATATTGAGAGATACC+CGG | 0.707415 | 5.3:+10396875 | MS.gene047689:intron |
| CCAAAATGCTGGGATTGATG+CGG | 0.708924 | 5.3:+10397527 | MS.gene047689:CDS |
| TTTGCAACAATACAAGCACG+TGG | 0.741755 | 5.3:-10397462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATCTAATTTATCA+AGG | - | chr5.3:10396794-10396813 | None:intergenic | 10.0% |
| !!! | AATATTTATTAGTTTAGTTA+TGG | + | chr5.3:10396357-10396376 | MS.gene047689:intron | 10.0% |
| !!! | ATATTTATTAGTTTAGTTAT+GGG | + | chr5.3:10396358-10396377 | MS.gene047689:intron | 10.0% |
| !!! | TTTTTTTATTGTTTATATTC+TGG | + | chr5.3:10397244-10397263 | MS.gene047689:intron | 10.0% |
| !! | ATATAGTGATTATAACTAAA+GGG | - | chr5.3:10396669-10396688 | None:intergenic | 15.0% |
| !! | TATATAGTGATTATAACTAA+AGG | - | chr5.3:10396670-10396689 | None:intergenic | 15.0% |
| !!! | AATATTGTTAATTTTCTTAG+TGG | + | chr5.3:10395938-10395957 | MS.gene047689:intron | 15.0% |
| !! | TATAGTGATTATAACTAAAG+GGG | - | chr5.3:10396668-10396687 | None:intergenic | 20.0% |
| !!! | AATTGGTGAAGATTTTAATA+AGG | + | chr5.3:10397370-10397389 | MS.gene047689:CDS | 20.0% |
| !!! | ACACCTTCTAAAAAAATAAA+CGG | - | chr5.3:10396546-10396565 | None:intergenic | 20.0% |
| !!! | TCACTAAAGTCTAAAATATA+TGG | + | chr5.3:10397089-10397108 | MS.gene047689:intron | 20.0% |
| !!! | TGATGATATTTGTTTTAAGT+TGG | + | chr5.3:10396332-10396351 | MS.gene047689:intron | 20.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | - | chr5.3:10396438-10396457 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | - | chr5.3:10396585-10396604 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | + | chr5.3:10396628-10396647 | MS.gene047689:intron | 25.0% |
| ! | CCAAAAATCATATATTGTGA+CGG | + | chr5.3:10397318-10397337 | MS.gene047689:intron | 25.0% |
| ! | TTATCCTAGTTTACATTTGA+TGG | - | chr5.3:10396011-10396030 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATGTAAACT+AGG | + | chr5.3:10396004-10396023 | MS.gene047689:intron | 25.0% |
| ! | TTTCCTGAAAAAATTGAAGT+TGG | + | chr5.3:10395768-10395787 | MS.gene047689:CDS | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5.3:10396480-10396499 | MS.gene047689:intron | 25.0% |
| !! | CACCTTCTAAAAAAATAAAC+GGG | - | chr5.3:10396545-10396564 | None:intergenic | 25.0% |
| !! | CGTCACAATATATGATTTTT+GGG | - | chr5.3:10397320-10397339 | None:intergenic | 25.0% |
| !! | TTTTAGCAATATTCACCTTA+AGG | + | chr5.3:10396567-10396586 | MS.gene047689:intron | 25.0% |
| !!! | ATATTTTAGACTTTAGTGAC+AGG | - | chr5.3:10397088-10397107 | None:intergenic | 25.0% |
| !!! | ATTCCAACTTCAATTTTTTC+AGG | - | chr5.3:10395774-10395793 | None:intergenic | 25.0% |
| !!! | TATTTTAGACTTTAGTGACA+GGG | - | chr5.3:10397087-10397106 | None:intergenic | 25.0% |
| AAAAAAATACGTCAACAGCA+GGG | + | chr5.3:10396097-10396116 | MS.gene047689:intron | 30.0% | |
| AATGAAAAAGTGGTTCTTGT+TGG | + | chr5.3:10395702-10395721 | MS.gene047689:CDS | 30.0% | |
| AATTACGCGATTAGTAAAAC+TGG | + | chr5.3:10397113-10397132 | MS.gene047689:intron | 30.0% | |
| ACTTGATCCAAATGAAAAAG+TGG | + | chr5.3:10395692-10395711 | MS.gene047689:CDS | 30.0% | |
| AGAGATAAACAAAGTTCTTG+AGG | - | chr5.3:10397597-10397616 | None:intergenic | 30.0% | |
| ATAGTATATTGAGAGATACC+CGG | + | chr5.3:10396875-10396894 | MS.gene047689:intron | 30.0% | |
| CACACCTTAATAAAAACTAG+TGG | + | chr5.3:10396627-10396646 | MS.gene047689:intron | 30.0% | |
| GTAAAAACTGCAAAGATAGA+TGG | - | chr5.3:10397021-10397040 | None:intergenic | 30.0% | |
| TAAAAAAATACGTCAACAGC+AGG | + | chr5.3:10396096-10396115 | MS.gene047689:intron | 30.0% | |
| TATTGTTGCAAATGATGACT+TGG | + | chr5.3:10397473-10397492 | MS.gene047689:CDS | 30.0% | |
| ! | AAGCATTTTGTTCTAGTACA+TGG | + | chr5.3:10395501-10395520 | MS.gene047689:CDS | 30.0% |
| ! | ACTTGGATCATTTTGTGATA+TGG | + | chr5.3:10396852-10396871 | MS.gene047689:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr5.3:10396479-10396498 | MS.gene047689:intron | 30.0% |
| ! | CCGTCACAATATATGATTTT+TGG | - | chr5.3:10397321-10397340 | None:intergenic | 30.0% |
| ! | GAACAAAATGCTTCTGTTTT+TGG | - | chr5.3:10395494-10395513 | None:intergenic | 30.0% |
| ! | TTAGACACTGAGTTTTCATT+TGG | + | chr5.3:10396909-10396928 | MS.gene047689:CDS | 30.0% |
| ! | TTTTTCATTTGGATCAAGTG+AGG | - | chr5.3:10395691-10395710 | None:intergenic | 30.0% |
| !! | GTGAAGATTTTAATAAGGAC+AGG | + | chr5.3:10397375-10397394 | MS.gene047689:CDS | 30.0% |
| !!! | ACAAGAACCACTTTTTCATT+TGG | - | chr5.3:10395702-10395721 | None:intergenic | 30.0% |
| !!! | ACACCCACTAGTTTTTATTA+AGG | - | chr5.3:10396634-10396653 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5.3:10396486-10396505 | None:intergenic | 30.0% |
| !!! | CACCCGTTTATTTTTTTAGA+AGG | + | chr5.3:10396540-10396559 | MS.gene047689:intron | 30.0% |
| AAACCACAGTTAGAATCTGT+AGG | + | chr5.3:10395558-10395577 | MS.gene047689:CDS | 35.0% | |
| AACAAAATGCTGTTGTTACC+TGG | + | chr5.3:10396936-10396955 | MS.gene047689:CDS | 35.0% | |
| AATGAGTATAGCTCTTGCAA+TGG | + | chr5.3:10395740-10395759 | MS.gene047689:CDS | 35.0% | |
| AATGGATGATCCAAAATGCT+GGG | + | chr5.3:10397517-10397536 | MS.gene047689:CDS | 35.0% | |
| AATTTATCCAAGGAGGGATA+TGG | + | chr5.3:10397432-10397451 | MS.gene047689:CDS | 35.0% | |
| ACAGGGTCTTACATATTTAG+AGG | - | chr5.3:10397070-10397089 | None:intergenic | 35.0% | |
| ACTCTCACATAAAAACCAGT+GGG | - | chr5.3:10396399-10396418 | None:intergenic | 35.0% | |
| AGACAGACTTGAAATCTGTT+GGG | - | chr5.3:10396288-10396307 | None:intergenic | 35.0% | |
| ATCACAAAATGATCCAAGTC+AGG | - | chr5.3:10396851-10396870 | None:intergenic | 35.0% | |
| ATTTATCCAAGGAGGGATAT+GGG | + | chr5.3:10397433-10397452 | MS.gene047689:CDS | 35.0% | |
| GATTAATGGAGCAGATCATA+TGG | + | chr5.3:10397557-10397576 | MS.gene047689:CDS | 35.0% | |
| TATCAGGAATAAAAGCTGCT+AGG | - | chr5.3:10395800-10395819 | None:intergenic | 35.0% | |
| TGAAGCGAAGAATTTATCCA+AGG | + | chr5.3:10397422-10397441 | MS.gene047689:CDS | 35.0% | |
| TGTATGTTAGCAACTCCTAT+AGG | - | chr5.3:10396522-10396541 | None:intergenic | 35.0% | |
| TTTATTTACCTGACCTGACT+TGG | + | chr5.3:10396835-10396854 | MS.gene047689:intron | 35.0% | |
| ! | TATAACTAAAGGGGTTTGCT+AGG | - | chr5.3:10396659-10396678 | None:intergenic | 35.0% |
| ! | TTTTAGCAAGCTACACCTTA+AGG | + | chr5.3:10396420-10396439 | MS.gene047689:intron | 35.0% |
| !! | ACCATCATATGTTCTAGAAC+AGG | + | chr5.3:10395830-10395849 | MS.gene047689:CDS | 35.0% |
| !! | ACCTGTTCTAGAACATATGA+TGG | - | chr5.3:10395834-10395853 | None:intergenic | 35.0% |
| AAAATGATCCAAGTCAGGTC+AGG | - | chr5.3:10396846-10396865 | None:intergenic | 40.0% | |
| AAATCCTGCAAAGTCCACAA+TGG | - | chr5.3:10397348-10397367 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | - | chr5.3:10396511-10396530 | None:intergenic | 40.0% | |
| AATCCTGCAAAGTCCACAAT+GGG | - | chr5.3:10397347-10397366 | None:intergenic | 40.0% | |
| AGCGAAGAATTTATCCAAGG+AGG | + | chr5.3:10397425-10397444 | MS.gene047689:CDS | 40.0% | |
| ATCCATTGTTCATACTCCAG+TGG | - | chr5.3:10397504-10397523 | None:intergenic | 40.0% | |
| ATTGTGGACTTTGCAGGATT+TGG | + | chr5.3:10397347-10397366 | MS.gene047689:intron | 40.0% | |
| CAATGGATGATCCAAAATGC+TGG | + | chr5.3:10397516-10397535 | MS.gene047689:CDS | 40.0% | |
| CACTCTCACATAAAAACCAG+TGG | - | chr5.3:10396400-10396419 | None:intergenic | 40.0% | |
| GAGACAGACTTGAAATCTGT+TGG | - | chr5.3:10396289-10396308 | None:intergenic | 40.0% | |
| GAGGCTAAGAACTCTAACAA+AGG | - | chr5.3:10395672-10395691 | None:intergenic | 40.0% | |
| GATGCGGTGAAAGTGATTAA+TGG | + | chr5.3:10397543-10397562 | MS.gene047689:CDS | 40.0% | |
| GCGAAGAATTTATCCAAGGA+GGG | + | chr5.3:10397426-10397445 | MS.gene047689:CDS | 40.0% | |
| GGCACAATTAAGTACCTCAA+TGG | - | chr5.3:10397000-10397019 | None:intergenic | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | + | chr5.3:10396504-10396523 | MS.gene047689:intron | 40.0% | |
| GTTCTTGTTGGACATAGCTT+TGG | + | chr5.3:10395714-10395733 | MS.gene047689:CDS | 40.0% | |
| TCAATATGTCCGAGTGGTTA+AGG | - | chr5.3:10396311-10396330 | None:intergenic | 40.0% | |
| TGACCTACAGATTCTAACTG+TGG | - | chr5.3:10395564-10395583 | None:intergenic | 40.0% | |
| TTCCACTGGAGTATGAACAA+TGG | + | chr5.3:10397499-10397518 | MS.gene047689:CDS | 40.0% | |
| TTTGCAACAATACAAGCACG+TGG | - | chr5.3:10397465-10397484 | None:intergenic | 40.0% | |
| ! | GACACTGAGTTTTCATTTGG+TGG | + | chr5.3:10396912-10396931 | MS.gene047689:CDS | 40.0% |
| ! | GACTTTGCAGGATTTGGAAT+TGG | + | chr5.3:10397353-10397372 | MS.gene047689:intron | 40.0% |
| ! | GATGGTTTGTGTTGAGTATC+AGG | - | chr5.3:10395816-10395835 | None:intergenic | 40.0% |
| !!! | GACAGGATCACTTTTTCTTG+AGG | + | chr5.3:10397392-10397411 | MS.gene047689:CDS | 40.0% |
| AGTCTGTCTCCTTAACCACT+CGG | + | chr5.3:10396299-10396318 | MS.gene047689:intron | 45.0% | |
| ATCCTGCAAAGTCCACAATG+GGG | - | chr5.3:10397346-10397365 | None:intergenic | 45.0% | |
| ATTGAGAGATACCCGGTTAC+TGG | + | chr5.3:10396882-10396901 | MS.gene047689:CDS | 45.0% | |
| CATCAGTCAATATGTCCGAG+TGG | - | chr5.3:10396317-10396336 | None:intergenic | 45.0% | |
| CCAAAATGCTGGGATTGATG+CGG | + | chr5.3:10397527-10397546 | MS.gene047689:CDS | 45.0% | |
| CTTTCAACTCTGCTCCATTG+AGG | + | chr5.3:10396983-10397002 | MS.gene047689:CDS | 45.0% | |
| GTAGACAAGAACTTTGAGCC+AGG | - | chr5.3:10396957-10396976 | None:intergenic | 45.0% | |
| GTGTCTAACCATCCAGTAAC+CGG | - | chr5.3:10396897-10396916 | None:intergenic | 45.0% | |
| TGTCTAACCATCCAGTAACC+GGG | - | chr5.3:10396896-10396915 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGAACACACCCAC+TGG | + | chr5.3:10396381-10396400 | MS.gene047689:intron | 45.0% |
| ! | CTAGTACATGGTGTTAGCGT+TGG | + | chr5.3:10395513-10395532 | MS.gene047689:CDS | 45.0% |
| ! | TGATGACTTGGCAATTCCAC+TGG | + | chr5.3:10397485-10397504 | MS.gene047689:CDS | 45.0% |
| !! | CTTGTTGGACATAGCTTTGG+AGG | + | chr5.3:10395717-10395736 | MS.gene047689:CDS | 45.0% |
| ACACTTGACCTTGCAGCTAG+TGG | + | chr5.3:10395594-10395613 | MS.gene047689:CDS | 50.0% | |
| AGAGATACCCGGTTACTGGA+TGG | + | chr5.3:10396886-10396905 | MS.gene047689:CDS | 50.0% | |
| ATCCAAGGAGGGATATGGGT+CGG | + | chr5.3:10397437-10397456 | MS.gene047689:CDS | 50.0% | |
| TGTTGATGCCACTAGCTGCA+AGG | - | chr5.3:10395605-10395624 | None:intergenic | 50.0% | |
| ! | ATGGTGTTAGCGTTGGAGCT+TGG | + | chr5.3:10395520-10395539 | MS.gene047689:CDS | 50.0% |
| ! | CCGCATCAATCCCAGCATTT+TGG | - | chr5.3:10397530-10397549 | None:intergenic | 50.0% |
| ! | TTAGCGTTGGAGCTTGGAGT+TGG | + | chr5.3:10395526-10395545 | MS.gene047689:CDS | 50.0% |
| AACCGACCCATATCCCTCCT+TGG | - | chr5.3:10397442-10397461 | None:intergenic | 55.0% | |
| ATTGTGACGGTGCCCCATTG+TGG | + | chr5.3:10397331-10397350 | MS.gene047689:intron | 55.0% | |
| TGCCCCATTGTGGACTTTGC+AGG | + | chr5.3:10397341-10397360 | MS.gene047689:intron | 55.0% | |
| ACATTTCGCTTCGCCCGCGC+AGG | - | chr5.3:10396129-10396148 | None:intergenic | 65.0% | |
| AGCAGGGTTCGAACCTGCGC+GGG | + | chr5.3:10396113-10396132 | MS.gene047689:intron | 65.0% | |
| CAGCAGGGTTCGAACCTGCG+CGG | + | chr5.3:10396112-10396131 | MS.gene047689:intron | 65.0% | |
| CTGTTGGGCTTCGCCCGCGC+AGG | - | chr5.3:10396273-10396292 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10395486 | 10397656 | 10395486 | ID=MS.gene047689 |
| chr5.3 | mRNA | 10395486 | 10397656 | 10395486 | ID=MS.gene047689.t1;Parent=MS.gene047689 |
| chr5.3 | exon | 10395486 | 10395851 | 10395486 | ID=MS.gene047689.t1.exon1;Parent=MS.gene047689.t1 |
| chr5.3 | CDS | 10395486 | 10395851 | 10395486 | ID=cds.MS.gene047689.t1;Parent=MS.gene047689.t1 |
| chr5.3 | exon | 10396879 | 10397004 | 10396879 | ID=MS.gene047689.t1.exon2;Parent=MS.gene047689.t1 |
| chr5.3 | CDS | 10396879 | 10397004 | 10396879 | ID=cds.MS.gene047689.t1;Parent=MS.gene047689.t1 |
| chr5.3 | exon | 10397363 | 10397656 | 10397363 | ID=MS.gene047689.t1.exon3;Parent=MS.gene047689.t1 |
| chr5.3 | CDS | 10397363 | 10397656 | 10397363 | ID=cds.MS.gene047689.t1;Parent=MS.gene047689.t1 |
| Gene Sequence |
| Protein sequence |
