Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010412.t1 | XP_013453511.1 | 96.2 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 7.90E-142 | 513.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010412.t1 | Q9SE93 | 53.5 | 256 | 115 | 1 | 8 | 259 | 8 | 263 | 2.5e-80 | 300.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010412.t1 | A0A072UEL6 | 96.2 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 5.7e-142 | 513.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39389 | MS.gene010412 | PPI |
| MS.gene87350 | MS.gene010412 | PPI |
| MS.gene022654 | MS.gene010412 | PPI |
| MS.gene39712 | MS.gene010412 | PPI |
| MS.gene010412 | MS.gene047686 | PPI |
| MS.gene010412 | MS.gene037829 | PPI |
| MS.gene010412 | MS.gene89919 | PPI |
| MS.gene010412 | MS.gene041151 | PPI |
| MS.gene010412 | MS.gene041144 | PPI |
| MS.gene010412 | MS.gene39713 | PPI |
| MS.gene56982 | MS.gene010412 | PPI |
| MS.gene39710 | MS.gene010412 | PPI |
| MS.gene28543 | MS.gene010412 | PPI |
| MS.gene010412 | MS.gene39709 | PPI |
| MS.gene010412 | MS.gene022655 | PPI |
| MS.gene010409 | MS.gene010412 | PPI |
| MS.gene010412 | MS.gene39388 | PPI |
| MS.gene010412 | MS.gene011884 | PPI |
| MS.gene010412 | MS.gene047689 | PPI |
| MS.gene010412 | MS.gene010408 | PPI |
| MS.gene037828 | MS.gene010412 | PPI |
| MS.gene010412 | MS.gene44962 | PPI |
| MS.gene047685 | MS.gene010412 | PPI |
| MS.gene047684 | MS.gene010412 | PPI |
| MS.gene010412 | MS.gene037826 | PPI |
| MS.gene010412 | MS.gene041145 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010412.t1 | MTR_5g018365 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 519 |
| MS.gene010412.t1 | MTR_5g018350 | 73.438 | 256 | 68 | 0 | 6 | 261 | 1 | 256 | 1.27e-136 | 385 |
| MS.gene010412.t1 | MTR_8g079120 | 63.492 | 252 | 92 | 0 | 10 | 261 | 9 | 260 | 1.56e-118 | 340 |
| MS.gene010412.t1 | MTR_8g079120 | 62.500 | 160 | 60 | 0 | 10 | 169 | 51 | 210 | 3.66e-71 | 218 |
| MS.gene010412.t1 | MTR_8g007675 | 42.023 | 257 | 140 | 5 | 12 | 261 | 32 | 286 | 2.31e-65 | 205 |
| MS.gene010412.t1 | MTR_3g464040 | 41.245 | 257 | 141 | 4 | 11 | 261 | 18 | 270 | 3.27e-64 | 202 |
| MS.gene010412.t1 | MTR_5g018320 | 42.023 | 257 | 140 | 3 | 12 | 261 | 5 | 259 | 9.50e-62 | 195 |
| MS.gene010412.t1 | MTR_5g018300 | 39.768 | 259 | 147 | 3 | 10 | 261 | 6 | 262 | 4.16e-61 | 194 |
| MS.gene010412.t1 | MTR_8g008505 | 39.844 | 256 | 148 | 4 | 11 | 261 | 27 | 281 | 2.98e-58 | 187 |
| MS.gene010412.t1 | MTR_8g008660 | 39.844 | 256 | 146 | 4 | 11 | 261 | 26 | 278 | 9.45e-57 | 183 |
| MS.gene010412.t1 | MTR_8g007670 | 39.245 | 265 | 149 | 6 | 6 | 261 | 1 | 262 | 2.08e-56 | 182 |
| MS.gene010412.t1 | MTR_8g008500 | 40.385 | 260 | 145 | 6 | 11 | 261 | 26 | 284 | 2.72e-56 | 182 |
| MS.gene010412.t1 | MTR_5g018280 | 38.610 | 259 | 149 | 4 | 10 | 261 | 6 | 261 | 1.64e-55 | 179 |
| MS.gene010412.t1 | MTR_8g007670 | 37.692 | 260 | 116 | 6 | 6 | 261 | 1 | 218 | 1.55e-49 | 162 |
| MS.gene010412.t1 | MTR_7g015220 | 34.783 | 253 | 154 | 3 | 12 | 258 | 124 | 371 | 1.50e-37 | 136 |
| MS.gene010412.t1 | MTR_3g005410 | 35.316 | 269 | 150 | 5 | 3 | 258 | 85 | 342 | 3.63e-37 | 134 |
| MS.gene010412.t1 | MTR_5g068100 | 32.075 | 265 | 157 | 6 | 10 | 262 | 28 | 281 | 6.26e-34 | 124 |
| MS.gene010412.t1 | MTR_3g093730 | 31.837 | 245 | 155 | 5 | 9 | 247 | 33 | 271 | 2.46e-33 | 123 |
| MS.gene010412.t1 | MTR_3g093730 | 47.115 | 104 | 55 | 0 | 9 | 112 | 33 | 136 | 2.62e-31 | 116 |
| MS.gene010412.t1 | MTR_1g034410 | 54.167 | 72 | 27 | 1 | 33 | 98 | 39 | 110 | 7.47e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010412.t1 | AT2G23620 | 52.809 | 267 | 115 | 5 | 1 | 261 | 1 | 262 | 5.60e-92 | 273 |
| MS.gene010412.t1 | AT2G23590 | 49.603 | 252 | 122 | 1 | 10 | 261 | 25 | 271 | 5.86e-86 | 258 |
| MS.gene010412.t1 | AT5G10300 | 51.938 | 258 | 118 | 2 | 8 | 261 | 2 | 257 | 9.28e-86 | 256 |
| MS.gene010412.t1 | AT2G23600 | 48.302 | 265 | 130 | 4 | 1 | 261 | 1 | 262 | 2.63e-84 | 253 |
| MS.gene010412.t1 | AT2G23600 | 48.302 | 265 | 130 | 4 | 1 | 261 | 16 | 277 | 2.92e-84 | 253 |
| MS.gene010412.t1 | AT2G23610 | 46.899 | 258 | 133 | 2 | 8 | 261 | 5 | 262 | 1.99e-82 | 248 |
| MS.gene010412.t1 | AT2G23580 | 47.876 | 259 | 130 | 3 | 8 | 261 | 4 | 262 | 4.09e-82 | 247 |
| MS.gene010412.t1 | AT2G23550 | 48.462 | 260 | 129 | 3 | 7 | 261 | 10 | 269 | 1.21e-79 | 241 |
| MS.gene010412.t1 | AT2G23550 | 48.462 | 260 | 129 | 3 | 7 | 261 | 3 | 262 | 1.49e-79 | 241 |
| MS.gene010412.t1 | AT2G23560 | 43.750 | 256 | 142 | 2 | 8 | 261 | 4 | 259 | 3.57e-75 | 229 |
| MS.gene010412.t1 | AT4G37150 | 44.922 | 256 | 134 | 3 | 11 | 261 | 2 | 255 | 7.12e-75 | 229 |
| MS.gene010412.t1 | AT2G23610 | 43.922 | 255 | 100 | 2 | 8 | 261 | 5 | 217 | 1.62e-71 | 219 |
| MS.gene010412.t1 | AT3G50440 | 42.688 | 253 | 141 | 1 | 13 | 261 | 22 | 274 | 3.54e-67 | 210 |
| MS.gene010412.t1 | AT2G23550 | 42.471 | 259 | 117 | 3 | 7 | 261 | 3 | 233 | 6.36e-62 | 195 |
| MS.gene010412.t1 | AT2G23600 | 48.555 | 173 | 82 | 4 | 1 | 169 | 16 | 185 | 1.75e-54 | 174 |
| MS.gene010412.t1 | AT5G10300 | 52.976 | 168 | 73 | 2 | 8 | 171 | 2 | 167 | 1.54e-51 | 167 |
| MS.gene010412.t1 | AT2G23580 | 46.486 | 185 | 91 | 4 | 7 | 186 | 3 | 184 | 1.54e-49 | 162 |
| MS.gene010412.t1 | AT2G23570 | 46.893 | 177 | 90 | 1 | 89 | 261 | 2 | 178 | 4.58e-49 | 160 |
| MS.gene010412.t1 | AT2G23550 | 45.128 | 195 | 94 | 4 | 7 | 196 | 10 | 196 | 3.83e-48 | 159 |
| MS.gene010412.t1 | AT4G37140 | 55.357 | 112 | 49 | 1 | 10 | 121 | 1 | 111 | 1.01e-40 | 137 |
| MS.gene010412.t1 | AT4G09900 | 37.066 | 259 | 147 | 5 | 9 | 258 | 95 | 346 | 6.98e-40 | 141 |
| MS.gene010412.t1 | AT3G29770 | 37.795 | 254 | 147 | 4 | 11 | 258 | 137 | 385 | 5.68e-39 | 140 |
| MS.gene010412.t1 | AT1G33990 | 35.798 | 257 | 149 | 5 | 11 | 258 | 96 | 345 | 2.21e-38 | 137 |
| MS.gene010412.t1 | AT1G69240 | 33.209 | 268 | 170 | 6 | 3 | 264 | 177 | 441 | 2.75e-36 | 134 |
| MS.gene010412.t1 | AT1G26360 | 33.071 | 254 | 159 | 4 | 11 | 258 | 188 | 436 | 6.01e-35 | 130 |
| MS.gene010412.t1 | AT4G37140 | 57.143 | 91 | 39 | 0 | 11 | 101 | 2 | 92 | 1.97e-33 | 117 |
| MS.gene010412.t1 | AT5G58310 | 31.111 | 270 | 161 | 6 | 10 | 263 | 3 | 263 | 1.22e-32 | 120 |
| MS.gene010412.t1 | AT3G10870 | 46.364 | 110 | 59 | 0 | 3 | 112 | 11 | 120 | 2.14e-32 | 120 |
| MS.gene010412.t1 | AT4G16690 | 32.411 | 253 | 154 | 6 | 12 | 256 | 12 | 255 | 1.26e-28 | 110 |
| MS.gene010412.t1 | AT3G29770 | 50.685 | 73 | 36 | 0 | 12 | 84 | 138 | 210 | 1.74e-15 | 74.7 |
Find 45 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCATCAATCCCAGCATTT+TGG | 0.143115 | 5.4:-11099722 | None:intergenic |
| AATTTATCCAAGGAGGGATA+TGG | 0.283211 | 5.4:+11099627 | MS.gene010412:CDS |
| ATTGAGAGATACCCGGTTAC+TGG | 0.326715 | 5.4:+11099077 | MS.gene010412:CDS |
| ACAACATACTAGTTAAATTT+CGG | 0.329682 | 5.4:-11099837 | None:intergenic |
| GATGGATTGTGTTGAGTATC+AGG | 0.350453 | 5.4:-11098445 | None:intergenic |
| GTTCTTGTTGGACATAGCTT+TGG | 0.363914 | 5.4:+11098346 | MS.gene010412:CDS |
| GTGTCTAACCATCCAGTAAC+CGG | 0.382878 | 5.4:-11099089 | None:intergenic |
| GATGCGGTGAAAGTGATTAA+TGG | 0.393295 | 5.4:+11099738 | MS.gene010412:CDS |
| CTTGTTGGACATAGCTTTGG+AGG | 0.435184 | 5.4:+11098349 | MS.gene010412:CDS |
| GACTTAGCAGGATTTGGAAT+TGG | 0.452172 | 5.4:+11099548 | MS.gene010412:intron |
| TCCATCATATGTTCTAGAAC+AGG | 0.456797 | 5.4:+11098462 | MS.gene010412:CDS |
| GATTAATGGAGCAGATCATA+TGG | 0.479402 | 5.4:+11099752 | MS.gene010412:CDS |
| AACAAAATGCTGTTGTTACC+TGG | 0.480280 | 5.4:+11099131 | MS.gene010412:CDS |
| CTAGTACATGGTGTTAGCGT+TGG | 0.485280 | 5.4:+11098145 | MS.gene010412:CDS |
| ATGGTGTTAGCGTTGGAGCT+TGG | 0.496712 | 5.4:+11098152 | MS.gene010412:CDS |
| ATTTATCCAAGGAGGGATAT+GGG | 0.510344 | 5.4:+11099628 | MS.gene010412:CDS |
| CTTTCAACTCTGCTCCATTG+AGG | 0.515282 | 5.4:+11099178 | MS.gene010412:CDS |
| AGAGATAAACAAAGTTCTTG+AGG | 0.516394 | 5.4:-11099789 | None:intergenic |
| CAATGGATGATCCAAAATGC+TGG | 0.517637 | 5.4:+11099711 | MS.gene010412:CDS |
| TTAGCGTTGGAGCTTGGAGT+TGG | 0.518739 | 5.4:+11098158 | MS.gene010412:CDS |
| ACCTGTTCTAGAACATATGA+TGG | 0.524048 | 5.4:-11098463 | None:intergenic |
| TGATGACTTGGCAATTCCAC+TGG | 0.525862 | 5.4:+11099680 | MS.gene010412:CDS |
| AACCGACCCATATCCCTCCT+TGG | 0.527820 | 5.4:-11099634 | None:intergenic |
| GGCACAATTAAGTACCTCAA+TGG | 0.530565 | 5.4:-11099192 | None:intergenic |
| TATTGTTGCAAATGATGACT+TGG | 0.549585 | 5.4:+11099668 | MS.gene010412:CDS |
| AATGGATGATCCAAAATGCT+GGG | 0.553255 | 5.4:+11099712 | MS.gene010412:CDS |
| GTAGACAAGAACTTTGAGCC+AGG | 0.559075 | 5.4:-11099149 | None:intergenic |
| GCGAAGAATTTATCCAAGGA+GGG | 0.565282 | 5.4:+11099621 | MS.gene010412:CDS |
| TATCAGGAATAAAAGCTGCT+AGG | 0.583140 | 5.4:-11098429 | None:intergenic |
| ATCCAAGGAGGGATATGGGT+CGG | 0.592535 | 5.4:+11099632 | MS.gene010412:CDS |
| AGAGATACCCGGTTACTGGA+TGG | 0.592966 | 5.4:+11099081 | MS.gene010412:CDS |
| AATGAGTATAGCTCTTGCAA+TGG | 0.600234 | 5.4:+11098372 | MS.gene010412:CDS |
| GAGGCTAAGAACTCTAACAA+AGG | 0.608414 | 5.4:-11098301 | None:intergenic |
| ACACTTGACCTTGCAGCTAG+TGG | 0.615932 | 5.4:+11098226 | MS.gene010412:CDS |
| TGACCTACAGATTCTAACTG+TGG | 0.617711 | 5.4:-11098193 | None:intergenic |
| TGTCTAACCATCCAGTAACC+GGG | 0.625170 | 5.4:-11099088 | None:intergenic |
| ATCCATTGTTCATACTCCAG+TGG | 0.633048 | 5.4:-11099696 | None:intergenic |
| AGCGAAGAATTTATCCAAGG+AGG | 0.642147 | 5.4:+11099620 | MS.gene010412:CDS |
| TGAAGCGAAGAATTTATCCA+AGG | 0.646478 | 5.4:+11099617 | MS.gene010412:CDS |
| TTCCACTGGAGTATGAACAA+TGG | 0.648915 | 5.4:+11099694 | MS.gene010412:CDS |
| TGTTGATGCCACTAGCTGCA+AGG | 0.665739 | 5.4:-11098234 | None:intergenic |
| AAACCACAGTTAGAATCTGT+AGG | 0.674566 | 5.4:+11098190 | MS.gene010412:CDS |
| ATAGTATATTGAGAGATACC+CGG | 0.707415 | 5.4:+11099070 | MS.gene010412:intron |
| CCAAAATGCTGGGATTGATG+CGG | 0.708924 | 5.4:+11099722 | MS.gene010412:CDS |
| TTTGCAACAATACAAGCACG+TGG | 0.741755 | 5.4:-11099657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTGTTTATATTC+TGG | + | chr5.4:11099439-11099458 | MS.gene010412:intron | 10.0% |
| !!! | AATATTGTTAATTTTCTTAG+TGG | + | chr5.4:11098570-11098589 | MS.gene010412:intron | 15.0% |
| !! | CCAAAAATTATATATTGTGA+CGG | + | chr5.4:11099513-11099532 | MS.gene010412:intron | 20.0% |
| !!! | AATTGGTGAAGATTTTAATA+AGG | + | chr5.4:11099565-11099584 | MS.gene010412:CDS | 20.0% |
| !!! | CGTCACAATATATAATTTTT+GGG | - | chr5.4:11099515-11099534 | None:intergenic | 20.0% |
| !!! | TCACTAAAGTCTAAAATATA+TGG | + | chr5.4:11099284-11099303 | MS.gene010412:intron | 20.0% |
| ! | TTATCCTAGTTTACATTTGA+TGG | - | chr5.4:11098659-11098678 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATGTAAACT+AGG | + | chr5.4:11098652-11098671 | MS.gene010412:intron | 25.0% |
| ! | TTTCCTGAAAAAATTGAAGT+TGG | + | chr5.4:11098400-11098419 | MS.gene010412:CDS | 25.0% |
| !! | CCGTCACAATATATAATTTT+TGG | - | chr5.4:11099516-11099535 | None:intergenic | 25.0% |
| !! | TTTTGTCCTCTAAATATGTA+AGG | + | chr5.4:11099256-11099275 | MS.gene010412:intron | 25.0% |
| !!! | ATATTTTAGACTTTAGTGAC+AGG | - | chr5.4:11099283-11099302 | None:intergenic | 25.0% |
| !!! | ATTCCAACTTCAATTTTTTC+AGG | - | chr5.4:11098406-11098425 | None:intergenic | 25.0% |
| !!! | TATTTTAGACTTTAGTGACA+GGG | - | chr5.4:11099282-11099301 | None:intergenic | 25.0% |
| !!! | TGATGATATGTGTTTTAAGT+TGG | + | chr5.4:11098839-11098858 | MS.gene010412:intron | 25.0% |
| AATGAAAAAGTGGTTCTTGT+TGG | + | chr5.4:11098334-11098353 | MS.gene010412:CDS | 30.0% | |
| AATTACGCGATTAGTAAAAC+TGG | + | chr5.4:11099308-11099327 | MS.gene010412:intron | 30.0% | |
| ACTTGATCCAAATGAAAAAG+TGG | + | chr5.4:11098324-11098343 | MS.gene010412:CDS | 30.0% | |
| AGAGATAAACAAAGTTCTTG+AGG | - | chr5.4:11099792-11099811 | None:intergenic | 30.0% | |
| ATAGTATATTGAGAGATACC+CGG | + | chr5.4:11099070-11099089 | MS.gene010412:intron | 30.0% | |
| GTAAAAACTGCAAAGATAGA+TGG | - | chr5.4:11099216-11099235 | None:intergenic | 30.0% | |
| TATTGTTGCAAATGATGACT+TGG | + | chr5.4:11099668-11099687 | MS.gene010412:CDS | 30.0% | |
| ! | AAGCATTTTGTTCTAGTACA+TGG | + | chr5.4:11098133-11098152 | MS.gene010412:CDS | 30.0% |
| ! | ACTTGGATCATTTTGTGATA+TGG | + | chr5.4:11099047-11099066 | MS.gene010412:intron | 30.0% |
| ! | GAACAAAATGCTTCTGTTTT+TGG | - | chr5.4:11098126-11098145 | None:intergenic | 30.0% |
| ! | TTAGACACTGAGTTTTCATT+TGG | + | chr5.4:11099104-11099123 | MS.gene010412:CDS | 30.0% |
| ! | TTTTTCATTTGGATCAAGTG+AGG | - | chr5.4:11098323-11098342 | None:intergenic | 30.0% |
| !! | GTGAAGATTTTAATAAGGAC+AGG | + | chr5.4:11099570-11099589 | MS.gene010412:CDS | 30.0% |
| !!! | ACAAGAACCACTTTTTCATT+TGG | - | chr5.4:11098334-11098353 | None:intergenic | 30.0% |
| AAAAAGAATACGTCAACAGC+AGG | + | chr5.4:11098747-11098766 | MS.gene010412:intron | 35.0% | |
| AAAAGAATACGTCAACAGCA+GGG | + | chr5.4:11098748-11098767 | MS.gene010412:intron | 35.0% | |
| AAACCACAGTTAGAATCTGT+AGG | + | chr5.4:11098190-11098209 | MS.gene010412:CDS | 35.0% | |
| AACAAAATGCTGTTGTTACC+TGG | + | chr5.4:11099131-11099150 | MS.gene010412:CDS | 35.0% | |
| AATGAGTATAGCTCTTGCAA+TGG | + | chr5.4:11098372-11098391 | MS.gene010412:CDS | 35.0% | |
| AATGGATGATCCAAAATGCT+GGG | + | chr5.4:11099712-11099731 | MS.gene010412:CDS | 35.0% | |
| AATTTATCCAAGGAGGGATA+TGG | + | chr5.4:11099627-11099646 | MS.gene010412:CDS | 35.0% | |
| AGACAGACTTGAAATCTGTT+GGG | - | chr5.4:11098795-11098814 | None:intergenic | 35.0% | |
| ATCACAAAATGATCCAAGTC+AGG | - | chr5.4:11099046-11099065 | None:intergenic | 35.0% | |
| ATTTATCCAAGGAGGGATAT+GGG | + | chr5.4:11099628-11099647 | MS.gene010412:CDS | 35.0% | |
| GATTAATGGAGCAGATCATA+TGG | + | chr5.4:11099752-11099771 | MS.gene010412:CDS | 35.0% | |
| TATCAGGAATAAAAGCTGCT+AGG | - | chr5.4:11098432-11098451 | None:intergenic | 35.0% | |
| TGAAGCGAAGAATTTATCCA+AGG | + | chr5.4:11099617-11099636 | MS.gene010412:CDS | 35.0% | |
| TTAATTTACCTGACCTGACT+TGG | + | chr5.4:11099030-11099049 | MS.gene010412:intron | 35.0% | |
| !! | ACCTGTTCTAGAACATATGA+TGG | - | chr5.4:11098466-11098485 | None:intergenic | 35.0% |
| !! | TCCATCATATGTTCTAGAAC+AGG | + | chr5.4:11098462-11098481 | MS.gene010412:CDS | 35.0% |
| AAAATGATCCAAGTCAGGTC+AGG | - | chr5.4:11099041-11099060 | None:intergenic | 40.0% | |
| AAATCCTGCTAAGTCCACAA+TGG | - | chr5.4:11099543-11099562 | None:intergenic | 40.0% | |
| AATCCTGCTAAGTCCACAAT+GGG | - | chr5.4:11099542-11099561 | None:intergenic | 40.0% | |
| ACAGGGCCTTACATATTTAG+AGG | - | chr5.4:11099265-11099284 | None:intergenic | 40.0% | |
| AGCGAAGAATTTATCCAAGG+AGG | + | chr5.4:11099620-11099639 | MS.gene010412:CDS | 40.0% | |
| ATCCATTGTTCATACTCCAG+TGG | - | chr5.4:11099699-11099718 | None:intergenic | 40.0% | |
| ATTGTGGACTTAGCAGGATT+TGG | + | chr5.4:11099542-11099561 | MS.gene010412:intron | 40.0% | |
| CAATGGATGATCCAAAATGC+TGG | + | chr5.4:11099711-11099730 | MS.gene010412:CDS | 40.0% | |
| GAGACAGACTTGAAATCTGT+TGG | - | chr5.4:11098796-11098815 | None:intergenic | 40.0% | |
| GAGGCTAAGAACTCTAACAA+AGG | - | chr5.4:11098304-11098323 | None:intergenic | 40.0% | |
| GATGCGGTGAAAGTGATTAA+TGG | + | chr5.4:11099738-11099757 | MS.gene010412:CDS | 40.0% | |
| GCGAAGAATTTATCCAAGGA+GGG | + | chr5.4:11099621-11099640 | MS.gene010412:CDS | 40.0% | |
| GGCACAATTAAGTACCTCAA+TGG | - | chr5.4:11099195-11099214 | None:intergenic | 40.0% | |
| GTTCTTGTTGGACATAGCTT+TGG | + | chr5.4:11098346-11098365 | MS.gene010412:CDS | 40.0% | |
| TCAATATGTCCGAGTGGTTA+AGG | - | chr5.4:11098818-11098837 | None:intergenic | 40.0% | |
| TGACCTACAGATTCTAACTG+TGG | - | chr5.4:11098196-11098215 | None:intergenic | 40.0% | |
| TTCCACTGGAGTATGAACAA+TGG | + | chr5.4:11099694-11099713 | MS.gene010412:CDS | 40.0% | |
| TTTGCAACAATACAAGCACG+TGG | - | chr5.4:11099660-11099679 | None:intergenic | 40.0% | |
| ! | GACACTGAGTTTTCATTTGG+TGG | + | chr5.4:11099107-11099126 | MS.gene010412:CDS | 40.0% |
| ! | GACTTAGCAGGATTTGGAAT+TGG | + | chr5.4:11099548-11099567 | MS.gene010412:intron | 40.0% |
| !! | GATGGATTGTGTTGAGTATC+AGG | - | chr5.4:11098448-11098467 | None:intergenic | 40.0% |
| !!! | GACAGGATCACTTTTTCTTG+AGG | + | chr5.4:11099587-11099606 | MS.gene010412:CDS | 40.0% |
| AGTCTGTCTCCTTAACCACT+CGG | + | chr5.4:11098806-11098825 | MS.gene010412:intron | 45.0% | |
| ATCCTGCTAAGTCCACAATG+GGG | - | chr5.4:11099541-11099560 | None:intergenic | 45.0% | |
| ATTGAGAGATACCCGGTTAC+TGG | + | chr5.4:11099077-11099096 | MS.gene010412:CDS | 45.0% | |
| CATCAGTCAATATGTCCGAG+TGG | - | chr5.4:11098824-11098843 | None:intergenic | 45.0% | |
| CCAAAATGCTGGGATTGATG+CGG | + | chr5.4:11099722-11099741 | MS.gene010412:CDS | 45.0% | |
| CTTTCAACTCTGCTCCATTG+AGG | + | chr5.4:11099178-11099197 | MS.gene010412:CDS | 45.0% | |
| GTAGACAAGAACTTTGAGCC+AGG | - | chr5.4:11099152-11099171 | None:intergenic | 45.0% | |
| GTGTCTAACCATCCAGTAAC+CGG | - | chr5.4:11099092-11099111 | None:intergenic | 45.0% | |
| TGTCTAACCATCCAGTAACC+GGG | - | chr5.4:11099091-11099110 | None:intergenic | 45.0% | |
| ! | CTAGTACATGGTGTTAGCGT+TGG | + | chr5.4:11098145-11098164 | MS.gene010412:CDS | 45.0% |
| ! | TGATGACTTGGCAATTCCAC+TGG | + | chr5.4:11099680-11099699 | MS.gene010412:CDS | 45.0% |
| !! | CTTGTTGGACATAGCTTTGG+AGG | + | chr5.4:11098349-11098368 | MS.gene010412:CDS | 45.0% |
| ACACTTGACCTTGCAGCTAG+TGG | + | chr5.4:11098226-11098245 | MS.gene010412:CDS | 50.0% | |
| AGAGATACCCGGTTACTGGA+TGG | + | chr5.4:11099081-11099100 | MS.gene010412:CDS | 50.0% | |
| ATCCAAGGAGGGATATGGGT+CGG | + | chr5.4:11099632-11099651 | MS.gene010412:CDS | 50.0% | |
| TGTTGATGCCACTAGCTGCA+AGG | - | chr5.4:11098237-11098256 | None:intergenic | 50.0% | |
| ! | ATGGTGTTAGCGTTGGAGCT+TGG | + | chr5.4:11098152-11098171 | MS.gene010412:CDS | 50.0% |
| ! | CCGCATCAATCCCAGCATTT+TGG | - | chr5.4:11099725-11099744 | None:intergenic | 50.0% |
| ! | TTAGCGTTGGAGCTTGGAGT+TGG | + | chr5.4:11098158-11098177 | MS.gene010412:CDS | 50.0% |
| AACCGACCCATATCCCTCCT+TGG | - | chr5.4:11099637-11099656 | None:intergenic | 55.0% | |
| ATTGTGACGGTGCCCCATTG+TGG | + | chr5.4:11099526-11099545 | MS.gene010412:intron | 55.0% | |
| TGCCCCATTGTGGACTTAGC+AGG | + | chr5.4:11099536-11099555 | MS.gene010412:intron | 55.0% | |
| AGCAGGGTTCGAACCTGCGC+GGG | + | chr5.4:11098764-11098783 | MS.gene010412:intron | 65.0% | |
| CAGCAGGGTTCGAACCTGCG+CGG | + | chr5.4:11098763-11098782 | MS.gene010412:intron | 65.0% | |
| CTGTTGGGCTTCGCCCGCGC+AGG | - | chr5.4:11098780-11098799 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11098103 | 11099851 | 11098103 | ID=MS.gene010412 |
| chr5.4 | mRNA | 11098103 | 11099851 | 11098103 | ID=MS.gene010412.t1;Parent=MS.gene010412 |
| chr5.4 | exon | 11098103 | 11098483 | 11098103 | ID=MS.gene010412.t1.exon1;Parent=MS.gene010412.t1 |
| chr5.4 | CDS | 11098103 | 11098483 | 11098103 | ID=cds.MS.gene010412.t1;Parent=MS.gene010412.t1 |
| chr5.4 | exon | 11099074 | 11099199 | 11099074 | ID=MS.gene010412.t1.exon2;Parent=MS.gene010412.t1 |
| chr5.4 | CDS | 11099074 | 11099199 | 11099074 | ID=cds.MS.gene010412.t1;Parent=MS.gene010412.t1 |
| chr5.4 | exon | 11099558 | 11099851 | 11099558 | ID=MS.gene010412.t1.exon3;Parent=MS.gene010412.t1 |
| chr5.4 | CDS | 11099558 | 11099851 | 11099558 | ID=cds.MS.gene010412.t1;Parent=MS.gene010412.t1 |
| Gene Sequence |
| Protein sequence |
