Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28543.t1 | KEH20488.1 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 1.80E-143 | 518.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28543.t1 | Q6RYA0 | 59.6 | 255 | 99 | 1 | 10 | 260 | 5 | 259 | 2.9e-89 | 329.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28543.t1 | A0A072TUI1 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 1.3e-143 | 518.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05985 | MS.gene28543 | -0.819823 | 9.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87350 | MS.gene28543 | PPI |
| MS.gene28543 | MS.gene39388 | PPI |
| MS.gene28543 | MS.gene39389 | PPI |
| MS.gene28543 | MS.gene047689 | PPI |
| MS.gene28543 | MS.gene037828 | PPI |
| MS.gene28543 | MS.gene037826 | PPI |
| MS.gene28543 | MS.gene037829 | PPI |
| MS.gene28543 | MS.gene39712 | PPI |
| MS.gene28543 | MS.gene041145 | PPI |
| MS.gene28543 | MS.gene89919 | PPI |
| MS.gene28543 | MS.gene010409 | PPI |
| MS.gene28543 | MS.gene010412 | PPI |
| MS.gene28543 | MS.gene39710 | PPI |
| MS.gene28543 | MS.gene047686 | PPI |
| MS.gene28543 | MS.gene022654 | PPI |
| MS.gene28543 | MS.gene39709 | PPI |
| MS.gene28543 | MS.gene041151 | PPI |
| MS.gene28543 | MS.gene041144 | PPI |
| MS.gene28543 | MS.gene022655 | PPI |
| MS.gene28543 | MS.gene047684 | PPI |
| MS.gene28543 | MS.gene56982 | PPI |
| MS.gene28543 | MS.gene39713 | PPI |
| MS.gene28543 | MS.gene047685 | PPI |
| MS.gene28543 | MS.gene87350 | PPI |
| MS.gene28543 | MS.gene011884 | PPI |
| MS.gene28543 | MS.gene010408 | PPI |
| MS.gene28543 | MS.gene44962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28543.t1 | MTR_8g079120 | 95.769 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 0.0 | 525 |
| MS.gene28543.t1 | MTR_8g079120 | 94.643 | 168 | 9 | 0 | 1 | 168 | 43 | 210 | 3.31e-118 | 337 |
| MS.gene28543.t1 | MTR_5g018365 | 62.302 | 252 | 95 | 0 | 9 | 260 | 10 | 261 | 2.68e-116 | 334 |
| MS.gene28543.t1 | MTR_5g018350 | 59.200 | 250 | 102 | 0 | 11 | 260 | 7 | 256 | 2.64e-108 | 313 |
| MS.gene28543.t1 | MTR_5g018300 | 42.912 | 261 | 144 | 2 | 5 | 260 | 2 | 262 | 1.96e-73 | 225 |
| MS.gene28543.t1 | MTR_5g018320 | 45.525 | 257 | 131 | 4 | 11 | 260 | 5 | 259 | 9.12e-73 | 223 |
| MS.gene28543.t1 | MTR_8g007675 | 43.191 | 257 | 137 | 5 | 11 | 260 | 32 | 286 | 3.04e-68 | 213 |
| MS.gene28543.t1 | MTR_3g464040 | 41.634 | 257 | 140 | 4 | 10 | 260 | 18 | 270 | 3.73e-66 | 207 |
| MS.gene28543.t1 | MTR_5g018280 | 40.856 | 257 | 146 | 3 | 9 | 260 | 6 | 261 | 3.82e-65 | 204 |
| MS.gene28543.t1 | MTR_8g008660 | 42.023 | 257 | 139 | 5 | 10 | 260 | 26 | 278 | 7.13e-63 | 199 |
| MS.gene28543.t1 | MTR_8g008505 | 41.313 | 259 | 140 | 5 | 10 | 260 | 27 | 281 | 4.66e-61 | 194 |
| MS.gene28543.t1 | MTR_8g007670 | 40.385 | 260 | 145 | 5 | 9 | 260 | 5 | 262 | 3.74e-60 | 191 |
| MS.gene28543.t1 | MTR_8g008500 | 38.996 | 259 | 150 | 5 | 10 | 260 | 26 | 284 | 9.54e-59 | 188 |
| MS.gene28543.t1 | MTR_8g007670 | 39.062 | 256 | 110 | 5 | 9 | 260 | 5 | 218 | 4.13e-55 | 177 |
| MS.gene28543.t1 | MTR_7g015220 | 33.730 | 252 | 158 | 3 | 11 | 257 | 124 | 371 | 3.30e-37 | 135 |
| MS.gene28543.t1 | MTR_3g005410 | 33.077 | 260 | 158 | 5 | 7 | 257 | 90 | 342 | 2.04e-36 | 132 |
| MS.gene28543.t1 | MTR_3g093730 | 32.927 | 246 | 153 | 5 | 7 | 246 | 32 | 271 | 4.85e-34 | 124 |
| MS.gene28543.t1 | MTR_5g068100 | 31.395 | 258 | 166 | 4 | 9 | 260 | 28 | 280 | 4.86e-34 | 124 |
| MS.gene28543.t1 | MTR_3g093730 | 31.148 | 244 | 115 | 5 | 7 | 246 | 32 | 226 | 4.71e-30 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28543.t1 | AT2G23620 | 54.086 | 257 | 114 | 2 | 9 | 261 | 7 | 263 | 2.93e-102 | 298 |
| MS.gene28543.t1 | AT2G23610 | 52.734 | 256 | 117 | 3 | 9 | 260 | 7 | 262 | 4.41e-94 | 278 |
| MS.gene28543.t1 | AT2G23600 | 52.964 | 253 | 115 | 2 | 9 | 257 | 7 | 259 | 5.14e-94 | 277 |
| MS.gene28543.t1 | AT2G23600 | 52.964 | 253 | 115 | 2 | 9 | 257 | 22 | 274 | 5.57e-94 | 278 |
| MS.gene28543.t1 | AT2G23590 | 47.638 | 254 | 128 | 1 | 7 | 260 | 23 | 271 | 1.19e-88 | 264 |
| MS.gene28543.t1 | AT4G37150 | 48.627 | 255 | 126 | 2 | 10 | 260 | 2 | 255 | 6.17e-88 | 262 |
| MS.gene28543.t1 | AT2G23580 | 49.805 | 257 | 124 | 2 | 9 | 260 | 6 | 262 | 9.97e-88 | 261 |
| MS.gene28543.t1 | AT5G10300 | 49.027 | 257 | 125 | 2 | 9 | 261 | 4 | 258 | 8.74e-87 | 259 |
| MS.gene28543.t1 | AT2G23550 | 48.638 | 257 | 127 | 2 | 9 | 260 | 6 | 262 | 1.33e-83 | 251 |
| MS.gene28543.t1 | AT2G23550 | 48.638 | 257 | 127 | 2 | 9 | 260 | 13 | 269 | 1.61e-83 | 251 |
| MS.gene28543.t1 | AT2G23560 | 46.063 | 254 | 135 | 2 | 9 | 260 | 6 | 259 | 6.38e-80 | 241 |
| MS.gene28543.t1 | AT2G23610 | 46.640 | 253 | 92 | 2 | 9 | 260 | 7 | 217 | 1.09e-77 | 234 |
| MS.gene28543.t1 | AT3G50440 | 43.478 | 253 | 139 | 2 | 12 | 260 | 22 | 274 | 1.04e-72 | 224 |
| MS.gene28543.t1 | AT2G23550 | 45.312 | 256 | 108 | 2 | 9 | 260 | 6 | 233 | 8.50e-70 | 215 |
| MS.gene28543.t1 | AT2G23600 | 52.439 | 164 | 74 | 2 | 9 | 168 | 22 | 185 | 7.13e-59 | 185 |
| MS.gene28543.t1 | AT2G23570 | 48.315 | 178 | 88 | 1 | 87 | 260 | 1 | 178 | 6.57e-53 | 170 |
| MS.gene28543.t1 | AT2G23580 | 48.045 | 179 | 85 | 3 | 9 | 182 | 6 | 181 | 9.31e-53 | 170 |
| MS.gene28543.t1 | AT2G23550 | 47.273 | 165 | 82 | 2 | 9 | 168 | 13 | 177 | 3.17e-50 | 164 |
| MS.gene28543.t1 | AT5G10300 | 47.590 | 166 | 81 | 2 | 9 | 170 | 4 | 167 | 1.99e-47 | 157 |
| MS.gene28543.t1 | AT4G37140 | 53.846 | 117 | 54 | 0 | 10 | 126 | 2 | 118 | 2.99e-45 | 149 |
| MS.gene28543.t1 | AT4G09900 | 33.074 | 257 | 156 | 5 | 10 | 257 | 97 | 346 | 1.79e-39 | 140 |
| MS.gene28543.t1 | AT1G26360 | 32.669 | 251 | 164 | 2 | 10 | 257 | 188 | 436 | 4.25e-39 | 141 |
| MS.gene28543.t1 | AT1G33990 | 32.443 | 262 | 164 | 5 | 3 | 257 | 90 | 345 | 4.87e-39 | 139 |
| MS.gene28543.t1 | AT3G29770 | 35.294 | 255 | 150 | 5 | 11 | 257 | 138 | 385 | 1.60e-37 | 136 |
| MS.gene28543.t1 | AT5G58310 | 32.700 | 263 | 160 | 5 | 7 | 257 | 1 | 258 | 2.50e-37 | 132 |
| MS.gene28543.t1 | AT4G37140 | 58.242 | 91 | 38 | 0 | 10 | 100 | 2 | 92 | 4.31e-37 | 127 |
| MS.gene28543.t1 | AT1G69240 | 31.518 | 257 | 161 | 6 | 10 | 257 | 186 | 436 | 1.68e-36 | 134 |
| MS.gene28543.t1 | AT4G16690 | 31.707 | 246 | 153 | 4 | 11 | 249 | 12 | 249 | 3.24e-33 | 122 |
| MS.gene28543.t1 | AT3G10870 | 30.738 | 244 | 157 | 5 | 11 | 246 | 20 | 259 | 9.02e-31 | 115 |
| MS.gene28543.t1 | AT3G29770 | 40.278 | 72 | 43 | 0 | 11 | 82 | 138 | 209 | 2.82e-12 | 65.5 |
Find 67 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATTAATCCCAGCATTT+TGG | 0.157812 | 8.4:-27649056 | None:intergenic |
| GAGCTTATTGGACAAGAATT+TGG | 0.162838 | 8.4:-27648700 | None:intergenic |
| GAGGCCAGGGTCCCTCTTTA+TGG | 0.202954 | 8.4:+27648918 | MS.gene28543:CDS |
| ATTCTTGATCTTTCAGCTTC+TGG | 0.204836 | 8.4:+27646896 | MS.gene28543:CDS |
| AACAAAACATCAATGTTCTT+TGG | 0.296879 | 8.4:+27648675 | MS.gene28543:CDS |
| GCAAGATAACTTCTCTAAAC+AGG | 0.300900 | 8.4:+27648954 | MS.gene28543:CDS |
| AGCTTATTGGACAAGAATTT+GGG | 0.339872 | 8.4:-27648699 | None:intergenic |
| AACTTCTCTAAACAGGGTTA+TGG | 0.360676 | 8.4:+27648961 | MS.gene28543:CDS |
| ATTCTTGTGGGTCACAGTCT+TGG | 0.390920 | 8.4:+27647016 | MS.gene28543:CDS |
| GGAGTGTTGATAGAGCTTAT+TGG | 0.392660 | 8.4:-27648712 | None:intergenic |
| ACTTCTCTAAACAGGGTTAT+GGG | 0.399672 | 8.4:+27648962 | MS.gene28543:CDS |
| TACAAGAACATAATGCTTCC+TGG | 0.408270 | 8.4:-27646798 | None:intergenic |
| AATGGAACAATTTCCAGAAA+AGG | 0.417631 | 8.4:+27647060 | MS.gene28543:CDS |
| ATCCAGTGTTGAAATTTCAA+TGG | 0.421026 | 8.4:-27649030 | None:intergenic |
| GATTTAGCAGGATCTTGAAT+TGG | 0.423617 | 8.4:+27648882 | MS.gene28543:intron |
| TGAACCATTGTTGAAGCTAA+TGG | 0.426644 | 8.4:+27646967 | MS.gene28543:CDS |
| ATCTTCAAGTTTCTTCAAGT+TGG | 0.431463 | 8.4:-27646921 | None:intergenic |
| CTTGTGGGTCACAGTCTTGG+AGG | 0.449534 | 8.4:+27647019 | MS.gene28543:CDS |
| TGCTTCTTATGTCATGGAAA+AGG | 0.451368 | 8.4:+27647132 | MS.gene28543:CDS |
| CACTGGATGATCCAAAATGC+TGG | 0.456893 | 8.4:+27649045 | MS.gene28543:CDS |
| GATCAAAGGGGCAGATCATA+TGG | 0.460208 | 8.4:+27649086 | MS.gene28543:CDS |
| TGTCCAACCATTCAGCCGTC+GGG | 0.460887 | 8.4:-27648632 | None:intergenic |
| ATGATGTATATGAGATCAAA+GGG | 0.461047 | 8.4:+27649073 | MS.gene28543:CDS |
| GTGCACAAAATTTAATTGCC+AGG | 0.464454 | 8.4:+27646780 | MS.gene28543:CDS |
| ATGGTGCTTGCCATGGTGCT+TGG | 0.470545 | 8.4:+27646822 | MS.gene28543:CDS |
| TTCCATTGAAATTTCAACAC+TGG | 0.470781 | 8.4:+27649028 | MS.gene28543:CDS |
| GCCAAGACTTTATTGAGGCC+AGG | 0.472046 | 8.4:+27648904 | MS.gene28543:CDS |
| CACAATTCCACCAAATGAAA+AGG | 0.475812 | 8.4:+27646991 | MS.gene28543:CDS |
| CTTGCCATGGTGCTTGGAGT+TGG | 0.476673 | 8.4:+27646828 | MS.gene28543:CDS |
| GAAGCATTGTGTTGAATGTC+CGG | 0.482394 | 8.4:-27647115 | None:intergenic |
| CCCTGGCCTCAATAAAGTCT+TGG | 0.486588 | 8.4:-27648905 | None:intergenic |
| ACACAATGCTTCTTATGTCA+TGG | 0.491092 | 8.4:+27647126 | MS.gene28543:CDS |
| AATGAAAAGGTGATTCTTGT+GGG | 0.497441 | 8.4:+27647004 | MS.gene28543:CDS |
| CTTGTACATGGTGCTTGCCA+TGG | 0.498303 | 8.4:+27646815 | MS.gene28543:CDS |
| TACCCCGACGGCTGAATGGT+TGG | 0.505808 | 8.4:+27648629 | MS.gene28543:CDS |
| AGAGTACCCCGACGGCTGAA+TGG | 0.512702 | 8.4:+27648625 | MS.gene28543:CDS |
| ATTGTTTGCAATGAAGACCT+TGG | 0.520269 | 8.4:+27649003 | MS.gene28543:CDS |
| AGAGAATTACATAGTTCTTG+TGG | 0.522605 | 8.4:-27649123 | None:intergenic |
| CCAAGACTTTATTGAGGCCA+GGG | 0.522924 | 8.4:+27648905 | MS.gene28543:CDS |
| GAAATTTCAATGGAATTCCA+AGG | 0.525367 | 8.4:-27649020 | None:intergenic |
| GTGTCCAACCATTCAGCCGT+CGG | 0.529692 | 8.4:-27648633 | None:intergenic |
| AAGCATTATGTTCTTGTACA+TGG | 0.539785 | 8.4:+27646803 | MS.gene28543:CDS |
| AATGATGTATATGAGATCAA+AGG | 0.543714 | 8.4:+27649072 | MS.gene28543:CDS |
| AAATGAAAAGGTGATTCTTG+TGG | 0.544198 | 8.4:+27647003 | MS.gene28543:CDS |
| TTTCCAGAAAAGGTTGCCGT+TGG | 0.552011 | 8.4:+27647070 | MS.gene28543:CDS |
| AATTGGCCAAGACTTTATTG+AGG | 0.557607 | 8.4:+27648899 | MS.gene28543:CDS |
| TGGTGCTTGGAGTTGGTACA+AGG | 0.561033 | 8.4:+27646835 | MS.gene28543:CDS |
| GTGGCCATTAGCTTCAACAA+TGG | 0.573860 | 8.4:-27646971 | None:intergenic |
| GAGTCAAGTCTTCCATAAAG+AGG | 0.579389 | 8.4:-27648930 | None:intergenic |
| AAGCCACGTTTAGAATCTGC+TGG | 0.586149 | 8.4:+27646860 | MS.gene28543:CDS |
| ACTGGATGATCCAAAATGCT+GGG | 0.589459 | 8.4:+27649046 | MS.gene28543:CDS |
| CAAGATAACTTCTCTAAACA+GGG | 0.605122 | 8.4:+27648955 | MS.gene28543:CDS |
| ACTTAGCATAGCTCTTGCAA+TGG | 0.605259 | 8.4:+27647042 | MS.gene28543:CDS |
| AGTCAAGTCTTCCATAAAGA+GGG | 0.612508 | 8.4:-27648929 | None:intergenic |
| TTTAGAATCTGCTGGTCATG+TGG | 0.623515 | 8.4:+27646868 | MS.gene28543:CDS |
| GACACTGAATTCTGCCAGTG+TGG | 0.627184 | 8.4:+27648651 | MS.gene28543:CDS |
| TCTTCCATAAAGAGGGACCC+TGG | 0.632528 | 8.4:-27648922 | None:intergenic |
| GTCCAACCATTCAGCCGTCG+GGG | 0.648788 | 8.4:-27648631 | None:intergenic |
| ACGTGTAGTTACCTCAGTGG+AGG | 0.650895 | 8.4:-27648733 | None:intergenic |
| AGCTGTTAAGAAAACACCAA+CGG | 0.651976 | 8.4:-27647086 | None:intergenic |
| TTAACGTGTAGTTACCTCAG+TGG | 0.666283 | 8.4:-27648736 | None:intergenic |
| TTGCAAACAATAAAAGCACG+TGG | 0.692906 | 8.4:-27648991 | None:intergenic |
| TGTACCAACTCCAAGCACCA+TGG | 0.696634 | 8.4:-27646832 | None:intergenic |
| TGACCAGCAGATTCTAAACG+TGG | 0.719220 | 8.4:-27646863 | None:intergenic |
| GTATATTGAGAGTACCCCGA+CGG | 0.725457 | 8.4:+27648617 | MS.gene28543:intron |
| TGATGTATATGAGATCAAAG+GGG | 0.769291 | 8.4:+27649074 | MS.gene28543:CDS |
| CTATCAACACTCCTCCACTG+AGG | 0.776664 | 8.4:+27648722 | MS.gene28543:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACAAAAAATAAGATTAA+TGG | - | chr8.4:27648586-27648605 | None:intergenic | 10.0% |
| !! | TTATAACAAAATTTAGATTA+GGG | + | chr8.4:27648030-27648049 | MS.gene28543:intron | 10.0% |
| !! | TTTATAACAAAATTTAGATT+AGG | + | chr8.4:27648029-27648048 | MS.gene28543:intron | 10.0% |
| !!! | AAATACATTTTATTCATTTA+TGG | - | chr8.4:27647876-27647895 | None:intergenic | 10.0% |
| !!! | CATAATAAGTAATTTTTATT+TGG | - | chr8.4:27647960-27647979 | None:intergenic | 10.0% |
| !! | ACGTATAATAAAACATAAAA+AGG | - | chr8.4:27647515-27647534 | None:intergenic | 15.0% |
| !! | CCTATATTTATAAAAACAAA+TGG | - | chr8.4:27648217-27648236 | None:intergenic | 15.0% |
| !! | CGTATAATAAAACATAAAAA+GGG | - | chr8.4:27647514-27647533 | None:intergenic | 15.0% |
| !! | GTATAATAAAACATAAAAAG+GGG | - | chr8.4:27647513-27647532 | None:intergenic | 15.0% |
| !! | TATAATAAAACATAAAAAGG+GGG | - | chr8.4:27647512-27647531 | None:intergenic | 15.0% |
| !!! | CCATTTGTTTTTATAAATAT+AGG | + | chr8.4:27648214-27648233 | MS.gene28543:intron | 15.0% |
| !!! | TAGTTTTTATGAAATTTTGT+AGG | + | chr8.4:27647258-27647277 | MS.gene28543:intron | 15.0% |
| !! | ATAATAAAACATAAAAAGGG+GGG | - | chr8.4:27647511-27647530 | None:intergenic | 20.0% |
| !! | ATTTGTCCATTACAATAAAA+TGG | + | chr8.4:27647553-27647572 | MS.gene28543:intron | 20.0% |
| !! | CATTAATTATTGAAGAGATA+TGG | + | chr8.4:27648537-27648556 | MS.gene28543:intron | 20.0% |
| !! | TCACAAATATGATTTCTATA+TGG | + | chr8.4:27647214-27647233 | MS.gene28543:intron | 20.0% |
| !! | TCATACAAGAAAAATAGATT+AGG | + | chr8.4:27648254-27648273 | MS.gene28543:intron | 20.0% |
| !! | TTGAAGTTTCCATTAAAAAA+TGG | + | chr8.4:27648821-27648840 | MS.gene28543:intron | 20.0% |
| !!! | AATTGTACTCCATTTTTTAA+TGG | - | chr8.4:27648833-27648852 | None:intergenic | 20.0% |
| !!! | AATTTTAAAACGACAAGTAA+GGG | - | chr8.4:27648509-27648528 | None:intergenic | 20.0% |
| !!! | AGTTAAATTCTTGATACTTT+TGG | - | chr8.4:27647705-27647724 | None:intergenic | 20.0% |
| !!! | TAACTATTTAGCATTTTTGT+CGG | + | chr8.4:27647415-27647434 | MS.gene28543:intron | 20.0% |
| !!! | TTTTTATGAAATTTTGTAGG+TGG | + | chr8.4:27647261-27647280 | MS.gene28543:intron | 20.0% |
| ! | AAAACAAAACTTTCCAGTTT+CGG | - | chr8.4:27647581-27647600 | None:intergenic | 25.0% |
| ! | AACAAAACATCAATGTTCTT+TGG | + | chr8.4:27648675-27648694 | MS.gene28543:CDS | 25.0% |
| ! | AAGACACTTAAAAAGATATC+GGG | + | chr8.4:27647364-27647383 | MS.gene28543:intron | 25.0% |
| ! | AATGATGTATATGAGATCAA+AGG | + | chr8.4:27649072-27649091 | MS.gene28543:CDS | 25.0% |
| ! | ACTAATAAAGACAAACTACT+TGG | + | chr8.4:27648860-27648879 | MS.gene28543:intron | 25.0% |
| ! | AGAAGAACATGTAATAGAAA+AGG | - | chr8.4:27647469-27647488 | None:intergenic | 25.0% |
| ! | ATATAAAACGACAAGTAAGT+AGG | - | chr8.4:27648372-27648391 | None:intergenic | 25.0% |
| ! | ATGATGTATATGAGATCAAA+GGG | + | chr8.4:27649073-27649092 | MS.gene28543:CDS | 25.0% |
| ! | CAAGACACTTAAAAAGATAT+CGG | + | chr8.4:27647363-27647382 | MS.gene28543:intron | 25.0% |
| !! | TCTAAGACAATTAAGTAAAC+TGG | - | chr8.4:27648475-27648494 | None:intergenic | 25.0% |
| !! | TTCCTCTTAATTTGAATTTG+TGG | + | chr8.4:27647998-27648017 | MS.gene28543:intron | 25.0% |
| !!! | GAATTTTAAAACGACAAGTA+AGG | - | chr8.4:27648510-27648529 | None:intergenic | 25.0% |
| AAATGAAAAGGTGATTCTTG+TGG | + | chr8.4:27647003-27647022 | MS.gene28543:CDS | 30.0% | |
| AAGCATTATGTTCTTGTACA+TGG | + | chr8.4:27646803-27646822 | MS.gene28543:CDS | 30.0% | |
| AATGAAAAGGTGATTCTTGT+GGG | + | chr8.4:27647004-27647023 | MS.gene28543:CDS | 30.0% | |
| AATGGAACAATTTCCAGAAA+AGG | + | chr8.4:27647060-27647079 | MS.gene28543:CDS | 30.0% | |
| AATTGTCACATTTACACTTG+TGG | + | chr8.4:27648448-27648467 | MS.gene28543:intron | 30.0% | |
| AGACACTTAAAAAGATATCG+GGG | + | chr8.4:27647365-27647384 | MS.gene28543:intron | 30.0% | |
| AGAGAATTACATAGTTCTTG+TGG | - | chr8.4:27649126-27649145 | None:intergenic | 30.0% | |
| AGCTTATTGGACAAGAATTT+GGG | - | chr8.4:27648702-27648721 | None:intergenic | 30.0% | |
| ATTGAAGAGATATGGAATTG+AGG | + | chr8.4:27648545-27648564 | MS.gene28543:intron | 30.0% | |
| CAAGATAACTTCTCTAAACA+GGG | + | chr8.4:27648955-27648974 | MS.gene28543:CDS | 30.0% | |
| GAAATTTCAATGGAATTCCA+AGG | - | chr8.4:27649023-27649042 | None:intergenic | 30.0% | |
| GACCACAAATTCAAATTAAG+AGG | - | chr8.4:27648003-27648022 | None:intergenic | 30.0% | |
| TATAGTACTAGTATGAGACA+AGG | - | chr8.4:27648775-27648794 | None:intergenic | 30.0% | |
| TGACTTGAATTCAAGTAAGT+AGG | - | chr8.4:27648328-27648347 | None:intergenic | 30.0% | |
| TGATGTATATGAGATCAAAG+GGG | + | chr8.4:27649074-27649093 | MS.gene28543:CDS | 30.0% | |
| TGCAGTTGACACAAATTAAA+AGG | - | chr8.4:27648185-27648204 | None:intergenic | 30.0% | |
| TTCCATTGAAATTTCAACAC+TGG | + | chr8.4:27649028-27649047 | MS.gene28543:CDS | 30.0% | |
| TTGAAGAGATATGGAATTGA+GGG | + | chr8.4:27648546-27648565 | MS.gene28543:intron | 30.0% | |
| ! | ACAAGAATCACCTTTTCATT+TGG | - | chr8.4:27647004-27647023 | None:intergenic | 30.0% |
| ! | ATCCAGTGTTGAAATTTCAA+TGG | - | chr8.4:27649033-27649052 | None:intergenic | 30.0% |
| ! | ATCTTCAAGTTTCTTCAAGT+TGG | - | chr8.4:27646924-27646943 | None:intergenic | 30.0% |
| ! | ATTCGTTCGAGTTTAAATTC+AGG | + | chr8.4:27647786-27647805 | MS.gene28543:intron | 30.0% |
| ! | TATTTAGCATTTTTGTCGGT+GGG | + | chr8.4:27647419-27647438 | MS.gene28543:intron | 30.0% |
| ! | TCGGTACCATTTTATTGTAA+TGG | - | chr8.4:27647562-27647581 | None:intergenic | 30.0% |
| ! | TTTCTTAACAGCTTTTATGC+CGG | + | chr8.4:27647096-27647115 | MS.gene28543:CDS | 30.0% |
| !! | AGTAATTTTTATTTGGCGCA+CGG | - | chr8.4:27647953-27647972 | None:intergenic | 30.0% |
| !! | GGGGGAAAAGTATATTTTAA+GGG | - | chr8.4:27647493-27647512 | None:intergenic | 30.0% |
| !! | TTGATACTTTTGGAAACGAT+AGG | - | chr8.4:27647695-27647714 | None:intergenic | 30.0% |
| AACTTCTCTAAACAGGGTTA+TGG | + | chr8.4:27648961-27648980 | MS.gene28543:CDS | 35.0% | |
| AATTGGCCAAGACTTTATTG+AGG | + | chr8.4:27648899-27648918 | MS.gene28543:CDS | 35.0% | |
| ACAAACTACTTGGATTTAGC+AGG | + | chr8.4:27648870-27648889 | MS.gene28543:intron | 35.0% | |
| ACACAATGCTTCTTATGTCA+TGG | + | chr8.4:27647126-27647145 | MS.gene28543:CDS | 35.0% | |
| ACTTCTCTAAACAGGGTTAT+GGG | + | chr8.4:27648962-27648981 | MS.gene28543:CDS | 35.0% | |
| AGCTGTTAAGAAAACACCAA+CGG | - | chr8.4:27647089-27647108 | None:intergenic | 35.0% | |
| AGTAGGACTATTGAGGTTTA+TGG | - | chr8.4:27648311-27648330 | None:intergenic | 35.0% | |
| AGTCAAGTCTTCCATAAAGA+GGG | - | chr8.4:27648932-27648951 | None:intergenic | 35.0% | |
| ATTCTTGATCTTTCAGCTTC+TGG | + | chr8.4:27646896-27646915 | MS.gene28543:CDS | 35.0% | |
| ATTGCAATCTTCATTGACGT+TGG | - | chr8.4:27648090-27648109 | None:intergenic | 35.0% | |
| ATTGTTTGCAATGAAGACCT+TGG | + | chr8.4:27649003-27649022 | MS.gene28543:CDS | 35.0% | |
| CACAATTCCACCAAATGAAA+AGG | + | chr8.4:27646991-27647010 | MS.gene28543:CDS | 35.0% | |
| GAGATATCATACTCTCTACT+TGG | + | chr8.4:27647844-27647863 | MS.gene28543:intron | 35.0% | |
| GAGCTTATTGGACAAGAATT+TGG | - | chr8.4:27648703-27648722 | None:intergenic | 35.0% | |
| GATTTAGCAGGATCTTGAAT+TGG | + | chr8.4:27648882-27648901 | MS.gene28543:intron | 35.0% | |
| GCAAGATAACTTCTCTAAAC+AGG | + | chr8.4:27648954-27648973 | MS.gene28543:CDS | 35.0% | |
| GTGCACAAAATTTAATTGCC+AGG | + | chr8.4:27646780-27646799 | MS.gene28543:CDS | 35.0% | |
| TACAAGAACATAATGCTTCC+TGG | - | chr8.4:27646801-27646820 | None:intergenic | 35.0% | |
| TCAAGTAAGTAGGACTATTG+AGG | - | chr8.4:27648318-27648337 | None:intergenic | 35.0% | |
| TGAAAGAAACTGATGCCTAA+AGG | - | chr8.4:27647653-27647672 | None:intergenic | 35.0% | |
| TGAACCATTGTTGAAGCTAA+TGG | + | chr8.4:27646967-27646986 | MS.gene28543:CDS | 35.0% | |
| TGCTTCTTATGTCATGGAAA+AGG | + | chr8.4:27647132-27647151 | MS.gene28543:CDS | 35.0% | |
| TGTTGGATAGCGATAATTCA+AGG | - | chr8.4:27647607-27647626 | None:intergenic | 35.0% | |
| ! | AGAATCACCTTTTCATTTGG+TGG | - | chr8.4:27647001-27647020 | None:intergenic | 35.0% |
| ! | CAATAAAATGGTACCGAAAC+TGG | + | chr8.4:27647565-27647584 | MS.gene28543:intron | 35.0% |
| ! | CATAGATGTGATTTGTGTTC+TGG | - | chr8.4:27648151-27648170 | None:intergenic | 35.0% |
| ! | CATCATTAATCCCAGCATTT+TGG | - | chr8.4:27649059-27649078 | None:intergenic | 35.0% |
| ! | CTATTTAGCATTTTTGTCGG+TGG | + | chr8.4:27647418-27647437 | MS.gene28543:intron | 35.0% |
| ! | TTGCAAACAATAAAAGCACG+TGG | - | chr8.4:27648994-27649013 | None:intergenic | 35.0% |
| !! | CTTTTCATTTGGTGGAATTG+TGG | - | chr8.4:27646993-27647012 | None:intergenic | 35.0% |
| !! | GGGGGGAAAAGTATATTTTA+AGG | - | chr8.4:27647494-27647513 | None:intergenic | 35.0% |
| !! | TTTTGGAAACGATAGGTAAG+TGG | - | chr8.4:27647688-27647707 | None:intergenic | 35.0% |
| !!! | TTGATGTTTTGTTTCCACAC+TGG | - | chr8.4:27648668-27648687 | None:intergenic | 35.0% |
| ACTGGATGATCCAAAATGCT+GGG | + | chr8.4:27649046-27649065 | MS.gene28543:CDS | 40.0% | |
| ACTTAGCATAGCTCTTGCAA+TGG | + | chr8.4:27647042-27647061 | MS.gene28543:CDS | 40.0% | |
| GAGTCAAGTCTTCCATAAAG+AGG | - | chr8.4:27648933-27648952 | None:intergenic | 40.0% | |
| GTGGAGTAACACACATTTGT+TGG | - | chr8.4:27647624-27647643 | None:intergenic | 40.0% | |
| TTAACGTGTAGTTACCTCAG+TGG | - | chr8.4:27648739-27648758 | None:intergenic | 40.0% | |
| TTACTCCACAGTTCACCTTT+AGG | + | chr8.4:27647635-27647654 | MS.gene28543:intron | 40.0% | |
| ! | TTTAGAATCTGCTGGTCATG+TGG | + | chr8.4:27646868-27646887 | MS.gene28543:CDS | 40.0% |
| !! | GAAGCATTGTGTTGAATGTC+CGG | - | chr8.4:27647118-27647137 | None:intergenic | 40.0% |
| !! | GGAGTGTTGATAGAGCTTAT+TGG | - | chr8.4:27648715-27648734 | None:intergenic | 40.0% |
| !!! | ATGGTTTTTTCGAACCTTGC+AGG | - | chr8.4:27648292-27648311 | None:intergenic | 40.0% |
| ATTCTTGTGGGTCACAGTCT+TGG | + | chr8.4:27647016-27647035 | MS.gene28543:CDS | 45.0% | |
| CACTGGATGATCCAAAATGC+TGG | + | chr8.4:27649045-27649064 | MS.gene28543:CDS | 45.0% | |
| CCAAGACTTTATTGAGGCCA+GGG | + | chr8.4:27648905-27648924 | MS.gene28543:CDS | 45.0% | |
| GATCAAAGGGGCAGATCATA+TGG | + | chr8.4:27649086-27649105 | MS.gene28543:CDS | 45.0% | |
| GGAAACGATAGGTAAGTGGA+GGG | - | chr8.4:27647684-27647703 | None:intergenic | 45.0% | |
| TGACCAGCAGATTCTAAACG+TGG | - | chr8.4:27646866-27646885 | None:intergenic | 45.0% | |
| TGATGCCTAAAGGTGAACTG+TGG | - | chr8.4:27647643-27647662 | None:intergenic | 45.0% | |
| TGGAAACGATAGGTAAGTGG+AGG | - | chr8.4:27647685-27647704 | None:intergenic | 45.0% | |
| TTTCCAGAAAAGGTTGCCGT+TGG | + | chr8.4:27647070-27647089 | MS.gene28543:CDS | 45.0% | |
| ! | AAGCCACGTTTAGAATCTGC+TGG | + | chr8.4:27646860-27646879 | MS.gene28543:CDS | 45.0% |
| ! | GTGGCCATTAGCTTCAACAA+TGG | - | chr8.4:27646974-27646993 | None:intergenic | 45.0% |
| ! | TAGCATTTTTGTCGGTGGGT+TGG | + | chr8.4:27647423-27647442 | MS.gene28543:intron | 45.0% |
| !! | AGCATTTTTGTCGGTGGGTT+GGG | + | chr8.4:27647424-27647443 | MS.gene28543:intron | 45.0% |
| !! | GTATATTGAGAGTACCCCGA+CGG | + | chr8.4:27648617-27648636 | MS.gene28543:intron | 45.0% |
| !!! | AAATTATTCTTTAAAAAAAT+CGG | - | chr8.4:27647315-27647334 | None:intergenic | 5.0% |
| !!! | TAAATTTTGTTATAAAAAAA+TGG | - | chr8.4:27648025-27648044 | None:intergenic | 5.0% |
| ACGTGTAGTTACCTCAGTGG+AGG | - | chr8.4:27648736-27648755 | None:intergenic | 50.0% | |
| CCCTGGCCTCAATAAAGTCT+TGG | - | chr8.4:27648908-27648927 | None:intergenic | 50.0% | |
| CTATCAACACTCCTCCACTG+AGG | + | chr8.4:27648722-27648741 | MS.gene28543:CDS | 50.0% | |
| CTTGTACATGGTGCTTGCCA+TGG | + | chr8.4:27646815-27646834 | MS.gene28543:CDS | 50.0% | |
| GACACTGAATTCTGCCAGTG+TGG | + | chr8.4:27648651-27648670 | MS.gene28543:CDS | 50.0% | |
| GCCAAGACTTTATTGAGGCC+AGG | + | chr8.4:27648904-27648923 | MS.gene28543:CDS | 50.0% | |
| GGAGAAACACATCTCCTGCA+AGG | + | chr8.4:27648275-27648294 | MS.gene28543:intron | 50.0% | |
| TCTTCCATAAAGAGGGACCC+TGG | - | chr8.4:27648925-27648944 | None:intergenic | 50.0% | |
| TGTACCAACTCCAAGCACCA+TGG | - | chr8.4:27646835-27646854 | None:intergenic | 50.0% | |
| ! | ACACCAACGGCAACCTTTTC+TGG | - | chr8.4:27647076-27647095 | None:intergenic | 50.0% |
| !! | TGGTGCTTGGAGTTGGTACA+AGG | + | chr8.4:27646835-27646854 | MS.gene28543:CDS | 50.0% |
| ATGGTGCTTGCCATGGTGCT+TGG | + | chr8.4:27646822-27646841 | MS.gene28543:CDS | 55.0% | |
| CTTGCCATGGTGCTTGGAGT+TGG | + | chr8.4:27646828-27646847 | MS.gene28543:CDS | 55.0% | |
| CTTGTGGGTCACAGTCTTGG+AGG | + | chr8.4:27647019-27647038 | MS.gene28543:CDS | 55.0% | |
| GTGTCCAACCATTCAGCCGT+CGG | - | chr8.4:27648636-27648655 | None:intergenic | 55.0% | |
| TGTCCAACCATTCAGCCGTC+GGG | - | chr8.4:27648635-27648654 | None:intergenic | 55.0% | |
| GAGGCCAGGGTCCCTCTTTA+TGG | + | chr8.4:27648918-27648937 | MS.gene28543:CDS | 60.0% | |
| GTCCAACCATTCAGCCGTCG+GGG | - | chr8.4:27648634-27648653 | None:intergenic | 60.0% | |
| TACCCCGACGGCTGAATGGT+TGG | + | chr8.4:27648629-27648648 | MS.gene28543:CDS | 60.0% | |
| ! | AGAGTACCCCGACGGCTGAA+TGG | + | chr8.4:27648625-27648644 | MS.gene28543:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 27646776 | 27649173 | 27646776 | ID=MS.gene28543 |
| chr8.4 | mRNA | 27646776 | 27649173 | 27646776 | ID=MS.gene28543.t1;Parent=MS.gene28543 |
| chr8.4 | exon | 27646776 | 27647153 | 27646776 | ID=MS.gene28543.t1.exon1;Parent=MS.gene28543.t1 |
| chr8.4 | CDS | 27646776 | 27647153 | 27646776 | ID=cds.MS.gene28543.t1;Parent=MS.gene28543.t1 |
| chr8.4 | exon | 27648618 | 27648743 | 27648618 | ID=MS.gene28543.t1.exon2;Parent=MS.gene28543.t1 |
| chr8.4 | CDS | 27648618 | 27648743 | 27648618 | ID=cds.MS.gene28543.t1;Parent=MS.gene28543.t1 |
| chr8.4 | exon | 27648892 | 27649173 | 27648892 | ID=MS.gene28543.t1.exon3;Parent=MS.gene28543.t1 |
| chr8.4 | CDS | 27648892 | 27649173 | 27648892 | ID=cds.MS.gene28543.t1;Parent=MS.gene28543.t1 |
| Gene Sequence |
| Protein sequence |
