AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87350.t1 MTR_8g079120 95.385 260 12 0 1 260 1 260 0.0 522
MS.gene87350.t1 MTR_8g079120 94.643 168 9 0 1 168 43 210 1.12e-117 335
MS.gene87350.t1 MTR_5g018365 61.905 252 96 0 9 260 10 261 1.24e-115 332
MS.gene87350.t1 MTR_5g018350 58.800 250 103 0 11 260 7 256 7.78e-108 312
MS.gene87350.t1 MTR_5g018300 42.529 261 145 2 5 260 2 262 1.48e-73 225
MS.gene87350.t1 MTR_5g018320 45.136 257 132 4 11 260 5 259 2.98e-72 222
MS.gene87350.t1 MTR_8g007675 43.191 257 137 5 11 260 32 286 2.81e-68 213
MS.gene87350.t1 MTR_3g464040 41.634 257 140 4 10 260 18 270 3.38e-66 207
MS.gene87350.t1 MTR_5g018280 40.310 258 148 3 8 260 5 261 3.36e-65 204
MS.gene87350.t1 MTR_8g008660 42.023 257 139 5 10 260 26 278 5.74e-63 199
MS.gene87350.t1 MTR_8g008505 41.313 259 140 5 10 260 27 281 5.03e-61 194
MS.gene87350.t1 MTR_8g007670 40.385 260 145 5 9 260 5 262 2.59e-60 191
MS.gene87350.t1 MTR_8g008500 38.996 259 150 5 10 260 26 284 7.94e-59 188
MS.gene87350.t1 MTR_8g007670 39.062 256 110 5 9 260 5 218 2.98e-55 177
MS.gene87350.t1 MTR_7g015220 33.333 252 159 3 11 257 124 371 7.47e-37 134
MS.gene87350.t1 MTR_3g005410 33.077 260 158 5 7 257 90 342 2.44e-36 132
MS.gene87350.t1 MTR_5g068100 31.274 259 167 4 8 260 27 280 2.32e-34 125
MS.gene87350.t1 MTR_3g093730 33.197 244 151 5 9 246 34 271 5.33e-34 124
MS.gene87350.t1 MTR_3g093730 31.405 242 113 5 9 246 34 226 5.18e-30 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87350.t1 AT2G23620 54.475 257 113 2 9 261 7 263 4.01e-103 300
MS.gene87350.t1 AT2G23600 53.360 253 114 2 9 257 7 259 5.54e-95 280
MS.gene87350.t1 AT2G23600 53.360 253 114 2 9 257 22 274 6.35e-95 280
MS.gene87350.t1 AT2G23610 52.344 256 118 3 9 260 7 262 1.95e-93 276
MS.gene87350.t1 AT2G23590 48.031 254 127 1 7 260 23 271 1.09e-89 267
MS.gene87350.t1 AT4G37150 48.627 255 126 2 10 260 2 255 2.26e-87 260
MS.gene87350.t1 AT2G23580 49.416 257 125 2 9 260 6 262 2.69e-87 260
MS.gene87350.t1 AT5G10300 49.027 257 125 2 9 261 4 258 1.04e-86 259
MS.gene87350.t1 AT2G23550 48.249 257 128 2 9 260 6 262 4.45e-83 249
MS.gene87350.t1 AT2G23550 48.249 257 128 2 9 260 13 269 5.11e-83 250
MS.gene87350.t1 AT2G23560 45.669 254 136 2 9 260 6 259 1.82e-79 240
MS.gene87350.t1 AT2G23610 46.245 253 93 2 9 260 7 217 3.95e-77 233
MS.gene87350.t1 AT3G50440 43.083 253 140 2 12 260 22 274 3.09e-72 223
MS.gene87350.t1 AT2G23550 44.922 256 109 2 9 260 6 233 2.81e-69 214
MS.gene87350.t1 AT2G23600 52.439 164 74 2 9 168 22 185 5.56e-59 186
MS.gene87350.t1 AT2G23580 48.045 179 85 3 9 182 6 181 6.17e-53 171
MS.gene87350.t1 AT2G23570 47.753 178 89 1 87 260 1 178 2.58e-52 168
MS.gene87350.t1 AT2G23550 47.273 165 82 2 9 168 13 177 2.15e-50 164
MS.gene87350.t1 AT5G10300 47.590 166 81 2 9 170 4 167 1.25e-47 157
MS.gene87350.t1 AT4G37140 54.701 117 53 0 10 126 2 118 2.19e-45 149
MS.gene87350.t1 AT1G33990 32.824 262 163 5 3 257 90 345 7.44e-40 141
MS.gene87350.t1 AT4G09900 33.074 257 156 5 10 257 97 346 1.39e-39 140
MS.gene87350.t1 AT1G26360 32.669 251 164 2 10 257 188 436 2.48e-39 142
MS.gene87350.t1 AT4G37140 59.341 91 37 0 10 100 2 92 3.12e-37 127
MS.gene87350.t1 AT5G58310 33.205 259 156 5 11 257 5 258 3.20e-37 132
MS.gene87350.t1 AT3G29770 34.902 255 151 5 11 257 138 385 3.96e-37 135
MS.gene87350.t1 AT1G69240 31.518 257 161 6 10 257 186 436 1.03e-36 135
MS.gene87350.t1 AT4G16690 31.707 246 153 4 11 249 12 249 2.56e-33 122
MS.gene87350.t1 AT3G10870 30.738 244 157 5 11 246 20 259 6.86e-31 116
MS.gene87350.t1 AT3G29770 40.278 72 43 0 11 82 138 209 1.99e-12 66.2

Find 66 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTAATCCCAGCATTT+TGG 0.157812 8.3:-25127675 None:intergenic
GAGCTTATTGGACAAGAATT+TGG 0.162838 8.3:-25127319 None:intergenic
GAGGCCAGGGTCCCTCTTTA+TGG 0.202954 8.3:+25127537 MS.gene87350:CDS
GTACTTGACCTTTCAGCTTC+TGG 0.250146 8.3:+25124757 MS.gene87350:CDS
GTGCACAAAATTTAATTGTT+AGG 0.296855 8.3:+25124641 MS.gene87350:CDS
AACAAAACATCAATGTTCTT+TGG 0.296879 8.3:+25127294 MS.gene87350:CDS
GCAAGATAACTTCTCTAAAC+AGG 0.300900 8.3:+25127573 MS.gene87350:CDS
AGCTTATTGGACAAGAATTT+GGG 0.339872 8.3:-25127318 None:intergenic
AACTTCTCTAAACAGGGTTA+TGG 0.360676 8.3:+25127580 MS.gene87350:CDS
ATTCTTGTGGGTCACAGTCT+TGG 0.390920 8.3:+25124877 MS.gene87350:CDS
GGAGTGTTGATAGAGCTTAT+TGG 0.392660 8.3:-25127331 None:intergenic
ACTTCTCTAAACAGGGTTAT+GGG 0.399672 8.3:+25127581 MS.gene87350:CDS
AATGGAACAATTTCCAGAAA+AGG 0.417631 8.3:+25124921 MS.gene87350:CDS
ATCCAGTGTTGAAATTTCAA+TGG 0.421026 8.3:-25127649 None:intergenic
GATTTAGCAGGATCTTGAAT+TGG 0.423617 8.3:+25127501 MS.gene87350:intron
TGAACCATTGTTGAAGCTAA+TGG 0.426644 8.3:+25124828 MS.gene87350:CDS
ATCTTCAAGTTTCTTCAAGT+TGG 0.431463 8.3:-25124782 None:intergenic
CTTGTGGGTCACAGTCTTGG+AGG 0.449534 8.3:+25124880 MS.gene87350:CDS
TGCTTCTTATGTCATGGAAA+AGG 0.451368 8.3:+25124993 MS.gene87350:CDS
CACTGGATGATCCAAAATGC+TGG 0.456893 8.3:+25127664 MS.gene87350:CDS
TGTCCAACCATTCAGCCGTC+GGG 0.460887 8.3:-25127251 None:intergenic
ATGGTGCTTGCCATGGTGCT+TGG 0.470545 8.3:+25124683 MS.gene87350:CDS
TTCCATTGAAATTTCAACAC+TGG 0.470781 8.3:+25127647 MS.gene87350:CDS
GCCAAGACTTTATTGAGGCC+AGG 0.472046 8.3:+25127523 MS.gene87350:CDS
CACAATTCCACCAAATGAAA+AGG 0.475812 8.3:+25124852 MS.gene87350:CDS
CTTGCCATGGTGCTTGGAGT+TGG 0.476673 8.3:+25124689 MS.gene87350:CDS
GAAGCATTGTGTTGAATGTC+CGG 0.482394 8.3:-25124976 None:intergenic
CCCTGGCCTCAATAAAGTCT+TGG 0.486588 8.3:-25127524 None:intergenic
ACACAATGCTTCTTATGTCA+TGG 0.491092 8.3:+25124987 MS.gene87350:CDS
AATGAAAAGGTGATTCTTGT+GGG 0.497441 8.3:+25124865 MS.gene87350:CDS
GATCAAAGGGACAGATCATA+TGG 0.497609 8.3:+25127705 MS.gene87350:CDS
CTTGTACATGGTGCTTGCCA+TGG 0.498303 8.3:+25124676 MS.gene87350:CDS
ATGATGTATATGAGATCAAA+GGG 0.505151 8.3:+25127692 MS.gene87350:CDS
TACCCCGACGGCTGAATGGT+TGG 0.505808 8.3:+25127248 MS.gene87350:CDS
AGAGTACCCCGACGGCTGAA+TGG 0.512702 8.3:+25127244 MS.gene87350:CDS
ATTGTTTGCAATGAAGACCT+TGG 0.520269 8.3:+25127622 MS.gene87350:CDS
CCAAGACTTTATTGAGGCCA+GGG 0.522924 8.3:+25127524 MS.gene87350:CDS
GAAATTTCAATGGAATTCCA+AGG 0.525367 8.3:-25127639 None:intergenic
GTGTCCAACCATTCAGCCGT+CGG 0.529692 8.3:-25127252 None:intergenic
AAGCATTATGTTCTTGTACA+TGG 0.531450 8.3:+25124664 MS.gene87350:CDS
AATGATGTATATGAGATCAA+AGG 0.543714 8.3:+25127691 MS.gene87350:CDS
AAATGAAAAGGTGATTCTTG+TGG 0.544198 8.3:+25124864 MS.gene87350:CDS
AGAGAGTTACATAGTTCTTG+TGG 0.547866 8.3:-25127742 None:intergenic
TTTCCAGAAAAGGTTGCCGT+TGG 0.552011 8.3:+25124931 MS.gene87350:CDS
AATTGGCCAAGACTTTATTG+AGG 0.557607 8.3:+25127518 MS.gene87350:CDS
TGGTGCTTGGAGTTGGTACA+AGG 0.561033 8.3:+25124696 MS.gene87350:CDS
GTGGCCATTAGCTTCAACAA+TGG 0.573860 8.3:-25124832 None:intergenic
GAGTCAAGTCTTCCATAAAG+AGG 0.579389 8.3:-25127549 None:intergenic
AGTTGGTTCCAGAAGCTGAA+AGG 0.584796 8.3:-25124765 None:intergenic
AAGCCACGTTTAGAATCTGC+TGG 0.586149 8.3:+25124721 MS.gene87350:CDS
ACTGGATGATCCAAAATGCT+GGG 0.589459 8.3:+25127665 MS.gene87350:CDS
CAAGATAACTTCTCTAAACA+GGG 0.605122 8.3:+25127574 MS.gene87350:CDS
ACTTAGCATAGCTCTTGCAA+TGG 0.605259 8.3:+25124903 MS.gene87350:CDS
AGTCAAGTCTTCCATAAAGA+GGG 0.612508 8.3:-25127548 None:intergenic
TTTAGAATCTGCTGGTCATG+TGG 0.623515 8.3:+25124729 MS.gene87350:CDS
GACACTGAATTCTGCCAGTG+TGG 0.627184 8.3:+25127270 MS.gene87350:CDS
TCTTCCATAAAGAGGGACCC+TGG 0.632528 8.3:-25127541 None:intergenic
GTCCAACCATTCAGCCGTCG+GGG 0.648788 8.3:-25127250 None:intergenic
ACGTGTAGTTACCTCAGTGG+AGG 0.650895 8.3:-25127352 None:intergenic
AGCTGTTAAGAAAACACCAA+CGG 0.651976 8.3:-25124947 None:intergenic
TTAACGTGTAGTTACCTCAG+TGG 0.666283 8.3:-25127355 None:intergenic
TTGCAAACAATAAAAGCACG+TGG 0.692906 8.3:-25127610 None:intergenic
TGTACCAACTCCAAGCACCA+TGG 0.696634 8.3:-25124693 None:intergenic
TGACCAGCAGATTCTAAACG+TGG 0.719220 8.3:-25124724 None:intergenic
GTATATTGAGAGTACCCCGA+CGG 0.725457 8.3:+25127236 MS.gene87350:intron
CTATCAACACTCCTCCACTG+AGG 0.776664 8.3:+25127341 MS.gene87350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAATAAGATTAATAA+TGG - chr8.3:25127202-25127221 None:intergenic 10.0%
!! TACTTCAAAAAATAATATAA+GGG - chr8.3:25125529-25125548 None:intergenic 10.0%
!! TTACTTCAAAAAATAATATA+AGG - chr8.3:25125530-25125549 None:intergenic 10.0%
!! TTATAACAAAATTTAGATTA+GGG + chr8.3:25126671-25126690 MS.gene87350:intron 10.0%
!! TTTATAACAAAATTTAGATT+AGG + chr8.3:25126670-25126689 MS.gene87350:intron 10.0%
!!! AAATACATTTTATTCATTTA+TGG - chr8.3:25126517-25126536 None:intergenic 10.0%
!!! CATAATAAGTAATTTTTATT+TGG - chr8.3:25126601-25126620 None:intergenic 10.0%
!! ACATATAATAAAACATGAAA+AGG - chr8.3:25126156-25126175 None:intergenic 15.0%
!! ACTAATAAAAACAAAATACT+TGG + chr8.3:25127479-25127498 MS.gene87350:intron 15.0%
!! ATACATTTAGTATACAAAAT+TGG - chr8.3:25125917-25125936 None:intergenic 15.0%
!! ATATAATAAAACATGAAAAG+GGG - chr8.3:25126154-25126173 None:intergenic 15.0%
!! CATATAATAAAACATGAAAA+GGG - chr8.3:25126155-25126174 None:intergenic 15.0%
!! CCTATATTTATAAAAACAAA+TGG - chr8.3:25126858-25126877 None:intergenic 15.0%
!! GAAAATAAATTAAAAAGTTG+TGG - chr8.3:25125335-25125354 None:intergenic 15.0%
!!! CCATTTGTTTTTATAAATAT+AGG + chr8.3:25126855-25126874 MS.gene87350:intron 15.0%
!!! TAGTTTTTATGAAATTTTGT+AGG + chr8.3:25125119-25125138 MS.gene87350:intron 15.0%
!! ATTTGTCCTTTACAATAAAA+TGG + chr8.3:25126194-25126213 MS.gene87350:intron 20.0%
!! TATAATAAAACATGAAAAGG+GGG - chr8.3:25126153-25126172 None:intergenic 20.0%
!! TCACAAATATGATTTCTATA+TGG + chr8.3:25125075-25125094 MS.gene87350:intron 20.0%
!! TCATACAAGAAAAATAGATT+AGG + chr8.3:25126895-25126914 MS.gene87350:intron 20.0%
!! TGACAATTAAAAAGTAATGA+AGG - chr8.3:25127052-25127071 None:intergenic 20.0%
!!! AATTTTAAAACGACAAGTAA+GGG - chr8.3:25127125-25127144 None:intergenic 20.0%
!!! AGTTAAATTCTTGATACTTT+TGG - chr8.3:25126346-25126365 None:intergenic 20.0%
!!! GAATTTGTAAAATTTTGTCA+TGG + chr8.3:25125642-25125661 MS.gene87350:intron 20.0%
!!! TAACTATTTAGCATTTTTGT+CGG + chr8.3:25126055-25126074 MS.gene87350:intron 20.0%
!!! TTTTTATGAAATTTTGTAGG+TGG + chr8.3:25125122-25125141 MS.gene87350:intron 20.0%
! AAAAATGGAGTGCAATTTAA+CGG + chr8.3:25127455-25127474 MS.gene87350:intron 25.0%
! AAAACAAAACTTTCCAGTTT+CGG - chr8.3:25126222-25126241 None:intergenic 25.0%
! AACAAAACATCAATGTTCTT+TGG + chr8.3:25127294-25127313 MS.gene87350:CDS 25.0%
! AATGATGTATATGAGATCAA+AGG + chr8.3:25127691-25127710 MS.gene87350:CDS 25.0%
! AGAAGAACATGTAATAGAAA+AGG - chr8.3:25126110-25126129 None:intergenic 25.0%
! ATAATAAAACATGAAAAGGG+GGG - chr8.3:25126152-25126171 None:intergenic 25.0%
! ATGATGTATATGAGATCAAA+GGG + chr8.3:25127692-25127711 MS.gene87350:CDS 25.0%
! CATTAATTACTGAAGAGATA+TGG + chr8.3:25127153-25127172 MS.gene87350:intron 25.0%
! CATTTAGTATACAAAATTGG+TGG - chr8.3:25125914-25125933 None:intergenic 25.0%
! GAAATAACATTAATTCAGTG+TGG - chr8.3:25125244-25125263 None:intergenic 25.0%
! GAAGAACATGTAATAGAAAA+GGG - chr8.3:25126109-25126128 None:intergenic 25.0%
! GTGCACAAAATTTAATTGTT+AGG + chr8.3:25124641-25124660 MS.gene87350:CDS 25.0%
! TCAATGGTGATATTTATTGT+GGG - chr8.3:25125463-25125482 None:intergenic 25.0%
! TTGAAGTTTGCATTCAAAAA+TGG + chr8.3:25127440-25127459 MS.gene87350:intron 25.0%
!! TCTAAGACAATTAAGTAAAC+TGG - chr8.3:25127091-25127110 None:intergenic 25.0%
!! TTCCATTTTCTTTTTGTCAA+TGG - chr8.3:25125479-25125498 None:intergenic 25.0%
!! TTCCTCTTAATTTGAATTTG+TGG + chr8.3:25126639-25126658 MS.gene87350:intron 25.0%
!!! GAATTTTAAAACGACAAGTA+AGG - chr8.3:25127126-25127145 None:intergenic 25.0%
AAATGAAAAGGTGATTCTTG+TGG + chr8.3:25124864-25124883 MS.gene87350:CDS 30.0%
AAGCATTATGTTCTTGTACA+TGG + chr8.3:25124664-25124683 MS.gene87350:CDS 30.0%
AATGAAAAGGTGATTCTTGT+GGG + chr8.3:25124865-25124884 MS.gene87350:CDS 30.0%
AATGGAACAATTTCCAGAAA+AGG + chr8.3:25124921-25124940 MS.gene87350:CDS 30.0%
AATTGTCACATTTACACTTG+TGG + chr8.3:25127064-25127083 MS.gene87350:intron 30.0%
ACAAAATACTTGGATTTAGC+AGG + chr8.3:25127489-25127508 MS.gene87350:intron 30.0%
AGCTTATTGGACAAGAATTT+GGG - chr8.3:25127321-25127340 None:intergenic 30.0%
AGGACACTTAAAAAGATATC+GGG + chr8.3:25126004-25126023 MS.gene87350:intron 30.0%
ATCGAGTACTTACATTAGAA+AGG - chr8.3:25125364-25125383 None:intergenic 30.0%
CAAGATAACTTCTCTAAACA+GGG + chr8.3:25127574-25127593 MS.gene87350:CDS 30.0%
CACCATTGACAAAAAGAAAA+TGG + chr8.3:25125474-25125493 MS.gene87350:intron 30.0%
CAGGACACTTAAAAAGATAT+CGG + chr8.3:25126003-25126022 MS.gene87350:intron 30.0%
GAAATTTCAATGGAATTCCA+AGG - chr8.3:25127642-25127661 None:intergenic 30.0%
GACCACAAATTCAAATTAAG+AGG - chr8.3:25126644-25126663 None:intergenic 30.0%
GATTCTCTCAAACTTTACAT+GGG - chr8.3:25126707-25126726 None:intergenic 30.0%
GTAAAAAAACCATGTCTCTA+GGG - chr8.3:25125761-25125780 None:intergenic 30.0%
GTCAATGGTGATATTTATTG+TGG - chr8.3:25125464-25125483 None:intergenic 30.0%
TATAGTACTAGTATGAGACA+AGG - chr8.3:25127394-25127413 None:intergenic 30.0%
TGACATGAGAAAGACATTAA+TGG - chr8.3:25125431-25125450 None:intergenic 30.0%
TGACTTGAATTCAAGTAAGT+AGG - chr8.3:25126969-25126988 None:intergenic 30.0%
TGATTCTCTCAAACTTTACA+TGG - chr8.3:25126708-25126727 None:intergenic 30.0%
TGCAGTTGACACAAATTAAA+AGG - chr8.3:25126826-25126845 None:intergenic 30.0%
TTCCATTGAAATTTCAACAC+TGG + chr8.3:25127647-25127666 MS.gene87350:CDS 30.0%
TTCTAATGTAAGTACTCGAT+AGG + chr8.3:25125364-25125383 MS.gene87350:intron 30.0%
! AAAATTTTGTCATGGAACGA+AGG + chr8.3:25125650-25125669 MS.gene87350:intron 30.0%
! AAATATTTACAGAGTGTCTC+AGG + chr8.3:25125984-25126003 MS.gene87350:intron 30.0%
! ACAAGAATCACCTTTTCATT+TGG - chr8.3:25124865-25124884 None:intergenic 30.0%
! ATCCAGTGTTGAAATTTCAA+TGG - chr8.3:25127652-25127671 None:intergenic 30.0%
! ATCTTCAAGTTTCTTCAAGT+TGG - chr8.3:25124785-25124804 None:intergenic 30.0%
! ATTCGTTCGAGTTTAAATTC+AGG + chr8.3:25126427-25126446 MS.gene87350:intron 30.0%
! TATTTAGCATTTTTGTCGGT+GGG + chr8.3:25126059-25126078 MS.gene87350:intron 30.0%
! TCAATTTTTAACCCAGACAA+TGG + chr8.3:25125718-25125737 MS.gene87350:intron 30.0%
! TCGGTACCATTTTATTGTAA+AGG - chr8.3:25126203-25126222 None:intergenic 30.0%
! TTTCTTAACAGCTTTTATGC+CGG + chr8.3:25124957-25124976 MS.gene87350:CDS 30.0%
!! AAATTTTGTAGGTGGATTCT+AGG + chr8.3:25125130-25125149 MS.gene87350:intron 30.0%
!! AATCTAACTGTTAAGTTGAG+TGG - chr8.3:25125188-25125207 None:intergenic 30.0%
!! AATTTTGTAGGTGGATTCTA+GGG + chr8.3:25125131-25125150 MS.gene87350:intron 30.0%
!! GGGGGAAAAGTATATTTTAA+GGG - chr8.3:25126134-25126153 None:intergenic 30.0%
!! TTGATACTTTTGGAAACGAT+AGG - chr8.3:25126336-25126355 None:intergenic 30.0%
AACTTCTCTAAACAGGGTTA+TGG + chr8.3:25127580-25127599 MS.gene87350:CDS 35.0%
AAGACTTATGCGATCTCATT+AGG + chr8.3:25125212-25125231 MS.gene87350:intron 35.0%
AATTGGCCAAGACTTTATTG+AGG + chr8.3:25127518-25127537 MS.gene87350:CDS 35.0%
ACACAATGCTTCTTATGTCA+TGG + chr8.3:25124987-25125006 MS.gene87350:CDS 35.0%
ACTGAAGAGATATGGAATTG+AGG + chr8.3:25127161-25127180 MS.gene87350:intron 35.0%
ACTTCTCTAAACAGGGTTAT+GGG + chr8.3:25127581-25127600 MS.gene87350:CDS 35.0%
AGAGAGTTACATAGTTCTTG+TGG - chr8.3:25127745-25127764 None:intergenic 35.0%
AGCTGTTAAGAAAACACCAA+CGG - chr8.3:25124950-25124969 None:intergenic 35.0%
AGTAGGACTATTGAGGTTTA+TGG - chr8.3:25126952-25126971 None:intergenic 35.0%
AGTCAAGTCTTCCATAAAGA+GGG - chr8.3:25127551-25127570 None:intergenic 35.0%
ATACAAAATTGGTGGAGTCT+AGG - chr8.3:25125906-25125925 None:intergenic 35.0%
ATTGCAATCTTCATTGACGT+TGG - chr8.3:25126731-25126750 None:intergenic 35.0%
ATTGTTTGCAATGAAGACCT+TGG + chr8.3:25127622-25127641 MS.gene87350:CDS 35.0%
ATTTCACCATCGAAGCATAA+TGG + chr8.3:25125609-25125628 MS.gene87350:intron 35.0%
CACAATTCCACCAAATGAAA+AGG + chr8.3:25124852-25124871 MS.gene87350:CDS 35.0%
CATGAGAAAGACATTAATGG+AGG - chr8.3:25125428-25125447 None:intergenic 35.0%
CTGAAGAGATATGGAATTGA+GGG + chr8.3:25127162-25127181 MS.gene87350:intron 35.0%
GAGATATCATACTCTCTACT+TGG + chr8.3:25126485-25126504 MS.gene87350:intron 35.0%
GAGCTTATTGGACAAGAATT+TGG - chr8.3:25127322-25127341 None:intergenic 35.0%
GATTTAGCAGGATCTTGAAT+TGG + chr8.3:25127501-25127520 MS.gene87350:intron 35.0%
GCAAGATAACTTCTCTAAAC+AGG + chr8.3:25127573-25127592 MS.gene87350:CDS 35.0%
GGACACTTAAAAAGATATCG+GGG + chr8.3:25126005-25126024 MS.gene87350:intron 35.0%
GGTAAAAAAACCATGTCTCT+AGG - chr8.3:25125762-25125781 None:intergenic 35.0%
GTGGAGTAATACACATTTGT+TGG - chr8.3:25126265-25126284 None:intergenic 35.0%
TACAAAATTGGTGGAGTCTA+GGG - chr8.3:25125905-25125924 None:intergenic 35.0%
TATTTCCACAACCATTGTCT+GGG - chr8.3:25125732-25125751 None:intergenic 35.0%
TCAAGTAAGTAGGACTATTG+AGG - chr8.3:25126959-25126978 None:intergenic 35.0%
TGAAAGAAACTGATGCCTAA+AGG - chr8.3:25126294-25126313 None:intergenic 35.0%
TGAACCATTGTTGAAGCTAA+TGG + chr8.3:25124828-25124847 MS.gene87350:CDS 35.0%
TGAATTTCCATTTGTGTGGA+TGG + chr8.3:25125675-25125694 MS.gene87350:intron 35.0%
TGCTTCTTATGTCATGGAAA+AGG + chr8.3:25124993-25125012 MS.gene87350:CDS 35.0%
TGTTGGATAGCGATAATTCA+TGG - chr8.3:25126248-25126267 None:intergenic 35.0%
TTATTTCCACAACCATTGTC+TGG - chr8.3:25125733-25125752 None:intergenic 35.0%
TTTCACCATCGAAGCATAAT+GGG + chr8.3:25125610-25125629 MS.gene87350:intron 35.0%
! AGAATCACCTTTTCATTTGG+TGG - chr8.3:25124862-25124881 None:intergenic 35.0%
! CAATAAAATGGTACCGAAAC+TGG + chr8.3:25126206-25126225 MS.gene87350:intron 35.0%
! CATAGATGTGATTTGTGTTC+TGG - chr8.3:25126792-25126811 None:intergenic 35.0%
! CATCATTAATCCCAGCATTT+TGG - chr8.3:25127678-25127697 None:intergenic 35.0%
! CTATTTAGCATTTTTGTCGG+TGG + chr8.3:25126058-25126077 MS.gene87350:intron 35.0%
! GAAGCATAATGGGAAAAATC+TGG + chr8.3:25125620-25125639 MS.gene87350:intron 35.0%
! TTGCAAACAATAAAAGCACG+TGG - chr8.3:25127613-25127632 None:intergenic 35.0%
! TTTTTCCCATTATGCTTCGA+TGG - chr8.3:25125618-25125637 None:intergenic 35.0%
!! CTTTTCATTTGGTGGAATTG+TGG - chr8.3:25124854-25124873 None:intergenic 35.0%
!! GGGGGGAAAAGTATATTTTA+AGG - chr8.3:25126135-25126154 None:intergenic 35.0%
!! TTTTGGAAACGATAGGTAAG+TGG - chr8.3:25126329-25126348 None:intergenic 35.0%
!!! ACATGGTTTTTTTACCAGTG+AGG + chr8.3:25125766-25125785 MS.gene87350:intron 35.0%
!!! CATGGTTTTTTTACCAGTGA+GGG + chr8.3:25125767-25125786 MS.gene87350:intron 35.0%
!!! TTGATGTTTTGTTTCCACAC+TGG - chr8.3:25127287-25127306 None:intergenic 35.0%
ACTGGATGATCCAAAATGCT+GGG + chr8.3:25127665-25127684 MS.gene87350:CDS 40.0%
ACTTAGCATAGCTCTTGCAA+TGG + chr8.3:25124903-25124922 MS.gene87350:CDS 40.0%
CGTGCTTGATATTGAAGATG+CGG + chr8.3:25125579-25125598 MS.gene87350:intron 40.0%
CTTCAATATCAAGCACGCAA+TGG - chr8.3:25125576-25125595 None:intergenic 40.0%
GAGTCAAGTCTTCCATAAAG+AGG - chr8.3:25127552-25127571 None:intergenic 40.0%
GATCAAAGGGACAGATCATA+TGG + chr8.3:25127705-25127724 MS.gene87350:CDS 40.0%
GGACTGAATTTCCATTTGTG+TGG + chr8.3:25125671-25125690 MS.gene87350:intron 40.0%
TTAACGTGTAGTTACCTCAG+TGG - chr8.3:25127358-25127377 None:intergenic 40.0%
TTACTCCACAGTTCACCTTT+AGG + chr8.3:25126276-25126295 MS.gene87350:intron 40.0%
TTTAACCCAGACAATGGTTG+TGG + chr8.3:25125724-25125743 MS.gene87350:intron 40.0%
! TCAGTGTTTCTGAGTATTCG+CGG - chr8.3:25125293-25125312 None:intergenic 40.0%
! TTTAGAATCTGCTGGTCATG+TGG + chr8.3:25124729-25124748 MS.gene87350:CDS 40.0%
!! GAAGCATTGTGTTGAATGTC+CGG - chr8.3:25124979-25124998 None:intergenic 40.0%
!! GGAGTGTTGATAGAGCTTAT+TGG - chr8.3:25127334-25127353 None:intergenic 40.0%
!!! ATGGTTTTTTCGAACCTTGC+AGG - chr8.3:25126933-25126952 None:intergenic 40.0%
ATAACCTGACCCTAGAGACA+TGG + chr8.3:25125749-25125768 MS.gene87350:intron 45.0%
ATTCTTGTGGGTCACAGTCT+TGG + chr8.3:25124877-25124896 MS.gene87350:CDS 45.0%
CACTGGATGATCCAAAATGC+TGG + chr8.3:25127664-25127683 MS.gene87350:CDS 45.0%
CCAAGACTTTATTGAGGCCA+GGG + chr8.3:25127524-25127543 MS.gene87350:CDS 45.0%
GTACTTGACCTTTCAGCTTC+TGG + chr8.3:25124757-25124776 MS.gene87350:CDS 45.0%
TCTATTAAGTCCCTCACTGG+TGG + chr8.3:25125161-25125180 MS.gene87350:intron 45.0%
TGACCAGCAGATTCTAAACG+TGG - chr8.3:25124727-25124746 None:intergenic 45.0%
TGATGCCTAAAGGTGAACTG+TGG - chr8.3:25126284-25126303 None:intergenic 45.0%
TGGTTGTGATCCAGTGTAGA+CGG + chr8.3:25125797-25125816 MS.gene87350:intron 45.0%
TTACCAGTGAGGGAAGAAGA+TGG + chr8.3:25125777-25125796 MS.gene87350:intron 45.0%
TTGTTGTACACCGTCTACAC+TGG - chr8.3:25125810-25125829 None:intergenic 45.0%
TTTCCAGAAAAGGTTGCCGT+TGG + chr8.3:25124931-25124950 MS.gene87350:CDS 45.0%
! AAGCCACGTTTAGAATCTGC+TGG + chr8.3:25124721-25124740 MS.gene87350:CDS 45.0%
! AGTTGGTTCCAGAAGCTGAA+AGG - chr8.3:25124768-25124787 None:intergenic 45.0%
! GTGGCCATTAGCTTCAACAA+TGG - chr8.3:25124835-25124854 None:intergenic 45.0%
!! AAAACCATGTCTCTAGGGTC+AGG - chr8.3:25125756-25125775 None:intergenic 45.0%
!! AGCATTTTTGTCGGTGGGTT+AGG + chr8.3:25126064-25126083 MS.gene87350:intron 45.0%
!! GTATATTGAGAGTACCCCGA+CGG + chr8.3:25127236-25127255 MS.gene87350:intron 45.0%
!!! AAATTATTCTTTAAAAAAAT+CGG - chr8.3:25125955-25125974 None:intergenic 5.0%
!!! TAAATTTTGTTATAAAAAAA+TGG - chr8.3:25126666-25126685 None:intergenic 5.0%
ACGTGTAGTTACCTCAGTGG+AGG - chr8.3:25127355-25127374 None:intergenic 50.0%
CAACCATCTTCTTCCCTCAC+TGG - chr8.3:25125783-25125802 None:intergenic 50.0%
CACTCGTCCATCCACACAAA+TGG - chr8.3:25125685-25125704 None:intergenic 50.0%
CCCTGGCCTCAATAAAGTCT+TGG - chr8.3:25127527-25127546 None:intergenic 50.0%
CTATCAACACTCCTCCACTG+AGG + chr8.3:25127341-25127360 MS.gene87350:CDS 50.0%
CTTGTACATGGTGCTTGCCA+TGG + chr8.3:25124676-25124695 MS.gene87350:CDS 50.0%
GACACTGAATTCTGCCAGTG+TGG + chr8.3:25127270-25127289 MS.gene87350:CDS 50.0%
GCCAAGACTTTATTGAGGCC+AGG + chr8.3:25127523-25127542 MS.gene87350:CDS 50.0%
GCCTCTTAATAGTGCTCCAC+CGG + chr8.3:25125856-25125875 MS.gene87350:intron 50.0%
GGAGAAACACATCTCCTGCA+AGG + chr8.3:25126916-25126935 MS.gene87350:intron 50.0%
GGCTCTATTAAGTCCCTCAC+TGG + chr8.3:25125158-25125177 MS.gene87350:intron 50.0%
GGTCCAATTAAGTCCCTCAC+CGG - chr8.3:25125878-25125897 None:intergenic 50.0%
TAATAGTGCTCCACCGGTGA+GGG + chr8.3:25125862-25125881 MS.gene87350:intron 50.0%
TCTTCCATAAAGAGGGACCC+TGG - chr8.3:25127544-25127563 None:intergenic 50.0%
TGTACCAACTCCAAGCACCA+TGG - chr8.3:25124696-25124715 None:intergenic 50.0%
TTAATAGTGCTCCACCGGTG+AGG + chr8.3:25125861-25125880 MS.gene87350:intron 50.0%
! AATTGGTGGAGTCTAGGGTG+AGG - chr8.3:25125900-25125919 None:intergenic 50.0%
! ACACCAACGGCAACCTTTTC+TGG - chr8.3:25124937-25124956 None:intergenic 50.0%
! ACCGGTGGAGCACTATTAAG+AGG - chr8.3:25125860-25125879 None:intergenic 50.0%
! ATTGGTGGAGTCTAGGGTGA+GGG - chr8.3:25125899-25125918 None:intergenic 50.0%
! GTGTTTCTGAGTATTCGCGG+TGG - chr8.3:25125290-25125309 None:intergenic 50.0%
!! GTAGGTGGATTCTAGGGTGA+GGG + chr8.3:25125137-25125156 MS.gene87350:intron 50.0%
!! TGGTGCTTGGAGTTGGTACA+AGG + chr8.3:25124696-25124715 MS.gene87350:CDS 50.0%
!! TGTAGGTGGATTCTAGGGTG+AGG + chr8.3:25125136-25125155 MS.gene87350:intron 50.0%
AGTTGAGTGGTCCACCAGTG+AGG - chr8.3:25125175-25125194 None:intergenic 55.0%
ATGGTGCTTGCCATGGTGCT+TGG + chr8.3:25124683-25124702 MS.gene87350:CDS 55.0%
CCAATTAAGTCCCTCACCGG+TGG - chr8.3:25125875-25125894 None:intergenic 55.0%
CCACCGGTGAGGGACTTAAT+TGG + chr8.3:25125872-25125891 MS.gene87350:intron 55.0%
CTTGCCATGGTGCTTGGAGT+TGG + chr8.3:25124689-25124708 MS.gene87350:CDS 55.0%
CTTGTGGGTCACAGTCTTGG+AGG + chr8.3:25124880-25124899 MS.gene87350:CDS 55.0%
GTGTCCAACCATTCAGCCGT+CGG - chr8.3:25127255-25127274 None:intergenic 55.0%
GTTGAGTGGTCCACCAGTGA+GGG - chr8.3:25125174-25125193 None:intergenic 55.0%
TGTCCAACCATTCAGCCGTC+GGG - chr8.3:25127254-25127273 None:intergenic 55.0%
CGCGGTGGAGAGAGTGAGAT+TGG - chr8.3:25125275-25125294 None:intergenic 60.0%
GAGGCCAGGGTCCCTCTTTA+TGG + chr8.3:25127537-25127556 MS.gene87350:CDS 60.0%
GTCCAACCATTCAGCCGTCG+GGG - chr8.3:25127253-25127272 None:intergenic 60.0%
TACCCCGACGGCTGAATGGT+TGG + chr8.3:25127248-25127267 MS.gene87350:CDS 60.0%
! AGAGTACCCCGACGGCTGAA+TGG + chr8.3:25127244-25127263 MS.gene87350:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 25124637 25127792 25124637 ID=MS.gene87350
chr8.3 mRNA 25124637 25127792 25124637 ID=MS.gene87350.t1;Parent=MS.gene87350
chr8.3 exon 25124637 25125014 25124637 ID=MS.gene87350.t1.exon1;Parent=MS.gene87350.t1
chr8.3 CDS 25124637 25125014 25124637 ID=cds.MS.gene87350.t1;Parent=MS.gene87350.t1
chr8.3 exon 25127237 25127362 25127237 ID=MS.gene87350.t1.exon2;Parent=MS.gene87350.t1
chr8.3 CDS 25127237 25127362 25127237 ID=cds.MS.gene87350.t1;Parent=MS.gene87350.t1
chr8.3 exon 25127511 25127792 25127511 ID=MS.gene87350.t1.exon3;Parent=MS.gene87350.t1
chr8.3 CDS 25127511 25127792 25127511 ID=cds.MS.gene87350.t1;Parent=MS.gene87350.t1
Gene Sequence

>MS.gene87350

ATGAGTGCACAAAATTTAATTGTTAGGAAGCATTATGTTCTTGTACATGGTGCTTGCCATGGTGCTTGGAGTTGGTACAAGGTCAAGCCACGTTTAGAATCTGCTGGTCATGTGGTCACAGTACTTGACCTTTCAGCTTCTGGAACCAACTTGAAGAAACTTGAAGATGTTGATACAATTTCAGAATACTCTGAACCATTGTTGAAGCTAATGGCCACAATTCCACCAAATGAAAAGGTGATTCTTGTGGGTCACAGTCTTGGAGGACTTAGCATAGCTCTTGCAATGGAACAATTTCCAGAAAAGGTTGCCGTTGGTGTTTTCTTAACAGCTTTTATGCCGGACATTCAACACAATGCTTCTTATGTCATGGAAAAGGTTTGTTTCTAAACTTTGACAATATTTTCTAGTTTCATTTCATAAAAAAAAAATTAAAAATCACAAATATGATTTCTATATGGAAAATAACAATTGCATCAGAATAGTTTTTATGAAATTTTGTAGGTGGATTCTAGGGTGAGGGCTCTATTAAGTCCCTCACTGGTGGACCACTCAACTTAACAGTTAGATTAAATAAGACTTATGCGATCTCATTAGGCTTCTACCACACTGAATTAATGTTATTTCATTCTTAGCCAATCTCACTCTCTCCACCGCGAATACTCAGAAACACTGATAAAATATGAAGACACTCACCACAACTTTTTAATTTATTTTCTTTCTACCTTTCTAATGTAAGTACTCGATAGGCTAGAAAAAAAACTGCTAGAACTGTGTTGATATCAAAGCCTCCATTAATGTCTTTCTCATGTCAAGATCTATGCCCACAATAAATATCACCATTGACAAAAAGAAAATGGAAAAGTACAGTTGCAAAGTTTTTTAAATGCCCTTATATTATTTTTTGAAGTAAAAATCTTTTATAACTCAAATTTTCCATTGCGTGCTTGATATTGAAGATGCGGTTTTTCAATTTCACCATCGAAGCATAATGGGAAAAATCTGGAATTTGTAAAATTTTGTCATGGAACGAAGGACTGAATTTCCATTTGTGTGGATGGACGAGTGATTGTGTTTTACATCAATTTTTAACCCAGACAATGGTTGTGGAAATAACCTGACCCTAGAGACATGGTTTTTTTACCAGTGAGGGAAGAAGATGGTTGTGATCCAGTGTAGACGGTGTACAACAAGATGTGTGTAATTTAATTAATCTGATGCCTCTTAATAGTGCTCCACCGGTGAGGGACTTAATTGGACCCTCACCCTAGACTCCACCAATTTTGTATACTAAATGTATTGAAAATTAAAGTATCCGATTTTTTTAAAGAATAATTTTGTAATTTGAAATATTTACAGAGTGTCTCAGGACACTTAAAAAGATATCGGGGTTCAAATTCTGATCATGACATTCGATCTAACTATTTAGCATTTTTGTCGGTGGGTTAGGACTTGTTGACACTTTTTCTCCCTTTTCTATTACATGTTCTTCTGCCCTTAAAATATACTTTTCCCCCCTTTTCATGTTTTATTATATGTTTCTTGTAGTAGTGATTTATTTGTCCTTTACAATAAAATGGTACCGAAACTGGAAAGTTTTGTTTTGCACCATGAATTATCGCTATCCAACAAATGTGTATTACTCCACAGTTCACCTTTAGGCATCAGTTTCTTTCAAAATTACTCTCTCCACTTACCTATCGTTTCCAAAAGTATCAAGAATTTAACTCACTCACGTTATTTTTTTAATAACAGATGTTAATAGTTAGTTTTTATATTAATATTTACTCATTCGTTCGAGTTTAAATTCAGGATCTCAAACTTCTTATCTCTTAATTAAAATCAGTTGAGATATCATACTCTCTACTTGGTCACAACCATAAATGAATAAAATGTATTTACGTATATATTTATAAAAACACATTATTTAAGTCATTCTTCTTTTATATTTTTATCGTGCGCCAAATAAAAATTACTTATTATGATTGTGAGAAAGCAAATATTCCTCTTAATTTGAATTTGTGGTCCATTTTTTTATAACAAAATTTAGATTAGGGTAAACACACTCCCATGTAAAGTTTGAGAGAATCACCAACGTCAATGAAGATTGCAATAAAACTTATGTATAACTTATCAATTGCATAATTTCATACCAGAACACAAATCACATCTATGTGAGTAAAAGACCTTTTAATTTGTGTCAACTGCAATGTGTAATCCATTTGTTTTTATAAATATAGGATTTATTAAGATTTTTTTCATACAAGAAAAATAGATTAGGAGAAACACATCTCCTGCAAGGTTCGAAAAAACCATAAACCTCAATAGTCCTACTTACTTGAATTCAAGTCACAACATATGCACGCAAATAATTAATTCAACATTAATTATTGATATGTTTAAATACATACTCCTTCATTACTTTTTAATTGTCACATTTACACTTGTGGTCCAGTTTACTTAATTGTCTTAGAAAACTTGTGTTCCCTTACTTGTCGTTTTAAAATTCAATTAAACATTAATTACTGAAGAGATATGGAATTGAGGGAGTGATTATCTTCACCATTATTAATCTTATTTTTTGTATAAACTTTTAACAGTATATTGAGAGTACCCCGACGGCTGAATGGTTGGACACTGAATTCTGCCAGTGTGGAAACAAAACATCAATGTTCTTTGGTCCCAAATTCTTGTCCAATAAGCTCTATCAACACTCCTCCACTGAGGTAACTACACGTTAAATTAAAAACAACTCCTTGTCTCATACTAGTACTATATAATTAAACAAATGTCAATCAATTGCTTGAAGTTTGCATTCAAAAATGGAGTGCAATTTAACGGTACTAATAAAAACAAAATACTTGGATTTAGCAGGATCTTGAATTGGCCAAGACTTTATTGAGGCCAGGGTCCCTCTTTATGGAAGACTTGACTCAGCAAGATAACTTCTCTAAACAGGGTTATGGGTCAGTTCCACGTGCTTTTATTGTTTGCAATGAAGACCTTGGAATTCCATTGAAATTTCAACACTGGATGATCCAAAATGCTGGGATTAATGATGTATATGAGATCAAAGGGACAGATCATATGGCTATGATTTGCAAGCCACAAGAACTATGTAACTCTCTCAATCAGATAGCTTTAAAATACTTGTGA

Protein sequence

>MS.gene87350.t1

MSAQNLIVRKHYVLVHGACHGAWSWYKVKPRLESAGHVVTVLDLSASGTNLKKLEDVDTISEYSEPLLKLMATIPPNEKVILVGHSLGGLSIALAMEQFPEKVAVGVFLTAFMPDIQHNASYVMEKYIESTPTAEWLDTEFCQCGNKTSMFFGPKFLSNKLYQHSSTEDLELAKTLLRPGSLFMEDLTQQDNFSKQGYGSVPRAFIVCNEDLGIPLKFQHWMIQNAGINDVYEIKGTDHMAMICKPQELCNSLNQIALKYL