Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041151.t1 | XP_013453511.1 | 96.1 | 256 | 10 | 0 | 1 | 256 | 6 | 261 | 3.60E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041151.t1 | Q9SE93 | 53.1 | 256 | 116 | 1 | 3 | 254 | 8 | 263 | 1.6e-79 | 297.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041151.t1 | A0A072UEL6 | 96.1 | 256 | 10 | 0 | 1 | 256 | 6 | 261 | 2.6e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39389 | MS.gene041151 | PPI |
| MS.gene047689 | MS.gene041151 | PPI |
| MS.gene87350 | MS.gene041151 | PPI |
| MS.gene037828 | MS.gene041151 | PPI |
| MS.gene047685 | MS.gene041151 | PPI |
| MS.gene39712 | MS.gene041151 | PPI |
| MS.gene047686 | MS.gene041151 | PPI |
| MS.gene047684 | MS.gene041151 | PPI |
| MS.gene010408 | MS.gene041151 | PPI |
| MS.gene022655 | MS.gene041151 | PPI |
| MS.gene010412 | MS.gene041151 | PPI |
| MS.gene022654 | MS.gene041151 | PPI |
| MS.gene011884 | MS.gene041151 | PPI |
| MS.gene44962 | MS.gene041151 | PPI |
| MS.gene037826 | MS.gene041151 | PPI |
| MS.gene56982 | MS.gene041151 | PPI |
| MS.gene39710 | MS.gene041151 | PPI |
| MS.gene39388 | MS.gene041151 | PPI |
| MS.gene39709 | MS.gene041151 | PPI |
| MS.gene89919 | MS.gene041151 | PPI |
| MS.gene037829 | MS.gene041151 | PPI |
| MS.gene39713 | MS.gene041151 | PPI |
| MS.gene28543 | MS.gene041151 | PPI |
| MS.gene041145 | MS.gene041151 | PPI |
| MS.gene041144 | MS.gene041151 | PPI |
| MS.gene010409 | MS.gene041151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041151.t1 | MTR_5g018365 | 96.094 | 256 | 10 | 0 | 1 | 256 | 6 | 261 | 0.0 | 509 |
| MS.gene041151.t1 | MTR_5g018350 | 73.828 | 256 | 67 | 0 | 1 | 256 | 1 | 256 | 7.29e-137 | 386 |
| MS.gene041151.t1 | MTR_8g079120 | 63.095 | 252 | 93 | 0 | 5 | 256 | 9 | 260 | 3.14e-117 | 336 |
| MS.gene041151.t1 | MTR_8g079120 | 61.875 | 160 | 61 | 0 | 5 | 164 | 51 | 210 | 7.56e-70 | 214 |
| MS.gene041151.t1 | MTR_8g007675 | 42.023 | 257 | 140 | 5 | 7 | 256 | 32 | 286 | 3.85e-65 | 204 |
| MS.gene041151.t1 | MTR_3g464040 | 41.245 | 257 | 141 | 4 | 6 | 256 | 18 | 270 | 4.60e-64 | 201 |
| MS.gene041151.t1 | MTR_5g018320 | 41.634 | 257 | 141 | 3 | 7 | 256 | 5 | 259 | 1.76e-60 | 192 |
| MS.gene041151.t1 | MTR_5g018300 | 39.382 | 259 | 148 | 3 | 5 | 256 | 6 | 262 | 6.69e-60 | 191 |
| MS.gene041151.t1 | MTR_8g008505 | 39.453 | 256 | 149 | 4 | 6 | 256 | 27 | 281 | 2.75e-57 | 184 |
| MS.gene041151.t1 | MTR_8g007670 | 39.245 | 265 | 149 | 6 | 1 | 256 | 1 | 262 | 1.77e-56 | 182 |
| MS.gene041151.t1 | MTR_8g008660 | 39.453 | 256 | 147 | 4 | 6 | 256 | 26 | 278 | 9.00e-56 | 180 |
| MS.gene041151.t1 | MTR_8g008500 | 40.000 | 260 | 146 | 6 | 6 | 256 | 26 | 284 | 2.48e-55 | 179 |
| MS.gene041151.t1 | MTR_5g018280 | 38.224 | 259 | 150 | 4 | 5 | 256 | 6 | 261 | 2.58e-54 | 176 |
| MS.gene041151.t1 | MTR_8g007670 | 37.692 | 260 | 116 | 6 | 1 | 256 | 1 | 218 | 1.74e-49 | 162 |
| MS.gene041151.t1 | MTR_7g015220 | 34.783 | 253 | 154 | 3 | 7 | 253 | 124 | 371 | 2.15e-37 | 135 |
| MS.gene041151.t1 | MTR_3g005410 | 34.962 | 266 | 149 | 5 | 1 | 253 | 88 | 342 | 1.27e-36 | 132 |
| MS.gene041151.t1 | MTR_5g068100 | 32.075 | 265 | 157 | 6 | 5 | 257 | 28 | 281 | 7.42e-34 | 124 |
| MS.gene041151.t1 | MTR_3g093730 | 31.837 | 245 | 155 | 5 | 4 | 242 | 33 | 271 | 1.01e-32 | 121 |
| MS.gene041151.t1 | MTR_3g093730 | 47.115 | 104 | 55 | 0 | 4 | 107 | 33 | 136 | 8.34e-31 | 115 |
| MS.gene041151.t1 | MTR_1g034410 | 52.778 | 72 | 28 | 1 | 28 | 93 | 39 | 110 | 3.38e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041151.t1 | AT2G23620 | 52.692 | 260 | 115 | 4 | 3 | 256 | 5 | 262 | 1.84e-91 | 271 |
| MS.gene041151.t1 | AT2G23590 | 49.603 | 252 | 122 | 1 | 5 | 256 | 25 | 271 | 2.82e-85 | 256 |
| MS.gene041151.t1 | AT5G10300 | 51.550 | 258 | 119 | 2 | 3 | 256 | 2 | 257 | 1.22e-84 | 253 |
| MS.gene041151.t1 | AT2G23600 | 48.062 | 258 | 130 | 3 | 3 | 256 | 5 | 262 | 1.10e-83 | 251 |
| MS.gene041151.t1 | AT2G23600 | 48.062 | 258 | 130 | 3 | 3 | 256 | 20 | 277 | 1.38e-83 | 251 |
| MS.gene041151.t1 | AT2G23610 | 46.718 | 259 | 134 | 2 | 2 | 256 | 4 | 262 | 6.02e-82 | 247 |
| MS.gene041151.t1 | AT2G23580 | 47.490 | 259 | 131 | 3 | 3 | 256 | 4 | 262 | 3.48e-81 | 245 |
| MS.gene041151.t1 | AT2G23550 | 48.077 | 260 | 130 | 3 | 2 | 256 | 10 | 269 | 8.82e-79 | 239 |
| MS.gene041151.t1 | AT2G23550 | 48.077 | 260 | 130 | 3 | 2 | 256 | 3 | 262 | 1.06e-78 | 239 |
| MS.gene041151.t1 | AT2G23560 | 43.359 | 256 | 143 | 2 | 3 | 256 | 4 | 259 | 3.50e-74 | 227 |
| MS.gene041151.t1 | AT4G37150 | 44.531 | 256 | 135 | 3 | 6 | 256 | 2 | 255 | 6.46e-74 | 226 |
| MS.gene041151.t1 | AT2G23610 | 43.750 | 256 | 101 | 2 | 2 | 256 | 4 | 217 | 8.12e-71 | 217 |
| MS.gene041151.t1 | AT3G50440 | 42.688 | 253 | 141 | 1 | 8 | 256 | 22 | 274 | 3.11e-67 | 210 |
| MS.gene041151.t1 | AT2G23550 | 42.471 | 259 | 117 | 3 | 2 | 256 | 3 | 233 | 4.32e-62 | 195 |
| MS.gene041151.t1 | AT2G23600 | 48.193 | 166 | 82 | 3 | 3 | 164 | 20 | 185 | 8.64e-54 | 172 |
| MS.gene041151.t1 | AT5G10300 | 52.381 | 168 | 74 | 2 | 3 | 166 | 2 | 167 | 1.78e-50 | 164 |
| MS.gene041151.t1 | AT2G23570 | 46.893 | 177 | 90 | 1 | 84 | 256 | 2 | 178 | 3.15e-49 | 160 |
| MS.gene041151.t1 | AT2G23580 | 45.946 | 185 | 92 | 4 | 2 | 181 | 3 | 184 | 1.76e-48 | 159 |
| MS.gene041151.t1 | AT2G23550 | 44.615 | 195 | 95 | 4 | 2 | 191 | 10 | 196 | 4.58e-47 | 155 |
| MS.gene041151.t1 | AT4G09900 | 36.680 | 259 | 148 | 5 | 4 | 253 | 95 | 346 | 4.24e-39 | 139 |
| MS.gene041151.t1 | AT4G37140 | 54.630 | 108 | 49 | 0 | 5 | 112 | 1 | 108 | 4.41e-39 | 133 |
| MS.gene041151.t1 | AT1G33990 | 35.798 | 257 | 149 | 5 | 6 | 253 | 96 | 345 | 3.08e-38 | 137 |
| MS.gene041151.t1 | AT3G29770 | 37.052 | 251 | 153 | 2 | 6 | 253 | 137 | 385 | 4.28e-38 | 137 |
| MS.gene041151.t1 | AT1G69240 | 33.205 | 259 | 165 | 5 | 6 | 259 | 186 | 441 | 6.47e-36 | 133 |
| MS.gene041151.t1 | AT1G26360 | 33.333 | 255 | 157 | 5 | 6 | 253 | 188 | 436 | 1.55e-34 | 129 |
| MS.gene041151.t1 | AT4G37140 | 56.044 | 91 | 40 | 0 | 6 | 96 | 2 | 92 | 2.88e-32 | 114 |
| MS.gene041151.t1 | AT5G58310 | 30.741 | 270 | 162 | 6 | 5 | 258 | 3 | 263 | 5.75e-32 | 118 |
| MS.gene041151.t1 | AT3G10870 | 45.283 | 106 | 58 | 0 | 2 | 107 | 15 | 120 | 2.45e-30 | 114 |
| MS.gene041151.t1 | AT4G16690 | 31.225 | 253 | 157 | 6 | 7 | 251 | 12 | 255 | 1.45e-28 | 109 |
| MS.gene041151.t1 | AT3G29770 | 50.000 | 74 | 37 | 0 | 6 | 79 | 137 | 210 | 5.39e-15 | 73.2 |
Find 46 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCATCAATCCCAGCATTT+TGG | 0.143115 | 5.1:+10525533 | None:intergenic |
| AATTTATCCAAGGAGGGATA+TGG | 0.283211 | 5.1:-10525628 | MS.gene041151:CDS |
| GATGGTTTGTGTTGAGTATC+AGG | 0.310434 | 5.1:+10527105 | None:intergenic |
| ATTGAGAGATACCCGGTTAC+TGG | 0.326715 | 5.1:-10526180 | MS.gene041151:CDS |
| ACAACATACTAGTTAAATTT+CGG | 0.329682 | 5.1:+10525418 | None:intergenic |
| GTTCTTGTTGGACATAGCTT+TGG | 0.363914 | 5.1:-10527204 | MS.gene041151:CDS |
| GTGTCTAACCATCCAGTAAC+CGG | 0.382878 | 5.1:+10526168 | None:intergenic |
| GATGCGGTGAAAGTGATTAA+TGG | 0.393295 | 5.1:-10525517 | MS.gene041151:CDS |
| GAGTATGCTAAGCCTTTGTT+AGG | 0.417352 | 5.1:-10527261 | MS.gene041151:CDS |
| GACTTTGCAGGATTTGGAAT+TGG | 0.421655 | 5.1:-10525707 | MS.gene041151:intron |
| CTTGTTGGACATAGCTTTGG+AGG | 0.435184 | 5.1:-10527201 | MS.gene041151:CDS |
| ACCATCATATGTTCTAGAAC+AGG | 0.465534 | 5.1:-10527088 | MS.gene041151:intron |
| GATTAATGGAGCAGATCATA+TGG | 0.479402 | 5.1:-10525503 | MS.gene041151:CDS |
| AACAAAATGCTGTTGTTACC+TGG | 0.480280 | 5.1:-10526126 | MS.gene041151:CDS |
| CTAGTACATGGTGTTAGCGT+TGG | 0.485280 | 5.1:-10527405 | MS.gene041151:CDS |
| ATGGTGTTAGCGTTGGAGCT+TGG | 0.496712 | 5.1:-10527398 | MS.gene041151:CDS |
| ATTTATCCAAGGAGGGATAT+GGG | 0.510344 | 5.1:-10525627 | MS.gene041151:CDS |
| ACCTGTTCTAGAACATATGA+TGG | 0.511075 | 5.1:+10527087 | None:intergenic |
| CTTTCAACTCTGCTCCATTG+AGG | 0.515282 | 5.1:-10526079 | MS.gene041151:intron |
| AGAGATAAACAAAGTTCTTG+AGG | 0.516394 | 5.1:+10525466 | None:intergenic |
| CAATGGATGATCCAAAATGC+TGG | 0.517637 | 5.1:-10525544 | MS.gene041151:CDS |
| TTAGCGTTGGAGCTTGGAGT+TGG | 0.518739 | 5.1:-10527392 | MS.gene041151:CDS |
| TGATGACTTGGCAATTCCAC+TGG | 0.525862 | 5.1:-10525575 | MS.gene041151:CDS |
| AACCGACCCATATCCCTCCT+TGG | 0.527820 | 5.1:+10525621 | None:intergenic |
| GGCACAATTAAGTACCTCAA+TGG | 0.530565 | 5.1:+10526065 | None:intergenic |
| TATTGTTGCAAATGATGACT+TGG | 0.549585 | 5.1:-10525587 | MS.gene041151:CDS |
| AATGGATGATCCAAAATGCT+GGG | 0.553255 | 5.1:-10525543 | MS.gene041151:CDS |
| GTAGACAAGAACTTTGAGCC+AGG | 0.559075 | 5.1:+10526108 | None:intergenic |
| GCGAAGAATTTATCCAAGGA+GGG | 0.565282 | 5.1:-10525634 | MS.gene041151:CDS |
| TATCAGGAATAAAAGCTGCT+AGG | 0.583140 | 5.1:+10527121 | None:intergenic |
| ATCCAAGGAGGGATATGGGT+CGG | 0.592535 | 5.1:-10525623 | MS.gene041151:CDS |
| AGAGATACCCGGTTACTGGA+TGG | 0.592966 | 5.1:-10526176 | MS.gene041151:CDS |
| AATGAGTATAGCTCTTGCAA+TGG | 0.600234 | 5.1:-10527178 | MS.gene041151:CDS |
| ACACTTGACCTTGCAGCTAG+TGG | 0.615932 | 5.1:-10527324 | MS.gene041151:CDS |
| TGACCTACAGATTCTAACTG+TGG | 0.617711 | 5.1:+10527357 | None:intergenic |
| TGTCTAACCATCCAGTAACC+GGG | 0.625170 | 5.1:+10526169 | None:intergenic |
| ATCCATTGTTCATACTCCAG+TGG | 0.633048 | 5.1:+10525559 | None:intergenic |
| AGCGAAGAATTTATCCAAGG+AGG | 0.642147 | 5.1:-10525635 | MS.gene041151:CDS |
| TGAAGCGAAGAATTTATCCA+AGG | 0.646478 | 5.1:-10525638 | MS.gene041151:CDS |
| TTCCACTGGAGTATGAACAA+TGG | 0.648915 | 5.1:-10525561 | MS.gene041151:CDS |
| TGTTGATGCCACTAGCTGCA+AGG | 0.665739 | 5.1:+10527316 | None:intergenic |
| AAACCACAGTTAGAATCTGT+AGG | 0.674566 | 5.1:-10527360 | MS.gene041151:CDS |
| GAGGCTAAGAAGCCTAACAA+AGG | 0.687792 | 5.1:+10527249 | None:intergenic |
| ATAGTATATTGAGAGATACC+CGG | 0.707415 | 5.1:-10526187 | MS.gene041151:intron |
| CCAAAATGCTGGGATTGATG+CGG | 0.708924 | 5.1:-10525533 | MS.gene041151:CDS |
| TTTGCAACAATACAAGCACG+TGG | 0.741755 | 5.1:+10525598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATCTAATTTATCA+AGG | + | chr5.1:10526590-10526609 | None:intergenic | 10.0% |
| !!! | AATATTTATTAGTTTAGTTA+TGG | - | chr5.1:10526153-10526172 | MS.gene041151:CDS | 10.0% |
| !!! | ATATTTATTAGTTTAGTTAT+GGG | - | chr5.1:10526154-10526173 | MS.gene041151:CDS | 10.0% |
| !!! | TTTTTTTATTGTTTATATTC+TGG | - | chr5.1:10527042-10527061 | MS.gene041151:intron | 10.0% |
| !!! | AATATTGTTAATTTTCTTAG+TGG | - | chr5.1:10525878-10525897 | MS.gene041151:intron | 15.0% |
| !! | ATATAGTGATTATACCTAAA+GGG | + | chr5.1:10526465-10526484 | None:intergenic | 20.0% |
| !! | TATATAGTGATTATACCTAA+AGG | + | chr5.1:10526466-10526485 | None:intergenic | 20.0% |
| !!! | AATTGGTGAAGATTTTAATA+AGG | - | chr5.1:10527168-10527187 | MS.gene041151:CDS | 20.0% |
| !!! | ACACCTTCTAAAAAAATAAA+CGG | + | chr5.1:10526342-10526361 | None:intergenic | 20.0% |
| !!! | TCACTAAAGTCTAAAATATA+TGG | - | chr5.1:10526885-10526904 | MS.gene041151:intron | 20.0% |
| !!! | TGATGATATTTGTTTTAAGT+TGG | - | chr5.1:10526128-10526147 | MS.gene041151:CDS | 20.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | + | chr5.1:10526234-10526253 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr5.1:10526381-10526400 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | - | chr5.1:10526424-10526443 | MS.gene041151:intron | 25.0% |
| ! | CCAAAAATCATATATTGTGA+CGG | - | chr5.1:10527116-10527135 | MS.gene041151:CDS | 25.0% |
| ! | TATAGTGATTATACCTAAAG+GGG | + | chr5.1:10526464-10526483 | None:intergenic | 25.0% |
| ! | TTATCCTAGTTTACATTTGA+TGG | + | chr5.1:10525951-10525970 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATGTAAACT+AGG | - | chr5.1:10525944-10525963 | MS.gene041151:intron | 25.0% |
| ! | TTTCCTGAAAAAATTGAAGT+TGG | - | chr5.1:10525708-10525727 | MS.gene041151:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr5.1:10526276-10526295 | MS.gene041151:intron | 25.0% |
| !! | CACCTTCTAAAAAAATAAAC+GGG | + | chr5.1:10526341-10526360 | None:intergenic | 25.0% |
| !! | CGTCACAATATATGATTTTT+GGG | + | chr5.1:10527118-10527137 | None:intergenic | 25.0% |
| !! | TTTTAGCAATATTCACCTTA+AGG | - | chr5.1:10526363-10526382 | MS.gene041151:intron | 25.0% |
| !!! | ATATTTTAGACTTTAGTGAC+AGG | + | chr5.1:10526884-10526903 | None:intergenic | 25.0% |
| !!! | ATTCCAACTTCAATTTTTTC+AGG | + | chr5.1:10525714-10525733 | None:intergenic | 25.0% |
| !!! | TATTTTAGACTTTAGTGACA+GGG | + | chr5.1:10526883-10526902 | None:intergenic | 25.0% |
| AAAAAAATACGTCAACAGCA+GGG | - | chr5.1:10526037-10526056 | MS.gene041151:intron | 30.0% | |
| AATGAAAAAGTGGTTCTTGT+TGG | - | chr5.1:10525642-10525661 | MS.gene041151:CDS | 30.0% | |
| AATTACGCGATTAGTAAAAC+TGG | - | chr5.1:10526909-10526928 | MS.gene041151:intron | 30.0% | |
| ACTTGATCCAAATGAAAAAG+TGG | - | chr5.1:10525632-10525651 | MS.gene041151:CDS | 30.0% | |
| AGAGATAAACAAAGTTCTTG+AGG | + | chr5.1:10527395-10527414 | None:intergenic | 30.0% | |
| ATAGTATATTGAGAGATACC+CGG | - | chr5.1:10526671-10526690 | MS.gene041151:intron | 30.0% | |
| CACACCTTAATAAAAACTAG+TGG | - | chr5.1:10526423-10526442 | MS.gene041151:intron | 30.0% | |
| GTAAAAACTGCAAAGATAGA+TGG | + | chr5.1:10526817-10526836 | None:intergenic | 30.0% | |
| TAAAAAAATACGTCAACAGC+AGG | - | chr5.1:10526036-10526055 | MS.gene041151:intron | 30.0% | |
| TATTGTTGCAAATGATGACT+TGG | - | chr5.1:10527271-10527290 | MS.gene041151:CDS | 30.0% | |
| ! | AAGCATTTTGTTCTAGTACA+TGG | - | chr5.1:10525441-10525460 | MS.gene041151:CDS | 30.0% |
| ! | ACTTGGATCATTTTGTGATA+TGG | - | chr5.1:10526648-10526667 | MS.gene041151:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr5.1:10526275-10526294 | MS.gene041151:intron | 30.0% |
| ! | CCGTCACAATATATGATTTT+TGG | + | chr5.1:10527119-10527138 | None:intergenic | 30.0% |
| ! | GAACAAAATGCTTCTGTTTT+TGG | + | chr5.1:10525434-10525453 | None:intergenic | 30.0% |
| ! | TTAGACACTGAGTTTTCATT+TGG | - | chr5.1:10526705-10526724 | MS.gene041151:intron | 30.0% |
| ! | TTTTTCATTTGGATCAAGTG+AGG | + | chr5.1:10525631-10525650 | None:intergenic | 30.0% |
| !! | GTGAAGATTTTAATAAGGAC+AGG | - | chr5.1:10527173-10527192 | MS.gene041151:CDS | 30.0% |
| !!! | ACAAGAACCACTTTTTCATT+TGG | + | chr5.1:10525642-10525661 | None:intergenic | 30.0% |
| !!! | ACACCCACTAGTTTTTATTA+AGG | + | chr5.1:10526430-10526449 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr5.1:10526282-10526301 | None:intergenic | 30.0% |
| !!! | CACCCGTTTATTTTTTTAGA+AGG | - | chr5.1:10526336-10526355 | MS.gene041151:intron | 30.0% |
| AAACCACAGTTAGAATCTGT+AGG | - | chr5.1:10525498-10525517 | MS.gene041151:CDS | 35.0% | |
| AACAAAATGCTGTTGTTACC+TGG | - | chr5.1:10526732-10526751 | MS.gene041151:intron | 35.0% | |
| AATGAGTATAGCTCTTGCAA+TGG | - | chr5.1:10525680-10525699 | MS.gene041151:CDS | 35.0% | |
| AATGGATGATCCAAAATGCT+GGG | - | chr5.1:10527315-10527334 | MS.gene041151:CDS | 35.0% | |
| AATTTATCCAAGGAGGGATA+TGG | - | chr5.1:10527230-10527249 | MS.gene041151:CDS | 35.0% | |
| ACAGGGTCTTACATATTTAG+AGG | + | chr5.1:10526866-10526885 | None:intergenic | 35.0% | |
| ACTCTCACATAAAAACCAGT+GGG | + | chr5.1:10526195-10526214 | None:intergenic | 35.0% | |
| AGACAGACTTGAAATCTGTT+GGG | + | chr5.1:10526084-10526103 | None:intergenic | 35.0% | |
| ATCACAAAATGATCCAAGTC+AGG | + | chr5.1:10526647-10526666 | None:intergenic | 35.0% | |
| ATTTATCCAAGGAGGGATAT+GGG | - | chr5.1:10527231-10527250 | MS.gene041151:CDS | 35.0% | |
| GATTAATGGAGCAGATCATA+TGG | - | chr5.1:10527355-10527374 | MS.gene041151:CDS | 35.0% | |
| TATCAGGAATAAAAGCTGCT+AGG | + | chr5.1:10525740-10525759 | None:intergenic | 35.0% | |
| TGAAGCGAAGAATTTATCCA+AGG | - | chr5.1:10527220-10527239 | MS.gene041151:CDS | 35.0% | |
| TGTATGTTAGCAACTCCTAT+AGG | + | chr5.1:10526318-10526337 | None:intergenic | 35.0% | |
| TTTATTTACCTGACCTGACT+TGG | - | chr5.1:10526631-10526650 | MS.gene041151:intron | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | - | chr5.1:10526216-10526235 | MS.gene041151:intron | 35.0% |
| !! | ACCATCATATGTTCTAGAAC+AGG | - | chr5.1:10525770-10525789 | MS.gene041151:intron | 35.0% |
| !! | ACCTGTTCTAGAACATATGA+TGG | + | chr5.1:10525774-10525793 | None:intergenic | 35.0% |
| AAAATGATCCAAGTCAGGTC+AGG | + | chr5.1:10526642-10526661 | None:intergenic | 40.0% | |
| AAATCCTGCAAAGTCCACAA+TGG | + | chr5.1:10527146-10527165 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | chr5.1:10526307-10526326 | None:intergenic | 40.0% | |
| AATCCTGCAAAGTCCACAAT+GGG | + | chr5.1:10527145-10527164 | None:intergenic | 40.0% | |
| AGCGAAGAATTTATCCAAGG+AGG | - | chr5.1:10527223-10527242 | MS.gene041151:CDS | 40.0% | |
| ATCCATTGTTCATACTCCAG+TGG | + | chr5.1:10527302-10527321 | None:intergenic | 40.0% | |
| ATTGTGGACTTTGCAGGATT+TGG | - | chr5.1:10527145-10527164 | MS.gene041151:CDS | 40.0% | |
| CAATGGATGATCCAAAATGC+TGG | - | chr5.1:10527314-10527333 | MS.gene041151:CDS | 40.0% | |
| CACTCTCACATAAAAACCAG+TGG | + | chr5.1:10526196-10526215 | None:intergenic | 40.0% | |
| GAGACAGACTTGAAATCTGT+TGG | + | chr5.1:10526085-10526104 | None:intergenic | 40.0% | |
| GAGTATGCTAAGCCTTTGTT+AGG | - | chr5.1:10525597-10525616 | MS.gene041151:CDS | 40.0% | |
| GATGCGGTGAAAGTGATTAA+TGG | - | chr5.1:10527341-10527360 | MS.gene041151:CDS | 40.0% | |
| GCGAAGAATTTATCCAAGGA+GGG | - | chr5.1:10527224-10527243 | MS.gene041151:CDS | 40.0% | |
| GGCACAATTAAGTACCTCAA+TGG | + | chr5.1:10526796-10526815 | None:intergenic | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr5.1:10526300-10526319 | MS.gene041151:intron | 40.0% | |
| GTTCTTGTTGGACATAGCTT+TGG | - | chr5.1:10525654-10525673 | MS.gene041151:CDS | 40.0% | |
| TCAATATGTCCGAGTGGTTA+AGG | + | chr5.1:10526107-10526126 | None:intergenic | 40.0% | |
| TGACCTACAGATTCTAACTG+TGG | + | chr5.1:10525504-10525523 | None:intergenic | 40.0% | |
| TTCCACTGGAGTATGAACAA+TGG | - | chr5.1:10527297-10527316 | MS.gene041151:CDS | 40.0% | |
| TTTGCAACAATACAAGCACG+TGG | + | chr5.1:10527263-10527282 | None:intergenic | 40.0% | |
| ! | GACACTGAGTTTTCATTTGG+TGG | - | chr5.1:10526708-10526727 | MS.gene041151:intron | 40.0% |
| ! | GACTTTGCAGGATTTGGAAT+TGG | - | chr5.1:10527151-10527170 | MS.gene041151:CDS | 40.0% |
| ! | GATGGTTTGTGTTGAGTATC+AGG | + | chr5.1:10525756-10525775 | None:intergenic | 40.0% |
| ! | TATACCTAAAGGGGTTTGCT+AGG | + | chr5.1:10526455-10526474 | None:intergenic | 40.0% |
| !!! | GACAGGATCACTTTTTCTTG+AGG | - | chr5.1:10527190-10527209 | MS.gene041151:CDS | 40.0% |
| AGTCTGTCTCCTTAACCACT+CGG | - | chr5.1:10526095-10526114 | MS.gene041151:CDS | 45.0% | |
| ATCCTGCAAAGTCCACAATG+GGG | + | chr5.1:10527144-10527163 | None:intergenic | 45.0% | |
| ATTGAGAGATACCCGGTTAC+TGG | - | chr5.1:10526678-10526697 | MS.gene041151:intron | 45.0% | |
| CATCAGTCAATATGTCCGAG+TGG | + | chr5.1:10526113-10526132 | None:intergenic | 45.0% | |
| CCAAAATGCTGGGATTGATG+CGG | - | chr5.1:10527325-10527344 | MS.gene041151:CDS | 45.0% | |
| CTTTCAACTCTGCTCCATTG+AGG | - | chr5.1:10526779-10526798 | MS.gene041151:intron | 45.0% | |
| GAGGCTAAGAAGCCTAACAA+AGG | + | chr5.1:10525612-10525631 | None:intergenic | 45.0% | |
| GTAGACAAGAACTTTGAGCC+AGG | + | chr5.1:10526753-10526772 | None:intergenic | 45.0% | |
| GTATCCTAGCAAACCCCTTT+AGG | - | chr5.1:10526448-10526467 | MS.gene041151:intron | 45.0% | |
| GTGTCTAACCATCCAGTAAC+CGG | + | chr5.1:10526693-10526712 | None:intergenic | 45.0% | |
| TGTCTAACCATCCAGTAACC+GGG | + | chr5.1:10526692-10526711 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGAACACACCCAC+TGG | - | chr5.1:10526177-10526196 | MS.gene041151:CDS | 45.0% |
| ! | CTAGTACATGGTGTTAGCGT+TGG | - | chr5.1:10525453-10525472 | MS.gene041151:CDS | 45.0% |
| ! | TGATGACTTGGCAATTCCAC+TGG | - | chr5.1:10527283-10527302 | MS.gene041151:CDS | 45.0% |
| !! | CTTGTTGGACATAGCTTTGG+AGG | - | chr5.1:10525657-10525676 | MS.gene041151:CDS | 45.0% |
| ACACTTGACCTTGCAGCTAG+TGG | - | chr5.1:10525534-10525553 | MS.gene041151:CDS | 50.0% | |
| AGAGATACCCGGTTACTGGA+TGG | - | chr5.1:10526682-10526701 | MS.gene041151:intron | 50.0% | |
| ATCCAAGGAGGGATATGGGT+CGG | - | chr5.1:10527235-10527254 | MS.gene041151:CDS | 50.0% | |
| TGTTGATGCCACTAGCTGCA+AGG | + | chr5.1:10525545-10525564 | None:intergenic | 50.0% | |
| ! | ATGGTGTTAGCGTTGGAGCT+TGG | - | chr5.1:10525460-10525479 | MS.gene041151:CDS | 50.0% |
| ! | CCGCATCAATCCCAGCATTT+TGG | + | chr5.1:10527328-10527347 | None:intergenic | 50.0% |
| ! | TTAGCGTTGGAGCTTGGAGT+TGG | - | chr5.1:10525466-10525485 | MS.gene041151:CDS | 50.0% |
| AACCGACCCATATCCCTCCT+TGG | + | chr5.1:10527240-10527259 | None:intergenic | 55.0% | |
| ATTGTGACGGTGCCCCATTG+TGG | - | chr5.1:10527129-10527148 | MS.gene041151:CDS | 55.0% | |
| TGCCCCATTGTGGACTTTGC+AGG | - | chr5.1:10527139-10527158 | MS.gene041151:CDS | 55.0% | |
| AGCAGGGTTCGAACCTGCGC+GGG | - | chr5.1:10526053-10526072 | MS.gene041151:intron | 65.0% | |
| CAGCAGGGTTCGAACCTGCG+CGG | - | chr5.1:10526052-10526071 | MS.gene041151:intron | 65.0% | |
| CTGTTGGGCTTCGCCCGCGC+AGG | + | chr5.1:10526069-10526088 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10525426 | 10527454 | 10525426 | ID=MS.gene041151 |
| chr5.1 | mRNA | 10525426 | 10527454 | 10525426 | ID=MS.gene041151.t1;Parent=MS.gene041151 |
| chr5.1 | exon | 10527089 | 10527454 | 10527089 | ID=MS.gene041151.t1.exon1;Parent=MS.gene041151.t1 |
| chr5.1 | CDS | 10527089 | 10527454 | 10527089 | ID=cds.MS.gene041151.t1;Parent=MS.gene041151.t1 |
| chr5.1 | exon | 10526080 | 10526205 | 10526080 | ID=MS.gene041151.t1.exon2;Parent=MS.gene041151.t1 |
| chr5.1 | CDS | 10526080 | 10526205 | 10526080 | ID=cds.MS.gene041151.t1;Parent=MS.gene041151.t1 |
| chr5.1 | exon | 10525426 | 10525719 | 10525426 | ID=MS.gene041151.t1.exon3;Parent=MS.gene041151.t1 |
| chr5.1 | CDS | 10525426 | 10525719 | 10525426 | ID=cds.MS.gene041151.t1;Parent=MS.gene041151.t1 |
| Gene Sequence |
| Protein sequence |
