Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010409.t1 | XP_003611830.1 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 8.50E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010409.t1 | Q6RYA0 | 48.8 | 258 | 127 | 3 | 4 | 259 | 5 | 259 | 3.1e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010409.t1 | G7K9E5 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 6.2e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010409 | MS.gene011884 | PPI |
| MS.gene010409 | MS.gene44962 | PPI |
| MS.gene010409 | MS.gene047689 | PPI |
| MS.gene28543 | MS.gene010409 | PPI |
| MS.gene010409 | MS.gene010412 | PPI |
| MS.gene87350 | MS.gene010409 | PPI |
| MS.gene010409 | MS.gene041151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010409.t1 | MTR_5g018320 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 526 |
| MS.gene010409.t1 | MTR_5g018300 | 87.938 | 257 | 31 | 0 | 4 | 260 | 7 | 263 | 4.72e-173 | 478 |
| MS.gene010409.t1 | MTR_5g018280 | 83.270 | 263 | 40 | 2 | 1 | 260 | 1 | 262 | 1.38e-161 | 448 |
| MS.gene010409.t1 | MTR_8g007675 | 54.297 | 256 | 115 | 2 | 5 | 259 | 32 | 286 | 2.39e-99 | 292 |
| MS.gene010409.t1 | MTR_8g008500 | 53.435 | 262 | 117 | 4 | 2 | 259 | 24 | 284 | 1.90e-93 | 276 |
| MS.gene010409.t1 | MTR_8g008505 | 50.769 | 260 | 125 | 3 | 1 | 259 | 24 | 281 | 2.46e-90 | 269 |
| MS.gene010409.t1 | MTR_3g464040 | 49.615 | 260 | 126 | 3 | 1 | 259 | 15 | 270 | 3.71e-88 | 263 |
| MS.gene010409.t1 | MTR_8g008660 | 49.421 | 259 | 126 | 3 | 2 | 259 | 24 | 278 | 4.00e-88 | 263 |
| MS.gene010409.t1 | MTR_8g007670 | 46.124 | 258 | 136 | 3 | 4 | 259 | 6 | 262 | 3.15e-80 | 242 |
| MS.gene010409.t1 | MTR_8g079120 | 45.736 | 258 | 131 | 4 | 4 | 259 | 10 | 260 | 9.88e-74 | 226 |
| MS.gene010409.t1 | MTR_8g007670 | 40.310 | 258 | 107 | 3 | 4 | 259 | 6 | 218 | 4.14e-64 | 200 |
| MS.gene010409.t1 | MTR_5g018350 | 41.085 | 258 | 141 | 4 | 5 | 259 | 7 | 256 | 3.29e-63 | 199 |
| MS.gene010409.t1 | MTR_5g018365 | 41.085 | 258 | 143 | 3 | 4 | 259 | 11 | 261 | 8.43e-59 | 188 |
| MS.gene010409.t1 | MTR_7g015220 | 40.234 | 256 | 149 | 2 | 1 | 256 | 120 | 371 | 1.21e-55 | 183 |
| MS.gene010409.t1 | MTR_8g079120 | 48.171 | 164 | 78 | 3 | 4 | 165 | 52 | 210 | 2.54e-50 | 164 |
| MS.gene010409.t1 | MTR_3g005410 | 35.878 | 262 | 153 | 4 | 1 | 256 | 90 | 342 | 2.23e-48 | 163 |
| MS.gene010409.t1 | MTR_5g068100 | 37.109 | 256 | 157 | 1 | 4 | 259 | 29 | 280 | 1.13e-46 | 157 |
| MS.gene010409.t1 | MTR_3g093730 | 36.328 | 256 | 158 | 2 | 1 | 256 | 32 | 282 | 1.62e-42 | 146 |
| MS.gene010409.t1 | MTR_3g093730 | 31.641 | 256 | 125 | 4 | 1 | 256 | 32 | 237 | 1.38e-32 | 119 |
| MS.gene010409.t1 | MTR_5g008130 | 39.241 | 79 | 47 | 1 | 182 | 259 | 2 | 80 | 7.83e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010409.t1 | AT2G23610 | 45.211 | 261 | 132 | 5 | 4 | 259 | 8 | 262 | 8.28e-75 | 229 |
| MS.gene010409.t1 | AT3G50440 | 43.359 | 256 | 140 | 3 | 6 | 259 | 22 | 274 | 2.53e-73 | 225 |
| MS.gene010409.t1 | AT2G23560 | 46.008 | 263 | 129 | 6 | 2 | 259 | 5 | 259 | 1.40e-71 | 220 |
| MS.gene010409.t1 | AT2G23620 | 42.412 | 257 | 145 | 2 | 4 | 259 | 8 | 262 | 1.11e-70 | 218 |
| MS.gene010409.t1 | AT2G23580 | 44.487 | 263 | 136 | 6 | 2 | 259 | 5 | 262 | 1.08e-67 | 210 |
| MS.gene010409.t1 | AT2G23600 | 41.245 | 257 | 148 | 2 | 4 | 259 | 8 | 262 | 3.71e-67 | 209 |
| MS.gene010409.t1 | AT2G23600 | 41.245 | 257 | 148 | 2 | 4 | 259 | 23 | 277 | 6.25e-67 | 209 |
| MS.gene010409.t1 | AT4G37150 | 42.366 | 262 | 137 | 6 | 4 | 259 | 2 | 255 | 4.47e-66 | 206 |
| MS.gene010409.t1 | AT2G23550 | 42.966 | 263 | 140 | 6 | 2 | 259 | 5 | 262 | 5.89e-63 | 198 |
| MS.gene010409.t1 | AT2G23550 | 42.966 | 263 | 140 | 6 | 2 | 259 | 12 | 269 | 6.38e-63 | 199 |
| MS.gene010409.t1 | AT2G23590 | 37.452 | 259 | 152 | 2 | 1 | 259 | 23 | 271 | 3.24e-59 | 189 |
| MS.gene010409.t1 | AT2G23610 | 40.078 | 257 | 106 | 5 | 4 | 259 | 8 | 217 | 7.38e-59 | 186 |
| MS.gene010409.t1 | AT5G10300 | 40.698 | 258 | 144 | 3 | 5 | 259 | 6 | 257 | 1.15e-58 | 187 |
| MS.gene010409.t1 | AT3G29770 | 39.453 | 256 | 151 | 2 | 1 | 256 | 134 | 385 | 7.73e-52 | 174 |
| MS.gene010409.t1 | AT5G58310 | 34.848 | 264 | 162 | 3 | 1 | 258 | 1 | 260 | 3.83e-51 | 168 |
| MS.gene010409.t1 | AT1G26360 | 37.647 | 255 | 155 | 2 | 2 | 256 | 186 | 436 | 1.44e-50 | 171 |
| MS.gene010409.t1 | AT2G23550 | 38.550 | 262 | 124 | 6 | 2 | 259 | 5 | 233 | 1.50e-49 | 163 |
| MS.gene010409.t1 | AT1G69240 | 35.769 | 260 | 155 | 5 | 2 | 256 | 184 | 436 | 2.66e-46 | 160 |
| MS.gene010409.t1 | AT1G33990 | 35.019 | 257 | 156 | 3 | 4 | 256 | 96 | 345 | 6.35e-46 | 157 |
| MS.gene010409.t1 | AT4G09900 | 34.231 | 260 | 160 | 3 | 1 | 256 | 94 | 346 | 3.04e-45 | 155 |
| MS.gene010409.t1 | AT2G23600 | 43.558 | 163 | 91 | 1 | 4 | 165 | 23 | 185 | 9.68e-45 | 149 |
| MS.gene010409.t1 | AT4G16690 | 36.328 | 256 | 141 | 4 | 5 | 252 | 12 | 253 | 3.47e-44 | 150 |
| MS.gene010409.t1 | AT3G10870 | 35.968 | 253 | 159 | 3 | 5 | 256 | 20 | 270 | 4.27e-43 | 148 |
| MS.gene010409.t1 | AT2G23580 | 44.311 | 167 | 85 | 4 | 2 | 163 | 5 | 168 | 7.67e-41 | 140 |
| MS.gene010409.t1 | AT5G10300 | 42.775 | 173 | 92 | 2 | 5 | 174 | 6 | 174 | 8.84e-40 | 137 |
| MS.gene010409.t1 | AT2G23550 | 44.311 | 167 | 85 | 4 | 2 | 163 | 12 | 175 | 4.03e-38 | 133 |
| MS.gene010409.t1 | AT4G37140 | 49.524 | 105 | 53 | 0 | 4 | 108 | 2 | 106 | 1.35e-37 | 129 |
| MS.gene010409.t1 | AT2G23570 | 43.716 | 183 | 94 | 5 | 81 | 259 | 1 | 178 | 2.35e-36 | 127 |
| MS.gene010409.t1 | AT4G37140 | 48.352 | 91 | 47 | 0 | 4 | 94 | 2 | 92 | 1.60e-30 | 110 |
| MS.gene010409.t1 | AT3G29770 | 44.156 | 77 | 43 | 0 | 1 | 77 | 134 | 210 | 1.50e-17 | 80.5 |
Find 60 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.4:-11084676 | MS.gene010409:CDS |
| CCCTTGCAATGTCTTTAATA+AGG | 0.211857 | 5.4:-11084507 | MS.gene010409:CDS |
| GAACCATTTGGTTTATCATT+AGG | 0.217887 | 5.4:+11084688 | None:intergenic |
| AACCATTTGGTTTATCATTA+GGG | 0.239611 | 5.4:+11084689 | None:intergenic |
| TTTGCTGATCAAGAACTATT+AGG | 0.294996 | 5.4:-11084472 | MS.gene010409:CDS |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5.4:-11086740 | MS.gene010409:CDS |
| AACCGTTGATTGGATTTCTA+AGG | 0.331591 | 5.4:-11086667 | MS.gene010409:CDS |
| GATTATTATGAACCGTTGAT+TGG | 0.333490 | 5.4:-11086677 | MS.gene010409:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.4:+11084676 | None:intergenic |
| AGACATTTCGTGTTGGTTCA+TGG | 0.351633 | 5.4:-11086833 | MS.gene010409:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.4:+11086710 | None:intergenic |
| ATTGCAGTATCAACAAAGAT+TGG | 0.372297 | 5.4:-11084749 | MS.gene010409:intron |
| CTCTTTCGGTTTGGAGAACA+TGG | 0.400553 | 5.4:+11084291 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.4:+11086714 | None:intergenic |
| GCGTATCTTCAAGAAATTGC+GGG | 0.452472 | 5.4:-11084262 | MS.gene010409:CDS |
| ATTGCTCTGTTGAAATCTGC+TGG | 0.456073 | 5.4:-11086776 | MS.gene010409:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.457852 | 5.4:-11086808 | MS.gene010409:CDS |
| TTGGTTCATGGAGCTTGCCA+TGG | 0.459523 | 5.4:-11086821 | MS.gene010409:CDS |
| AGAGTCAAGAAGCTTAGATC+AGG | 0.464438 | 5.4:+11086515 | None:intergenic |
| AGTGTCACACAAAACAACTA+TGG | 0.473238 | 5.4:-11084439 | MS.gene010409:CDS |
| CATAATCTTTGTGTCCAAGC+TGG | 0.478530 | 5.4:+11084723 | None:intergenic |
| TGGTTCATGGAGCTTGCCAT+GGG | 0.483424 | 5.4:-11086820 | MS.gene010409:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.486986 | 5.4:+11084334 | None:intergenic |
| TGATCAGCAAAGCTACGAAC+AGG | 0.487222 | 5.4:+11084484 | None:intergenic |
| ATGGAGCTTGCCATGGGGCA+TGG | 0.500266 | 5.4:-11086814 | MS.gene010409:CDS |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5.4:+11086738 | None:intergenic |
| GCCTTATTAAAGACATTGCA+AGG | 0.509202 | 5.4:+11084506 | None:intergenic |
| AGCCCTAATGATAAACCAAA+TGG | 0.509653 | 5.4:-11084691 | MS.gene010409:CDS |
| ACAAAGATTGGATTCCAGCT+TGG | 0.525705 | 5.4:-11084737 | MS.gene010409:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.4:-11086620 | MS.gene010409:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.4:-11086711 | MS.gene010409:CDS |
| AACTTGGTTGCTAAGAATTG+TGG | 0.545480 | 5.4:+11084652 | None:intergenic |
| AGGATAACTCTCTGGTCTTG+TGG | 0.547320 | 5.4:+11086638 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.4:+11086577 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.4:-11086617 | MS.gene010409:CDS |
| TGGAGACAGTTGATACAACT+TGG | 0.572318 | 5.4:+11084636 | None:intergenic |
| GACCCACTAGGATAACTCTC+TGG | 0.572600 | 5.4:+11086630 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.4:-11086594 | MS.gene010409:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5.4:+11086739 | None:intergenic |
| TGCGTATCTTCAAGAAATTG+CGG | 0.593654 | 5.4:-11084263 | MS.gene010409:CDS |
| GACCAGAGAGTTATCCTAGT+GGG | 0.595402 | 5.4:-11086632 | MS.gene010409:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.601541 | 5.4:+11084335 | None:intergenic |
| GACCTTAGAAATCCAATCAA+CGG | 0.603347 | 5.4:+11086665 | None:intergenic |
| AAGAAGCTTAGATCAGGAGA+AGG | 0.607709 | 5.4:+11086521 | None:intergenic |
| CGTATCTTCAAGAAATTGCG+GGG | 0.611463 | 5.4:-11084261 | MS.gene010409:CDS |
| CTTCTTGACTCTTCTCCAAG+AGG | 0.614857 | 5.4:-11086504 | MS.gene010409:intron |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5.4:-11086750 | MS.gene010409:CDS |
| GTATCAACTGTCTCCACCTG+AGG | 0.617568 | 5.4:-11084629 | MS.gene010409:intron |
| GGATACAAGACATTTCGTGT+TGG | 0.618681 | 5.4:-11086840 | MS.gene010409:CDS |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.4:-11086600 | MS.gene010409:CDS |
| ATTAGCCAGCATACCTCAGG+TGG | 0.628093 | 5.4:+11084616 | None:intergenic |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.4:+11084666 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.4:+11086618 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.4:-11086616 | MS.gene010409:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.4:+11086804 | None:intergenic |
| GATTGTTGATGCTGATCACA+TGG | 0.672431 | 5.4:-11084314 | MS.gene010409:CDS |
| CCTTATTAAAGACATTGCAA+GGG | 0.676815 | 5.4:+11084507 | None:intergenic |
| GGTTCATGGAGCTTGCCATG+GGG | 0.706151 | 5.4:-11086819 | MS.gene010409:CDS |
| GTATCTTCAAGAAATTGCGG+GGG | 0.724507 | 5.4:-11084260 | MS.gene010409:CDS |
| AGACCAGAGAGTTATCCTAG+TGG | 0.747538 | 5.4:-11086633 | MS.gene010409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGATCATAATTATAAT+AGG | - | chr5.4:11085113-11085132 | MS.gene010409:intron | 10.0% |
| !!! | AAATATTTTTTTATCAAGTT+TGG | - | chr5.4:11085332-11085351 | MS.gene010409:intron | 10.0% |
| !!! | AAATCTATTTTATATGAATA+TGG | + | chr5.4:11085630-11085649 | None:intergenic | 10.0% |
| !!! | AACTTGATAAAAAAATATTT+TGG | + | chr5.4:11085332-11085351 | None:intergenic | 10.0% |
| !!! | ATAGTTTTGATTTTAAAATT+AGG | + | chr5.4:11086204-11086223 | None:intergenic | 10.0% |
| !!! | TAGTTTTGATTTTAAAATTA+GGG | + | chr5.4:11086203-11086222 | None:intergenic | 10.0% |
| !! | ATTAAAATTAAGATAAAGAG+TGG | - | chr5.4:11086085-11086104 | MS.gene010409:intron | 15.0% |
| !! | CTAAAATACAATAAAGATTA+TGG | - | chr5.4:11084859-11084878 | MS.gene010409:intron | 15.0% |
| !! | TTTAACCCTTATATAATTTA+AGG | + | chr5.4:11086122-11086141 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTAAAATTAG+GGG | + | chr5.4:11086202-11086221 | None:intergenic | 15.0% |
| !!! | TGGTTACTTAATTTTTTTAT+AGG | + | chr5.4:11086277-11086296 | None:intergenic | 15.0% |
| !! | AACACTTATTTAATCCTTAA+AGG | - | chr5.4:11085583-11085602 | MS.gene010409:intron | 20.0% |
| !! | AACGAGTAAAAATAAAAAGA+TGG | - | chr5.4:11085386-11085405 | MS.gene010409:intron | 20.0% |
| !! | AATTGATGAAGGAAAAAAAA+TGG | + | chr5.4:11086297-11086316 | None:intergenic | 20.0% |
| !! | AGTAATATAACATACCTTTA+AGG | + | chr5.4:11085600-11085619 | None:intergenic | 20.0% |
| !! | ATACAATAAAGATTATGGAT+AGG | - | chr5.4:11084864-11084883 | MS.gene010409:intron | 20.0% |
| !! | CCTTTCCTTAAATTATATAA+GGG | - | chr5.4:11086114-11086133 | MS.gene010409:intron | 20.0% |
| !! | TAAAAAGATGGTATGTTTAT+AGG | - | chr5.4:11085398-11085417 | MS.gene010409:intron | 20.0% |
| !! | TCAATATGCTTAAATTCTTT+GGG | - | chr5.4:11086505-11086524 | MS.gene010409:CDS | 20.0% |
| !! | TCCTTTCCTTAAATTATATA+AGG | - | chr5.4:11086113-11086132 | MS.gene010409:intron | 20.0% |
| !! | TTCAATATGCTTAAATTCTT+TGG | - | chr5.4:11086504-11086523 | MS.gene010409:intron | 20.0% |
| !!! | AGAAAATCAAATTTTGGAAA+AGG | - | chr5.4:11086234-11086253 | MS.gene010409:intron | 20.0% |
| !!! | AGAAACAGAAAATCAAATTT+TGG | - | chr5.4:11086228-11086247 | MS.gene010409:intron | 20.0% |
| !!! | CATATATCACATTTCTTTTT+TGG | + | chr5.4:11085143-11085162 | None:intergenic | 20.0% |
| !!! | TCTTTATTGTATTTTAGCTA+AGG | + | chr5.4:11084856-11084875 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTTCATGTGTT+TGG | + | chr5.4:11086156-11086175 | None:intergenic | 20.0% |
| ! | AACCAAAGATTGTATACTTA+CGG | + | chr5.4:11085272-11085291 | None:intergenic | 25.0% |
| ! | AATCGAAATATGATATGTTG+AGG | - | chr5.4:11084976-11084995 | MS.gene010409:intron | 25.0% |
| ! | ACTAATAAACAAATAGGAGT+GGG | - | chr5.4:11085936-11085955 | MS.gene010409:intron | 25.0% |
| ! | ACTATATCATAAACCTCTAT+CGG | + | chr5.4:11084905-11084924 | None:intergenic | 25.0% |
| ! | AGTTTCAAAAATAATCTAGC+TGG | - | chr5.4:11084775-11084794 | MS.gene010409:intron | 25.0% |
| ! | CCCTTATATAATTTAAGGAA+AGG | + | chr5.4:11086117-11086136 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATAATCTAGCT+GGG | - | chr5.4:11084776-11084795 | MS.gene010409:intron | 25.0% |
| ! | TAAATGCTTATATATGAACC+AGG | - | chr5.4:11086555-11086574 | MS.gene010409:CDS | 25.0% |
| ! | TATAGAACAGTAATTGATGA+AGG | + | chr5.4:11086308-11086327 | None:intergenic | 25.0% |
| ! | TCATAGCTATCATCAAATTT+GGG | - | chr5.4:11084646-11084665 | MS.gene010409:CDS | 25.0% |
| ! | TGATGATAGCTATGAAATAT+GGG | + | chr5.4:11084641-11084660 | None:intergenic | 25.0% |
| ! | TTCATAGCTATCATCAAATT+TGG | - | chr5.4:11084645-11084664 | MS.gene010409:CDS | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5.4:11084517-11084536 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTA+GGG | + | chr5.4:11086405-11086424 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | + | chr5.4:11085482-11085501 | None:intergenic | 25.0% |
| !! | TTGATGATAGCTATGAAATA+TGG | + | chr5.4:11084642-11084661 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | + | chr5.4:11085483-11085502 | None:intergenic | 25.0% |
| !!! | CTTGAAAGTTTTTTTGTGAA+GGG | + | chr5.4:11085726-11085745 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGTTTTTTTGTGA+AGG | + | chr5.4:11085727-11085746 | None:intergenic | 25.0% |
| ACAGAGAACAAATCTTTCAT+TGG | - | chr5.4:11085779-11085798 | MS.gene010409:intron | 30.0% | |
| AGCAATAATTTAGTACCTCT+TGG | + | chr5.4:11084605-11084624 | None:intergenic | 30.0% | |
| ATTGCAGTATCAACAAAGAT+TGG | - | chr5.4:11086342-11086361 | MS.gene010409:intron | 30.0% | |
| CACTAATAAACAAATAGGAG+TGG | - | chr5.4:11085935-11085954 | MS.gene010409:intron | 30.0% | |
| CATAATAACGTATGCATATG+TGG | - | chr5.4:11084722-11084741 | MS.gene010409:CDS | 30.0% | |
| CCTTATTAAAGACATTGCAA+GGG | + | chr5.4:11086587-11086606 | None:intergenic | 30.0% | |
| GAGCTAAAAATTTAACTGCA+TGG | - | chr5.4:11085420-11085439 | MS.gene010409:intron | 30.0% | |
| GATTATTATGAACCGTTGAT+TGG | - | chr5.4:11084414-11084433 | MS.gene010409:CDS | 30.0% | |
| GCGATCACTAATAAACAAAT+AGG | - | chr5.4:11085930-11085949 | MS.gene010409:intron | 30.0% | |
| GTAAGCTATATGAATACCTT+GGG | - | chr5.4:11085076-11085095 | MS.gene010409:intron | 30.0% | |
| TTTGCTGATCAAGAACTATT+AGG | - | chr5.4:11086619-11086638 | MS.gene010409:CDS | 30.0% | |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | - | chr5.4:11085495-11085514 | MS.gene010409:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+AGG | + | chr5.4:11086406-11086425 | None:intergenic | 30.0% |
| ! | TATGATCTTTTACCATCAAG+AGG | + | chr5.4:11085105-11085124 | None:intergenic | 30.0% |
| ! | TTTTTCATGTGTTTGGACTT+TGG | + | chr5.4:11086149-11086168 | None:intergenic | 30.0% |
| ! | TTTTTGACACAACCAGAATT+AGG | - | chr5.4:11085810-11085829 | MS.gene010409:intron | 30.0% |
| !! | GTTTTAACACTTTGTCATGT+TGG | + | chr5.4:11086705-11086724 | None:intergenic | 30.0% |
| !!! | AGGTTTTTAAAGCCTAATTC+TGG | + | chr5.4:11085825-11085844 | None:intergenic | 30.0% |
| AACTTGGTTGCTAAGAATTG+TGG | + | chr5.4:11086442-11086461 | None:intergenic | 35.0% | |
| AAGCATGATGCATACATATG+TGG | - | chr5.4:11084674-11084693 | MS.gene010409:CDS | 35.0% | |
| AGATACGCAAAAAGCTCTTT+CGG | + | chr5.4:11086817-11086836 | None:intergenic | 35.0% | |
| AGCCCTAATGATAAACCAAA+TGG | - | chr5.4:11086400-11086419 | MS.gene010409:intron | 35.0% | |
| AGTGTCACACAAAACAACTA+TGG | - | chr5.4:11086652-11086671 | MS.gene010409:CDS | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5.4:11086760-11086779 | None:intergenic | 35.0% | |
| CATGAGACTAATTCTCGAAT+CGG | + | chr5.4:11085043-11085062 | None:intergenic | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | chr5.4:11086418-11086437 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | chr5.4:11086415-11086434 | MS.gene010409:intron | 35.0% | |
| CCCTTGCAATGTCTTTAATA+AGG | - | chr5.4:11086584-11086603 | MS.gene010409:CDS | 35.0% | |
| CTCCGTAAGTATACAATCTT+TGG | - | chr5.4:11085267-11085286 | MS.gene010409:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | + | chr5.4:11086428-11086447 | None:intergenic | 35.0% | |
| GACCTTAGAAATCCAATCAA+CGG | + | chr5.4:11084429-11084448 | None:intergenic | 35.0% | |
| GGTAAGCTATATGAATACCT+TGG | - | chr5.4:11085075-11085094 | MS.gene010409:intron | 35.0% | |
| GTACTAGTAAGTTTCAAGAC+TGG | + | chr5.4:11085878-11085897 | None:intergenic | 35.0% | |
| TAAGTTTCAAGACTGGAGTT+GGG | + | chr5.4:11085871-11085890 | None:intergenic | 35.0% | |
| TATCATAAACCTCTATCGGT+CGG | + | chr5.4:11084901-11084920 | None:intergenic | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5.4:11086759-11086778 | None:intergenic | 35.0% | |
| TGCGTATCTTCAAGAAATTG+CGG | - | chr5.4:11086828-11086847 | MS.gene010409:CDS | 35.0% | |
| ! | AACCGTTGATTGGATTTCTA+AGG | - | chr5.4:11084424-11084443 | MS.gene010409:CDS | 35.0% |
| ! | ATTCTGACCTGATTTGAAGT+TGG | + | chr5.4:11084933-11084952 | None:intergenic | 35.0% |
| ! | CATGTGAAAGCTTTAATAGC+TGG | - | chr5.4:11085494-11085513 | MS.gene010409:intron | 35.0% |
| ! | GCCTTATTAAAGACATTGCA+AGG | + | chr5.4:11086588-11086607 | None:intergenic | 35.0% |
| ! | TTCGAGAATTAGTCTCATGA+CGG | - | chr5.4:11085044-11085063 | MS.gene010409:intron | 35.0% |
| AAGAAGCTTAGATCAGGAGA+AGG | + | chr5.4:11084573-11084592 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | - | chr5.4:11086354-11086373 | MS.gene010409:intron | 40.0% | |
| AGAGTCAAGAAGCTTAGATC+AGG | + | chr5.4:11084579-11084598 | None:intergenic | 40.0% | |
| ATTGCTCTGTTGAAATCTGC+TGG | - | chr5.4:11084315-11084334 | MS.gene010409:CDS | 40.0% | |
| CATAATCTTTGTGTCCAAGC+TGG | + | chr5.4:11086371-11086390 | None:intergenic | 40.0% | |
| CGTATCTTCAAGAAATTGCG+GGG | - | chr5.4:11086830-11086849 | MS.gene010409:CDS | 40.0% | |
| GATTGTTGATGCTGATCACA+TGG | - | chr5.4:11086777-11086796 | MS.gene010409:CDS | 40.0% | |
| GCGTATCTTCAAGAAATTGC+GGG | - | chr5.4:11086829-11086848 | MS.gene010409:CDS | 40.0% | |
| GGAATAGGCTGTAGAGAATT+AGG | + | chr5.4:11085845-11085864 | None:intergenic | 40.0% | |
| GGATACAAGACATTTCGTGT+TGG | - | chr5.4:11084251-11084270 | MS.gene010409:CDS | 40.0% | |
| GTAAGTTTCAAGACTGGAGT+TGG | + | chr5.4:11085872-11085891 | None:intergenic | 40.0% | |
| GTATCTTCAAGAAATTGCGG+GGG | - | chr5.4:11086831-11086850 | MS.gene010409:CDS | 40.0% | |
| GTCTATGCCAACTTCAAATC+AGG | - | chr5.4:11084923-11084942 | MS.gene010409:intron | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5.4:11084531-11084550 | None:intergenic | 40.0% |
| ! | TGGAGACAGTTGATACAACT+TGG | + | chr5.4:11086458-11086477 | None:intergenic | 40.0% |
| !! | AGACATTTCGTGTTGGTTCA+TGG | - | chr5.4:11084258-11084277 | MS.gene010409:CDS | 40.0% |
| !! | AGTCTCATGACGGATACAAA+GGG | - | chr5.4:11085054-11085073 | MS.gene010409:intron | 40.0% |
| !! | TAGTCTCATGACGGATACAA+AGG | - | chr5.4:11085053-11085072 | MS.gene010409:intron | 40.0% |
| AGACCAGAGAGTTATCCTAG+TGG | - | chr5.4:11084458-11084477 | MS.gene010409:CDS | 45.0% | |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5.4:11084491-11084510 | MS.gene010409:CDS | 45.0% | |
| CGCAAAAAGCTCTTTCGGTT+TGG | + | chr5.4:11086812-11086831 | None:intergenic | 45.0% | |
| CTTCTTGACTCTTCTCCAAG+AGG | - | chr5.4:11084587-11084606 | MS.gene010409:intron | 45.0% | |
| GACCAGAGAGTTATCCTAGT+GGG | - | chr5.4:11084459-11084478 | MS.gene010409:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5.4:11084497-11084516 | MS.gene010409:CDS | 45.0% | |
| TAAACCTCTATCGGTCGGTT+TGG | + | chr5.4:11084896-11084915 | None:intergenic | 45.0% | |
| TGATCAGCAAAGCTACGAAC+AGG | + | chr5.4:11086610-11086629 | None:intergenic | 45.0% | |
| TTAACCAAACCGACCGATAG+AGG | - | chr5.4:11084889-11084908 | MS.gene010409:intron | 45.0% | |
| TTCAAGACTGGAGTTGGGTT+GGG | + | chr5.4:11085866-11085885 | None:intergenic | 45.0% | |
| TTTCAAGACTGGAGTTGGGT+TGG | + | chr5.4:11085867-11085886 | None:intergenic | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5.4:11084471-11084490 | MS.gene010409:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5.4:11084475-11084494 | MS.gene010409:CDS | 45.0% |
| ! | TTGATTAGCCAGCATACCTC+AGG | + | chr5.4:11086481-11086500 | None:intergenic | 45.0% |
| !! | AGGATAACTCTCTGGTCTTG+TGG | + | chr5.4:11084456-11084475 | None:intergenic | 45.0% |
| !! | CTCTTTCGGTTTGGAGAACA+TGG | + | chr5.4:11086803-11086822 | None:intergenic | 45.0% |
| ACATTGCAAGGGACAAGTCC+TGG | + | chr5.4:11086576-11086595 | None:intergenic | 50.0% | |
| ATTAGCCAGCATACCTCAGG+TGG | + | chr5.4:11086478-11086497 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5.4:11084476-11084495 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | - | chr5.4:11084341-11084360 | MS.gene010409:CDS | 50.0% | |
| GACCCACTAGGATAACTCTC+TGG | + | chr5.4:11084464-11084483 | None:intergenic | 50.0% | |
| GTATCAACTGTCTCCACCTG+AGG | - | chr5.4:11086462-11086481 | MS.gene010409:intron | 50.0% | |
| TACCTTGGGACACCTCTTGA+TGG | - | chr5.4:11085090-11085109 | MS.gene010409:intron | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5.4:11084380-11084399 | MS.gene010409:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | + | chr5.4:11084355-11084374 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5.4:11084384-11084403 | None:intergenic | 50.0% | |
| TGGTTCATGGAGCTTGCCAT+GGG | - | chr5.4:11084271-11084290 | MS.gene010409:CDS | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | + | chr5.4:11084356-11084375 | None:intergenic | 50.0% | |
| TTGGTTCATGGAGCTTGCCA+TGG | - | chr5.4:11084270-11084289 | MS.gene010409:CDS | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5.4:11084474-11084493 | MS.gene010409:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5.4:11084380-11084399 | None:intergenic | 50.0% |
| !! | ACTGGAGTTGGGTTGGGAAT+AGG | + | chr5.4:11085860-11085879 | None:intergenic | 50.0% |
| !! | TACCATCAAGAGGTGTCCCA+AGG | + | chr5.4:11085095-11085114 | None:intergenic | 50.0% |
| ACCCTAGACATGGCTGCTTC+TGG | - | chr5.4:11084351-11084370 | MS.gene010409:CDS | 55.0% | |
| GGTTCATGGAGCTTGCCATG+GGG | - | chr5.4:11084272-11084291 | MS.gene010409:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5.4:11084290-11084309 | None:intergenic | 55.0% | |
| TGTCTCCACCTGAGGTATGC+TGG | - | chr5.4:11086470-11086489 | MS.gene010409:intron | 55.0% | |
| ATGGAGCTTGCCATGGGGCA+TGG | - | chr5.4:11084277-11084296 | MS.gene010409:CDS | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5.4:11084283-11084302 | MS.gene010409:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11084249 | 11086864 | 11084249 | ID=MS.gene010409 |
| chr5.4 | mRNA | 11084249 | 11086864 | 11084249 | ID=MS.gene010409.t1;Parent=MS.gene010409 |
| chr5.4 | exon | 11086505 | 11086864 | 11086505 | ID=MS.gene010409.t1.exon1;Parent=MS.gene010409.t1 |
| chr5.4 | CDS | 11086505 | 11086864 | 11086505 | ID=cds.MS.gene010409.t1;Parent=MS.gene010409.t1 |
| chr5.4 | exon | 11084630 | 11084764 | 11084630 | ID=MS.gene010409.t1.exon2;Parent=MS.gene010409.t1 |
| chr5.4 | CDS | 11084630 | 11084764 | 11084630 | ID=cds.MS.gene010409.t1;Parent=MS.gene010409.t1 |
| chr5.4 | exon | 11084249 | 11084536 | 11084249 | ID=MS.gene010409.t1.exon3;Parent=MS.gene010409.t1 |
| chr5.4 | CDS | 11084249 | 11084536 | 11084249 | ID=cds.MS.gene010409.t1;Parent=MS.gene010409.t1 |
| Gene Sequence |
| Protein sequence |
