Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06712.t1 | XP_003602244.1 | 99.1 | 214 | 1 | 1 | 1 | 214 | 1 | 213 | 1.10E-112 | 416 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06712.t1 | O81223 | 75.0 | 216 | 52 | 1 | 1 | 214 | 1 | 216 | 1.1e-86 | 320.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06712.t1 | G7J6W3 | 99.1 | 214 | 1 | 1 | 1 | 214 | 1 | 213 | 7.7e-113 | 416.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050496 | MS.gene06712 | -0.806669 | 7.35E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene06712 | 0.804383 | 2.22E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene06712 | 0.813285 | 2.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72376 | MS.gene06712 | PPI |
| MS.gene61257 | MS.gene06712 | PPI |
| MS.gene011601 | MS.gene06712 | PPI |
| MS.gene06712 | MS.gene46392 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06712.t1 | MTR_3g091440 | 99.065 | 214 | 1 | 1 | 1 | 214 | 1 | 213 | 1.94e-155 | 429 |
| MS.gene06712.t1 | MTR_3g091440 | 97.382 | 191 | 5 | 0 | 24 | 214 | 24 | 214 | 1.95e-133 | 374 |
| MS.gene06712.t1 | MTR_3g091440 | 98.101 | 158 | 2 | 1 | 1 | 158 | 1 | 157 | 2.97e-109 | 311 |
| MS.gene06712.t1 | MTR_4g099210 | 64.151 | 212 | 74 | 1 | 1 | 212 | 1 | 210 | 2.48e-98 | 285 |
| MS.gene06712.t1 | MTR_8g099575 | 62.264 | 212 | 78 | 1 | 1 | 212 | 1 | 210 | 5.34e-96 | 278 |
| MS.gene06712.t1 | MTR_8g027620 | 68.182 | 198 | 63 | 0 | 18 | 215 | 39 | 236 | 8.80e-95 | 279 |
| MS.gene06712.t1 | MTR_4g134250 | 58.685 | 213 | 87 | 1 | 1 | 213 | 16 | 227 | 6.96e-93 | 271 |
| MS.gene06712.t1 | MTR_3g060730 | 62.626 | 198 | 74 | 0 | 16 | 213 | 29 | 226 | 4.37e-92 | 269 |
| MS.gene06712.t1 | MTR_5g096420 | 59.330 | 209 | 85 | 0 | 5 | 213 | 18 | 226 | 1.01e-91 | 268 |
| MS.gene06712.t1 | MTR_8g099570 | 57.746 | 213 | 85 | 1 | 1 | 213 | 46 | 253 | 2.44e-89 | 263 |
| MS.gene06712.t1 | MTR_1g016430 | 62.559 | 211 | 76 | 1 | 2 | 209 | 36 | 246 | 5.17e-89 | 262 |
| MS.gene06712.t1 | MTR_2g027500 | 56.190 | 210 | 92 | 0 | 4 | 213 | 15 | 224 | 4.17e-88 | 259 |
| MS.gene06712.t1 | MTR_3g060730 | 62.500 | 184 | 69 | 0 | 30 | 213 | 5 | 188 | 6.78e-86 | 252 |
| MS.gene06712.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 30 | 209 | 1 | 180 | 4.29e-85 | 250 |
| MS.gene06712.t1 | MTR_1g016430 | 59.155 | 213 | 81 | 1 | 3 | 209 | 66 | 278 | 4.01e-84 | 251 |
| MS.gene06712.t1 | MTR_2g027440 | 54.286 | 210 | 96 | 0 | 3 | 212 | 19 | 228 | 2.94e-82 | 244 |
| MS.gene06712.t1 | MTR_2g027480 | 53.810 | 210 | 97 | 0 | 3 | 212 | 19 | 228 | 8.58e-82 | 243 |
| MS.gene06712.t1 | MTR_5g013560 | 55.660 | 212 | 80 | 2 | 1 | 212 | 1 | 198 | 3.83e-76 | 228 |
| MS.gene06712.t1 | MTR_2g027520 | 51.389 | 216 | 101 | 2 | 4 | 215 | 18 | 233 | 4.73e-76 | 229 |
| MS.gene06712.t1 | MTR_8g016170 | 59.184 | 196 | 80 | 0 | 17 | 212 | 60 | 255 | 1.63e-75 | 228 |
| MS.gene06712.t1 | MTR_8g016170 | 59.777 | 179 | 72 | 0 | 17 | 195 | 41 | 219 | 1.06e-69 | 212 |
| MS.gene06712.t1 | MTR_4g113505 | 50.538 | 186 | 92 | 0 | 29 | 214 | 6 | 191 | 2.33e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06712.t1 | AT5G24270 | 75.000 | 216 | 52 | 1 | 1 | 214 | 1 | 216 | 3.48e-116 | 330 |
| MS.gene06712.t1 | AT5G24270 | 75.000 | 216 | 52 | 1 | 1 | 214 | 1 | 216 | 3.48e-116 | 330 |
| MS.gene06712.t1 | AT5G24270 | 75.000 | 216 | 52 | 1 | 1 | 214 | 1 | 216 | 3.48e-116 | 330 |
| MS.gene06712.t1 | AT5G24270 | 76.596 | 188 | 44 | 0 | 27 | 214 | 4 | 191 | 4.21e-102 | 293 |
| MS.gene06712.t1 | AT4G17615 | 63.208 | 212 | 76 | 1 | 1 | 212 | 1 | 210 | 1.09e-95 | 278 |
| MS.gene06712.t1 | AT4G17615 | 63.208 | 212 | 76 | 1 | 1 | 212 | 1 | 210 | 1.09e-95 | 278 |
| MS.gene06712.t1 | AT4G17615 | 63.208 | 212 | 76 | 1 | 1 | 212 | 1 | 210 | 1.09e-95 | 278 |
| MS.gene06712.t1 | AT5G47100 | 62.736 | 212 | 77 | 1 | 1 | 212 | 1 | 210 | 3.85e-95 | 276 |
| MS.gene06712.t1 | AT1G64480 | 64.904 | 208 | 73 | 0 | 5 | 212 | 7 | 214 | 9.05e-95 | 276 |
| MS.gene06712.t1 | AT1G64480 | 64.904 | 208 | 73 | 0 | 5 | 212 | 7 | 214 | 9.05e-95 | 276 |
| MS.gene06712.t1 | AT1G64480 | 64.904 | 208 | 73 | 0 | 5 | 212 | 7 | 214 | 9.05e-95 | 276 |
| MS.gene06712.t1 | AT4G26570 | 62.376 | 202 | 76 | 0 | 12 | 213 | 25 | 226 | 1.93e-92 | 270 |
| MS.gene06712.t1 | AT4G33000 | 62.381 | 210 | 78 | 1 | 3 | 212 | 38 | 246 | 2.15e-90 | 266 |
| MS.gene06712.t1 | AT4G26570 | 61.165 | 206 | 76 | 1 | 12 | 213 | 25 | 230 | 2.57e-90 | 265 |
| MS.gene06712.t1 | AT4G33000 | 62.381 | 210 | 78 | 1 | 3 | 212 | 48 | 256 | 4.34e-90 | 265 |
| MS.gene06712.t1 | AT5G55990 | 58.685 | 213 | 86 | 1 | 1 | 213 | 16 | 226 | 6.42e-90 | 264 |
| MS.gene06712.t1 | AT5G55990 | 58.685 | 213 | 86 | 1 | 1 | 213 | 16 | 226 | 6.42e-90 | 264 |
| MS.gene06712.t1 | AT4G17615 | 64.141 | 198 | 69 | 1 | 1 | 198 | 1 | 196 | 1.39e-88 | 261 |
| MS.gene06712.t1 | AT5G24270 | 74.233 | 163 | 42 | 0 | 52 | 214 | 7 | 169 | 3.89e-86 | 252 |
| MS.gene06712.t1 | AT1G64480 | 64.921 | 191 | 67 | 0 | 5 | 195 | 7 | 197 | 5.63e-86 | 253 |
| MS.gene06712.t1 | AT4G16350 | 55.000 | 200 | 86 | 1 | 14 | 213 | 25 | 220 | 2.67e-76 | 229 |
| MS.gene06712.t1 | AT4G16350 | 55.000 | 200 | 86 | 1 | 14 | 213 | 25 | 220 | 2.67e-76 | 229 |
| MS.gene06712.t1 | AT4G17615 | 63.694 | 157 | 57 | 0 | 56 | 212 | 12 | 168 | 1.97e-71 | 215 |
| MS.gene06712.t1 | AT4G01420 | 50.244 | 205 | 99 | 1 | 1 | 205 | 1 | 202 | 2.13e-70 | 213 |
| MS.gene06712.t1 | AT5G47100 | 63.522 | 159 | 56 | 1 | 1 | 159 | 1 | 157 | 2.17e-69 | 210 |
| MS.gene06712.t1 | AT4G01420 | 50.256 | 195 | 94 | 1 | 1 | 195 | 1 | 192 | 1.88e-66 | 203 |
| MS.gene06712.t1 | AT4G26560 | 47.396 | 192 | 88 | 2 | 35 | 213 | 23 | 214 | 5.28e-61 | 190 |
| MS.gene06712.t1 | AT4G33000 | 59.615 | 156 | 62 | 1 | 3 | 158 | 38 | 192 | 1.62e-58 | 183 |
| MS.gene06712.t1 | AT4G33000 | 59.615 | 156 | 62 | 1 | 3 | 158 | 38 | 192 | 1.62e-58 | 183 |
| MS.gene06712.t1 | AT4G33000 | 60.000 | 155 | 61 | 1 | 3 | 157 | 38 | 191 | 2.50e-58 | 183 |
| MS.gene06712.t1 | AT4G33000 | 58.333 | 108 | 44 | 1 | 3 | 110 | 38 | 144 | 1.82e-34 | 120 |
Find 35 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTCTTGCAATAAAAC+TGG | 0.228799 | 3.3:+76288022 | None:intergenic |
| CGCAACGGCGTTATTGAGTT+TGG | 0.301486 | 3.3:-76288800 | MS.gene06712:CDS |
| GGTTACACTTACTTTAGATA+TGG | 0.371596 | 3.3:+76288153 | None:intergenic |
| AATTCCAGCTAGCACTCTTC+AGG | 0.371966 | 3.3:-76289072 | MS.gene06712:CDS |
| TTGTATGATCTGAGGCAAAC+AGG | 0.377411 | 3.3:-76288558 | MS.gene06712:CDS |
| GCAGTTAAAGGAAATGGTAT+TGG | 0.379876 | 3.3:-76288436 | MS.gene06712:intron |
| GGTGAATTTGTTCGATCTCT+TGG | 0.384084 | 3.3:-76288779 | MS.gene06712:CDS |
| GTCATGTTCTTTATCAAAGA+TGG | 0.400140 | 3.3:+76288180 | None:intergenic |
| AGCAATTCAATTATTGAAGA+TGG | 0.401125 | 3.3:-76289213 | MS.gene06712:CDS |
| TTGTCTTCTAAAGCCGCATT+TGG | 0.412464 | 3.3:+76288746 | None:intergenic |
| TTATTTGCAGTTAAAGGAAA+TGG | 0.412783 | 3.3:-76288442 | MS.gene06712:intron |
| GATAGAGGCTATTGTGGATA+AGG | 0.439938 | 3.3:-76288373 | MS.gene06712:intron |
| CATTCCTGAAGAGTGCTAGC+TGG | 0.479014 | 3.3:+76289068 | None:intergenic |
| GATGCTGATACAAAAGATGA+TGG | 0.508848 | 3.3:-76288246 | MS.gene06712:CDS |
| GCTTTCAGATGATATGATAG+AGG | 0.531839 | 3.3:-76288388 | MS.gene06712:CDS |
| ACACTTACTTTAGATATGGA+AGG | 0.535196 | 3.3:+76288157 | None:intergenic |
| AATAAAACTGGGAAATGCTA+AGG | 0.541646 | 3.3:+76288034 | None:intergenic |
| TAAAACACCACCAGGCTATG+AGG | 0.560691 | 3.3:-76289437 | MS.gene06712:CDS |
| CTGATACAAAAGATGATGGA+AGG | 0.564303 | 3.3:-76288242 | MS.gene06712:CDS |
| CACTTACTTTAGATATGGAA+GGG | 0.565574 | 3.3:+76288158 | None:intergenic |
| TGATATGATAGAGGCTATTG+TGG | 0.568591 | 3.3:-76288379 | MS.gene06712:CDS |
| ACTGTGGGATCCTCATAGCC+TGG | 0.572736 | 3.3:+76289427 | None:intergenic |
| TCTGTTCTTGCAATAAAACT+GGG | 0.575355 | 3.3:+76288023 | None:intergenic |
| TGAAGATGGTCTTATTCACA+AGG | 0.588994 | 3.3:-76289199 | MS.gene06712:intron |
| GTTTCAGAAGCAAGAACTGT+GGG | 0.589683 | 3.3:+76289412 | None:intergenic |
| AACAGAAGTTGAAGACTCAG+AGG | 0.590695 | 3.3:-76288006 | MS.gene06712:CDS |
| TTATTTGATGTTAAGCGCAA+CGG | 0.591522 | 3.3:-76288815 | MS.gene06712:CDS |
| GAAGGATTGATCAAGATGAG+TGG | 0.600746 | 3.3:-76288224 | MS.gene06712:CDS |
| TGTATGATCTGAGGCAAACA+GGG | 0.613793 | 3.3:-76288557 | MS.gene06712:CDS |
| AGTTACTGTGAGTGAAGTAG+AGG | 0.623440 | 3.3:-76289262 | MS.gene06712:CDS |
| ACAGAAGTTGAAGACTCAGA+GGG | 0.628937 | 3.3:-76288005 | MS.gene06712:CDS |
| AGGGTACATTGAAAGAGAAG+AGG | 0.631645 | 3.3:-76288538 | MS.gene06712:intron |
| AAGAATGTTAAAACACCACC+AGG | 0.637444 | 3.3:-76289445 | MS.gene06712:CDS |
| GTGGGATCCTCATAGCCTGG+TGG | 0.686147 | 3.3:+76289430 | None:intergenic |
| TGTTTCAGAAGCAAGAACTG+TGG | 0.689885 | 3.3:+76289411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3.3:76288130-76288149 | None:intergenic | 10.0% |
| !! | CTATATTAATATTAAACTTT+AGG | - | chr3.3:76288971-76288990 | MS.gene06712:intron | 10.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3.3:76288372-76288391 | MS.gene06712:intron | 15.0% |
| !! | TTATGGTTATTTATTGAATT+GGG | - | chr3.3:76288861-76288880 | MS.gene06712:intron | 15.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3.3:76288640-76288659 | None:intergenic | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAT+TGG | + | chr3.3:76289356-76289375 | None:intergenic | 20.0% |
| !! | GTTATGGTTATTTATTGAAT+TGG | - | chr3.3:76288860-76288879 | MS.gene06712:intron | 20.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3.3:76288127-76288146 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3.3:76288837-76288856 | None:intergenic | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3.3:76289142-76289161 | None:intergenic | 20.0% |
| !! | TTTAATCTTATGTTAGAACT+TGG | - | chr3.3:76288996-76289015 | MS.gene06712:intron | 20.0% |
| !!! | AAAATTGGATTTTCATTAAG+AGG | + | chr3.3:76289341-76289360 | None:intergenic | 20.0% |
| !!! | AATCCAATTTTTTTATTGAC+TGG | - | chr3.3:76289350-76289369 | MS.gene06712:intron | 20.0% |
| !!! | ATATTTTTGTAGAAGAGATT+AGG | + | chr3.3:76288362-76288381 | None:intergenic | 20.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3.3:76288334-76288353 | MS.gene06712:intron | 25.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3.3:76288257-76288276 | MS.gene06712:CDS | 25.0% |
| ! | GCAAGAGTTATAATATGTTA+TGG | - | chr3.3:76288844-76288863 | MS.gene06712:intron | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3.3:76288459-76288478 | MS.gene06712:intron | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3.3:76289028-76289047 | MS.gene06712:intron | 25.0% |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3.3:76289439-76289458 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3.3:76289316-76289335 | None:intergenic | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3.3:76288819-76288838 | None:intergenic | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3.3:76288472-76288491 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3.3:76289315-76289334 | None:intergenic | 30.0% | |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3.3:76289022-76289041 | MS.gene06712:intron | 30.0% | |
| GCATTAGAATGAAATAATGC+AGG | + | chr3.3:76288599-76288618 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3.3:76289320-76289339 | None:intergenic | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3.3:76289293-76289312 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3.3:76288820-76288839 | None:intergenic | 30.0% | |
| TATCCATCTTCATCATTAAC+CGG | - | chr3.3:76288091-76288110 | MS.gene06712:intron | 30.0% | |
| TATGTTAGAACTTGGAATCA+TGG | - | chr3.3:76289004-76289023 | MS.gene06712:intron | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3.3:76289450-76289469 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3.3:76288655-76288674 | MS.gene06712:intron | 30.0% | |
| TTCTGTTCTTGCAATAAAAC+TGG | + | chr3.3:76289451-76289470 | None:intergenic | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3.3:76288889-76288908 | MS.gene06712:intron | 30.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3.3:76288814-76288833 | None:intergenic | 35.0% | |
| AAGAATGTTAAAACACCACC+AGG | - | chr3.3:76288025-76288044 | MS.gene06712:CDS | 35.0% | |
| AATATCCCTACAAAATGTGG+AGG | + | chr3.3:76289415-76289434 | None:intergenic | 35.0% | |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3.3:76288431-76288450 | MS.gene06712:CDS | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3.3:76289137-76289156 | None:intergenic | 35.0% | |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3.3:76288113-76288132 | None:intergenic | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3.3:76288432-76288451 | MS.gene06712:CDS | 35.0% | |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3.3:76288621-76288640 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3.3:76289224-76289243 | MS.gene06712:CDS | 35.0% | |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3.3:76289034-76289053 | MS.gene06712:intron | 35.0% | |
| GCTTTCAGATGATATGATAG+AGG | - | chr3.3:76289082-76289101 | MS.gene06712:intron | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3.3:76289418-76289437 | None:intergenic | 35.0% | |
| TGATATGATAGAGGCTATTG+TGG | - | chr3.3:76289091-76289110 | MS.gene06712:intron | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3.3:76288711-76288730 | MS.gene06712:intron | 35.0% |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3.3:76288097-76288116 | None:intergenic | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3.3:76288806-76288825 | MS.gene06712:CDS | 35.0% |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3.3:76289228-76289247 | MS.gene06712:CDS | 35.0% |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3.3:76288271-76288290 | MS.gene06712:intron | 35.0% |
| !!! | AAGCTCTAGGATCTTTTGAT+AGG | - | chr3.3:76288508-76288527 | MS.gene06712:intron | 35.0% |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3.3:76288904-76288923 | MS.gene06712:intron | 35.0% |
| AACAGAAGTTGAAGACTCAG+AGG | - | chr3.3:76289464-76289483 | MS.gene06712:CDS | 40.0% | |
| ACAGAAGTTGAAGACTCAGA+GGG | - | chr3.3:76289465-76289484 | MS.gene06712:CDS | 40.0% | |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3.3:76288932-76288951 | MS.gene06712:intron | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3.3:76288208-76288227 | MS.gene06712:CDS | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3.3:76289246-76289265 | MS.gene06712:CDS | 40.0% | |
| GAGATTAGGCACCTGAATTA+AGG | + | chr3.3:76288348-76288367 | None:intergenic | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3.3:76289097-76289116 | MS.gene06712:intron | 40.0% | |
| GATCTTCTTGTTCAAGCTCT+AGG | - | chr3.3:76288495-76288514 | MS.gene06712:intron | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3.3:76288085-76288104 | None:intergenic | 40.0% | |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3.3:76288061-76288080 | None:intergenic | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3.3:76288062-76288081 | None:intergenic | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3.3:76288691-76288710 | MS.gene06712:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3.3:76288913-76288932 | MS.gene06712:intron | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3.3:76288912-76288931 | MS.gene06712:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3.3:76288727-76288746 | None:intergenic | 40.0% |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3.3:76288398-76288417 | MS.gene06712:CDS | 45.0% | |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3.3:76289412-76289431 | None:intergenic | 45.0% | |
| TAAAACACCACCAGGCTATG+AGG | - | chr3.3:76288033-76288052 | MS.gene06712:CDS | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3.3:76289406-76289425 | MS.gene06712:intron | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3.3:76289407-76289426 | MS.gene06712:CDS | 45.0% |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3.3:76288670-76288689 | MS.gene06712:intron | 50.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3.3:76288405-76288424 | None:intergenic | 50.0% |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3.3:76288046-76288065 | None:intergenic | 55.0% | |
| GTGGGATCCTCATAGCCTGG+TGG | + | chr3.3:76288043-76288062 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76288001 | 76289491 | 76288001 | ID=MS.gene06712 |
| chr3.3 | mRNA | 76288001 | 76289491 | 76288001 | ID=MS.gene06712.t1;Parent=MS.gene06712 |
| chr3.3 | exon | 76289407 | 76289491 | 76289407 | ID=MS.gene06712.t1.exon1;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76289407 | 76289491 | 76289407 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76289200 | 76289282 | 76289200 | ID=MS.gene06712.t1.exon2;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76289200 | 76289282 | 76289200 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76289039 | 76289098 | 76289039 | ID=MS.gene06712.t1.exon3;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76289039 | 76289098 | 76289039 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76288738 | 76288846 | 76288738 | ID=MS.gene06712.t1.exon4;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76288738 | 76288846 | 76288738 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76288539 | 76288591 | 76288539 | ID=MS.gene06712.t1.exon5;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76288539 | 76288591 | 76288539 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76288374 | 76288454 | 76288374 | ID=MS.gene06712.t1.exon6;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76288374 | 76288454 | 76288374 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76288165 | 76288277 | 76288165 | ID=MS.gene06712.t1.exon7;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76288165 | 76288277 | 76288165 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| chr3.3 | exon | 76288001 | 76288064 | 76288001 | ID=MS.gene06712.t1.exon8;Parent=MS.gene06712.t1 |
| chr3.3 | CDS | 76288001 | 76288064 | 76288001 | ID=cds.MS.gene06712.t1;Parent=MS.gene06712.t1 |
| Gene Sequence |
| Protein sequence |
