Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012130.t1 | XP_024629212.1 | 96.5 | 1018 | 36 | 0 | 1 | 1018 | 1 | 1018 | 0.00E+00 | 1998.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012130.t1 | C0HJB3 | 77.7 | 987 | 212 | 3 | 33 | 1018 | 2 | 981 | 0.0e+00 | 1572.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012130.t1 | G7LB83 | 96.5 | 1018 | 36 | 0 | 1 | 1018 | 1 | 1018 | 0.0e+00 | 1998.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033714 | MS.gene012130 | PPI |
| MS.gene065392 | MS.gene012130 | PPI |
| MS.gene033712 | MS.gene012130 | PPI |
| MS.gene024279 | MS.gene012130 | PPI |
| MS.gene73391 | MS.gene012130 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012130.t1 | MTR_8g075330 | 96.464 | 1018 | 36 | 0 | 1 | 1018 | 1 | 1018 | 0.0 | 2054 |
| MS.gene012130.t1 | MTR_7g084030 | 60.040 | 1011 | 389 | 8 | 13 | 1018 | 51 | 1051 | 0.0 | 1254 |
| MS.gene012130.t1 | MTR_7g084040 | 58.597 | 1012 | 400 | 5 | 15 | 1018 | 7 | 1007 | 0.0 | 1246 |
| MS.gene012130.t1 | MTR_3g098650 | 60.682 | 997 | 374 | 9 | 31 | 1018 | 27 | 1014 | 0.0 | 1245 |
| MS.gene012130.t1 | MTR_7g084030 | 61.462 | 807 | 306 | 3 | 13 | 818 | 6 | 808 | 0.0 | 1049 |
| MS.gene012130.t1 | MTR_6g008850 | 29.070 | 860 | 492 | 28 | 44 | 827 | 138 | 955 | 3.08e-88 | 308 |
| MS.gene012130.t1 | MTR_4g071680 | 27.907 | 860 | 489 | 30 | 44 | 827 | 138 | 942 | 1.84e-76 | 273 |
| MS.gene012130.t1 | MTR_3g013720 | 67.347 | 49 | 16 | 0 | 56 | 104 | 11 | 59 | 2.42e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012130.t1 | AT5G66150 | 66.270 | 1008 | 316 | 4 | 30 | 1018 | 32 | 1034 | 0.0 | 1385 |
| MS.gene012130.t1 | AT5G66150 | 66.204 | 1009 | 316 | 5 | 30 | 1018 | 32 | 1035 | 0.0 | 1381 |
| MS.gene012130.t1 | AT3G26720 | 59.762 | 1009 | 392 | 6 | 12 | 1018 | 7 | 1003 | 0.0 | 1248 |
| MS.gene012130.t1 | AT5G13980 | 58.227 | 1015 | 404 | 7 | 14 | 1018 | 6 | 1010 | 0.0 | 1197 |
| MS.gene012130.t1 | AT5G13980 | 58.227 | 1015 | 404 | 7 | 14 | 1018 | 6 | 1010 | 0.0 | 1197 |
| MS.gene012130.t1 | AT3G26720 | 59.539 | 954 | 376 | 4 | 12 | 965 | 7 | 950 | 0.0 | 1185 |
| MS.gene012130.t1 | AT3G26720 | 59.958 | 944 | 368 | 4 | 12 | 955 | 7 | 940 | 0.0 | 1181 |
| MS.gene012130.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1152 |
| MS.gene012130.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1152 |
| MS.gene012130.t1 | AT5G13980 | 59.179 | 926 | 362 | 5 | 14 | 933 | 6 | 921 | 0.0 | 1122 |
| MS.gene012130.t1 | AT5G66150 | 63.405 | 746 | 248 | 5 | 293 | 1018 | 1 | 741 | 0.0 | 960 |
| MS.gene012130.t1 | AT5G14950 | 29.466 | 862 | 493 | 28 | 42 | 827 | 150 | 972 | 2.51e-90 | 314 |
Find 240 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTTGTTCTTGTGTTTC+TGG | 0.042893 | 8.4:+29852120 | None:intergenic |
| ATTATATGTAAAGGCCTATT+TGG | 0.105844 | 8.4:-29847640 | MS.gene012130:CDS |
| AATCCGAACATATCGCTTTA+AGG | 0.183139 | 8.4:+29848898 | None:intergenic |
| AGAAATCACTTGAAGTTATT+TGG | 0.183366 | 8.4:-29850003 | MS.gene012130:CDS |
| AATTTACTCACCAGTCTTAT+TGG | 0.190851 | 8.4:-29845376 | MS.gene012130:CDS |
| GATTCTAAGTGGATACTATT+TGG | 0.198412 | 8.4:-29848879 | MS.gene012130:intron |
| TGAAATAGAAGCCAATATTT+TGG | 0.205982 | 8.4:+29847597 | None:intergenic |
| ATGATTGACCAAACAACTTT+AGG | 0.232196 | 8.4:-29851571 | MS.gene012130:CDS |
| CTAAAGTAGCTTTGCTGAAT+TGG | 0.234744 | 8.4:+29847197 | None:intergenic |
| TTCATCAGAAGTTTAATTCT+TGG | 0.244314 | 8.4:-29846744 | MS.gene012130:CDS |
| TTAGGAGGCAAGCTGTAATT+TGG | 0.255269 | 8.4:+29845190 | None:intergenic |
| TTGATCAGAAAGCAGAAAAT+TGG | 0.263725 | 8.4:-29845249 | MS.gene012130:intron |
| ACTGGGGCTGGTATTGTTAA+AGG | 0.270380 | 8.4:-29852668 | MS.gene012130:CDS |
| CTTCTCTTGATTTGTTACTA+TGG | 0.271293 | 8.4:-29852722 | MS.gene012130:CDS |
| CACCCATTGTCCACATGATA+TGG | 0.273078 | 8.4:+29849402 | None:intergenic |
| AAAGCTACTTACTCCAGTTT+TGG | 0.288506 | 8.4:+29847312 | None:intergenic |
| AATGACATCTTTAAATTTCC+CGG | 0.289249 | 8.4:+29847373 | None:intergenic |
| GGTTGGCAGATTGATCCTTT+TGG | 0.295379 | 8.4:-29851505 | MS.gene012130:CDS |
| ATTGATCCACTATGTTAATA+AGG | 0.300775 | 8.4:-29849330 | MS.gene012130:intron |
| AGCTGAAGAACCAAATGTTT+TGG | 0.302866 | 8.4:+29849973 | None:intergenic |
| GTTTCCACTTGATAGGTATA+AGG | 0.307766 | 8.4:-29847453 | MS.gene012130:intron |
| TCTCAAGTTCCTGACCTTAG+AGG | 0.308074 | 8.4:+29848586 | None:intergenic |
| TCTAATTCTACATAGGTTAG+AGG | 0.312818 | 8.4:-29845465 | MS.gene012130:intron |
| TGATTGACCAAACAACTTTA+GGG | 0.316065 | 8.4:-29851570 | MS.gene012130:CDS |
| CACGAGGGGTTGTATTAAAT+TGG | 0.322682 | 8.4:+29851530 | None:intergenic |
| CAAAACAAGCCCCAAAATAT+TGG | 0.322873 | 8.4:-29847608 | MS.gene012130:CDS |
| TCGACTTTAGATGATACTTT+TGG | 0.328452 | 8.4:-29848710 | MS.gene012130:CDS |
| GCAAACACAAACTTTCTGTT+TGG | 0.329089 | 8.4:+29852377 | None:intergenic |
| CAATTCAGCAAAGCTACTTT+AGG | 0.330227 | 8.4:-29847196 | MS.gene012130:CDS |
| AGCAGTTGTTAGCTCTTCTT+TGG | 0.334571 | 8.4:-29848464 | MS.gene012130:CDS |
| TGGCTCCAACAATTCCATTC+AGG | 0.334713 | 8.4:-29852570 | MS.gene012130:intron |
| TTTAGGGCATCGCTTTATAA+AGG | 0.337081 | 8.4:-29851554 | MS.gene012130:CDS |
| CGGATGTATAATTCCAAAAC+TGG | 0.343864 | 8.4:-29847325 | MS.gene012130:CDS |
| CACTTCACCGTCTTTGATGC+TGG | 0.350461 | 8.4:+29845786 | None:intergenic |
| CACAAGAATGACAGCAAATA+TGG | 0.350745 | 8.4:-29846365 | MS.gene012130:CDS |
| TTGGCATTGGTGTAAATAGA+TGG | 0.353346 | 8.4:+29849113 | None:intergenic |
| TTATCTGTCCAGCTCAATCT+TGG | 0.357436 | 8.4:-29845871 | MS.gene012130:intron |
| CATTCCACAGGCTAAAGATT+TGG | 0.365954 | 8.4:-29848126 | MS.gene012130:intron |
| GTTAGAGGAAATTACTATAT+AGG | 0.366024 | 8.4:-29845450 | MS.gene012130:CDS |
| TTATATGTAAAGGCCTATTT+GGG | 0.366264 | 8.4:-29847639 | MS.gene012130:CDS |
| GAGCACTTACTTCATTTCTA+AGG | 0.367741 | 8.4:-29847550 | MS.gene012130:CDS |
| GTCTTTGATGCTGGCTCCAC+CGG | 0.369918 | 8.4:+29845795 | None:intergenic |
| TCTTCATTTCTGACTTCTCT+TGG | 0.370190 | 8.4:+29844576 | None:intergenic |
| TGGATCCATGAGAGTTCCTT+TGG | 0.376062 | 8.4:+29845210 | None:intergenic |
| GAATATTGAGCATCTTCATT+TGG | 0.378827 | 8.4:+29844764 | None:intergenic |
| TATGCGAAACGGTTGGCTAT+TGG | 0.379907 | 8.4:-29848611 | MS.gene012130:CDS |
| ATCTAAAGTCGATCTCTTAC+CGG | 0.380760 | 8.4:+29848721 | None:intergenic |
| GTCATCAGTTGTATGTTGTT+TGG | 0.389959 | 8.4:+29848634 | None:intergenic |
| TGGCGTGCCTCCAAAACATT+TGG | 0.391529 | 8.4:-29849983 | MS.gene012130:CDS |
| ACTGATCTTGAAATAATAGT+TGG | 0.409663 | 8.4:+29847017 | None:intergenic |
| CGACACAGGTTCGAGATCAT+AGG | 0.414568 | 8.4:-29846213 | MS.gene012130:intron |
| TGGAATTGTTCTTCTCCGTT+TGG | 0.414621 | 8.4:-29845064 | MS.gene012130:CDS |
| AGAGTTATCAAGGCAACATT+AGG | 0.415243 | 8.4:+29845172 | None:intergenic |
| TACTTCATTTCTAAGGCAGC+TGG | 0.419682 | 8.4:-29847543 | MS.gene012130:CDS |
| AACCATATCATGTGGACAAT+GGG | 0.425505 | 8.4:-29849404 | MS.gene012130:CDS |
| TCACGCTGGCGTCGTACAAC+TGG | 0.425773 | 8.4:-29845405 | MS.gene012130:CDS |
| CTGATGGAGCAAATGCATAT+TGG | 0.425917 | 8.4:-29848946 | MS.gene012130:CDS |
| GTTGGCTATTGGAGCCTCTA+AGG | 0.425962 | 8.4:-29848600 | MS.gene012130:intron |
| TTTCTTTGTTGGAACCTGTA+AGG | 0.426076 | 8.4:+29849871 | None:intergenic |
| AAAGTTTGTGTTTGCAGAGA+TGG | 0.431473 | 8.4:-29852369 | MS.gene012130:intron |
| TGAACCAAGACTCTGCATAT+TGG | 0.432026 | 8.4:+29849366 | None:intergenic |
| CCGTTTGGCACATCTATATG+AGG | 0.432117 | 8.4:-29845049 | MS.gene012130:intron |
| TATCTGTCCAGCTCAATCTT+GGG | 0.432754 | 8.4:-29845870 | MS.gene012130:intron |
| AGCGATGCCCTAAAGTTGTT+TGG | 0.434754 | 8.4:+29851563 | None:intergenic |
| AAGTGGAATTGATGCTTCAT+AGG | 0.440066 | 8.4:-29845768 | MS.gene012130:intron |
| TGATTTCTTCTGTAGGCATC+TGG | 0.440675 | 8.4:-29847071 | MS.gene012130:intron |
| CAGTGGCCACAACTGGTTTG+CGG | 0.443170 | 8.4:+29849085 | None:intergenic |
| ATTTCTAAGGCAGCTGGAAA+AGG | 0.447449 | 8.4:-29847537 | MS.gene012130:intron |
| ATCTACCTCAAGAGTTATCA+AGG | 0.447470 | 8.4:+29845162 | None:intergenic |
| CCCTTACCTTATTAACATAG+TGG | 0.452700 | 8.4:+29849324 | None:intergenic |
| GACAAGAACCTCAAGCAGTA+AGG | 0.456135 | 8.4:-29844523 | MS.gene012130:CDS |
| GCGGTCCAAGGTTACCTACT+TGG | 0.459802 | 8.4:-29851475 | MS.gene012130:CDS |
| TGATATGCAGGTGCCCTTCA+AGG | 0.460593 | 8.4:-29846794 | MS.gene012130:intron |
| TTGATAGGTATAAGGAGAAA+AGG | 0.463996 | 8.4:-29847445 | MS.gene012130:intron |
| TGTTGTTGAGCTTGGTCCTA+TGG | 0.466620 | 8.4:-29844474 | MS.gene012130:CDS |
| GAAAATGATCATAACCTGAA+TGG | 0.467764 | 8.4:+29852556 | None:intergenic |
| TTTAAGAAAATTATATGTAA+AGG | 0.468019 | 8.4:-29847649 | MS.gene012130:CDS |
| GGAATCCACAACGTTGGATC+TGG | 0.470106 | 8.4:-29845429 | MS.gene012130:CDS |
| TTTCAGAAAATCCCTTCCAT+TGG | 0.471075 | 8.4:+29846315 | None:intergenic |
| TGTGGAGCACTATAATGAAC+AGG | 0.475976 | 8.4:+29849929 | None:intergenic |
| TTCTGTTTGGATCCTTCTGA+AGG | 0.477706 | 8.4:+29852390 | None:intergenic |
| AGGAAAATTGAACGTTCACT+TGG | 0.480310 | 8.4:-29852648 | MS.gene012130:CDS |
| CATAACCTGAATGGAATTGT+TGG | 0.482086 | 8.4:+29852565 | None:intergenic |
| AAAGTTACTCAGCCCGTAGC+AGG | 0.482242 | 8.4:-29846175 | MS.gene012130:CDS |
| TTCTTTGTTGGAACCTGTAA+GGG | 0.486019 | 8.4:+29849872 | None:intergenic |
| AAGACTCTGCATATTGGTAC+TGG | 0.486443 | 8.4:+29849372 | None:intergenic |
| TTTGACACGTTGTTCAACAT+TGG | 0.488889 | 8.4:+29849745 | None:intergenic |
| TTTGGCCTTGGAGATGCTCT+AGG | 0.491156 | 8.4:-29848692 | MS.gene012130:CDS |
| CAGCAAAGCTACTTTAGGTA+TGG | 0.493274 | 8.4:-29847191 | MS.gene012130:CDS |
| AAAATGACATGGAAGGTTGA+AGG | 0.496215 | 8.4:-29844554 | MS.gene012130:CDS |
| TGTGGAATGCTGTCTTCTGT+TGG | 0.496724 | 8.4:+29848140 | None:intergenic |
| CAACCTCTGGACAACTCAAA+CGG | 0.503583 | 8.4:-29847345 | MS.gene012130:CDS |
| AGAGTCTTGGTTCAAGCAAA+TGG | 0.505251 | 8.4:-29849357 | MS.gene012130:CDS |
| TCTCACCATTCTTACTGTTG+AGG | 0.506377 | 8.4:+29847410 | None:intergenic |
| GGAATGCTGTCTTCTGTTGG+AGG | 0.506724 | 8.4:+29848143 | None:intergenic |
| ACTCCATCATCGGTAGGAAT+CGG | 0.507609 | 8.4:+29846403 | None:intergenic |
| CGGTCCACGAATTACCTTGA+AGG | 0.508635 | 8.4:+29846780 | None:intergenic |
| AGGACGACGGTAGAGGAGTA+GGG | 0.510321 | 8.4:-29845651 | MS.gene012130:CDS |
| GGGTGATGAAACTGATTCTC+AGG | 0.511037 | 8.4:-29847159 | MS.gene012130:intron |
| AGGATAGTAGTTTCCTGCTA+CGG | 0.511417 | 8.4:+29846162 | None:intergenic |
| ACAAAGTACAACACTGGGGC+TGG | 0.511419 | 8.4:-29852680 | MS.gene012130:CDS |
| GAGGACGACGGTAGAGGAGT+AGG | 0.514200 | 8.4:-29845652 | MS.gene012130:CDS |
| GGTCCGATTCCTACCGATGA+TGG | 0.515528 | 8.4:-29846406 | MS.gene012130:CDS |
| TAACGTTGAAATACAGTATG+TGG | 0.518240 | 8.4:-29847694 | MS.gene012130:CDS |
| AGTACCAATATGCAGAGTCT+TGG | 0.519215 | 8.4:-29849370 | MS.gene012130:CDS |
| GTCTTAGTTGATCGTGCCAC+CGG | 0.520403 | 8.4:-29845814 | MS.gene012130:CDS |
| CGGCCTTAAAGCGATATGTT+CGG | 0.520755 | 8.4:-29848901 | MS.gene012130:CDS |
| GAGAACATTGACATCGGACC+GGG | 0.521614 | 8.4:-29847391 | MS.gene012130:CDS |
| TCTTACTGTTGAGGTGTGAG+AGG | 0.523199 | 8.4:+29847419 | None:intergenic |
| GGATAGTAGTTTCCTGCTAC+GGG | 0.524375 | 8.4:+29846163 | None:intergenic |
| TTTAATACAACCCCTCGTGC+TGG | 0.525147 | 8.4:-29851526 | MS.gene012130:CDS |
| GAACATATCGCTTTAAGGCC+GGG | 0.527144 | 8.4:+29848903 | None:intergenic |
| TTTGGACACTCTGCGGTCCA+AGG | 0.528189 | 8.4:-29851487 | MS.gene012130:CDS |
| GCAGATAAAAGAGTTGAAAG+AGG | 0.528239 | 8.4:-29844615 | MS.gene012130:intron |
| GATAATAATAGTACATGTGA+TGG | 0.528779 | 8.4:-29845592 | MS.gene012130:CDS |
| CTTTAGGTATGGCTCTAGTG+AGG | 0.529620 | 8.4:-29847180 | MS.gene012130:CDS |
| ACTGTTGATCAATACTATGT+TGG | 0.529854 | 8.4:-29852590 | MS.gene012130:CDS |
| CAGCACCAAGTAGGTAACCT+TGG | 0.533551 | 8.4:+29851470 | None:intergenic |
| ACAAGAACCTCAAGCAGTAA+GGG | 0.535520 | 8.4:-29844522 | MS.gene012130:CDS |
| GGAGCAAATGCATATTGGAC+AGG | 0.535924 | 8.4:-29848941 | MS.gene012130:CDS |
| TCACACCTCAACAGTAAGAA+TGG | 0.536175 | 8.4:-29847415 | MS.gene012130:CDS |
| TATCAGTACGATTCCATCCA+AGG | 0.536627 | 8.4:+29847851 | None:intergenic |
| ATAGTTGGAGAGGATTCCCT+TGG | 0.536777 | 8.4:+29847032 | None:intergenic |
| TAAGCCAACCAACATCATCA+TGG | 0.537764 | 8.4:+29852615 | None:intergenic |
| AAATGACATGGAAGGTTGAA+GGG | 0.537918 | 8.4:-29844553 | MS.gene012130:CDS |
| AGTTCCTTTGGTTAAATGAG+AGG | 0.539673 | 8.4:+29845222 | None:intergenic |
| GTTTAATTCTTGGATTTACC+AGG | 0.541252 | 8.4:-29846734 | MS.gene012130:intron |
| TTTATACTGATTCCAATGGA+AGG | 0.541284 | 8.4:-29846327 | MS.gene012130:CDS |
| TTTAACCAAAGGAACTCTCA+TGG | 0.542454 | 8.4:-29845215 | MS.gene012130:CDS |
| TTCGAGATCATAGGGAAGAC+TGG | 0.542554 | 8.4:-29846204 | MS.gene012130:CDS |
| CATACACAAAGTACAACACT+GGG | 0.543372 | 8.4:-29852685 | MS.gene012130:CDS |
| GTGCATATATATTCCGTCCA+AGG | 0.545960 | 8.4:-29847049 | MS.gene012130:CDS |
| GTGCCCTTCAAGGTAATTCG+TGG | 0.546167 | 8.4:-29846784 | MS.gene012130:CDS |
| TTGATCGAGGACGACGGTAG+AGG | 0.546178 | 8.4:-29845658 | MS.gene012130:CDS |
| TGTCTTGCTAGTAAGAAATC+CGG | 0.547021 | 8.4:-29848439 | MS.gene012130:CDS |
| CGAACATATCGCTTTAAGGC+CGG | 0.548372 | 8.4:+29848902 | None:intergenic |
| ATCAGTACGATTCCATCCAA+GGG | 0.550510 | 8.4:+29847852 | None:intergenic |
| TTATACTGATTCCAATGGAA+GGG | 0.550949 | 8.4:-29846326 | MS.gene012130:CDS |
| ACGGGCTGAGTAACTTTAAG+TGG | 0.551483 | 8.4:+29846181 | None:intergenic |
| TTTGATGCTGGCTCCACCGG+TGG | 0.551526 | 8.4:+29845798 | None:intergenic |
| ATAATGAACAGGAAAAGTAT+TGG | 0.552749 | 8.4:+29849940 | None:intergenic |
| CGTCAGTACCTCCACTCGGA+TGG | 0.553041 | 8.4:-29847572 | MS.gene012130:CDS |
| TGGACCGCAGAGTGTCCAAA+AGG | 0.554538 | 8.4:+29851490 | None:intergenic |
| GACACAGGTTCGAGATCATA+GGG | 0.555465 | 8.4:-29846212 | MS.gene012130:intron |
| CAGCACCATGATGCTGTGAC+TGG | 0.559394 | 8.4:-29848662 | MS.gene012130:CDS |
| AAACCATATCATGTGGACAA+TGG | 0.561179 | 8.4:-29849405 | MS.gene012130:CDS |
| TGTTGCCTTGATAACTCTTG+AGG | 0.563454 | 8.4:-29845167 | MS.gene012130:intron |
| CAATCTTGGGATTTATACAA+AGG | 0.564764 | 8.4:-29845857 | MS.gene012130:CDS |
| ACAAAATCTGAAGTGCTGAC+AGG | 0.566375 | 8.4:+29844494 | None:intergenic |
| CCACACTCCCATGATGATGT+TGG | 0.566834 | 8.4:-29852623 | MS.gene012130:CDS |
| TACTGATATAGTCAGAATAC+CGG | 0.567873 | 8.4:-29847836 | MS.gene012130:intron |
| CGATGATGGAGTAGGAAAAG+AGG | 0.568194 | 8.4:-29846392 | MS.gene012130:CDS |
| TGAAATACAGTATGTGGATG+TGG | 0.569154 | 8.4:-29847688 | MS.gene012130:CDS |
| CGATATGTTCGGATTCTAAG+TGG | 0.570160 | 8.4:-29848890 | MS.gene012130:CDS |
| CAACTGATGACTATGCGAAA+CGG | 0.570786 | 8.4:-29848622 | MS.gene012130:CDS |
| AAAATGCCGCAAACCAGTTG+TGG | 0.570790 | 8.4:-29849091 | MS.gene012130:CDS |
| CTTGTGGTGAAAGATTCATC+TGG | 0.570942 | 8.4:-29847720 | MS.gene012130:CDS |
| AGCAAATATGGTCACAAACA+AGG | 0.571309 | 8.4:-29846353 | MS.gene012130:CDS |
| ATTTCTCATAGGTATGCTGA+TGG | 0.571547 | 8.4:-29848962 | MS.gene012130:intron |
| CAGTGCCAGTCACAGCATCA+TGG | 0.573116 | 8.4:+29848657 | None:intergenic |
| GGACTACCCCTTACTGCTTG+AGG | 0.573385 | 8.4:+29844515 | None:intergenic |
| TTTGTTCTACCCACCATCGA+TGG | 0.574017 | 8.4:+29852145 | None:intergenic |
| TCTGTTTGGATCCTTCTGAA+GGG | 0.574391 | 8.4:+29852391 | None:intergenic |
| ATTACCAAATCTTTAGCCTG+TGG | 0.575869 | 8.4:+29848122 | None:intergenic |
| GATTTGTATTCAGGTAGTTG+TGG | 0.577810 | 8.4:-29847884 | MS.gene012130:intron |
| CTACTTAAGGCGCTTGATCG+AGG | 0.577909 | 8.4:-29845671 | MS.gene012130:intron |
| GTTCATTATAGTGCTCCACA+TGG | 0.578573 | 8.4:-29849926 | MS.gene012130:CDS |
| GCATACACAAAGTACAACAC+TGG | 0.578770 | 8.4:-29852686 | MS.gene012130:CDS |
| TTTCCTACTCCATCATCGGT+AGG | 0.579151 | 8.4:+29846397 | None:intergenic |
| GGTCAATCATGTCTATGTAG+TGG | 0.580668 | 8.4:+29851584 | None:intergenic |
| TGAGAACATTGACATCGGAC+CGG | 0.580861 | 8.4:-29847392 | MS.gene012130:CDS |
| TTAGTTGATCGTGCCACCGG+TGG | 0.582532 | 8.4:-29845811 | MS.gene012130:CDS |
| TCGTGGACCGCTAGTTGATG+AGG | 0.582635 | 8.4:-29846767 | MS.gene012130:CDS |
| TGCATATATATTCCGTCCAA+GGG | 0.585152 | 8.4:-29847048 | MS.gene012130:CDS |
| ACTCCCATGATGATGTTGGT+TGG | 0.586522 | 8.4:-29852619 | MS.gene012130:CDS |
| ATACAACCCCTCGTGCTGGT+TGG | 0.587540 | 8.4:-29851522 | MS.gene012130:CDS |
| CGGTGTATTCAATTTCAGCA+TGG | 0.588569 | 8.4:+29846540 | None:intergenic |
| GGTCCACGAATTACCTTGAA+GGG | 0.588939 | 8.4:+29846781 | None:intergenic |
| CAGAAATGAAGAAAATGACA+TGG | 0.589555 | 8.4:-29844565 | MS.gene012130:CDS |
| AAGTCCTCTCATTTAACCAA+AGG | 0.591439 | 8.4:-29845226 | MS.gene012130:CDS |
| GTTATCAAGGCAACATTAGG+AGG | 0.593368 | 8.4:+29845175 | None:intergenic |
| AATGAAGAAAATGACATGGA+AGG | 0.594578 | 8.4:-29844561 | MS.gene012130:CDS |
| GAATGCTGTCTTCTGTTGGA+GGG | 0.595701 | 8.4:+29848144 | None:intergenic |
| AACAGAAGACAGCATTCCAC+AGG | 0.598348 | 8.4:-29848138 | MS.gene012130:CDS |
| AAGCCAACCAACATCATCAT+GGG | 0.600163 | 8.4:+29852616 | None:intergenic |
| ACATTGGAATCAAATAAAAG+AGG | 0.600165 | 8.4:+29849761 | None:intergenic |
| CATCCGTTTGAGTTGTCCAG+AGG | 0.600303 | 8.4:+29847342 | None:intergenic |
| TATATAGGAATCCACAACGT+TGG | 0.600365 | 8.4:-29845435 | MS.gene012130:CDS |
| CCTCATATAGATGTGCCAAA+CGG | 0.601534 | 8.4:+29845049 | None:intergenic |
| TTTAGGTATGGCTCTAGTGA+GGG | 0.603408 | 8.4:-29847179 | MS.gene012130:CDS |
| ATGCAAACTTGTTCATCGAG+TGG | 0.604106 | 8.4:+29845625 | None:intergenic |
| TGAACAAGTTTGCATAGCAA+AGG | 0.606055 | 8.4:-29845617 | MS.gene012130:CDS |
| CTTATTGGCTTTCACACACG+AGG | 0.608767 | 8.4:-29845361 | MS.gene012130:intron |
| TGCAGCAGCTAAAGTCCTTG+TGG | 0.611198 | 8.4:+29852766 | None:intergenic |
| TCTTGAAATAATAGTTGGAG+AGG | 0.615123 | 8.4:+29847022 | None:intergenic |
| CAAGAACCTCAAGCAGTAAG+GGG | 0.615364 | 8.4:-29844521 | MS.gene012130:CDS |
| TCCTCACGGGAAGTAGTCAT+CGG | 0.616305 | 8.4:+29849058 | None:intergenic |
| ATTCCTACCGATGATGGAGT+AGG | 0.617402 | 8.4:-29846400 | MS.gene012130:CDS |
| TGATGACTATGCGAAACGGT+TGG | 0.617647 | 8.4:-29848618 | MS.gene012130:CDS |
| TGGAAGGTTGAAGGGGACAA+AGG | 0.622912 | 8.4:-29844545 | MS.gene012130:CDS |
| AAGTGCTAAACATTGATCAC+CGG | 0.623215 | 8.4:+29848420 | None:intergenic |
| AGGAAAGTACGTATTTCCAT+AGG | 0.623538 | 8.4:+29844458 | None:intergenic |
| AATAGATGGAGTAGAATACA+AGG | 0.623885 | 8.4:+29849127 | None:intergenic |
| TTGGAGAGGATTCCCTTGGA+CGG | 0.624569 | 8.4:+29847036 | None:intergenic |
| CAGCATCAAAGACGGTGAAG+TGG | 0.630999 | 8.4:-29845785 | MS.gene012130:CDS |
| CAAGCGTCAGTACCTCCACT+CGG | 0.634116 | 8.4:-29847576 | MS.gene012130:CDS |
| GTGTATGCACGATGAAGCCA+CGG | 0.634772 | 8.4:-29851608 | MS.gene012130:CDS |
| AGGTTACCTACTTGGTGCTG+AGG | 0.635243 | 8.4:-29851467 | MS.gene012130:intron |
| TAGGTTACTAGGCTGTACAA+AGG | 0.638409 | 8.4:-29846569 | MS.gene012130:CDS |
| TCAATCTGCCAACCAGCACG+AGG | 0.638439 | 8.4:+29851514 | None:intergenic |
| TTACACGAATTCTAGCTGAC+CGG | 0.638530 | 8.4:+29852083 | None:intergenic |
| AATGACATGGAAGGTTGAAG+GGG | 0.640209 | 8.4:-29844552 | MS.gene012130:CDS |
| TGTGTGAAAGCCAATAAGAC+TGG | 0.640370 | 8.4:+29845366 | None:intergenic |
| GGTGGAGCCAGCATCAAAGA+CGG | 0.641636 | 8.4:-29845793 | MS.gene012130:CDS |
| AGGCGCTTGATCGAGGACGA+CGG | 0.642101 | 8.4:-29845664 | MS.gene012130:CDS |
| CCAACATCATCATGGGAGTG+TGG | 0.645741 | 8.4:+29852623 | None:intergenic |
| CGAGGACAAACCATATCATG+TGG | 0.647700 | 8.4:-29849412 | MS.gene012130:CDS |
| TAAGTGCTCCATCCGAGTGG+AGG | 0.649027 | 8.4:+29847564 | None:intergenic |
| AATCTGCCAACCAGCACGAG+GGG | 0.650265 | 8.4:+29851516 | None:intergenic |
| GGTTAATGAAGCTAATCTTG+TGG | 0.650521 | 8.4:-29847736 | MS.gene012130:CDS |
| GTGTCGGCAGAAATGGTGGT+TGG | 0.656017 | 8.4:-29851630 | MS.gene012130:intron |
| GGACGACGGTAGAGGAGTAG+GGG | 0.657442 | 8.4:-29845650 | MS.gene012130:CDS |
| TGATGTGTCGGCAGAAATGG+TGG | 0.661957 | 8.4:-29851634 | MS.gene012130:intron |
| CAATTCCTAGAGCATCTCCA+AGG | 0.662980 | 8.4:+29848687 | None:intergenic |
| CAATCTGCCAACCAGCACGA+GGG | 0.663990 | 8.4:+29851515 | None:intergenic |
| AGCATGTGTTGAGAATGTGT+TGG | 0.668971 | 8.4:-29852429 | MS.gene012130:CDS |
| TACTGACCTCAGCACCAAGT+AGG | 0.673591 | 8.4:+29851461 | None:intergenic |
| CATGTCTATGTAGTGGACCG+TGG | 0.674129 | 8.4:+29851591 | None:intergenic |
| ACTTCAAAGTTGAAACCATG+TGG | 0.684452 | 8.4:+29849911 | None:intergenic |
| AAGTAAGTGCTCCATCCGAG+TGG | 0.685230 | 8.4:+29847561 | None:intergenic |
| TGATGAACCTCATCAACTAG+CGG | 0.689176 | 8.4:+29846760 | None:intergenic |
| TATTATAGGCGAATGTGACG+AGG | 0.698266 | 8.4:-29849430 | MS.gene012130:intron |
| CATTGGAAATGAGAACCACA+AGG | 0.706159 | 8.4:-29852781 | None:intergenic |
| ACGTTGGATCTGGTTCACGC+TGG | 0.707577 | 8.4:-29845419 | MS.gene012130:CDS |
| TCAGTACGATTCCATCCAAG+GGG | 0.708516 | 8.4:+29847853 | None:intergenic |
| GTGAACCAGATCCAACGTTG+TGG | 0.709101 | 8.4:+29845424 | None:intergenic |
| AATGGTGAGAACATTGACAT+CGG | 0.709922 | 8.4:-29847397 | MS.gene012130:CDS |
| CATATCGCTTTAAGGCCGGG+CGG | 0.789083 | 8.4:+29848906 | None:intergenic |
| CAGTACGATTCCATCCAAGG+GGG | 0.799229 | 8.4:+29847854 | None:intergenic |
| ATACACAAAGTACAACACTG+GGG | 0.860179 | 8.4:-29852684 | MS.gene012130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29844445 | 29852795 | 29844445 | ID=MS.gene012130 |
| chr8.4 | mRNA | 29844445 | 29852795 | 29844445 | ID=MS.gene012130.t1;Parent=MS.gene012130 |
| chr8.4 | exon | 29852571 | 29852795 | 29852571 | ID=MS.gene012130.t1.exon1;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29852571 | 29852795 | 29852571 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29852370 | 29852453 | 29852370 | ID=MS.gene012130.t1.exon2;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29852370 | 29852453 | 29852370 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29852087 | 29852175 | 29852087 | ID=MS.gene012130.t1.exon3;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29852087 | 29852175 | 29852087 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29851468 | 29851642 | 29851468 | ID=MS.gene012130.t1.exon4;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29851468 | 29851642 | 29851468 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29849886 | 29850089 | 29849886 | ID=MS.gene012130.t1.exon5;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29849886 | 29850089 | 29849886 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29849718 | 29849789 | 29849718 | ID=MS.gene012130.t1.exon6;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29849718 | 29849789 | 29849718 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29849331 | 29849444 | 29849331 | ID=MS.gene012130.t1.exon7;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29849331 | 29849444 | 29849331 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29849065 | 29849165 | 29849065 | ID=MS.gene012130.t1.exon8;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29849065 | 29849165 | 29849065 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29848880 | 29848973 | 29848880 | ID=MS.gene012130.t1.exon9;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29848880 | 29848973 | 29848880 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29848601 | 29848768 | 29848601 | ID=MS.gene012130.t1.exon10;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29848601 | 29848768 | 29848601 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29848402 | 29848491 | 29848402 | ID=MS.gene012130.t1.exon11;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29848402 | 29848491 | 29848402 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29848127 | 29848192 | 29848127 | ID=MS.gene012130.t1.exon12;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29848127 | 29848192 | 29848127 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29847837 | 29847893 | 29847837 | ID=MS.gene012130.t1.exon13;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29847837 | 29847893 | 29847837 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29847538 | 29847757 | 29847538 | ID=MS.gene012130.t1.exon14;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29847538 | 29847757 | 29847538 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29847324 | 29847460 | 29847324 | ID=MS.gene012130.t1.exon15;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29847324 | 29847460 | 29847324 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29847160 | 29847228 | 29847160 | ID=MS.gene012130.t1.exon16;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29847160 | 29847228 | 29847160 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29847019 | 29847078 | 29847019 | ID=MS.gene012130.t1.exon17;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29847019 | 29847078 | 29847019 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29846735 | 29846806 | 29846735 | ID=MS.gene012130.t1.exon18;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29846735 | 29846806 | 29846735 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29846541 | 29846588 | 29846541 | ID=MS.gene012130.t1.exon19;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29846541 | 29846588 | 29846541 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29846312 | 29846431 | 29846312 | ID=MS.gene012130.t1.exon20;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29846312 | 29846431 | 29846312 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29846162 | 29846227 | 29846162 | ID=MS.gene012130.t1.exon21;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29846162 | 29846227 | 29846162 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29845769 | 29845881 | 29845769 | ID=MS.gene012130.t1.exon22;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29845769 | 29845881 | 29845769 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29845585 | 29845684 | 29845585 | ID=MS.gene012130.t1.exon23;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29845585 | 29845684 | 29845585 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29845362 | 29845472 | 29845362 | ID=MS.gene012130.t1.exon24;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29845362 | 29845472 | 29845362 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29845168 | 29845263 | 29845168 | ID=MS.gene012130.t1.exon25;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29845168 | 29845263 | 29845168 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29845050 | 29845097 | 29845050 | ID=MS.gene012130.t1.exon26;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29845050 | 29845097 | 29845050 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29844718 | 29844786 | 29844718 | ID=MS.gene012130.t1.exon27;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29844718 | 29844786 | 29844718 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| chr8.4 | exon | 29844445 | 29844633 | 29844445 | ID=MS.gene012130.t1.exon28;Parent=MS.gene012130.t1 |
| chr8.4 | CDS | 29844445 | 29844633 | 29844445 | ID=cds.MS.gene012130.t1;Parent=MS.gene012130.t1 |
| Gene Sequence |
| Protein sequence |
