Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065392.t1 | XP_003624501.2 | 97.9 | 1016 | 20 | 1 | 1 | 1015 | 46 | 1061 | 0.00E+00 | 2014.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065392.t1 | Q8LPJ3 | 70.7 | 1017 | 279 | 9 | 1 | 1006 | 3 | 1011 | 0.0e+00 | 1465.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065392.t1 | G7KX95 | 97.9 | 1016 | 20 | 1 | 1 | 1015 | 46 | 1061 | 0.0e+00 | 2014.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene065392 | 0.808751 | 2.65E-50 | -1.69E-46 |
| MS.gene049979 | MS.gene065392 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene050438 | MS.gene065392 | 0.824719 | 6.93E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene065392 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene065392 | 0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene065392 | 0.801976 | 6.98E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene065392 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene052254 | MS.gene065392 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene065392 | 0.832871 | 7.38E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene065392 | 0.806153 | 9.45E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene065392 | 0.811717 | 6.09E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene065392 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene065392 | 0.826634 | 2.44E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene065392 | 0.809502 | 1.83E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene065392 | 0.820471 | 6.74E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene065392 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene065392 | 0.81538 | 9.52E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene065392 | 0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene065392 | -0.829772 | 4.27E-55 | -1.69E-46 |
| MS.gene056584 | MS.gene065392 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene065392 | 0.808716 | 2.70E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene065392 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene065392 | 0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene065392 | 0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene065392 | 0.820754 | 5.80E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene065392 | 0.802968 | 4.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065392 | MS.gene011927 | PPI |
| MS.gene072503 | MS.gene065392 | PPI |
| MS.gene89676 | MS.gene065392 | PPI |
| MS.gene035233 | MS.gene065392 | PPI |
| MS.gene065392 | MS.gene76352 | PPI |
| MS.gene73389 | MS.gene065392 | PPI |
| MS.gene065392 | MS.gene041467 | PPI |
| MS.gene065392 | MS.gene012130 | PPI |
| MS.gene065392 | MS.gene065393 | PPI |
| MS.gene065392 | MS.gene000897 | PPI |
| MS.gene28495 | MS.gene065392 | PPI |
| MS.gene017617 | MS.gene065392 | PPI |
| MS.gene033715 | MS.gene065392 | PPI |
| MS.gene23123 | MS.gene065392 | PPI |
| MS.gene065392 | MS.gene44227 | PPI |
| MS.gene065392 | MS.gene024280 | PPI |
| MS.gene050912 | MS.gene065392 | PPI |
| MS.gene065392 | MS.gene036585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065392.t1 | MTR_7g084030 | 97.933 | 1016 | 20 | 1 | 1 | 1015 | 46 | 1061 | 0.0 | 2070 |
| MS.gene065392.t1 | MTR_7g084030 | 97.651 | 809 | 19 | 0 | 1 | 809 | 1 | 809 | 0.0 | 1657 |
| MS.gene065392.t1 | MTR_3g098650 | 71.271 | 999 | 278 | 4 | 14 | 1005 | 18 | 1014 | 0.0 | 1500 |
| MS.gene065392.t1 | MTR_7g084040 | 68.856 | 1005 | 307 | 3 | 6 | 1006 | 6 | 1008 | 0.0 | 1454 |
| MS.gene065392.t1 | MTR_8g075330 | 60.396 | 1010 | 386 | 8 | 6 | 1005 | 13 | 1018 | 0.0 | 1265 |
| MS.gene065392.t1 | MTR_6g008850 | 28.263 | 881 | 474 | 25 | 36 | 819 | 138 | 957 | 1.26e-79 | 283 |
| MS.gene065392.t1 | MTR_4g071680 | 27.242 | 881 | 470 | 26 | 36 | 819 | 138 | 944 | 4.17e-69 | 251 |
| MS.gene065392.t1 | MTR_3g013720 | 79.592 | 49 | 10 | 0 | 48 | 96 | 11 | 59 | 1.26e-20 | 87.0 |
| MS.gene065392.t1 | MTR_2g066850 | 65.152 | 66 | 19 | 1 | 808 | 869 | 447 | 512 | 9.51e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065392.t1 | AT5G13980 | 70.698 | 1017 | 279 | 9 | 1 | 1006 | 3 | 1011 | 0.0 | 1508 |
| MS.gene065392.t1 | AT5G13980 | 70.698 | 1017 | 279 | 9 | 1 | 1006 | 3 | 1011 | 0.0 | 1508 |
| MS.gene065392.t1 | AT3G26720 | 65.907 | 1009 | 336 | 6 | 1 | 1006 | 1 | 1004 | 0.0 | 1413 |
| MS.gene065392.t1 | AT5G13980 | 71.413 | 927 | 249 | 8 | 1 | 919 | 3 | 921 | 0.0 | 1397 |
| MS.gene065392.t1 | AT3G26720 | 65.514 | 954 | 322 | 5 | 1 | 951 | 1 | 950 | 0.0 | 1335 |
| MS.gene065392.t1 | AT3G26720 | 65.926 | 945 | 315 | 5 | 1 | 942 | 1 | 941 | 0.0 | 1330 |
| MS.gene065392.t1 | AT3G26720 | 66.089 | 923 | 306 | 5 | 1 | 920 | 1 | 919 | 0.0 | 1306 |
| MS.gene065392.t1 | AT3G26720 | 66.089 | 923 | 306 | 5 | 1 | 920 | 1 | 919 | 0.0 | 1305 |
| MS.gene065392.t1 | AT5G66150 | 58.566 | 1004 | 393 | 6 | 23 | 1005 | 33 | 1034 | 0.0 | 1221 |
| MS.gene065392.t1 | AT5G66150 | 58.607 | 1005 | 392 | 7 | 23 | 1005 | 33 | 1035 | 0.0 | 1219 |
| MS.gene065392.t1 | AT5G66150 | 56.258 | 743 | 301 | 7 | 285 | 1005 | 1 | 741 | 0.0 | 852 |
| MS.gene065392.t1 | AT5G14950 | 26.524 | 886 | 486 | 26 | 36 | 819 | 152 | 974 | 1.14e-69 | 254 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTATGTCAAGGCATATT+TGG | 0.161062 | 7.4:+23097755 | MS.gene065392:CDS |
| CTGAATTACCTTTACTATTC+AGG | 0.167164 | 7.4:+23098299 | MS.gene065392:CDS |
| AGCTCCACAGTTAGCTCTTT+TGG | 0.172212 | 7.4:-23107495 | None:intergenic |
| TGCTGTGCAGGCTTATTTAT+TGG | 0.204774 | 7.4:+23094653 | MS.gene065392:CDS |
| GTTTCTTGCATTAACATAAT+TGG | 0.217083 | 7.4:-23098083 | None:intergenic |
| ATTAATGAGTGGCTATTATT+TGG | 0.217723 | 7.4:+23096281 | MS.gene065392:CDS |
| CAGATCGTGCAAATGGTTTC+TGG | 0.225600 | 7.4:+23096214 | MS.gene065392:CDS |
| ACTTGTTGAAACTTTGTAAC+TGG | 0.229637 | 7.4:-23096714 | None:intergenic |
| CACTCGGATTTCAACTACTA+TGG | 0.233395 | 7.4:+23104210 | MS.gene065392:CDS |
| TTCTATGGTTCATGCTCTAT+TGG | 0.267475 | 7.4:+23093788 | MS.gene065392:CDS |
| GTTGAATCAACATCGGTTAC+TGG | 0.283082 | 7.4:+23096681 | MS.gene065392:CDS |
| CATTGTTATTATAACATTAC+AGG | 0.284184 | 7.4:+23106177 | MS.gene065392:CDS |
| TGGTTCCAACAATTCTATTC+AGG | 0.292291 | 7.4:+23093653 | MS.gene065392:CDS |
| GCTGTGCAGGCTTATTTATT+GGG | 0.295067 | 7.4:+23094654 | MS.gene065392:CDS |
| TCGTAGTTTACCTTCTTTCC+TGG | 0.296348 | 7.4:-23106703 | None:intergenic |
| GTTACTACTATCAAAGTAAA+TGG | 0.302432 | 7.4:-23107544 | None:intergenic |
| TCAGCTAATGAGTCTGTATT+TGG | 0.303542 | 7.4:-23096439 | None:intergenic |
| TCAATTTGCCAACCAATTCT+TGG | 0.320808 | 7.4:-23094615 | None:intergenic |
| GCAAAATGTGTTGGATTCTA+TGG | 0.320839 | 7.4:+23093773 | MS.gene065392:CDS |
| GTGTTCTTCCAGATCTTTGC+TGG | 0.324479 | 7.4:+23095013 | MS.gene065392:intron |
| TAAGACAGAATTCTCAGTTT+TGG | 0.326220 | 7.4:+23104854 | MS.gene065392:CDS |
| ACCAGTTCAACTTCTGTTGC+AGG | 0.327123 | 7.4:-23096963 | None:intergenic |
| AGACTTGTTTGGAAAGTAGA+AGG | 0.327254 | 7.4:+23107429 | MS.gene065392:CDS |
| GCTAAATGGCGCCGTACTTT+TGG | 0.328700 | 7.4:+23105943 | MS.gene065392:CDS |
| GAAGTGCACCAGCCCGTTGC+TGG | 0.334798 | 7.4:+23104533 | MS.gene065392:CDS |
| CTCTGTGCAGGCAGAGGAAC+TGG | 0.344974 | 7.4:+23096635 | MS.gene065392:intron |
| ACCTCACAGGGTGTAGTCTC+TGG | 0.347973 | 7.4:+23093555 | MS.gene065392:CDS |
| CTTATAAGATGTGTTCCATT+TGG | 0.349662 | 7.4:-23098471 | None:intergenic |
| TGGAGAAGAAAAGACTTGTT+TGG | 0.356314 | 7.4:+23107418 | MS.gene065392:CDS |
| TATTATGTCAAGGCATATTT+GGG | 0.360581 | 7.4:+23097756 | MS.gene065392:CDS |
| GAGAACTATGAACCTCCTTC+TGG | 0.360730 | 7.4:+23095046 | MS.gene065392:CDS |
| GTTAAGCAGCTTGTTAGTTC+GGG | 0.360901 | 7.4:+23094335 | MS.gene065392:CDS |
| TCAGTTTCTGTACCACCATT+TGG | 0.361418 | 7.4:+23097819 | MS.gene065392:CDS |
| AGATAGGAATAAACGCAAAA+AGG | 0.361623 | 7.4:+23094805 | MS.gene065392:CDS |
| AGTTAAGCAGCTTGTTAGTT+CGG | 0.361974 | 7.4:+23094334 | MS.gene065392:CDS |
| AGAAGAGTCTTGAGGTTATC+TGG | 0.364575 | 7.4:+23094828 | MS.gene065392:CDS |
| TTACCAACTCCATCTTCAAT+AGG | 0.369060 | 7.4:-23104178 | None:intergenic |
| CGAACTCCTCTTTCAGAAAT+CGG | 0.375393 | 7.4:-23094584 | None:intergenic |
| TTGTCCTTTCAGATTAATCT+TGG | 0.387749 | 7.4:+23104813 | MS.gene065392:intron |
| TTCGATTTGACTCCAAGAAT+TGG | 0.390690 | 7.4:+23094603 | MS.gene065392:CDS |
| TGAAAATGCAAGCCAATACT+TGG | 0.393326 | 7.4:-23097799 | None:intergenic |
| ACTGGTTCAAGGAAAGAGTT+TGG | 0.394703 | 7.4:+23096980 | MS.gene065392:CDS |
| AATCAATCCATGGATATATC+AGG | 0.397775 | 7.4:+23098639 | MS.gene065392:CDS |
| AATGACCTGAATAGAATTGT+TGG | 0.398399 | 7.4:-23093658 | None:intergenic |
| ATTGTGGTTTATAACTCTCT+TGG | 0.398651 | 7.4:+23097115 | MS.gene065392:CDS |
| CTTTGGGTGAGGGAGCTAAA+TGG | 0.399736 | 7.4:+23105929 | MS.gene065392:CDS |
| TTCGTCATCACTGGCTTGCT+TGG | 0.400499 | 7.4:+23096659 | MS.gene065392:CDS |
| TGGGAAGCTCAATGTTCATC+TGG | 0.400751 | 7.4:+23093575 | MS.gene065392:CDS |
| CTCTATTGGCTGATAAGAAC+AGG | 0.401356 | 7.4:+23093802 | MS.gene065392:CDS |
| TTCTATAATAATATTTCCCT+TGG | 0.402828 | 7.4:-23105900 | None:intergenic |
| TGAATTACCTTTACTATTCA+GGG | 0.412178 | 7.4:+23098300 | MS.gene065392:CDS |
| GTAGGATCGATTACCAAGAT+AGG | 0.415011 | 7.4:+23094789 | MS.gene065392:CDS |
| CTTCAAATTTCCTTGACCTA+TGG | 0.416316 | 7.4:-23098029 | None:intergenic |
| AAAGTGGAGAATATATTTCC+TGG | 0.425358 | 7.4:-23105966 | None:intergenic |
| CTTTACTATTCAGGGTATAA+CGG | 0.429029 | 7.4:+23098308 | MS.gene065392:CDS |
| GTTTGGACATTCTGCTGTGC+AGG | 0.429270 | 7.4:+23094641 | MS.gene065392:CDS |
| GGTTGGCAAATTGACCCGTT+TGG | 0.434705 | 7.4:+23094624 | MS.gene065392:CDS |
| GAAGGAGGTTCATAGTTCTC+AGG | 0.436622 | 7.4:-23095043 | None:intergenic |
| CTGGAAATGGAGGTGTTTCA+AGG | 0.438959 | 7.4:+23107457 | MS.gene065392:CDS |
| TTATTATAGAATAGACCCTT+TGG | 0.439735 | 7.4:+23105912 | MS.gene065392:CDS |
| AATCACATTATGTGGACAAT+GGG | 0.443770 | 7.4:+23095793 | MS.gene065392:CDS |
| GTAGAAGGGTCCTCTGGAAA+TGG | 0.445460 | 7.4:+23107444 | MS.gene065392:CDS |
| CGTAGTTTACCTTCTTTCCT+GGG | 0.446870 | 7.4:-23106702 | None:intergenic |
| TCCTGCAACAGAAGTTGAAC+TGG | 0.448308 | 7.4:+23096962 | MS.gene065392:CDS |
| GGGTAATAATTTCCAGCAAC+GGG | 0.449669 | 7.4:-23104545 | None:intergenic |
| TATGCTAAACGATTGGCAAT+AGG | 0.452324 | 7.4:+23096529 | MS.gene065392:CDS |
| ACTCCATCTTCAATAGGTAT+AGG | 0.454189 | 7.4:-23104172 | None:intergenic |
| TATTATAGAATAGACCCTTT+GGG | 0.458271 | 7.4:+23105913 | MS.gene065392:CDS |
| AAACATTTGCAGGTTATTGA+TGG | 0.459153 | 7.4:+23097648 | MS.gene065392:intron |
| GCTTATATCTTCCGTCCAAA+TGG | 0.464533 | 7.4:+23098456 | MS.gene065392:CDS |
| CATAAAAGAGAATTCCCAAA+AGG | 0.468108 | 7.4:-23093503 | None:intergenic |
| TAATTTCTGTAACAGAATGC+TGG | 0.468169 | 7.4:+23098432 | MS.gene065392:intron |
| TTTCCATATTCAGGTTATTG+TGG | 0.471363 | 7.4:+23097099 | MS.gene065392:intron |
| TGTCCTTTCAGATTAATCTT+GGG | 0.474577 | 7.4:+23104814 | MS.gene065392:intron |
| ATAACTCTCTTGGTTGGAAG+AGG | 0.474966 | 7.4:+23097125 | MS.gene065392:CDS |
| AGTTATTCAGATCGTGCAAA+TGG | 0.477887 | 7.4:+23096207 | MS.gene065392:intron |
| TGATGCATTTCATCTAGTAT+TGG | 0.478642 | 7.4:-23098613 | None:intergenic |
| CATCCAAGACACCCAAGTAT+TGG | 0.478995 | 7.4:+23097787 | MS.gene065392:CDS |
| GGAACTGGTTTCGTCATCAC+TGG | 0.480083 | 7.4:+23096650 | MS.gene065392:CDS |
| CTTGTTGAAACTTTGTAACT+GGG | 0.480817 | 7.4:-23096713 | None:intergenic |
| TCCTTTCAGGAACTTGATCA+AGG | 0.483430 | 7.4:+23106427 | MS.gene065392:intron |
| AGAATCTCAAATTCTACCTC+TGG | 0.484241 | 7.4:+23097707 | MS.gene065392:CDS |
| AACTGTGGAGCTTGCTCCAA+TGG | 0.484793 | 7.4:+23107506 | MS.gene065392:CDS |
| CGTGCAAATGGTTTCTGGAC+AGG | 0.485426 | 7.4:+23096219 | MS.gene065392:CDS |
| GAGCCTCGGTTCATCTGCTC+AGG | 0.488230 | 7.4:+23094862 | MS.gene065392:CDS |
| AAGAAATCGTCAGTCTTGAT+TGG | 0.489756 | 7.4:-23096083 | None:intergenic |
| ACAGAAGTTGAACTGGTTCA+AGG | 0.495501 | 7.4:+23096969 | MS.gene065392:CDS |
| CTGACATAGCGTTTCAAAGC+TGG | 0.497109 | 7.4:-23096258 | None:intergenic |
| GCGTTTCAAAGCTGGTCTAC+TGG | 0.497765 | 7.4:-23096250 | None:intergenic |
| GTAAAAGTGCGGATTTCCAT+TGG | 0.501131 | 7.4:-23107522 | None:intergenic |
| GATTTGCCCATCTTCTAAGC+TGG | 0.501303 | 7.4:-23104898 | None:intergenic |
| TTTAGAGGGCGAAAGAACTC+AGG | 0.501312 | 7.4:+23096415 | MS.gene065392:CDS |
| TACCAGACAGTACAAAGAAA+AGG | 0.505652 | 7.4:+23103937 | MS.gene065392:CDS |
| AATAATTTCCAGCAACGGGC+TGG | 0.505914 | 7.4:-23104541 | None:intergenic |
| AGAATAGACCCTTTGGGTGA+GGG | 0.506802 | 7.4:+23105919 | MS.gene065392:CDS |
| ATCCTGAAAATGTTGTTACA+TGG | 0.508095 | 7.4:-23106126 | None:intergenic |
| CTACAGAACAGACTGGGACT+TGG | 0.508692 | 7.4:+23104511 | MS.gene065392:CDS |
| CTGTGCCGGTGACTGCATCA+TGG | 0.509159 | 7.4:-23096483 | None:intergenic |
| TAGAATAGACCCTTTGGGTG+AGG | 0.510130 | 7.4:+23105918 | MS.gene065392:CDS |
| AAGTGTATAAACTGATGATC+TGG | 0.510611 | 7.4:-23097987 | None:intergenic |
| CAATACTTGGGTGTCTTGGA+TGG | 0.512823 | 7.4:-23097786 | None:intergenic |
| GAACAGGAAATTTATCTATG+TGG | 0.515196 | 7.4:+23093818 | MS.gene065392:CDS |
| GGTGTTATACTCTATAAACT+TGG | 0.516701 | 7.4:-23093535 | None:intergenic |
| CTCGGACAAATCACATTATG+TGG | 0.518821 | 7.4:+23095785 | MS.gene065392:CDS |
| TGCACAGCAGAATGTCCAAA+CGG | 0.521779 | 7.4:-23094639 | None:intergenic |
| TCGGAAAAGGCTAACAAAAG+TGG | 0.525918 | 7.4:-23105982 | None:intergenic |
| CGTTATACCCTGAATAGTAA+AGG | 0.531274 | 7.4:-23098307 | None:intergenic |
| AAGCCAATACTTGGGTGTCT+TGG | 0.535952 | 7.4:-23097790 | None:intergenic |
| TGGTTTATAACTCTCTTGGT+TGG | 0.536231 | 7.4:+23097119 | MS.gene065392:CDS |
| ATAAAAGAGAATTCCCAAAA+GGG | 0.539238 | 7.4:-23093502 | None:intergenic |
| TCTTATAAGTCATGAAAGAC+AGG | 0.539510 | 7.4:+23098485 | MS.gene065392:CDS |
| ATATTTCCTGGCCAAAAGTA+CGG | 0.540811 | 7.4:-23105954 | None:intergenic |
| CGTATAAATGCGCTAATCGA+AGG | 0.540840 | 7.4:-23106459 | None:intergenic |
| GGCTTGTGTGCAAAATGTGT+TGG | 0.541656 | 7.4:+23093764 | MS.gene065392:CDS |
| TGGAAAGTAGAAGGGTCCTC+TGG | 0.542542 | 7.4:+23107438 | MS.gene065392:CDS |
| AAATCACATTATGTGGACAA+TGG | 0.545205 | 7.4:+23095792 | MS.gene065392:CDS |
| TGGAAATGGAGGTGTTTCAA+GGG | 0.545678 | 7.4:+23107458 | MS.gene065392:CDS |
| TCCTGAAAATGTTGTTACAT+GGG | 0.545787 | 7.4:-23106125 | None:intergenic |
| TAATGATTATGCTAAACGAT+TGG | 0.546213 | 7.4:+23096522 | MS.gene065392:CDS |
| ACTGTTGATCAGTACTATGT+TGG | 0.549819 | 7.4:+23093633 | MS.gene065392:CDS |
| ATTTGACTCCAAGAATTGGT+TGG | 0.549978 | 7.4:+23094607 | MS.gene065392:CDS |
| GCTTATCTGCAAATCAAGAA+AGG | 0.550208 | 7.4:+23107388 | MS.gene065392:CDS |
| GCACAGCAGAATGTCCAAAC+GGG | 0.551546 | 7.4:-23094638 | None:intergenic |
| TGGACACCGATTTCTGAAAG+AGG | 0.552492 | 7.4:+23094578 | MS.gene065392:CDS |
| AAATCGAGTTGATGCTCCAC+AGG | 0.552903 | 7.4:+23104916 | MS.gene065392:CDS |
| ATTTAGCTCCCTCACCCAAA+GGG | 0.553112 | 7.4:-23105927 | None:intergenic |
| GGAGGATCCAGCTTAGAAGA+TGG | 0.554711 | 7.4:+23104891 | MS.gene065392:CDS |
| TGGGTAATAATTTCCAGCAA+CGG | 0.556408 | 7.4:-23104546 | None:intergenic |
| TAAGATGTGTTCCATTTGGA+CGG | 0.558123 | 7.4:-23098467 | None:intergenic |
| TCAAATTCTACCTCTGGCTG+AGG | 0.558671 | 7.4:+23097713 | MS.gene065392:CDS |
| GTGTAAGTGCTAAAACCAAA+TGG | 0.559441 | 7.4:-23097834 | None:intergenic |
| GTTCCAGTGACTGTTCTCCA+TGG | 0.560750 | 7.4:+23098589 | MS.gene065392:CDS |
| CAAAACACCTGATATATCCA+TGG | 0.563546 | 7.4:-23098646 | None:intergenic |
| TATAGAGTATAACACCTCAC+AGG | 0.564100 | 7.4:+23093542 | MS.gene065392:CDS |
| GGTCCTATACCTATTGAAGA+TGG | 0.564137 | 7.4:+23104169 | MS.gene065392:CDS |
| GGTCCATGGAGAACAGTCAC+TGG | 0.569176 | 7.4:-23098592 | None:intergenic |
| ATGATTGATCAGACTACACT+TGG | 0.569418 | 7.4:+23094558 | MS.gene065392:CDS |
| AGTATCAATACGCACATACA+TGG | 0.569841 | 7.4:+23095827 | MS.gene065392:CDS |
| AAGGAGGTTCATAGTTCTCA+GGG | 0.570158 | 7.4:-23095042 | None:intergenic |
| TGCATCAACGAATCAATCCA+TGG | 0.570967 | 7.4:+23098629 | MS.gene065392:CDS |
| TTTCATCTAGTATTGGTCCA+TGG | 0.571537 | 7.4:-23098606 | None:intergenic |
| CCTCACAGGGTGTAGTCTCT+GGG | 0.571763 | 7.4:+23093556 | MS.gene065392:CDS |
| CATTTAGCTCCCTCACCCAA+AGG | 0.572359 | 7.4:-23105928 | None:intergenic |
| ATACCTATTGAAGATGGAGT+TGG | 0.572453 | 7.4:+23104175 | MS.gene065392:CDS |
| GAGGATCCAGCTTAGAAGAT+GGG | 0.572606 | 7.4:+23104892 | MS.gene065392:CDS |
| AGTCTTGAGGTTATCTGGCA+AGG | 0.579058 | 7.4:+23094833 | MS.gene065392:CDS |
| ACGATTGGCAATAGGCTACA+AGG | 0.579394 | 7.4:+23096537 | MS.gene065392:CDS |
| AGTCATGAAAAGTCTTCCAT+AGG | 0.579693 | 7.4:+23098013 | MS.gene065392:CDS |
| GAAAAGTCTTCCATAGGTCA+AGG | 0.583359 | 7.4:+23098019 | MS.gene065392:CDS |
| GACTTGTTTGGAAAGTAGAA+GGG | 0.584116 | 7.4:+23107430 | MS.gene065392:CDS |
| GCTCATACTCATGATGATGT+TGG | 0.588207 | 7.4:+23093600 | MS.gene065392:CDS |
| CAACACCATGATGCAGTCAC+CGG | 0.591654 | 7.4:+23096478 | MS.gene065392:CDS |
| TTTGCATCTGTATATATGGA+GGG | 0.592290 | 7.4:-23096038 | None:intergenic |
| TACGTGACTACAGAACAGAC+TGG | 0.596442 | 7.4:+23104504 | MS.gene065392:CDS |
| GGTAGGATGATAAAGATGAC+TGG | 0.599141 | 7.4:+23106095 | MS.gene065392:intron |
| CCTTTCAGGAACTTGATCAA+GGG | 0.599608 | 7.4:+23106428 | MS.gene065392:intron |
| TCAGGAACTTGATCAAGGGA+CGG | 0.606166 | 7.4:+23106432 | MS.gene065392:intron |
| AAATCAAGAAAGGACAGAGA+TGG | 0.607796 | 7.4:+23107398 | MS.gene065392:CDS |
| TCTAAGAAACTATTATGTCA+AGG | 0.610906 | 7.4:+23097746 | MS.gene065392:CDS |
| ACATACATGGTACCGACAGT+TGG | 0.612842 | 7.4:+23095840 | MS.gene065392:CDS |
| TTATGTTAATGCAAGAAACA+TGG | 0.614150 | 7.4:+23098087 | MS.gene065392:CDS |
| TGTATAAACTGATGATCTGG+TGG | 0.614284 | 7.4:-23097984 | None:intergenic |
| GTATTAGATCAAAGAAGTGA+AGG | 0.615994 | 7.4:+23107359 | MS.gene065392:intron |
| AATATGCTGCAAATGAGTCA+TGG | 0.618901 | 7.4:+23096060 | MS.gene065392:CDS |
| TTGCTTGGTTGAATCAACAT+CGG | 0.621818 | 7.4:+23096674 | MS.gene065392:CDS |
| GGAAATGGAGGTGTTTCAAG+GGG | 0.622441 | 7.4:+23107459 | MS.gene065392:CDS |
| TTGCTGCTTGATGATTCTAG+AGG | 0.624603 | 7.4:+23105312 | MS.gene065392:CDS |
| CGCTATGTCAGATTAATGAG+TGG | 0.627187 | 7.4:+23096270 | MS.gene065392:CDS |
| TGGCAAGGTAGCAAGAGCCT+CGG | 0.630943 | 7.4:+23094848 | MS.gene065392:CDS |
| TCAAAGTAAAATCCAGAAGG+AGG | 0.631190 | 7.4:-23095058 | None:intergenic |
| TTAGAGGGCGAAAGAACTCA+GGG | 0.634363 | 7.4:+23096416 | MS.gene065392:CDS |
| GAAAATGCAAGCCAATACTT+GGG | 0.635413 | 7.4:-23097798 | None:intergenic |
| GAAGGGTCCTCTGGAAATGG+AGG | 0.635637 | 7.4:+23107447 | MS.gene065392:CDS |
| CAAAGTAAATGGTAAAAGTG+CGG | 0.638098 | 7.4:-23107533 | None:intergenic |
| CTGTGTTGCTGACAATTGCA+AGG | 0.641022 | 7.4:+23105362 | MS.gene065392:CDS |
| ATACTCATGATGATGTTGGA+TGG | 0.641633 | 7.4:+23093604 | MS.gene065392:CDS |
| ACTTCAAAGTAAAATCCAGA+AGG | 0.641851 | 7.4:-23095061 | None:intergenic |
| TGCACAGATCGAAGAAGACA+AGG | 0.643150 | 7.4:+23106639 | MS.gene065392:intron |
| TGAAACACCTCCATTTCCAG+AGG | 0.645145 | 7.4:-23107454 | None:intergenic |
| AATGGAGGTGTTTCAAGGGG+AGG | 0.649350 | 7.4:+23107462 | MS.gene065392:CDS |
| TGATTCTAGAGGTGTTGCAG+AGG | 0.650500 | 7.4:+23105323 | MS.gene065392:CDS |
| GAATGAGCTTGTCCAACTGT+CGG | 0.650516 | 7.4:-23095852 | None:intergenic |
| GCTCATTCATTACGTGAACA+AGG | 0.651468 | 7.4:+23095867 | MS.gene065392:CDS |
| CAATAAGTTATGTTCAAAAG+CGG | 0.652336 | 7.4:-23096939 | None:intergenic |
| TTTCCATGTCACAGAAACGG+TGG | 0.654844 | 7.4:+23094495 | MS.gene065392:intron |
| TTGGTGGATAGAGCTATAGG+AGG | 0.655512 | 7.4:+23104873 | MS.gene065392:CDS |
| ACGTGACTACAGAACAGACT+GGG | 0.657692 | 7.4:+23104505 | MS.gene065392:CDS |
| CCCAGAGACTACACCCTGTG+AGG | 0.659344 | 7.4:-23093556 | None:intergenic |
| CGGCACAGAAAAGCAGCACG+TGG | 0.665131 | 7.4:+23096498 | MS.gene065392:CDS |
| TTGGTAAAGAAGTTTCCACT+CGG | 0.667704 | 7.4:+23104194 | MS.gene065392:CDS |
| GTTACAGTTCATGACTCCAA+CGG | 0.668698 | 7.4:+23097675 | MS.gene065392:CDS |
| CATAGTAGTTGAAATCCGAG+TGG | 0.668936 | 7.4:-23104209 | None:intergenic |
| TCGATTAGCGCATTTATACG+AGG | 0.670614 | 7.4:+23106462 | MS.gene065392:CDS |
| TGTGTTGCTGACAATTGCAA+GGG | 0.677060 | 7.4:+23105363 | MS.gene065392:CDS |
| TCTACAAATACCTCAGCCAG+AGG | 0.690237 | 7.4:-23097723 | None:intergenic |
| TCTCTCTGTAGTGACAAGTG+TGG | 0.697065 | 7.4:+23106663 | MS.gene065392:CDS |
| TCACCTGAGCAGATGAACCG+AGG | 0.700248 | 7.4:-23094865 | None:intergenic |
| TGGCATGTGTATGCATGATG+AGG | 0.703361 | 7.4:+23094515 | MS.gene065392:CDS |
| ATAGAGTATAACACCTCACA+GGG | 0.705260 | 7.4:+23093543 | MS.gene065392:CDS |
| TAAGTGCTAAAACCAAATGG+TGG | 0.707183 | 7.4:-23097831 | None:intergenic |
| TGATCCAAAAGAGCTAACTG+TGG | 0.718341 | 7.4:+23107491 | MS.gene065392:CDS |
| ATTGGCAATAGGCTACAAGG+AGG | 0.782057 | 7.4:+23096540 | MS.gene065392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23093474 | 23107590 | 23093474 | ID=MS.gene065392 |
| chr7.4 | mRNA | 23093474 | 23107590 | 23093474 | ID=MS.gene065392.t1;Parent=MS.gene065392 |
| chr7.4 | exon | 23093474 | 23093674 | 23093474 | ID=MS.gene065392.t1.exon1;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23093474 | 23093674 | 23093474 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23093762 | 23093845 | 23093762 | ID=MS.gene065392.t1.exon2;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23093762 | 23093845 | 23093762 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23094284 | 23094372 | 23094284 | ID=MS.gene065392.t1.exon3;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23094284 | 23094372 | 23094284 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23094509 | 23094683 | 23094509 | ID=MS.gene065392.t1.exon4;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23094509 | 23094683 | 23094509 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23094764 | 23094883 | 23094764 | ID=MS.gene065392.t1.exon5;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23094764 | 23094883 | 23094764 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23095025 | 23095108 | 23095025 | ID=MS.gene065392.t1.exon6;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23095025 | 23095108 | 23095025 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23095197 | 23095268 | 23095197 | ID=MS.gene065392.t1.exon7;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23095197 | 23095268 | 23095197 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23095775 | 23095888 | 23095775 | ID=MS.gene065392.t1.exon8;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23095775 | 23095888 | 23095775 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23096008 | 23096108 | 23096008 | ID=MS.gene065392.t1.exon9;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23096008 | 23096108 | 23096008 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23096209 | 23096302 | 23096209 | ID=MS.gene065392.t1.exon10;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23096209 | 23096302 | 23096209 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23096394 | 23096561 | 23096394 | ID=MS.gene065392.t1.exon11;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23096394 | 23096561 | 23096394 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23096645 | 23096734 | 23096645 | ID=MS.gene065392.t1.exon12;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23096645 | 23096734 | 23096645 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23096936 | 23097001 | 23096936 | ID=MS.gene065392.t1.exon13;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23096936 | 23097001 | 23096936 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23097112 | 23097168 | 23097112 | ID=MS.gene065392.t1.exon14;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23097112 | 23097168 | 23097112 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23097660 | 23097879 | 23097660 | ID=MS.gene065392.t1.exon15;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23097660 | 23097879 | 23097660 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23097981 | 23098108 | 23097981 | ID=MS.gene065392.t1.exon16;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23097981 | 23098108 | 23097981 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23098281 | 23098352 | 23098281 | ID=MS.gene065392.t1.exon17;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23098281 | 23098352 | 23098281 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23098447 | 23098506 | 23098447 | ID=MS.gene065392.t1.exon18;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23098447 | 23098506 | 23098447 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23098589 | 23098660 | 23098589 | ID=MS.gene065392.t1.exon19;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23098589 | 23098660 | 23098589 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23103935 | 23103982 | 23103935 | ID=MS.gene065392.t1.exon20;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23103935 | 23103982 | 23103935 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23104166 | 23104285 | 23104166 | ID=MS.gene065392.t1.exon21;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23104166 | 23104285 | 23104166 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23104503 | 23104568 | 23104503 | ID=MS.gene065392.t1.exon22;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23104503 | 23104568 | 23104503 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23104825 | 23104937 | 23104825 | ID=MS.gene065392.t1.exon23;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23104825 | 23104937 | 23104825 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23105308 | 23105392 | 23105308 | ID=MS.gene065392.t1.exon24;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23105308 | 23105392 | 23105308 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23105898 | 23106008 | 23105898 | ID=MS.gene065392.t1.exon25;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23105898 | 23106008 | 23105898 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23106100 | 23106198 | 23106100 | ID=MS.gene065392.t1.exon26;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23106100 | 23106198 | 23106100 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23106436 | 23106483 | 23106436 | ID=MS.gene065392.t1.exon27;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23106436 | 23106483 | 23106436 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23106646 | 23106714 | 23106646 | ID=MS.gene065392.t1.exon28;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23106646 | 23106714 | 23106646 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| chr7.4 | exon | 23107366 | 23107590 | 23107366 | ID=MS.gene065392.t1.exon29;Parent=MS.gene065392.t1 |
| chr7.4 | CDS | 23107366 | 23107590 | 23107366 | ID=cds.MS.gene065392.t1;Parent=MS.gene065392.t1 |
| Gene Sequence |
| Protein sequence |
