Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033712.t1 | XP_003624501.2 | 98.5 | 949 | 13 | 1 | 1 | 948 | 113 | 1061 | 0.00E+00 | 1891.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033712.t1 | Q8LPJ3 | 71.3 | 949 | 255 | 8 | 2 | 939 | 69 | 1011 | 0.0e+00 | 1382.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033712.t1 | G7KX95 | 98.5 | 949 | 13 | 1 | 1 | 948 | 113 | 1061 | 0.0e+00 | 1891.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033712 | MS.gene76352 | PPI |
MS.gene033712 | MS.gene036585 | PPI |
MS.gene033712 | MS.gene011927 | PPI |
MS.gene033712 | MS.gene041467 | PPI |
MS.gene23123 | MS.gene033712 | PPI |
MS.gene033712 | MS.gene065393 | PPI |
MS.gene033712 | MS.gene000897 | PPI |
MS.gene033712 | MS.gene012130 | PPI |
MS.gene035233 | MS.gene033712 | PPI |
MS.gene033712 | MS.gene024280 | PPI |
MS.gene033712 | MS.gene73389 | PPI |
MS.gene033712 | MS.gene050912 | PPI |
MS.gene033712 | MS.gene072503 | PPI |
MS.gene033712 | MS.gene28495 | PPI |
MS.gene017617 | MS.gene033712 | PPI |
MS.gene033712 | MS.gene44227 | PPI |
MS.gene033712 | MS.gene033715 | PPI |
MS.gene033712 | MS.gene89676 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033712.t1 | MTR_7g084030 | 98.525 | 949 | 13 | 1 | 1 | 948 | 113 | 1061 | 0.0 | 1946 |
MS.gene033712.t1 | MTR_7g084030 | 98.518 | 742 | 11 | 0 | 1 | 742 | 68 | 809 | 0.0 | 1534 |
MS.gene033712.t1 | MTR_3g098650 | 71.746 | 945 | 258 | 4 | 1 | 938 | 72 | 1014 | 0.0 | 1422 |
MS.gene033712.t1 | MTR_7g084040 | 69.565 | 943 | 281 | 3 | 1 | 939 | 68 | 1008 | 0.0 | 1373 |
MS.gene033712.t1 | MTR_8g075330 | 59.662 | 947 | 369 | 7 | 1 | 938 | 76 | 1018 | 0.0 | 1174 |
MS.gene033712.t1 | MTR_6g008850 | 27.896 | 846 | 458 | 25 | 5 | 752 | 166 | 957 | 1.96e-73 | 263 |
MS.gene033712.t1 | MTR_4g071680 | 26.832 | 846 | 454 | 26 | 5 | 752 | 166 | 944 | 3.18e-63 | 233 |
MS.gene033712.t1 | MTR_2g066850 | 65.152 | 66 | 19 | 1 | 741 | 802 | 447 | 512 | 9.10e-18 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033712.t1 | AT5G13980 | 71.338 | 949 | 255 | 8 | 2 | 939 | 69 | 1011 | 0.0 | 1424 |
MS.gene033712.t1 | AT5G13980 | 71.338 | 949 | 255 | 8 | 2 | 939 | 69 | 1011 | 0.0 | 1424 |
MS.gene033712.t1 | AT3G26720 | 66.419 | 941 | 309 | 5 | 1 | 939 | 69 | 1004 | 0.0 | 1331 |
MS.gene033712.t1 | AT5G13980 | 72.177 | 859 | 225 | 7 | 2 | 852 | 69 | 921 | 0.0 | 1312 |
MS.gene033712.t1 | AT3G26720 | 66.027 | 886 | 295 | 4 | 1 | 884 | 69 | 950 | 0.0 | 1254 |
MS.gene033712.t1 | AT3G26720 | 66.591 | 877 | 287 | 4 | 1 | 875 | 69 | 941 | 0.0 | 1250 |
MS.gene033712.t1 | AT3G26720 | 66.784 | 855 | 278 | 4 | 1 | 853 | 69 | 919 | 0.0 | 1226 |
MS.gene033712.t1 | AT3G26720 | 66.784 | 855 | 278 | 4 | 1 | 853 | 69 | 919 | 0.0 | 1226 |
MS.gene033712.t1 | AT5G66150 | 57.724 | 958 | 382 | 5 | 2 | 938 | 79 | 1034 | 0.0 | 1148 |
MS.gene033712.t1 | AT5G66150 | 57.769 | 959 | 381 | 6 | 2 | 938 | 79 | 1035 | 0.0 | 1145 |
MS.gene033712.t1 | AT5G66150 | 56.124 | 743 | 302 | 6 | 218 | 938 | 1 | 741 | 0.0 | 852 |
MS.gene033712.t1 | AT5G14950 | 26.682 | 847 | 470 | 26 | 5 | 752 | 180 | 974 | 1.29e-63 | 234 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGAGTTACCTTTACTATTC+AGG | 0.192715 | 7.4:+23046867 | MS.gene033712:CDS |
GTTTCTTGCATTAACATAAT+TGG | 0.198476 | 7.4:-23046651 | None:intergenic |
ATTAATGAGTGGCTATTATT+TGG | 0.217723 | 7.4:+23045197 | MS.gene033712:CDS |
AGCTCCACAGTTAACTCTTT+TGG | 0.222849 | 7.4:-23050912 | None:intergenic |
CAGATCGTGCAAATGGTTTC+TGG | 0.225600 | 7.4:+23045130 | MS.gene033712:CDS |
TGCTGTGCAGGCTTATTTAT+TGG | 0.230637 | 7.4:+23043569 | MS.gene033712:CDS |
ACTTGTTGAAACTTTATAAC+TGG | 0.232743 | 7.4:-23045628 | None:intergenic |
CACTCGGATTTCAACTACTA+TGG | 0.233395 | 7.4:+23047612 | MS.gene033712:CDS |
CCTTGACATAGTAGTTTCTT+AGG | 0.253999 | 7.4:-23046314 | None:intergenic |
CTTTACTATTCAGGGTATAA+TGG | 0.264566 | 7.4:+23046876 | MS.gene033712:CDS |
TTCTATGGTTCATGCTCTAT+TGG | 0.267475 | 7.4:+23042704 | MS.gene033712:CDS |
GTTACTACTGTCAAAGTAAA+TGG | 0.272153 | 7.4:-23050961 | None:intergenic |
CATTTCGAACCTGTCTTTCA+TGG | 0.277535 | 7.4:-23047062 | None:intergenic |
GCTGTGCAGGCTTATTTATT+GGG | 0.280320 | 7.4:+23043570 | MS.gene033712:CDS |
CATTGTTATTATAACATTAC+AGG | 0.284184 | 7.4:+23049586 | MS.gene033712:CDS |
GTTGAATCAACATCAGTTAC+TGG | 0.292971 | 7.4:+23045595 | MS.gene033712:CDS |
TCGTAGTTTACCTTCTTTCC+TGG | 0.296348 | 7.4:-23050117 | None:intergenic |
TCAGCTAATGAGTCTGTATT+TGG | 0.303542 | 7.4:-23045355 | None:intergenic |
TCAATTTGCCAACCAATTCT+TGG | 0.320808 | 7.4:-23043531 | None:intergenic |
GCAAAATGTGTTGGATTCTA+TGG | 0.320839 | 7.4:+23042689 | MS.gene033712:CDS |
GTGTTCTTCCAGATCTTTGC+TGG | 0.324479 | 7.4:+23043929 | MS.gene033712:intron |
TACTATGTCAAGGCATATTT+AGG | 0.326890 | 7.4:+23046324 | MS.gene033712:CDS |
AGACTTGTTTGGAAAGTAGA+AGG | 0.327254 | 7.4:+23050846 | MS.gene033712:CDS |
GCTAAATGGCGCCGTACTTT+TGG | 0.328700 | 7.4:+23049352 | MS.gene033712:CDS |
GAAGTGCACCAGCCCGTTGC+TGG | 0.334798 | 7.4:+23047935 | MS.gene033712:CDS |
TGGAGAAGAAAAGACTTGTT+TGG | 0.356314 | 7.4:+23050835 | MS.gene033712:CDS |
GAGAACTATGAACCTCCTTC+TGG | 0.360730 | 7.4:+23043962 | MS.gene033712:CDS |
GTTAAGCAGCTTGTTAGTTC+GGG | 0.360901 | 7.4:+23043251 | MS.gene033712:CDS |
TCAGTTTCTGTACCACCATT+TGG | 0.361418 | 7.4:+23046387 | MS.gene033712:CDS |
AGATAGGAATAAACGCAAAA+AGG | 0.361623 | 7.4:+23043721 | MS.gene033712:CDS |
AGTTAAGCAGCTTGTTAGTT+CGG | 0.361974 | 7.4:+23043250 | MS.gene033712:CDS |
TAAGACAGAATTCTCCGTTT+TGG | 0.363313 | 7.4:+23048266 | MS.gene033712:CDS |
AGAAGAGTCTTGAGGTTATC+TGG | 0.364575 | 7.4:+23043744 | MS.gene033712:CDS |
TCCTGCATCAGAAGTTGAAT+TGG | 0.367889 | 7.4:+23045825 | MS.gene033712:CDS |
TTACCAACTCCATCTTCAAT+AGG | 0.369060 | 7.4:-23047580 | None:intergenic |
CCTTGGGTGAGGGAGCTAAA+TGG | 0.374069 | 7.4:+23049338 | MS.gene033712:CDS |
CGAACTCCTCTTTCAGAAAT+CGG | 0.375393 | 7.4:-23043500 | None:intergenic |
TTTATAAGATGTGTTCCATT+TGG | 0.376310 | 7.4:-23047039 | None:intergenic |
TTGTCCTTTCAGATTAATCT+TGG | 0.387749 | 7.4:+23048225 | MS.gene033712:intron |
CTTTGTGCAGGCAGAGGAAC+TGG | 0.389496 | 7.4:+23045549 | MS.gene033712:intron |
TTCGATTTGACTCCAAGAAT+TGG | 0.390690 | 7.4:+23043519 | MS.gene033712:CDS |
TGAAAATGCAAGCCAATACT+TGG | 0.393326 | 7.4:-23046367 | None:intergenic |
ATTGTGGTTTATAACTCTCT+TGG | 0.398651 | 7.4:+23045978 | MS.gene033712:CDS |
TTCGTCATCACTGGCTTGCT+TGG | 0.400499 | 7.4:+23045573 | MS.gene033712:CDS |
CTCTATTGGCTGATAAGAAC+AGG | 0.401356 | 7.4:+23042718 | MS.gene033712:CDS |
TTCTATAATAATATTTCCCT+TGG | 0.402828 | 7.4:-23049309 | None:intergenic |
ATTGGTTCGAGGAAAGAGTT+TGG | 0.408245 | 7.4:+23045843 | MS.gene033712:CDS |
TTTAGAGGGCGAAAGAAGTC+AGG | 0.411577 | 7.4:+23045331 | MS.gene033712:CDS |
CAATCGTTTAGCATAATCAT+TGG | 0.411610 | 7.4:-23045437 | None:intergenic |
AGTCATGAAAAGTCTTCAAT+AGG | 0.411948 | 7.4:+23046581 | MS.gene033712:CDS |
GTAGGATCGATTACCAAGAT+AGG | 0.415011 | 7.4:+23043705 | MS.gene033712:CDS |
AATCAGTCCATGGATATATC+AGG | 0.417104 | 7.4:+23047207 | MS.gene033712:CDS |
AAAGTGGAGAATATATTTCC+TGG | 0.425358 | 7.4:-23049375 | None:intergenic |
GTTTGGACATTCTGCTGTGC+AGG | 0.429270 | 7.4:+23043557 | MS.gene033712:CDS |
GGTTGGCAAATTGACCCGTT+TGG | 0.434705 | 7.4:+23043540 | MS.gene033712:CDS |
GAAGGAGGTTCATAGTTCTC+AGG | 0.436622 | 7.4:-23043959 | None:intergenic |
TGAGTTACCTTTACTATTCA+GGG | 0.438695 | 7.4:+23046868 | MS.gene033712:CDS |
CTGGAAATGGAGGTGTTTCA+AGG | 0.438959 | 7.4:+23050874 | MS.gene033712:CDS |
AATCACATTATGTGGACAAT+GGG | 0.443770 | 7.4:+23044709 | MS.gene033712:CDS |
GTAGAAGGGTCCTCTGGAAA+TGG | 0.445460 | 7.4:+23050861 | MS.gene033712:CDS |
CGTAGTTTACCTTCTTTCCT+GGG | 0.446870 | 7.4:-23050116 | None:intergenic |
GGGTAATAATTTCCAGCAAC+GGG | 0.449669 | 7.4:-23047947 | None:intergenic |
TATGCTAAACGATTGGCAAT+AGG | 0.452324 | 7.4:+23045445 | MS.gene033712:CDS |
ACTCCATCTTCAATAGGTAT+AGG | 0.454189 | 7.4:-23047574 | None:intergenic |
AAACATTTGCAGGTTATTGA+TGG | 0.459153 | 7.4:+23046216 | MS.gene033712:intron |
GCTTATATCTTCCGTCCAAA+TGG | 0.464533 | 7.4:+23047024 | MS.gene033712:CDS |
TAATTTCTGTAACAGAATGC+TGG | 0.468169 | 7.4:+23047000 | MS.gene033712:intron |
TTTCCATATTCAGGTTATTG+TGG | 0.471363 | 7.4:+23045962 | MS.gene033712:intron |
TGTCCTTTCAGATTAATCTT+GGG | 0.474577 | 7.4:+23048226 | MS.gene033712:intron |
ATAACTCTCTTGGTTGGAAG+AGG | 0.474966 | 7.4:+23045988 | MS.gene033712:CDS |
AGTTATTCAGATCGTGCAAA+TGG | 0.477887 | 7.4:+23045123 | MS.gene033712:intron |
CATCCAAGACACCCAAGTAT+TGG | 0.478995 | 7.4:+23046355 | MS.gene033712:CDS |
GGAACTGGTTTCGTCATCAC+TGG | 0.480083 | 7.4:+23045564 | MS.gene033712:CDS |
CTTGTTGAAACTTTATAACT+GGG | 0.480817 | 7.4:-23045627 | None:intergenic |
TCCTTTCAGGAACTTGATCA+AGG | 0.483430 | 7.4:+23049841 | MS.gene033712:intron |
AGAATCTCAAATTCTACCTC+TGG | 0.484241 | 7.4:+23046275 | MS.gene033712:CDS |
CGTGCAAATGGTTTCTGGAC+AGG | 0.485426 | 7.4:+23045135 | MS.gene033712:CDS |
GAGCCTCGGTTCATCTGCTC+AGG | 0.488230 | 7.4:+23043778 | MS.gene033712:CDS |
GATTTGTCCATCTTCTAAGC+TGG | 0.488233 | 7.4:-23048310 | None:intergenic |
AGATTCTATTTCTACACCGT+TGG | 0.493375 | 7.4:-23046259 | None:intergenic |
CTGACATAGCGTTTCAAAGC+TGG | 0.497109 | 7.4:-23045174 | None:intergenic |
CCATTTAGCTCCCTCACCCA+AGG | 0.497452 | 7.4:-23049338 | None:intergenic |
GCGTTTCAAAGCTGGTCTAC+TGG | 0.497765 | 7.4:-23045166 | None:intergenic |
GTAAAAGTGCGGATTTCCAT+TGG | 0.501131 | 7.4:-23050939 | None:intergenic |
TACCAGACAGTACAAAGAAA+AGG | 0.505652 | 7.4:+23047340 | MS.gene033712:CDS |
AATAATTTCCAGCAACGGGC+TGG | 0.505914 | 7.4:-23047943 | None:intergenic |
AACTGTGGAGCTTGCTCCAA+TGG | 0.506887 | 7.4:+23050923 | MS.gene033712:CDS |
ATCCTGAAAATGTTGTTACA+TGG | 0.508095 | 7.4:-23049535 | None:intergenic |
CTACAGAACAGACTGGGACT+TGG | 0.508692 | 7.4:+23047913 | MS.gene033712:CDS |
CTGTGCCGGTGACTGCATCA+TGG | 0.509159 | 7.4:-23045399 | None:intergenic |
AAGTGTATAAACTGATGATC+TGG | 0.510611 | 7.4:-23046555 | None:intergenic |
CAATACTTGGGTGTCTTGGA+TGG | 0.512823 | 7.4:-23046354 | None:intergenic |
GAACAGGAAATTTATCTATG+TGG | 0.515196 | 7.4:+23042734 | MS.gene033712:CDS |
CTCGGACAAATCACATTATG+TGG | 0.518821 | 7.4:+23044701 | MS.gene033712:CDS |
TGCACAGCAGAATGTCCAAA+CGG | 0.521779 | 7.4:-23043555 | None:intergenic |
ACCAATTCAACTTCTGATGC+AGG | 0.522885 | 7.4:-23045826 | None:intergenic |
TGATGCACTTCATCTAGTAT+TGG | 0.525893 | 7.4:-23047181 | None:intergenic |
TCGGAAAAGGCTAACAAAAG+TGG | 0.525918 | 7.4:-23049391 | None:intergenic |
TATTATAGAATAGACCCCTT+GGG | 0.533906 | 7.4:+23049322 | MS.gene033712:CDS |
TAGAATAGACCCCTTGGGTG+AGG | 0.534403 | 7.4:+23049327 | MS.gene033712:CDS |
AAGCCAATACTTGGGTGTCT+TGG | 0.535952 | 7.4:-23046358 | None:intergenic |
TGGTTTATAACTCTCTTGGT+TGG | 0.536231 | 7.4:+23045982 | MS.gene033712:CDS |
CATTTAGCTCCCTCACCCAA+GGG | 0.538619 | 7.4:-23049337 | None:intergenic |
CATTATACCCTGAATAGTAA+AGG | 0.540784 | 7.4:-23046875 | None:intergenic |
ATATTTCCTGGCCAAAAGTA+CGG | 0.540811 | 7.4:-23049363 | None:intergenic |
CGTATAAATGCGCTAATCGA+AGG | 0.540840 | 7.4:-23049873 | None:intergenic |
GGCTTGTGTGCAAAATGTGT+TGG | 0.541656 | 7.4:+23042680 | MS.gene033712:CDS |
TCAGAAGTTGAATTGGTTCG+AGG | 0.541864 | 7.4:+23045832 | MS.gene033712:CDS |
GTGTAAGTGCTAAAACCAAA+TGG | 0.542048 | 7.4:-23046402 | None:intergenic |
TGGAAAGTAGAAGGGTCCTC+TGG | 0.542542 | 7.4:+23050855 | MS.gene033712:CDS |
AAATCACATTATGTGGACAA+TGG | 0.545205 | 7.4:+23044708 | MS.gene033712:CDS |
TGGAAATGGAGGTGTTTCAA+GGG | 0.545678 | 7.4:+23050875 | MS.gene033712:CDS |
TCCTGAAAATGTTGTTACAT+GGG | 0.545787 | 7.4:-23049534 | None:intergenic |
ATTTGACTCCAAGAATTGGT+TGG | 0.549978 | 7.4:+23043523 | MS.gene033712:CDS |
GCTTATCTGCAAATCAAGAA+AGG | 0.550208 | 7.4:+23050805 | MS.gene033712:CDS |
GCACAGCAGAATGTCCAAAC+GGG | 0.551546 | 7.4:-23043554 | None:intergenic |
TGGACACCGATTTCTGAAAG+AGG | 0.552492 | 7.4:+23043494 | MS.gene033712:CDS |
TCTTATAAACCATGAAAGAC+AGG | 0.555377 | 7.4:+23047053 | MS.gene033712:CDS |
TGGGTAATAATTTCCAGCAA+CGG | 0.556408 | 7.4:-23047948 | None:intergenic |
AAGAAATCGTCAGTCTTGAC+TGG | 0.557536 | 7.4:-23044999 | None:intergenic |
TAAGATGTGTTCCATTTGGA+CGG | 0.558123 | 7.4:-23047035 | None:intergenic |
TCAAATTCTACCTCTGGCTG+AGG | 0.558671 | 7.4:+23046281 | MS.gene033712:CDS |
CAATGATTATGCTAAACGAT+TGG | 0.559018 | 7.4:+23045438 | MS.gene033712:CDS |
GTTCCAGTGACTGTTCTCCA+TGG | 0.560750 | 7.4:+23047157 | MS.gene033712:CDS |
TTATTATAGAATAGACCCCT+TGG | 0.561110 | 7.4:+23049321 | MS.gene033712:CDS |
GGTCCTATACCTATTGAAGA+TGG | 0.564137 | 7.4:+23047571 | MS.gene033712:CDS |
AAATCGAGTTGATGCTCCAC+AGG | 0.565718 | 7.4:+23048328 | MS.gene033712:CDS |
GGAGGATCCAGCTTAGAAGA+TGG | 0.568313 | 7.4:+23048303 | MS.gene033712:CDS |
GGTCCATGGAGAACAGTCAC+TGG | 0.569176 | 7.4:-23047160 | None:intergenic |
ATGATTGATCAGACTACACT+TGG | 0.569418 | 7.4:+23043474 | MS.gene033712:CDS |
AAGGAGGTTCATAGTTCTCA+GGG | 0.570158 | 7.4:-23043958 | None:intergenic |
ATACCTATTGAAGATGGAGT+TGG | 0.572453 | 7.4:+23047577 | MS.gene033712:CDS |
AGAATAGACCCCTTGGGTGA+GGG | 0.574887 | 7.4:+23049328 | MS.gene033712:CDS |
AGTCTTGAGGTTATCTGGCA+AGG | 0.579058 | 7.4:+23043749 | MS.gene033712:CDS |
ACGATTGGCAATAGGCTACA+AGG | 0.579394 | 7.4:+23045453 | MS.gene033712:CDS |
GAAAAGTCTTCAATAGGTCA+AGG | 0.580083 | 7.4:+23046587 | MS.gene033712:CDS |
GACTTGTTTGGAAAGTAGAA+GGG | 0.584116 | 7.4:+23050847 | MS.gene033712:CDS |
CAACACCATGATGCAGTCAC+CGG | 0.591654 | 7.4:+23045394 | MS.gene033712:CDS |
TGCATCAACGAATCAGTCCA+TGG | 0.592263 | 7.4:+23047197 | MS.gene033712:CDS |
TTTGCATCTGTATATATGGA+GGG | 0.592290 | 7.4:-23044954 | None:intergenic |
CTTCATCTAGTATTGGTCCA+TGG | 0.596258 | 7.4:-23047174 | None:intergenic |
TACGTGACTACAGAACAGAC+TGG | 0.596442 | 7.4:+23047906 | MS.gene033712:CDS |
TATAGCTCTATCCACCAAAA+CGG | 0.596879 | 7.4:-23048280 | None:intergenic |
GGTAGGATGATAAAGATGAC+TGG | 0.599141 | 7.4:+23049504 | MS.gene033712:intron |
CCTTTCAGGAACTTGATCAA+GGG | 0.599608 | 7.4:+23049842 | MS.gene033712:intron |
CAAAGCACCTGATATATCCA+TGG | 0.601939 | 7.4:-23047214 | None:intergenic |
GGTATTAGATCAAAGAAGTG+AGG | 0.605616 | 7.4:+23050775 | MS.gene033712:intron |
TCAGGAACTTGATCAAGGGA+CGG | 0.606166 | 7.4:+23049846 | MS.gene033712:intron |
AAATCAAGAAAGGACAGAGA+TGG | 0.607796 | 7.4:+23050815 | MS.gene033712:CDS |
TTATGTTAATGCAAGAAACA+TGG | 0.614150 | 7.4:+23046655 | MS.gene033712:CDS |
TGTATAAACTGATGATCTGG+TGG | 0.614284 | 7.4:-23046552 | None:intergenic |
CCTAAGAAACTACTATGTCA+AGG | 0.616978 | 7.4:+23046314 | MS.gene033712:CDS |
AATATGCTGCAAATGAGTCA+TGG | 0.618901 | 7.4:+23044976 | MS.gene033712:CDS |
AGTATCAATATGCACATACA+TGG | 0.619070 | 7.4:+23044743 | MS.gene033712:CDS |
GTATTAGATCAAAGAAGTGA+GGG | 0.621648 | 7.4:+23050776 | MS.gene033712:intron |
GGAAATGGAGGTGTTTCAAG+GGG | 0.622441 | 7.4:+23050876 | MS.gene033712:CDS |
TTGCTGCTTGATGATTCTAG+AGG | 0.624603 | 7.4:+23048720 | MS.gene033712:CDS |
CGCTATGTCAGATTAATGAG+TGG | 0.627187 | 7.4:+23045186 | MS.gene033712:CDS |
ACATACATGGTACCGACAGT+TGG | 0.628854 | 7.4:+23044756 | MS.gene033712:CDS |
TGGCAAGGTAGCAAGAGCCT+CGG | 0.630943 | 7.4:+23043764 | MS.gene033712:CDS |
TCAAAGTAAAATCCAGAAGG+AGG | 0.631190 | 7.4:-23043974 | None:intergenic |
GAAAATGCAAGCCAATACTT+GGG | 0.635413 | 7.4:-23046366 | None:intergenic |
GAAGGGTCCTCTGGAAATGG+AGG | 0.635637 | 7.4:+23050864 | MS.gene033712:CDS |
TTAGAGGGCGAAAGAAGTCA+GGG | 0.638730 | 7.4:+23045332 | MS.gene033712:CDS |
CAAAGTAAATGGTAAAAGTG+CGG | 0.640298 | 7.4:-23050950 | None:intergenic |
CTGTGTTGCTGACAATTGCA+AGG | 0.641022 | 7.4:+23048770 | MS.gene033712:CDS |
ACTTCAAAGTAAAATCCAGA+AGG | 0.641851 | 7.4:-23043977 | None:intergenic |
TGCACAGATCGAAGAAGACA+AGG | 0.643150 | 7.4:+23050053 | MS.gene033712:intron |
TGAAACACCTCCATTTCCAG+AGG | 0.645145 | 7.4:-23050871 | None:intergenic |
AATGGAGGTGTTTCAAGGGG+AGG | 0.649350 | 7.4:+23050879 | MS.gene033712:CDS |
GAATGAGCTTGTCCAACTGT+CGG | 0.650516 | 7.4:-23044768 | None:intergenic |
GCTCATTCATTACGTGAACA+AGG | 0.651468 | 7.4:+23044783 | MS.gene033712:CDS |
CAATAAGTTATGTTCAAAAG+CGG | 0.652336 | 7.4:-23045802 | None:intergenic |
TTTCCATGTCACAGAAACGG+TGG | 0.654844 | 7.4:+23043411 | MS.gene033712:intron |
CGGCACAGAAAAGCAGCATG+TGG | 0.655410 | 7.4:+23045414 | MS.gene033712:CDS |
TTGGTGGATAGAGCTATAGG+AGG | 0.655512 | 7.4:+23048285 | MS.gene033712:CDS |
ACGTGACTACAGAACAGACT+GGG | 0.657692 | 7.4:+23047907 | MS.gene033712:CDS |
TGATTCTAGAGGTGTTGCAG+AGG | 0.660259 | 7.4:+23048731 | MS.gene033712:CDS |
GTCACAGTTCATGACTCCAA+CGG | 0.662876 | 7.4:+23046243 | MS.gene033712:CDS |
TTGGTAAAGAAGTTTCCACT+CGG | 0.667704 | 7.4:+23047596 | MS.gene033712:CDS |
CATAGTAGTTGAAATCCGAG+TGG | 0.668936 | 7.4:-23047611 | None:intergenic |
TCGATTAGCGCATTTATACG+AGG | 0.670614 | 7.4:+23049876 | MS.gene033712:CDS |
TGTGTTGCTGACAATTGCAA+GGG | 0.677060 | 7.4:+23048771 | MS.gene033712:CDS |
ATTTAGCTCCCTCACCCAAG+GGG | 0.678054 | 7.4:-23049336 | None:intergenic |
TCTACAAATACCTCAGCCAG+AGG | 0.690237 | 7.4:-23046291 | None:intergenic |
TCACCTGAGCAGATGAACCG+AGG | 0.691260 | 7.4:-23043781 | None:intergenic |
TCTCTCTGTAGTGACAAGTG+TGG | 0.697065 | 7.4:+23050077 | MS.gene033712:CDS |
TGGCATGTGTATGCATGATG+AGG | 0.703361 | 7.4:+23043431 | MS.gene033712:CDS |
TGATCCAAAAGAGTTAACTG+TGG | 0.703430 | 7.4:+23050908 | MS.gene033712:CDS |
TAAGTGCTAAAACCAAATGG+TGG | 0.707183 | 7.4:-23046399 | None:intergenic |
ATTGGCAATAGGCTACAAGG+AGG | 0.782057 | 7.4:+23045456 | MS.gene033712:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 23042678 | 23051004 | 23042678 | ID=MS.gene033712 |
chr7.4 | mRNA | 23042678 | 23051004 | 23042678 | ID=MS.gene033712.t1;Parent=MS.gene033712 |
chr7.4 | exon | 23042678 | 23042761 | 23042678 | ID=MS.gene033712.t1.exon1;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23042678 | 23042761 | 23042678 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23043200 | 23043288 | 23043200 | ID=MS.gene033712.t1.exon2;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23043200 | 23043288 | 23043200 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23043425 | 23043599 | 23043425 | ID=MS.gene033712.t1.exon3;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23043425 | 23043599 | 23043425 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23043680 | 23043799 | 23043680 | ID=MS.gene033712.t1.exon4;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23043680 | 23043799 | 23043680 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23043941 | 23044024 | 23043941 | ID=MS.gene033712.t1.exon5;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23043941 | 23044024 | 23043941 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23044115 | 23044186 | 23044115 | ID=MS.gene033712.t1.exon6;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23044115 | 23044186 | 23044115 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23044691 | 23044804 | 23044691 | ID=MS.gene033712.t1.exon7;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23044691 | 23044804 | 23044691 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23044924 | 23045024 | 23044924 | ID=MS.gene033712.t1.exon8;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23044924 | 23045024 | 23044924 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23045125 | 23045218 | 23045125 | ID=MS.gene033712.t1.exon9;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23045125 | 23045218 | 23045125 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23045310 | 23045477 | 23045310 | ID=MS.gene033712.t1.exon10;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23045310 | 23045477 | 23045310 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23045559 | 23045648 | 23045559 | ID=MS.gene033712.t1.exon11;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23045559 | 23045648 | 23045559 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23045799 | 23045864 | 23045799 | ID=MS.gene033712.t1.exon12;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23045799 | 23045864 | 23045799 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23045975 | 23046031 | 23045975 | ID=MS.gene033712.t1.exon13;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23045975 | 23046031 | 23045975 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23046228 | 23046447 | 23046228 | ID=MS.gene033712.t1.exon14;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23046228 | 23046447 | 23046228 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23046549 | 23046676 | 23046549 | ID=MS.gene033712.t1.exon15;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23046549 | 23046676 | 23046549 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23046849 | 23046920 | 23046849 | ID=MS.gene033712.t1.exon16;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23046849 | 23046920 | 23046849 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23047015 | 23047074 | 23047015 | ID=MS.gene033712.t1.exon17;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23047015 | 23047074 | 23047015 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23047157 | 23047228 | 23047157 | ID=MS.gene033712.t1.exon18;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23047157 | 23047228 | 23047157 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23047338 | 23047385 | 23047338 | ID=MS.gene033712.t1.exon19;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23047338 | 23047385 | 23047338 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23047568 | 23047687 | 23047568 | ID=MS.gene033712.t1.exon20;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23047568 | 23047687 | 23047568 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23047905 | 23047970 | 23047905 | ID=MS.gene033712.t1.exon21;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23047905 | 23047970 | 23047905 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23048237 | 23048349 | 23048237 | ID=MS.gene033712.t1.exon22;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23048237 | 23048349 | 23048237 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23048716 | 23048800 | 23048716 | ID=MS.gene033712.t1.exon23;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23048716 | 23048800 | 23048716 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23049307 | 23049417 | 23049307 | ID=MS.gene033712.t1.exon24;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23049307 | 23049417 | 23049307 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23049509 | 23049607 | 23049509 | ID=MS.gene033712.t1.exon25;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23049509 | 23049607 | 23049509 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23049850 | 23049897 | 23049850 | ID=MS.gene033712.t1.exon26;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23049850 | 23049897 | 23049850 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23050060 | 23050128 | 23050060 | ID=MS.gene033712.t1.exon27;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23050060 | 23050128 | 23050060 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
chr7.4 | exon | 23050783 | 23051004 | 23050783 | ID=MS.gene033712.t1.exon28;Parent=MS.gene033712.t1 |
chr7.4 | CDS | 23050783 | 23051004 | 23050783 | ID=cds.MS.gene033712.t1;Parent=MS.gene033712.t1 |
Gene Sequence |
Protein sequence |