Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024279.t1 | XP_003624501.2 | 97.8 | 1016 | 21 | 1 | 1 | 1015 | 46 | 1061 | 0.00E+00 | 2013.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024279.t1 | Q8LPJ3 | 70.9 | 1017 | 277 | 9 | 1 | 1006 | 3 | 1011 | 0.0e+00 | 1467.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024279.t1 | G7KX95 | 97.8 | 1016 | 21 | 1 | 1 | 1015 | 46 | 1061 | 0.0e+00 | 2013.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072503 | MS.gene024279 | PPI |
| MS.gene024279 | MS.gene011927 | PPI |
| MS.gene035233 | MS.gene024279 | PPI |
| MS.gene036585 | MS.gene024279 | PPI |
| MS.gene024279 | MS.gene76352 | PPI |
| MS.gene024279 | MS.gene041467 | PPI |
| MS.gene89676 | MS.gene024279 | PPI |
| MS.gene024279 | MS.gene065393 | PPI |
| MS.gene28495 | MS.gene024279 | PPI |
| MS.gene73389 | MS.gene024279 | PPI |
| MS.gene017617 | MS.gene024279 | PPI |
| MS.gene033715 | MS.gene024279 | PPI |
| MS.gene000897 | MS.gene024279 | PPI |
| MS.gene024279 | MS.gene012130 | PPI |
| MS.gene23123 | MS.gene024279 | PPI |
| MS.gene024279 | MS.gene44227 | PPI |
| MS.gene024280 | MS.gene024279 | PPI |
| MS.gene050912 | MS.gene024279 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024279.t1 | MTR_7g084030 | 97.835 | 1016 | 21 | 1 | 1 | 1015 | 46 | 1061 | 0.0 | 2067 |
| MS.gene024279.t1 | MTR_7g084030 | 97.651 | 809 | 19 | 0 | 1 | 809 | 1 | 809 | 0.0 | 1655 |
| MS.gene024279.t1 | MTR_3g098650 | 71.572 | 999 | 275 | 4 | 14 | 1005 | 18 | 1014 | 0.0 | 1502 |
| MS.gene024279.t1 | MTR_7g084040 | 69.055 | 1005 | 305 | 3 | 6 | 1006 | 6 | 1008 | 0.0 | 1455 |
| MS.gene024279.t1 | MTR_8g075330 | 60.495 | 1010 | 385 | 8 | 6 | 1005 | 13 | 1018 | 0.0 | 1267 |
| MS.gene024279.t1 | MTR_6g008850 | 28.377 | 881 | 473 | 25 | 36 | 819 | 138 | 957 | 2.48e-80 | 285 |
| MS.gene024279.t1 | MTR_4g071680 | 27.355 | 881 | 469 | 26 | 36 | 819 | 138 | 944 | 8.84e-70 | 254 |
| MS.gene024279.t1 | MTR_3g013720 | 79.592 | 49 | 10 | 0 | 48 | 96 | 11 | 59 | 1.26e-20 | 87.0 |
| MS.gene024279.t1 | MTR_2g066850 | 65.152 | 66 | 19 | 1 | 808 | 869 | 447 | 512 | 9.66e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024279.t1 | AT5G13980 | 70.895 | 1017 | 277 | 9 | 1 | 1006 | 3 | 1011 | 0.0 | 1510 |
| MS.gene024279.t1 | AT5G13980 | 70.895 | 1017 | 277 | 9 | 1 | 1006 | 3 | 1011 | 0.0 | 1510 |
| MS.gene024279.t1 | AT3G26720 | 66.105 | 1009 | 334 | 6 | 1 | 1006 | 1 | 1004 | 0.0 | 1415 |
| MS.gene024279.t1 | AT5G13980 | 71.629 | 927 | 247 | 8 | 1 | 919 | 3 | 921 | 0.0 | 1398 |
| MS.gene024279.t1 | AT3G26720 | 66.034 | 948 | 315 | 5 | 1 | 945 | 1 | 944 | 0.0 | 1337 |
| MS.gene024279.t1 | AT3G26720 | 66.243 | 945 | 312 | 5 | 1 | 942 | 1 | 941 | 0.0 | 1334 |
| MS.gene024279.t1 | AT3G26720 | 66.414 | 923 | 303 | 5 | 1 | 920 | 1 | 919 | 0.0 | 1310 |
| MS.gene024279.t1 | AT3G26720 | 66.414 | 923 | 303 | 5 | 1 | 920 | 1 | 919 | 0.0 | 1308 |
| MS.gene024279.t1 | AT5G66150 | 58.466 | 1004 | 394 | 6 | 23 | 1005 | 33 | 1034 | 0.0 | 1222 |
| MS.gene024279.t1 | AT5G66150 | 58.507 | 1005 | 393 | 7 | 23 | 1005 | 33 | 1035 | 0.0 | 1220 |
| MS.gene024279.t1 | AT5G66150 | 56.258 | 743 | 301 | 7 | 285 | 1005 | 1 | 741 | 0.0 | 853 |
| MS.gene024279.t1 | AT5G14950 | 26.644 | 882 | 490 | 25 | 36 | 819 | 152 | 974 | 6.76e-70 | 254 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTATGTCAAGGCATATT+TGG | 0.161062 | 7.3:+24555679 | MS.gene024279:CDS |
| CTGAATTACCTTTACTATTC+AGG | 0.167164 | 7.3:+24556223 | MS.gene024279:CDS |
| GTTTCTTGCATTAACATAAT+TGG | 0.217083 | 7.3:-24556007 | None:intergenic |
| ATTAATGAGTGGCTATTATT+TGG | 0.217723 | 7.3:+24554204 | MS.gene024279:CDS |
| AGCTCCACAGTTAACTCTTT+TGG | 0.222849 | 7.3:-24560526 | None:intergenic |
| CAGATCGTGCAAATGGTTTC+TGG | 0.225600 | 7.3:+24554137 | MS.gene024279:CDS |
| ACTTGTTGAAACTTTGTAAC+TGG | 0.229637 | 7.3:-24554637 | None:intergenic |
| TGCTGTGCAGGCTTATTTAT+TGG | 0.230637 | 7.3:+24552575 | MS.gene024279:CDS |
| CACTCGGATTTCAACTACTA+TGG | 0.233395 | 7.3:+24556967 | MS.gene024279:CDS |
| TTCTATGGTTCATGCTCTAT+TGG | 0.267475 | 7.3:+24551710 | MS.gene024279:CDS |
| GTTACTACTGTCAAAGTAAA+TGG | 0.272153 | 7.3:-24560575 | None:intergenic |
| GCTGTGCAGGCTTATTTATT+GGG | 0.280320 | 7.3:+24552576 | MS.gene024279:CDS |
| GTTGAATCAACATCGGTTAC+TGG | 0.283082 | 7.3:+24554604 | MS.gene024279:CDS |
| CATTGTTATTATAACATTAC+AGG | 0.284184 | 7.3:+24558934 | MS.gene024279:CDS |
| TGGTTCCAACAATTCTATTC+AGG | 0.292291 | 7.3:+24551575 | MS.gene024279:CDS |
| TCGTAGTCTACCTTCTTTCC+TGG | 0.303055 | 7.3:-24559460 | None:intergenic |
| TCAGCTAATGAGTCTGTATT+TGG | 0.303542 | 7.3:-24554362 | None:intergenic |
| GTTAAGCAGCTTGTTAGTTC+TGG | 0.309694 | 7.3:+24552257 | MS.gene024279:CDS |
| TCAATTTGCCAACCAATTCT+TGG | 0.320808 | 7.3:-24552537 | None:intergenic |
| GCAAAATGTGTTGGATTCTA+TGG | 0.320839 | 7.3:+24551695 | MS.gene024279:CDS |
| GTGTTCTTCCAGATCTTTGC+TGG | 0.324479 | 7.3:+24552935 | MS.gene024279:intron |
| CTCTGTGCAGGCAGAGAAAC+TGG | 0.325387 | 7.3:+24554558 | MS.gene024279:intron |
| TAAGACAGAATTCTCAGTTT+TGG | 0.326220 | 7.3:+24557611 | MS.gene024279:CDS |
| ACCAGTTCAACTTCTGTTGC+AGG | 0.327123 | 7.3:-24554886 | None:intergenic |
| AGACTTGTTTGGAAAGTAGA+AGG | 0.327254 | 7.3:+24560460 | MS.gene024279:CDS |
| GCTAAATGGCGCCGTACTTT+TGG | 0.328700 | 7.3:+24558700 | MS.gene024279:CDS |
| GAAGTGCACCAGCCCGTTGC+TGG | 0.334798 | 7.3:+24557290 | MS.gene024279:CDS |
| CTTATAAGATGTGTTCCATT+TGG | 0.349662 | 7.3:-24556395 | None:intergenic |
| ACATCACAGGGCATAGTCTC+TGG | 0.353245 | 7.3:+24551477 | MS.gene024279:CDS |
| TGGAGAAGAAAAGACTTGTT+TGG | 0.356314 | 7.3:+24560449 | MS.gene024279:CDS |
| TATTATGTCAAGGCATATTT+GGG | 0.360581 | 7.3:+24555680 | MS.gene024279:CDS |
| GAGAACTATGAACCTCCTTC+TGG | 0.360730 | 7.3:+24552968 | MS.gene024279:CDS |
| TCAGTTTCTGTACCACCATT+TGG | 0.361418 | 7.3:+24555743 | MS.gene024279:CDS |
| AGATAGGAATAAACGCAAAA+AGG | 0.361623 | 7.3:+24552727 | MS.gene024279:CDS |
| AGAAGAGTCTTGAGGTTATC+TGG | 0.364575 | 7.3:+24552750 | MS.gene024279:CDS |
| TTACCAACTCCATCTTCAAT+AGG | 0.369060 | 7.3:-24556935 | None:intergenic |
| CGAACTCCTCTTTCAGAAAT+CGG | 0.375393 | 7.3:-24552506 | None:intergenic |
| TTGTCCTTTCAGATTAATCT+TGG | 0.387749 | 7.3:+24557570 | MS.gene024279:intron |
| TTCGATTTGACTCCAAGAAT+TGG | 0.390690 | 7.3:+24552525 | MS.gene024279:CDS |
| TGAAAATGCAAGCCAATACT+TGG | 0.393326 | 7.3:-24555723 | None:intergenic |
| ACTGGTTCAAGGAAAGAGTT+TGG | 0.394703 | 7.3:+24554903 | MS.gene024279:CDS |
| AATCAATCCATGGATATATC+AGG | 0.397775 | 7.3:+24556563 | MS.gene024279:CDS |
| AATGACCTGAATAGAATTGT+TGG | 0.398399 | 7.3:-24551580 | None:intergenic |
| ATTGTGGTTTATAACTCTCT+TGG | 0.398651 | 7.3:+24555038 | MS.gene024279:CDS |
| CTTTGGGTGAGGGAGCTAAA+TGG | 0.399736 | 7.3:+24558686 | MS.gene024279:CDS |
| TTCGTCATCACTGGCTTGCT+TGG | 0.400499 | 7.3:+24554582 | MS.gene024279:CDS |
| CTCTATTGGCTGATAAGAAC+AGG | 0.401356 | 7.3:+24551724 | MS.gene024279:CDS |
| TTCTATAATAATATTTCCCT+TGG | 0.402828 | 7.3:-24558657 | None:intergenic |
| TGAATTACCTTTACTATTCA+GGG | 0.412178 | 7.3:+24556224 | MS.gene024279:CDS |
| GTAGGATCGATTACCAAGAT+AGG | 0.415011 | 7.3:+24552711 | MS.gene024279:CDS |
| CTTCAAATTTCCTTGACCTA+TGG | 0.416316 | 7.3:-24555953 | None:intergenic |
| AAAGTGGAGAATATATTTCC+TGG | 0.425358 | 7.3:-24558723 | None:intergenic |
| CTTTACTATTCAGGGTATAA+CGG | 0.429029 | 7.3:+24556232 | MS.gene024279:CDS |
| GTTTGGACATTCTGCTGTGC+AGG | 0.429270 | 7.3:+24552563 | MS.gene024279:CDS |
| GGTTGGCAAATTGACCCGTT+TGG | 0.434705 | 7.3:+24552546 | MS.gene024279:CDS |
| GAAGGAGGTTCATAGTTCTC+AGG | 0.436622 | 7.3:-24552965 | None:intergenic |
| CTGGAAATGGAGGTGTTTCA+AGG | 0.438959 | 7.3:+24560488 | MS.gene024279:CDS |
| TTATTATAGAATAGACCCTT+TGG | 0.439735 | 7.3:+24558669 | MS.gene024279:CDS |
| TGGGAAGCTCAATGTTCATC+TGG | 0.439829 | 7.3:+24551497 | MS.gene024279:CDS |
| AATCACATTATGTGGACAAT+GGG | 0.443770 | 7.3:+24553716 | MS.gene024279:CDS |
| GTAGAAGGGTCCTCTGGAAA+TGG | 0.445460 | 7.3:+24560475 | MS.gene024279:CDS |
| TCCTGCAACAGAAGTTGAAC+TGG | 0.448308 | 7.3:+24554885 | MS.gene024279:CDS |
| GGGTAATAATTTCCAGCAAC+GGG | 0.449669 | 7.3:-24557302 | None:intergenic |
| TATGCTAAACGATTGGCAAT+AGG | 0.452324 | 7.3:+24554452 | MS.gene024279:CDS |
| ACTCCATCTTCAATAGGTAT+AGG | 0.454189 | 7.3:-24556929 | None:intergenic |
| TATTATAGAATAGACCCTTT+GGG | 0.458271 | 7.3:+24558670 | MS.gene024279:CDS |
| AAACATTTGCAGGTTATTGA+TGG | 0.459153 | 7.3:+24555572 | MS.gene024279:intron |
| GCTTATATCTTCCGTCCAAA+TGG | 0.464533 | 7.3:+24556380 | MS.gene024279:CDS |
| CATAAAAGAGAATTCCCAAA+AGG | 0.468108 | 7.3:-24551425 | None:intergenic |
| TAATTTCTGTAACAGAATGC+TGG | 0.468169 | 7.3:+24556356 | MS.gene024279:intron |
| TTTCCATATTCAGGTTATTG+TGG | 0.471363 | 7.3:+24555022 | MS.gene024279:intron |
| TGTCCTTTCAGATTAATCTT+GGG | 0.474577 | 7.3:+24557571 | MS.gene024279:intron |
| ATAACTCTCTTGGTTGGAAG+AGG | 0.474966 | 7.3:+24555048 | MS.gene024279:CDS |
| AGTTATTCAGATCGTGCAAA+TGG | 0.477887 | 7.3:+24554130 | MS.gene024279:intron |
| CATCCAAGACACCCAAGTAT+TGG | 0.478995 | 7.3:+24555711 | MS.gene024279:CDS |
| GAAACTGGTTTCGTCATCAC+TGG | 0.479807 | 7.3:+24554573 | MS.gene024279:CDS |
| CTTGTTGAAACTTTGTAACT+GGG | 0.480817 | 7.3:-24554636 | None:intergenic |
| TCCTTTCAGGAACTTGATCA+AGG | 0.483430 | 7.3:+24559184 | MS.gene024279:intron |
| AGAATCTCAAATTCTACCTC+TGG | 0.484241 | 7.3:+24555631 | MS.gene024279:CDS |
| CGTGCAAATGGTTTCTGGAC+AGG | 0.485426 | 7.3:+24554142 | MS.gene024279:CDS |
| GAGCCTCGGTTCATCTGCTC+AGG | 0.488230 | 7.3:+24552784 | MS.gene024279:CDS |
| AAGAAATCGTCAGTCTTGAT+TGG | 0.489756 | 7.3:-24554006 | None:intergenic |
| CGTAGTCTACCTTCTTTCCT+GGG | 0.490814 | 7.3:-24559459 | None:intergenic |
| ACAGAAGTTGAACTGGTTCA+AGG | 0.495501 | 7.3:+24554892 | MS.gene024279:CDS |
| CTGACATAGCGTTTCAAAGC+TGG | 0.497109 | 7.3:-24554181 | None:intergenic |
| GCGTTTCAAAGCTGGTCTAC+TGG | 0.497765 | 7.3:-24554173 | None:intergenic |
| GTAAAAGTGCGGATTTCCAT+TGG | 0.501131 | 7.3:-24560553 | None:intergenic |
| GATTTGCCCATCTTCTAAGC+TGG | 0.501303 | 7.3:-24557655 | None:intergenic |
| TTTAGAGGGCGAAAGAACTC+AGG | 0.501312 | 7.3:+24554338 | MS.gene024279:CDS |
| TACCAGACAGTACAAAGAAA+AGG | 0.505652 | 7.3:+24556695 | MS.gene024279:CDS |
| AATAATTTCCAGCAACGGGC+TGG | 0.505914 | 7.3:-24557298 | None:intergenic |
| AGAATAGACCCTTTGGGTGA+GGG | 0.506802 | 7.3:+24558676 | MS.gene024279:CDS |
| AACTGTGGAGCTTGCTCCAA+TGG | 0.506887 | 7.3:+24560537 | MS.gene024279:CDS |
| ATCCTGAAAATGTTGTTACA+TGG | 0.508095 | 7.3:-24558883 | None:intergenic |
| CTACAGAACAGACTGGGACT+TGG | 0.508692 | 7.3:+24557268 | MS.gene024279:CDS |
| CTGTGCCGGTGACTGCATCA+TGG | 0.509159 | 7.3:-24554406 | None:intergenic |
| TAGAATAGACCCTTTGGGTG+AGG | 0.510130 | 7.3:+24558675 | MS.gene024279:CDS |
| AAGTGTATAAACTGATGATC+TGG | 0.510611 | 7.3:-24555911 | None:intergenic |
| CAATACTTGGGTGTCTTGGA+TGG | 0.512823 | 7.3:-24555710 | None:intergenic |
| GAACAGGAAATTTATCTATG+TGG | 0.515196 | 7.3:+24551740 | MS.gene024279:CDS |
| CTCGGACAAATCACATTATG+TGG | 0.518821 | 7.3:+24553708 | MS.gene024279:CDS |
| TGCACAGCAGAATGTCCAAA+CGG | 0.521779 | 7.3:-24552561 | None:intergenic |
| TGTGTTATACTCTATAAACT+TGG | 0.522749 | 7.3:-24551457 | None:intergenic |
| TGATGCACTTCATCTAGTAT+TGG | 0.525893 | 7.3:-24556537 | None:intergenic |
| TCGGAAAAGGCTAACAAAAG+TGG | 0.525918 | 7.3:-24558739 | None:intergenic |
| CGTTATACCCTGAATAGTAA+AGG | 0.531274 | 7.3:-24556231 | None:intergenic |
| AAGCCAATACTTGGGTGTCT+TGG | 0.535952 | 7.3:-24555714 | None:intergenic |
| TGGTTTATAACTCTCTTGGT+TGG | 0.536231 | 7.3:+24555042 | MS.gene024279:CDS |
| ATAAAAGAGAATTCCCAAAA+GGG | 0.539238 | 7.3:-24551424 | None:intergenic |
| TCTTATAAGTCATGAAAGAC+AGG | 0.539510 | 7.3:+24556409 | MS.gene024279:CDS |
| TATAGAGTATAACACATCAC+AGG | 0.540374 | 7.3:+24551464 | MS.gene024279:CDS |
| ATATTTCCTGGCCAAAAGTA+CGG | 0.540811 | 7.3:-24558711 | None:intergenic |
| CGTATAAATGCGCTAATCGA+AGG | 0.540840 | 7.3:-24559216 | None:intergenic |
| GGCTTGTGTGCAAAATGTGT+TGG | 0.541656 | 7.3:+24551686 | MS.gene024279:CDS |
| TGGAAAGTAGAAGGGTCCTC+TGG | 0.542542 | 7.3:+24560469 | MS.gene024279:CDS |
| AAATCACATTATGTGGACAA+TGG | 0.545205 | 7.3:+24553715 | MS.gene024279:CDS |
| TGGAAATGGAGGTGTTTCAA+GGG | 0.545678 | 7.3:+24560489 | MS.gene024279:CDS |
| TCCTGAAAATGTTGTTACAT+GGG | 0.545787 | 7.3:-24558882 | None:intergenic |
| TAATGATTATGCTAAACGAT+TGG | 0.546213 | 7.3:+24554445 | MS.gene024279:CDS |
| ACTGTTGATCAGTACTATGT+TGG | 0.549819 | 7.3:+24551555 | MS.gene024279:CDS |
| ATTTGACTCCAAGAATTGGT+TGG | 0.549978 | 7.3:+24552529 | MS.gene024279:CDS |
| GCTTATCTGCAAATCAAGAA+AGG | 0.550208 | 7.3:+24560419 | MS.gene024279:CDS |
| GCACAGCAGAATGTCCAAAC+GGG | 0.551546 | 7.3:-24552560 | None:intergenic |
| TGGACACCGATTTCTGAAAG+AGG | 0.552492 | 7.3:+24552500 | MS.gene024279:CDS |
| AAATCGAGTTGATGCTCCAC+AGG | 0.552903 | 7.3:+24557673 | MS.gene024279:CDS |
| ATTTAGCTCCCTCACCCAAA+GGG | 0.553112 | 7.3:-24558684 | None:intergenic |
| GGAGGATCCAGCTTAGAAGA+TGG | 0.554711 | 7.3:+24557648 | MS.gene024279:CDS |
| TGGGTAATAATTTCCAGCAA+CGG | 0.556408 | 7.3:-24557303 | None:intergenic |
| TAAGATGTGTTCCATTTGGA+CGG | 0.558123 | 7.3:-24556391 | None:intergenic |
| TCAAATTCTACCTCTGGCTG+AGG | 0.558671 | 7.3:+24555637 | MS.gene024279:CDS |
| GTGTAAGTGCTAAAACCAAA+TGG | 0.559441 | 7.3:-24555758 | None:intergenic |
| GTTCCAGTGACTGTTCTCCA+TGG | 0.560750 | 7.3:+24556513 | MS.gene024279:CDS |
| CAAAACACCTGATATATCCA+TGG | 0.563546 | 7.3:-24556570 | None:intergenic |
| GGTCCTATACCTATTGAAGA+TGG | 0.564137 | 7.3:+24556926 | MS.gene024279:CDS |
| GCTCATACTCATGATGATGT+TGG | 0.565983 | 7.3:+24551522 | MS.gene024279:CDS |
| GGTCCATGGAGAACAGTCAC+TGG | 0.569176 | 7.3:-24556516 | None:intergenic |
| ATGATTGATCAGACTACACT+TGG | 0.569418 | 7.3:+24552480 | MS.gene024279:CDS |
| AGTATCAATACGCACATACA+TGG | 0.569841 | 7.3:+24553750 | MS.gene024279:CDS |
| AAGGAGGTTCATAGTTCTCA+GGG | 0.570158 | 7.3:-24552964 | None:intergenic |
| CATTTAGCTCCCTCACCCAA+AGG | 0.572359 | 7.3:-24558685 | None:intergenic |
| ATACCTATTGAAGATGGAGT+TGG | 0.572453 | 7.3:+24556932 | MS.gene024279:CDS |
| GAGGATCCAGCTTAGAAGAT+GGG | 0.572606 | 7.3:+24557649 | MS.gene024279:CDS |
| AGTCTTGAGGTTATCTGGCA+AGG | 0.579058 | 7.3:+24552755 | MS.gene024279:CDS |
| ACGATTGGCAATAGGCTACA+AGG | 0.579394 | 7.3:+24554460 | MS.gene024279:CDS |
| AGTCATGAAAAGTCTTCCAT+AGG | 0.579693 | 7.3:+24555937 | MS.gene024279:CDS |
| GAAAAGTCTTCCATAGGTCA+AGG | 0.583359 | 7.3:+24555943 | MS.gene024279:CDS |
| GACTTGTTTGGAAAGTAGAA+GGG | 0.584116 | 7.3:+24560461 | MS.gene024279:CDS |
| CATCACAGGGCATAGTCTCT+GGG | 0.586863 | 7.3:+24551478 | MS.gene024279:CDS |
| TGCATCAACGAATCAATCCA+TGG | 0.588424 | 7.3:+24556553 | MS.gene024279:CDS |
| CAACACCATGATGCAGTCAC+CGG | 0.591654 | 7.3:+24554401 | MS.gene024279:CDS |
| TTTGCATCTGTATATATGGA+GGG | 0.592290 | 7.3:-24553961 | None:intergenic |
| CTTCATCTAGTATTGGTCCA+TGG | 0.596258 | 7.3:-24556530 | None:intergenic |
| TACGTGACTACAGAACAGAC+TGG | 0.596442 | 7.3:+24557261 | MS.gene024279:CDS |
| GGTAGGATGATAAAGATGAC+TGG | 0.599141 | 7.3:+24558852 | MS.gene024279:intron |
| CCTTTCAGGAACTTGATCAA+GGG | 0.599608 | 7.3:+24559185 | MS.gene024279:intron |
| GGTATTAGATCAAAGAAGTG+AGG | 0.605616 | 7.3:+24560389 | MS.gene024279:intron |
| TCAGGAACTTGATCAAGGGA+CGG | 0.606166 | 7.3:+24559189 | MS.gene024279:intron |
| AAATCAAGAAAGGACAGAGA+TGG | 0.607796 | 7.3:+24560429 | MS.gene024279:CDS |
| TCTAAGAAACTATTATGTCA+AGG | 0.610906 | 7.3:+24555670 | MS.gene024279:CDS |
| ACATACATGGTACCGACAGT+TGG | 0.612842 | 7.3:+24553763 | MS.gene024279:CDS |
| TTATGTTAATGCAAGAAACA+TGG | 0.614150 | 7.3:+24556011 | MS.gene024279:CDS |
| TGTATAAACTGATGATCTGG+TGG | 0.614284 | 7.3:-24555908 | None:intergenic |
| AATATGCTGCAAATGAGTCA+TGG | 0.618901 | 7.3:+24553983 | MS.gene024279:CDS |
| GTATTAGATCAAAGAAGTGA+GGG | 0.621648 | 7.3:+24560390 | MS.gene024279:intron |
| TTGCTTGGTTGAATCAACAT+CGG | 0.621818 | 7.3:+24554597 | MS.gene024279:CDS |
| GGAAATGGAGGTGTTTCAAG+GGG | 0.622441 | 7.3:+24560490 | MS.gene024279:CDS |
| TTGCTGCTTGATGATTCTAG+AGG | 0.624603 | 7.3:+24558069 | MS.gene024279:CDS |
| CGCTATGTCAGATTAATGAG+TGG | 0.627187 | 7.3:+24554193 | MS.gene024279:CDS |
| TGGCAAGGTAGCAAGAGCCT+CGG | 0.630943 | 7.3:+24552770 | MS.gene024279:CDS |
| TCAAAGTAAAATCCAGAAGG+AGG | 0.631190 | 7.3:-24552980 | None:intergenic |
| TTAGAGGGCGAAAGAACTCA+GGG | 0.634363 | 7.3:+24554339 | MS.gene024279:CDS |
| GAAAATGCAAGCCAATACTT+GGG | 0.635413 | 7.3:-24555722 | None:intergenic |
| GAAGGGTCCTCTGGAAATGG+AGG | 0.635637 | 7.3:+24560478 | MS.gene024279:CDS |
| CAAAGTAAATGGTAAAAGTG+CGG | 0.640298 | 7.3:-24560564 | None:intergenic |
| CTGTGTTGCTGACAATTGCA+AGG | 0.641022 | 7.3:+24558119 | MS.gene024279:CDS |
| ATACTCATGATGATGTTGGA+TGG | 0.641633 | 7.3:+24551526 | MS.gene024279:CDS |
| ACTTCAAAGTAAAATCCAGA+AGG | 0.641851 | 7.3:-24552983 | None:intergenic |
| TGCACAGATCGAAGAAGACA+AGG | 0.643150 | 7.3:+24559396 | MS.gene024279:intron |
| TGAAACACCTCCATTTCCAG+AGG | 0.645145 | 7.3:-24560485 | None:intergenic |
| AATGGAGGTGTTTCAAGGGG+AGG | 0.649350 | 7.3:+24560493 | MS.gene024279:CDS |
| GAATGAGCTTGTCCAACTGT+CGG | 0.650516 | 7.3:-24553775 | None:intergenic |
| GCTCATTCATTACGTGAACA+AGG | 0.651468 | 7.3:+24553790 | MS.gene024279:CDS |
| CAATAAGTTATGTTCAAAAG+CGG | 0.652336 | 7.3:-24554862 | None:intergenic |
| TTTCCATGTCACAGAAACGG+TGG | 0.654844 | 7.3:+24552417 | MS.gene024279:intron |
| TTGGTGGATAGAGCTATAGG+AGG | 0.655512 | 7.3:+24557630 | MS.gene024279:CDS |
| ACGTGACTACAGAACAGACT+GGG | 0.657692 | 7.3:+24557262 | MS.gene024279:CDS |
| TGATTCTAGAGGTGTTGCAG+AGG | 0.660259 | 7.3:+24558080 | MS.gene024279:CDS |
| CGGCACAGAAAAGCAGCACG+TGG | 0.665131 | 7.3:+24554421 | MS.gene024279:CDS |
| TTGGTAAAGAAGTTTCCACT+CGG | 0.667704 | 7.3:+24556951 | MS.gene024279:CDS |
| GTTACAGTTCATGACTCCAA+CGG | 0.668698 | 7.3:+24555599 | MS.gene024279:CDS |
| CATAGTAGTTGAAATCCGAG+TGG | 0.668936 | 7.3:-24556966 | None:intergenic |
| TCGATTAGCGCATTTATACG+AGG | 0.670614 | 7.3:+24559219 | MS.gene024279:CDS |
| TGTGTTGCTGACAATTGCAA+GGG | 0.677060 | 7.3:+24558120 | MS.gene024279:CDS |
| TCTACAAATACCTCAGCCAG+AGG | 0.690237 | 7.3:-24555647 | None:intergenic |
| TCTCTCTGTAGTGACAAGTG+TGG | 0.697065 | 7.3:+24559420 | MS.gene024279:CDS |
| TCACCTGAGCAGATGAACCG+AGG | 0.700248 | 7.3:-24552787 | None:intergenic |
| TGGCATGTGTATGCATGATG+AGG | 0.703361 | 7.3:+24552437 | MS.gene024279:CDS |
| TGATCCAAAAGAGTTAACTG+TGG | 0.703430 | 7.3:+24560522 | MS.gene024279:CDS |
| TAAGTGCTAAAACCAAATGG+TGG | 0.707183 | 7.3:-24555755 | None:intergenic |
| ATAGAGTATAACACATCACA+GGG | 0.708331 | 7.3:+24551465 | MS.gene024279:CDS |
| ATTGGCAATAGGCTACAAGG+AGG | 0.782057 | 7.3:+24554463 | MS.gene024279:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 24551396 | 24560618 | 24551396 | ID=MS.gene024279 |
| chr7.3 | mRNA | 24551396 | 24560618 | 24551396 | ID=MS.gene024279.t1;Parent=MS.gene024279 |
| chr7.3 | exon | 24551396 | 24551596 | 24551396 | ID=MS.gene024279.t1.exon1;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24551396 | 24551596 | 24551396 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24551684 | 24551767 | 24551684 | ID=MS.gene024279.t1.exon2;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24551684 | 24551767 | 24551684 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24552206 | 24552294 | 24552206 | ID=MS.gene024279.t1.exon3;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24552206 | 24552294 | 24552206 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24552431 | 24552605 | 24552431 | ID=MS.gene024279.t1.exon4;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24552431 | 24552605 | 24552431 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24552686 | 24552805 | 24552686 | ID=MS.gene024279.t1.exon5;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24552686 | 24552805 | 24552686 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24552947 | 24553030 | 24552947 | ID=MS.gene024279.t1.exon6;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24552947 | 24553030 | 24552947 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24553120 | 24553191 | 24553120 | ID=MS.gene024279.t1.exon7;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24553120 | 24553191 | 24553120 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24553698 | 24553811 | 24553698 | ID=MS.gene024279.t1.exon8;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24553698 | 24553811 | 24553698 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24553931 | 24554031 | 24553931 | ID=MS.gene024279.t1.exon9;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24553931 | 24554031 | 24553931 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24554132 | 24554225 | 24554132 | ID=MS.gene024279.t1.exon10;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24554132 | 24554225 | 24554132 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24554317 | 24554484 | 24554317 | ID=MS.gene024279.t1.exon11;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24554317 | 24554484 | 24554317 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24554568 | 24554657 | 24554568 | ID=MS.gene024279.t1.exon12;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24554568 | 24554657 | 24554568 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24554859 | 24554924 | 24554859 | ID=MS.gene024279.t1.exon13;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24554859 | 24554924 | 24554859 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24555035 | 24555091 | 24555035 | ID=MS.gene024279.t1.exon14;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24555035 | 24555091 | 24555035 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24555584 | 24555803 | 24555584 | ID=MS.gene024279.t1.exon15;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24555584 | 24555803 | 24555584 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24555905 | 24556032 | 24555905 | ID=MS.gene024279.t1.exon16;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24555905 | 24556032 | 24555905 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24556205 | 24556276 | 24556205 | ID=MS.gene024279.t1.exon17;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24556205 | 24556276 | 24556205 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24556371 | 24556430 | 24556371 | ID=MS.gene024279.t1.exon18;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24556371 | 24556430 | 24556371 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24556513 | 24556584 | 24556513 | ID=MS.gene024279.t1.exon19;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24556513 | 24556584 | 24556513 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24556693 | 24556740 | 24556693 | ID=MS.gene024279.t1.exon20;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24556693 | 24556740 | 24556693 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24556923 | 24557042 | 24556923 | ID=MS.gene024279.t1.exon21;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24556923 | 24557042 | 24556923 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24557260 | 24557325 | 24557260 | ID=MS.gene024279.t1.exon22;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24557260 | 24557325 | 24557260 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24557582 | 24557694 | 24557582 | ID=MS.gene024279.t1.exon23;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24557582 | 24557694 | 24557582 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24558065 | 24558149 | 24558065 | ID=MS.gene024279.t1.exon24;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24558065 | 24558149 | 24558065 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24558655 | 24558765 | 24558655 | ID=MS.gene024279.t1.exon25;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24558655 | 24558765 | 24558655 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24558857 | 24558955 | 24558857 | ID=MS.gene024279.t1.exon26;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24558857 | 24558955 | 24558857 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24559193 | 24559240 | 24559193 | ID=MS.gene024279.t1.exon27;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24559193 | 24559240 | 24559193 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24559403 | 24559471 | 24559403 | ID=MS.gene024279.t1.exon28;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24559403 | 24559471 | 24559403 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| chr7.3 | exon | 24560397 | 24560618 | 24560397 | ID=MS.gene024279.t1.exon29;Parent=MS.gene024279.t1 |
| chr7.3 | CDS | 24560397 | 24560618 | 24560397 | ID=cds.MS.gene024279.t1;Parent=MS.gene024279.t1 |
| Gene Sequence |
| Protein sequence |
