Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012194.t1 | XP_003609979.1 | 93.2 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 2.90E-99 | 371.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012194.t1 | Q9LMA8 | 36.1 | 255 | 108 | 9 | 1 | 203 | 1 | 252 | 3.1e-25 | 116.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012194.t1 | G7JS78 | 93.2 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 2.1e-99 | 371.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene012194.t1 | TF | Tify |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85313 | MS.gene012194 | PPI |
MS.gene012194 | MS.gene85363 | PPI |
MS.gene068904 | MS.gene012194 | PPI |
MS.gene26736 | MS.gene012194 | PPI |
MS.gene012194 | MS.gene062084 | PPI |
MS.gene025386 | MS.gene012194 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012194.t1 | MTR_4g124960 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 3.71e-129 | 362 |
MS.gene012194.t1 | MTR_4g124960 | 93.143 | 175 | 9 | 1 | 1 | 175 | 1 | 172 | 2.02e-108 | 308 |
MS.gene012194.t1 | MTR_2g042900 | 44.828 | 261 | 76 | 11 | 1 | 204 | 1 | 250 | 1.95e-49 | 161 |
MS.gene012194.t1 | MTR_4g124950 | 64.286 | 126 | 40 | 1 | 70 | 190 | 1 | 126 | 8.55e-44 | 143 |
MS.gene012194.t1 | MTR_2g042900 | 49.704 | 169 | 65 | 8 | 1 | 152 | 1 | 166 | 2.15e-34 | 122 |
MS.gene012194.t1 | MTR_5g013530 | 36.478 | 159 | 71 | 5 | 76 | 204 | 5 | 163 | 2.35e-21 | 87.0 |
MS.gene012194.t1 | MTR_5g013530 | 39.007 | 141 | 65 | 5 | 85 | 204 | 1 | 141 | 2.69e-21 | 86.3 |
MS.gene012194.t1 | MTR_5g013520 | 35.385 | 130 | 56 | 3 | 98 | 204 | 9 | 133 | 1.25e-20 | 84.3 |
MS.gene012194.t1 | MTR_5g013515 | 36.364 | 132 | 60 | 2 | 94 | 201 | 4 | 135 | 4.05e-20 | 82.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012194.t1 | AT1G19180 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.10e-35 | 126 |
MS.gene012194.t1 | AT1G19180 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.10e-35 | 126 |
MS.gene012194.t1 | AT1G74950 | 35.745 | 235 | 84 | 10 | 7 | 180 | 1 | 229 | 2.09e-27 | 104 |
MS.gene012194.t1 | AT1G74950 | 35.683 | 227 | 79 | 10 | 7 | 172 | 1 | 221 | 5.78e-24 | 95.1 |
MS.gene012194.t1 | AT1G19180 | 39.098 | 133 | 52 | 5 | 99 | 203 | 55 | 186 | 1.16e-18 | 80.1 |
MS.gene012194.t1 | AT1G17380 | 29.353 | 201 | 108 | 5 | 13 | 180 | 7 | 206 | 6.77e-14 | 68.9 |
Find 44 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGACTTCATCGGACATTTC+TGG | 0.184990 | 8.1:+7097952 | MS.gene012194:CDS |
ATTGTCAATTGTGCAGTTTC+TGG | 0.207124 | 8.1:-7098575 | None:intergenic |
CCTTCTTCTCCTTGAGGTAT+TGG | 0.218986 | 8.1:-7098044 | None:intergenic |
GGTTGTTGAGGGATCATATT+AGG | 0.246891 | 8.1:-7098698 | None:intergenic |
CAACAACCTCCCTCACTAAT+TGG | 0.267401 | 8.1:+7098713 | MS.gene012194:CDS |
AGCTTCACTTCGTCGATTCA+TGG | 0.304214 | 8.1:+7098894 | MS.gene012194:CDS |
TCAGGAAAGGTTCTTTGATA+TGG | 0.341074 | 8.1:-7099311 | None:intergenic |
TTTATTTACCATTTGTTTCA+GGG | 0.363709 | 8.1:-7098104 | None:intergenic |
CGACTTTATCAGTTTGTTGC+CGG | 0.376712 | 8.1:-7097980 | None:intergenic |
AGCTCCTCAACTTTCTCAGC+AGG | 0.410410 | 8.1:-7098635 | None:intergenic |
TCCGCTCCATGGCTTGTGTT+AGG | 0.414480 | 8.1:+7099359 | MS.gene012194:CDS |
TTACAGAGTTATTAATCCTA+TGG | 0.427315 | 8.1:+7098544 | MS.gene012194:intron |
TCATGGAGAAGAGGAAAGAT+AGG | 0.451183 | 8.1:+7098911 | MS.gene012194:CDS |
GTTTCTGGCTCTTTAACCAT+AGG | 0.475200 | 8.1:-7098560 | None:intergenic |
CCAATACCTCAAGGAGAAGA+AGG | 0.480824 | 8.1:+7098044 | MS.gene012194:CDS |
CAATCTACAGGGTCATCACC+TGG | 0.484929 | 8.1:+7098324 | MS.gene012194:intron |
TTAGTGAGGGAGGTTGTTGA+GGG | 0.495882 | 8.1:-7098709 | None:intergenic |
TTATTTACCATTTGTTTCAG+GGG | 0.508177 | 8.1:-7098103 | None:intergenic |
GATACCAATGTCGACTTCAT+CGG | 0.515126 | 8.1:+7097942 | None:intergenic |
ATTAGTGAGGGAGGTTGTTG+AGG | 0.517348 | 8.1:-7098710 | None:intergenic |
GCATGCACCCCTGAAACAAA+TGG | 0.517892 | 8.1:+7098096 | MS.gene012194:CDS |
TAATGGACAAGTTATTGTGT+TGG | 0.534161 | 8.1:+7098604 | MS.gene012194:CDS |
GAGAAGAAGGGTAGTTTCGA+AGG | 0.535740 | 8.1:+7098057 | MS.gene012194:CDS |
CAGGGGTGCATGCGTTGTGA+AGG | 0.536647 | 8.1:-7098086 | None:intergenic |
CCTGGTTCATCTTCTCACTC+TGG | 0.547944 | 8.1:+7098342 | MS.gene012194:CDS |
CCAGAGTGAGAAGATGAACC+AGG | 0.548191 | 8.1:-7098342 | None:intergenic |
AGCATGCTGACTCCGCTCCA+TGG | 0.562298 | 8.1:+7099348 | MS.gene012194:CDS |
TGCATGCGTTGTGAAGGTTA+AGG | 0.575616 | 8.1:-7098080 | None:intergenic |
AAATCAATTACCAATTAGTG+AGG | 0.584879 | 8.1:-7098723 | None:intergenic |
GGTTCTTTGATATGGTGAGT+AGG | 0.584950 | 8.1:-7099303 | None:intergenic |
TTCTGGAGCAGAGTCAGGAA+AGG | 0.587295 | 8.1:-7099324 | None:intergenic |
GTTTGTGGGAAATAAATCCA+TGG | 0.589977 | 8.1:-7098370 | None:intergenic |
TTAGCACCTAACACAAGCCA+TGG | 0.596993 | 8.1:-7099365 | None:intergenic |
AACTACCCTTCTTCTCCTTG+AGG | 0.603992 | 8.1:-7098050 | None:intergenic |
TTCTCACTCTGGAATAACCA+TGG | 0.605298 | 8.1:+7098353 | MS.gene012194:CDS |
CAATTACCAATTAGTGAGGG+AGG | 0.610131 | 8.1:-7098719 | None:intergenic |
CAATACCTCAAGGAGAAGAA+GGG | 0.616382 | 8.1:+7098045 | MS.gene012194:CDS |
TTCGTCGATTCATGGAGAAG+AGG | 0.618289 | 8.1:+7098902 | MS.gene012194:CDS |
ACCTAACACAAGCCATGGAG+CGG | 0.623220 | 8.1:-7099360 | None:intergenic |
TCTATTGAGCCAATACCTCA+AGG | 0.624878 | 8.1:+7098035 | MS.gene012194:CDS |
AATCAATTACCAATTAGTGA+GGG | 0.634671 | 8.1:-7098722 | None:intergenic |
ATGTCCGATGAAGTCGACAT+TGG | 0.636880 | 8.1:-7097946 | None:intergenic |
TTACAAGTTTGAGAAAACGT+AGG | 0.650898 | 8.1:-7098012 | None:intergenic |
CAACAAACTGATAAAGTCGT+CGG | 0.655555 | 8.1:+7097984 | MS.gene012194:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTTAATTTAACTGA+TGG | + | chr8.1:7098832-7098851 | MS.gene012194:intron | 10.0% |
!!! | ATGTCTATTAAATCTTTTTT+CGG | + | chr8.1:7099011-7099030 | MS.gene012194:intron | 15.0% |
!! | TTTATTTACCATTTGTTTCA+GGG | - | chr8.1:7098107-7098126 | None:intergenic | 20.0% |
!!! | CAATTGACAATGTTTTATAA+TGG | + | chr8.1:7098587-7098606 | MS.gene012194:CDS | 20.0% |
!!! | TTTTATTTACCATTTGTTTC+AGG | - | chr8.1:7098108-7098127 | None:intergenic | 20.0% |
!!! | TTTTCTTTTTTCAATCTACA+GGG | + | chr8.1:7098313-7098332 | MS.gene012194:intron | 20.0% |
!!! | TTTTTCTTTTTTCAATCTAC+AGG | + | chr8.1:7098312-7098331 | MS.gene012194:intron | 20.0% |
! | AAATCAATTACCAATTAGTG+AGG | - | chr8.1:7098726-7098745 | None:intergenic | 25.0% |
! | AAATGAACTTGGTCAAAAAA+TGG | + | chr8.1:7098210-7098229 | MS.gene012194:intron | 25.0% |
! | AACCGAATAGAGAAAAATAA+GGG | - | chr8.1:7098269-7098288 | None:intergenic | 25.0% |
! | AATCAATTACCAATTAGTGA+GGG | - | chr8.1:7098725-7098744 | None:intergenic | 25.0% |
! | AATCCAAAATCCAAATTAGT+TGG | - | chr8.1:7099043-7099062 | None:intergenic | 25.0% |
! | AGAAAAAATCCATAGTTGTA+AGG | - | chr8.1:7098410-7098429 | None:intergenic | 25.0% |
! | CTTGATAAGTAAATAACAAG+AGG | - | chr8.1:7099207-7099226 | None:intergenic | 25.0% |
! | TAACCGAATAGAGAAAAATA+AGG | - | chr8.1:7098270-7098289 | None:intergenic | 25.0% |
! | TAGTCTTTGTTAAATGAACT+TGG | + | chr8.1:7098199-7098218 | MS.gene012194:intron | 25.0% |
! | TTACAGAGTTATTAATCCTA+TGG | + | chr8.1:7098544-7098563 | MS.gene012194:intron | 25.0% |
! | TTATTTACCATTTGTTTCAG+GGG | - | chr8.1:7098106-7098125 | None:intergenic | 25.0% |
!! | AATTCAGTTCCTATAGTTTT+GGG | + | chr8.1:7098144-7098163 | MS.gene012194:intron | 25.0% |
!! | CAAATACAGGAAATTGTTTT+TGG | + | chr8.1:7098784-7098803 | MS.gene012194:intron | 25.0% |
!! | TTGTGATTTGAAACAAATAC+AGG | + | chr8.1:7098771-7098790 | MS.gene012194:intron | 25.0% |
!!! | ATTTAATTTGTTTGAGAGAG+AGG | - | chr8.1:7098941-7098960 | None:intergenic | 25.0% |
!!! | CTATTAAATCTTTTTTCGGT+TGG | + | chr8.1:7099015-7099034 | MS.gene012194:intron | 25.0% |
!!! | TTCCCTTATTTTTCTCTATT+CGG | + | chr8.1:7098264-7098283 | MS.gene012194:intron | 25.0% |
!!! | TTGAACATTTTTTGAGCTTT+TGG | + | chr8.1:7099061-7099080 | MS.gene012194:intron | 25.0% |
AATTGCAATGACTCAAACAA+TGG | - | chr8.1:7098492-7098511 | None:intergenic | 30.0% | |
TTACAAGTTTGAGAAAACGT+AGG | - | chr8.1:7098015-7098034 | None:intergenic | 30.0% | |
TTCTCTATTCGGTTACAATT+GGG | + | chr8.1:7098275-7098294 | MS.gene012194:intron | 30.0% | |
TTTCTCTATTCGGTTACAAT+TGG | + | chr8.1:7098274-7098293 | MS.gene012194:intron | 30.0% | |
! | CAATTCAGTTCCTATAGTTT+TGG | + | chr8.1:7098143-7098162 | MS.gene012194:intron | 30.0% |
! | GTACCAACTAATTTGGATTT+TGG | + | chr8.1:7099037-7099056 | MS.gene012194:intron | 30.0% |
! | TAATGGACAAGTTATTGTGT+TGG | + | chr8.1:7098604-7098623 | MS.gene012194:CDS | 30.0% |
! | TCCATAGTTGTAAGGTTTTT+CGG | - | chr8.1:7098402-7098421 | None:intergenic | 30.0% |
!! | ATTCTAAAGCCCAAAACTAT+AGG | - | chr8.1:7098156-7098175 | None:intergenic | 30.0% |
!!! | AGGAAATTGTTTTTGGTATC+AGG | + | chr8.1:7098791-7098810 | MS.gene012194:intron | 30.0% |
!!! | CTATGGATTTTTTCTTTCCA+AGG | + | chr8.1:7098415-7098434 | MS.gene012194:CDS | 30.0% |
!!! | GGAAATTGTTTTTGGTATCA+GGG | + | chr8.1:7098792-7098811 | MS.gene012194:intron | 30.0% |
ACCGAAAAACCTTACAACTA+TGG | + | chr8.1:7098398-7098417 | MS.gene012194:CDS | 35.0% | |
ATGCATGCATAGCATAAATC+TGG | + | chr8.1:7099086-7099105 | MS.gene012194:intron | 35.0% | |
ATTGTCAATTGTGCAGTTTC+TGG | - | chr8.1:7098578-7098597 | None:intergenic | 35.0% | |
ATTTCCAGTCACACAAAGAA+AGG | - | chr8.1:7099112-7099131 | None:intergenic | 35.0% | |
CAACAAACTGATAAAGTCGT+CGG | + | chr8.1:7097984-7098003 | MS.gene012194:CDS | 35.0% | |
GTTTGTGGGAAATAAATCCA+TGG | - | chr8.1:7098373-7098392 | None:intergenic | 35.0% | |
TCAGGAAAGGTTCTTTGATA+TGG | - | chr8.1:7099314-7099333 | None:intergenic | 35.0% | |
! | AAAAGCACAAAAACTCACCT+TGG | - | chr8.1:7098435-7098454 | None:intergenic | 35.0% |
!! | AGTGAAGCTTTTCTAGCAAT+TGG | - | chr8.1:7098883-7098902 | None:intergenic | 35.0% |
AGGCAAAGCAATTTGCACAA+TGG | - | chr8.1:7099187-7099206 | None:intergenic | 40.0% | |
CAATACCTCAAGGAGAAGAA+GGG | + | chr8.1:7098045-7098064 | MS.gene012194:CDS | 40.0% | |
CAATTACCAATTAGTGAGGG+AGG | - | chr8.1:7098722-7098741 | None:intergenic | 40.0% | |
GGTTCTTTGATATGGTGAGT+AGG | - | chr8.1:7099306-7099325 | None:intergenic | 40.0% | |
GGTTGTTGAGGGATCATATT+AGG | - | chr8.1:7098701-7098720 | None:intergenic | 40.0% | |
TCATGGAGAAGAGGAAAGAT+AGG | + | chr8.1:7098911-7098930 | MS.gene012194:CDS | 40.0% | |
TCTATTGAGCCAATACCTCA+AGG | + | chr8.1:7098035-7098054 | MS.gene012194:CDS | 40.0% | |
! | TCGGTTGGTACCAACTAATT+TGG | + | chr8.1:7099030-7099049 | MS.gene012194:intron | 40.0% |
! | TTTTCCTGCTGAGAAAGTTG+AGG | + | chr8.1:7098631-7098650 | MS.gene012194:CDS | 40.0% |
!! | CGACTTTATCAGTTTGTTGC+CGG | - | chr8.1:7097983-7098002 | None:intergenic | 40.0% |
!! | GTTTCTGGCTCTTTAACCAT+AGG | - | chr8.1:7098563-7098582 | None:intergenic | 40.0% |
!! | TTCTCACTCTGGAATAACCA+TGG | + | chr8.1:7098353-7098372 | MS.gene012194:CDS | 40.0% |
!!! | TCGGACATTTCTGGTTTTTC+CGG | + | chr8.1:7097961-7097980 | MS.gene012194:CDS | 40.0% |
!!! | TTTTTCGGTGTCACGTTTGT+GGG | - | chr8.1:7098387-7098406 | None:intergenic | 40.0% |
AACTACCCTTCTTCTCCTTG+AGG | - | chr8.1:7098053-7098072 | None:intergenic | 45.0% | |
ATTAGTGAGGGAGGTTGTTG+AGG | - | chr8.1:7098713-7098732 | None:intergenic | 45.0% | |
CAACAACCTCCCTCACTAAT+TGG | + | chr8.1:7098713-7098732 | MS.gene012194:CDS | 45.0% | |
CCAATACCTCAAGGAGAAGA+AGG | + | chr8.1:7098044-7098063 | MS.gene012194:CDS | 45.0% | |
CCTTCTTCTCCTTGAGGTAT+TGG | - | chr8.1:7098047-7098066 | None:intergenic | 45.0% | |
GAGAAGAAGGGTAGTTTCGA+AGG | + | chr8.1:7098057-7098076 | MS.gene012194:CDS | 45.0% | |
TCGACTTCATCGGACATTTC+TGG | + | chr8.1:7097952-7097971 | MS.gene012194:CDS | 45.0% | |
TGCATGCGTTGTGAAGGTTA+AGG | - | chr8.1:7098083-7098102 | None:intergenic | 45.0% | |
TTAGCACCTAACACAAGCCA+TGG | - | chr8.1:7099368-7099387 | None:intergenic | 45.0% | |
TTAGTGAGGGAGGTTGTTGA+GGG | - | chr8.1:7098712-7098731 | None:intergenic | 45.0% | |
!! | AGCTTCACTTCGTCGATTCA+TGG | + | chr8.1:7098894-7098913 | MS.gene012194:CDS | 45.0% |
!! | TTCGTCGATTCATGGAGAAG+AGG | + | chr8.1:7098902-7098921 | MS.gene012194:CDS | 45.0% |
!!! | GTTTTTCGGTGTCACGTTTG+TGG | - | chr8.1:7098388-7098407 | None:intergenic | 45.0% |
!! | AATAACAATATTATTAAATT+AGG | - | chr8.1:7099255-7099274 | None:intergenic | 5.0% |
ACCTAACACAAGCCATGGAG+CGG | - | chr8.1:7099363-7099382 | None:intergenic | 50.0% | |
AGCTCCTCAACTTTCTCAGC+AGG | - | chr8.1:7098638-7098657 | None:intergenic | 50.0% | |
CAATCTACAGGGTCATCACC+TGG | + | chr8.1:7098324-7098343 | MS.gene012194:intron | 50.0% | |
CCAGAGTGAGAAGATGAACC+AGG | - | chr8.1:7098345-7098364 | None:intergenic | 50.0% | |
CCTGGTTCATCTTCTCACTC+TGG | + | chr8.1:7098342-7098361 | MS.gene012194:CDS | 50.0% | |
GCATGCACCCCTGAAACAAA+TGG | + | chr8.1:7098096-7098115 | MS.gene012194:CDS | 50.0% | |
! | CTGGCCTTTCTTTGTGTGAC+TGG | + | chr8.1:7099105-7099124 | MS.gene012194:intron | 50.0% |
!! | TTCTGGAGCAGAGTCAGGAA+AGG | - | chr8.1:7099327-7099346 | None:intergenic | 50.0% |
!!! | TGCTTTTCTGGAGCAGAGTC+AGG | - | chr8.1:7099332-7099351 | None:intergenic | 50.0% |
! | GCGGAGTCAGCATGCTTTTC+TGG | - | chr8.1:7099344-7099363 | None:intergenic | 55.0% |
! | TCCGCTCCATGGCTTGTGTT+AGG | + | chr8.1:7099359-7099378 | MS.gene012194:CDS | 55.0% |
! | CAGGGGTGCATGCGTTGTGA+AGG | - | chr8.1:7098089-7098108 | None:intergenic | 60.0% |
!! | AGCATGCTGACTCCGCTCCA+TGG | + | chr8.1:7099348-7099367 | MS.gene012194:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 7097949 | 7099397 | 7097949 | ID=MS.gene012194 |
chr8.1 | mRNA | 7097949 | 7099397 | 7097949 | ID=MS.gene012194.t1;Parent=MS.gene012194 |
chr8.1 | exon | 7097949 | 7098117 | 7097949 | ID=MS.gene012194.t1.exon1;Parent=MS.gene012194.t1 |
chr8.1 | CDS | 7097949 | 7098117 | 7097949 | ID=cds.MS.gene012194.t1;Parent=MS.gene012194.t1 |
chr8.1 | exon | 7098334 | 7098436 | 7098334 | ID=MS.gene012194.t1.exon2;Parent=MS.gene012194.t1 |
chr8.1 | CDS | 7098334 | 7098436 | 7098334 | ID=cds.MS.gene012194.t1;Parent=MS.gene012194.t1 |
chr8.1 | exon | 7098550 | 7098734 | 7098550 | ID=MS.gene012194.t1.exon3;Parent=MS.gene012194.t1 |
chr8.1 | CDS | 7098550 | 7098734 | 7098550 | ID=cds.MS.gene012194.t1;Parent=MS.gene012194.t1 |
chr8.1 | exon | 7098875 | 7098932 | 7098875 | ID=MS.gene012194.t1.exon4;Parent=MS.gene012194.t1 |
chr8.1 | CDS | 7098875 | 7098932 | 7098875 | ID=cds.MS.gene012194.t1;Parent=MS.gene012194.t1 |
chr8.1 | exon | 7099295 | 7099397 | 7099295 | ID=MS.gene012194.t1.exon5;Parent=MS.gene012194.t1 |
chr8.1 | CDS | 7099295 | 7099397 | 7099295 | ID=cds.MS.gene012194.t1;Parent=MS.gene012194.t1 |
Gene Sequence |
Protein sequence |