AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068904

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068904.t1 MTR_2g044910 93.301 209 12 1 1 209 1 207 6.63e-141 392
MS.gene068904.t1 MTR_2g044910 93.373 166 9 1 44 209 1 164 8.86e-110 311
MS.gene068904.t1 MTR_2g044910 85.256 156 16 3 1 154 1 151 1.59e-87 255
MS.gene068904.t1 MTR_4g124360 58.209 134 48 3 38 168 25 153 1.24e-42 142
MS.gene068904.t1 MTR_4g124360 58.824 136 47 4 52 184 1 130 5.20e-40 134
MS.gene068904.t1 MTR_5g013515 36.066 122 63 3 57 176 13 121 3.80e-15 69.7
MS.gene068904.t1 MTR_2g042900 32.031 128 64 3 58 168 112 233 7.68e-14 68.6
MS.gene068904.t1 MTR_5g013530 33.333 114 59 3 58 171 22 118 1.13e-12 63.5
MS.gene068904.t1 MTR_4g124960 32.231 121 45 3 50 168 91 176 1.40e-12 64.3
MS.gene068904.t1 MTR_5g013530 33.333 114 59 3 58 171 44 140 3.43e-12 62.8
MS.gene068904.t1 MTR_4g124960 31.933 119 44 3 50 166 91 174 8.54e-12 61.6
MS.gene068904.t1 MTR_5g013520 31.092 119 65 3 58 176 15 116 6.28e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068904.t1 AT5G20900 53.448 116 46 4 58 171 57 166 8.33e-31 112
MS.gene068904.t1 AT3G43440 38.760 129 53 4 57 183 130 234 8.84e-16 73.6
MS.gene068904.t1 AT3G43440 36.923 130 56 4 56 183 43 148 1.62e-15 71.2
MS.gene068904.t1 AT1G74950 37.097 124 49 4 59 168 120 228 5.21e-13 66.2
MS.gene068904.t1 AT1G19180 35.043 117 62 3 54 168 56 160 1.17e-12 64.3
MS.gene068904.t1 AT1G19180 34.746 118 61 4 54 168 122 226 2.15e-12 64.7
MS.gene068904.t1 AT1G19180 34.746 118 61 4 54 168 122 226 2.15e-12 64.7

Find 46 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTACCATCTTCTATAA+TGG 0.263317 2.1:-46014438 MS.gene068904:CDS
TTCCTTCACCTGTTCCTTCA+AGG 0.273672 2.1:-46014188 MS.gene068904:CDS
TCCTTCATTGAAACCGAATC+TGG 0.348326 2.1:+46013737 None:intergenic
TTTAGGTCAATGCCAGCATT+TGG 0.374746 2.1:-46014489 MS.gene068904:intron
TGCTGACAATTCGCCAGATT+CGG 0.379407 2.1:-46013750 MS.gene068904:CDS
TCTTCTCCTATTGCTGTTGA+TGG 0.379691 2.1:-46016334 MS.gene068904:CDS
AGTGAATGTCTGCGTGCTAT+TGG 0.383673 2.1:+46013955 None:intergenic
TGAGTTGTATTAGCAATCAT+TGG 0.398568 2.1:+46014459 None:intergenic
AGCTTACCATCTTCTATAAT+GGG 0.398580 2.1:-46014437 MS.gene068904:CDS
CTGCAGATAGAACTCTTTGC+AGG 0.418330 2.1:+46014108 None:intergenic
GCCAGATTCGGTTTCAATGA+AGG 0.420770 2.1:-46013738 MS.gene068904:CDS
CTAGCACCATCAACAGCAAT+AGG 0.427831 2.1:+46016328 None:intergenic
ATTGGATTCGTTCCAAATGC+TGG 0.440801 2.1:+46014477 None:intergenic
ACAGGTGAAGGAACAGGAAC+GGG 0.448799 2.1:+46014198 None:intergenic
GCTAGTTCCAACATGGTTGA+GGG 0.452791 2.1:-46016310 MS.gene068904:CDS
TTCTTCAGAAGCGGCGAGAC+AGG 0.453708 2.1:-46013924 MS.gene068904:intron
GTTGGCTGAAATTCTTCCAT+TGG 0.460471 2.1:+46013713 None:intergenic
CTTCTTCGTTTCACTAGACT+TGG 0.471119 2.1:+46014236 None:intergenic
TGATGGAATTCCTGCAGAAA+AGG 0.477638 2.1:-46014400 MS.gene068904:intron
GGGAGTATTTGTATCTATGA+TGG 0.478209 2.1:-46014417 MS.gene068904:CDS
TGCTAGTTCCAACATGGTTG+AGG 0.478224 2.1:-46016311 MS.gene068904:CDS
GCAGTTCCATGTGGCGAAGA+AGG 0.484372 2.1:+46014165 None:intergenic
CTGCAAAGAGTTCTATCTGC+AGG 0.484476 2.1:-46014107 MS.gene068904:CDS
GAAGGAACAGGTGAAGGAAC+AGG 0.487448 2.1:+46014192 None:intergenic
TGTGGCGAAGAAGGCCTTGA+AGG 0.491077 2.1:+46014174 None:intergenic
ATAGAACTCTTTGCAGGAAA+GGG 0.495560 2.1:+46014114 None:intergenic
TTCAAATGTTTCTTCAGAAG+CGG 0.502165 2.1:-46013933 MS.gene068904:CDS
AATACTCCCATTATAGAAGA+TGG 0.513403 2.1:+46014431 None:intergenic
GAAGAAGGCCTTGAAGGAAC+AGG 0.524051 2.1:+46014180 None:intergenic
GCTCAAGATGCAGATATAGT+TGG 0.526009 2.1:+46013695 None:intergenic
TCTAGAACACTAAACTGCTC+TGG 0.534853 2.1:+46016358 None:intergenic
TCAAGGCCTTCTTCGCCACA+TGG 0.540794 2.1:-46014171 MS.gene068904:CDS
AGTTCTATCTGCAGGCTGCA+AGG 0.555717 2.1:-46014099 MS.gene068904:intron
GATAGAACTCTTTGCAGGAA+AGG 0.557564 2.1:+46014113 None:intergenic
TGATAATATCGCTTCACCAC+AGG 0.571663 2.1:-46014142 MS.gene068904:CDS
GGCCTTGAAGGAACAGGTGA+AGG 0.574210 2.1:+46014186 None:intergenic
CATTGACCCCTCAACCATGT+TGG 0.577350 2.1:+46016303 None:intergenic
GGTTTCAATGAAGGAACCAA+TGG 0.581761 2.1:-46013729 MS.gene068904:CDS
AACAGGTGAAGGAACAGGAA+CGG 0.583312 2.1:+46014197 None:intergenic
AACAAAGGTAGCTGACAACA+TGG 0.591184 2.1:-46013786 MS.gene068904:CDS
GACAACATGGAGAACAACTT+CGG 0.616517 2.1:-46013773 MS.gene068904:CDS
GAACTCTTTGCAGGAAAGGG+AGG 0.634573 2.1:+46014117 None:intergenic
GCAGGAAAGGGAGGTGCCTG+TGG 0.640323 2.1:+46014126 None:intergenic
TGATGGTGCTAGTTCCAACA+TGG 0.653805 2.1:-46016317 MS.gene068904:CDS
CTAGTTCCAACATGGTTGAG+GGG 0.662811 2.1:-46016309 MS.gene068904:CDS
ATATTATCAGCAGTTCCATG+TGG 0.739266 2.1:+46014156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATTCAAAAAACTAA+AGG + chr2.1:46014127-46014146 None:intergenic 10.0%
!! ATCTTAGTTATTTAAAAAGT+TGG + chr2.1:46014831-46014850 None:intergenic 15.0%
!!! GTTGAGATTTTTTTTTTTTT+TGG - chr2.1:46013995-46014014 MS.gene068904:intron 15.0%
!!! GTTTTTAATTGTTGTTTTTT+TGG - chr2.1:46015504-46015523 MS.gene068904:intron 15.0%
!! AAAAATGGAAACACAAAAAT+AGG + chr2.1:46013924-46013943 None:intergenic 20.0%
!! AAAATGGAAACACAAAAATA+GGG + chr2.1:46013923-46013942 None:intergenic 20.0%
!! ATAATTTATGTTTGTACTAC+AGG - chr2.1:46016238-46016257 MS.gene068904:intron 20.0%
!! ATACAAATTGATACCATTTA+AGG + chr2.1:46014079-46014098 None:intergenic 20.0%
!! ATACACTGATACATATATTT+AGG - chr2.1:46015335-46015354 MS.gene068904:intron 20.0%
!! ATCAAAACAGAAACAAAAAA+TGG + chr2.1:46013939-46013958 None:intergenic 20.0%
!!! ACTGTATTATTTTCTCTTTT+AGG - chr2.1:46015576-46015595 MS.gene068904:intron 20.0%
!!! ATCAAAAACATGCTTTTTTT+TGG + chr2.1:46013845-46013864 None:intergenic 20.0%
!!! TAGCTTGGTTATTTTAATTT+TGG - chr2.1:46013973-46013992 MS.gene068904:intron 20.0%
!!! TCTATGAAAAACGAAATTTT+CGG - chr2.1:46014212-46014231 MS.gene068904:CDS 20.0%
!!! TTGTTCATCTAAAGTTTTTA+TGG + chr2.1:46014024-46014043 None:intergenic 20.0%
! AAAATTGTTCTAATGTGTTG+AGG - chr2.1:46014142-46014161 MS.gene068904:CDS 25.0%
! AAATTGTTCTAATGTGTTGA+GGG - chr2.1:46014143-46014162 MS.gene068904:CDS 25.0%
! AATGGAATAAGTCATTTGAA+TGG + chr2.1:46015134-46015153 None:intergenic 25.0%
! ACATGAATTTCATCAACTTA+TGG + chr2.1:46015069-46015088 None:intergenic 25.0%
! AGTGTATATGCTACATTAAT+GGG + chr2.1:46015322-46015341 None:intergenic 25.0%
! ATATGAAAATCGAAAAGAGT+AGG + chr2.1:46014343-46014362 None:intergenic 25.0%
! ATGTGTATAACCAAATTGAA+CGG - chr2.1:46015085-46015104 MS.gene068904:intron 25.0%
! TTAACTCTCTATATACTAAC+AGG - chr2.1:46015790-46015809 MS.gene068904:intron 25.0%
! TTTAGATGAACAATGAACTA+AGG - chr2.1:46014031-46014050 MS.gene068904:intron 25.0%
!! AAACGAAATTTTCGGTTAAA+TGG - chr2.1:46014220-46014239 MS.gene068904:CDS 25.0%
!! ACCATTTAAGGTACAAAAAT+TGG + chr2.1:46014067-46014086 None:intergenic 25.0%
!! CATACACAAAATTTGAAACA+TGG + chr2.1:46016197-46016216 None:intergenic 25.0%
!! TCCAATTTTTGTACCTTAAA+TGG - chr2.1:46014063-46014082 MS.gene068904:intron 25.0%
!!! AGATATGTCATTGTTTTTCA+TGG - chr2.1:46014986-46015005 MS.gene068904:intron 25.0%
!!! AGTCTTCATTGATTTAGAAA+AGG + chr2.1:46014418-46014437 None:intergenic 25.0%
!!! ATGAAAAAGTATTAAGTCCA+AGG + chr2.1:46014804-46014823 None:intergenic 25.0%
!!! TGCATATTTTTATTGAACCT+TGG - chr2.1:46014461-46014480 MS.gene068904:CDS 25.0%
AATACTCCCATTATAGAAGA+TGG + chr2.1:46015654-46015673 None:intergenic 30.0%
AGCTTACCATCTTCTATAAT+GGG - chr2.1:46015645-46015664 MS.gene068904:intron 30.0%
AGTAGATCAAAGAAAACTGT+AGG + chr2.1:46014251-46014270 None:intergenic 30.0%
CAGTGTATATGCTACATTAA+TGG + chr2.1:46015323-46015342 None:intergenic 30.0%
GTGTATATGCTACATTAATG+GGG + chr2.1:46015321-46015340 None:intergenic 30.0%
TAATTTCGCTTATGACAGAA+AGG + chr2.1:46014507-46014526 None:intergenic 30.0%
TCTCGCTGAAAAATATGTAA+TGG + chr2.1:46015152-46015171 None:intergenic 30.0%
TCTGTTCTGTATGAAATCAT+TGG - chr2.1:46014948-46014967 MS.gene068904:intron 30.0%
TGAATAATTGTTCACTAGCT+TGG - chr2.1:46013958-46013977 MS.gene068904:CDS 30.0%
TGAGTTGTATTAGCAATCAT+TGG + chr2.1:46015626-46015645 None:intergenic 30.0%
TGGATTGCTAACATTATCAT+AGG - chr2.1:46014392-46014411 MS.gene068904:intron 30.0%
TGGTCTATGTCAGATATAAT+AGG + chr2.1:46014644-46014663 None:intergenic 30.0%
TGTGTATAACCAAATTGAAC+GGG - chr2.1:46015086-46015105 MS.gene068904:intron 30.0%
TTATGTTTGTACTACAGGTT+GGG - chr2.1:46016243-46016262 MS.gene068904:intron 30.0%
TTCAAAGAACTTAGTCATCA+AGG - chr2.1:46015450-46015469 MS.gene068904:intron 30.0%
TTCAAATGTTTCTTCAGAAG+CGG - chr2.1:46016149-46016168 MS.gene068904:intron 30.0%
TTTATGTTTGTACTACAGGT+TGG - chr2.1:46016242-46016261 MS.gene068904:intron 30.0%
! ATAGATAACAGGGGATATTT+TGG - chr2.1:46014719-46014738 MS.gene068904:intron 30.0%
! CTTCTTTTCAATTCAACACT+TGG - chr2.1:46014372-46014391 MS.gene068904:intron 30.0%
! GCTTTTTGTGTTTGTTTGAA+TGG - chr2.1:46015482-46015501 MS.gene068904:intron 30.0%
! GTTGCAGATTTTTATTGAAC+TGG + chr2.1:46015296-46015315 None:intergenic 30.0%
! TGATTGAACAACAAAAGCAT+AGG - chr2.1:46014885-46014904 MS.gene068904:intron 30.0%
! TTTTTCTGAATTCTGAACCT+TGG - chr2.1:46014784-46014803 MS.gene068904:intron 30.0%
!! TATTTTTCAGCGAGATTTTG+AGG - chr2.1:46015157-46015176 MS.gene068904:intron 30.0%
!!! TTTTGGTTTTTTGGCTTTTC+TGG - chr2.1:46014736-46014755 MS.gene068904:intron 30.0%
ACACAAAAATAGGGTCTTGA+AGG + chr2.1:46013914-46013933 None:intergenic 35.0%
AGGCTTCTTCATGCATATTA+TGG - chr2.1:46015177-46015196 MS.gene068904:intron 35.0%
AGTAGTGACTCTATTGTGAA+AGG - chr2.1:46014295-46014314 MS.gene068904:intron 35.0%
ATAGAACTCTTTGCAGGAAA+GGG + chr2.1:46015971-46015990 None:intergenic 35.0%
ATATTATCAGCAGTTCCATG+TGG + chr2.1:46015929-46015948 None:intergenic 35.0%
ATTTCGATTGTGTCGTAACA+TGG + chr2.1:46015765-46015784 None:intergenic 35.0%
CACACGAGACGTATAAATTA+TGG + chr2.1:46016078-46016097 None:intergenic 35.0%
CAGCTTACCATCTTCTATAA+TGG - chr2.1:46015644-46015663 MS.gene068904:intron 35.0%
CATAATTTATACGTCTCGTG+TGG - chr2.1:46016076-46016095 MS.gene068904:intron 35.0%
GTAGTGACTCTATTGTGAAA+GGG - chr2.1:46014296-46014315 MS.gene068904:intron 35.0%
GTGTATAACCAAATTGAACG+GGG - chr2.1:46015087-46015106 MS.gene068904:intron 35.0%
TAGTCGAAGATATGACTAGT+AGG + chr2.1:46016019-46016038 None:intergenic 35.0%
TGAAACACTGGAAATCTCAA+TGG + chr2.1:46014914-46014933 None:intergenic 35.0%
! CACAAAATTTGAAACATGGC+AGG + chr2.1:46016193-46016212 None:intergenic 35.0%
! GTCAGATATAATAGGTGTTG+TGG + chr2.1:46014636-46014655 None:intergenic 35.0%
!! GGGAGTATTTGTATCTATGA+TGG - chr2.1:46015665-46015684 MS.gene068904:intron 35.0%
!! TTCCACGTTTGTGTTTTGAA+GGG - chr2.1:46015270-46015289 MS.gene068904:intron 35.0%
!! TTTCCACGTTTGTGTTTTGA+AGG - chr2.1:46015269-46015288 MS.gene068904:intron 35.0%
!!! CAGGGGATATTTTGGTTTTT+TGG - chr2.1:46014727-46014746 MS.gene068904:intron 35.0%
!!! TTGTCAGCTACCTTTGTTTT+TGG + chr2.1:46016294-46016313 None:intergenic 35.0%
AACAAAGGTAGCTGACAACA+TGG - chr2.1:46016296-46016315 MS.gene068904:CDS 40.0%
ACCTTGGTATGTATCCTTCA+CGG - chr2.1:46014477-46014496 MS.gene068904:CDS 40.0%
AGACCACATCACCATGTTTA+TGG - chr2.1:46014658-46014677 MS.gene068904:intron 40.0%
AGCCTAGAAAACTCAGTACA+AGG + chr2.1:46015388-46015407 None:intergenic 40.0%
AGTAGGAGTCTTCTTCTTCA+AGG + chr2.1:46014326-46014345 None:intergenic 40.0%
ATGCTACACAACCGTGATTA+AGG + chr2.1:46015232-46015251 None:intergenic 40.0%
ATTGGATTCGTTCCAAATGC+TGG + chr2.1:46015608-46015627 None:intergenic 40.0%
CATCTGCAGATAGATAACAG+GGG - chr2.1:46014710-46014729 MS.gene068904:intron 40.0%
CCAACAATCCACCATAAACA+TGG + chr2.1:46014672-46014691 None:intergenic 40.0%
CCATCTGCAGATAGATAACA+GGG - chr2.1:46014709-46014728 MS.gene068904:intron 40.0%
CTTCTTCGTTTCACTAGACT+TGG + chr2.1:46015849-46015868 None:intergenic 40.0%
GACAACATGGAGAACAACTT+CGG - chr2.1:46016309-46016328 MS.gene068904:CDS 40.0%
GATAGAACTCTTTGCAGGAA+AGG + chr2.1:46015972-46015991 None:intergenic 40.0%
GCAGTCAAAAACTGTTGATG+CGG - chr2.1:46015206-46015225 MS.gene068904:intron 40.0%
GGTTTCAATGAAGGAACCAA+TGG - chr2.1:46016353-46016372 MS.gene068904:CDS 40.0%
GTAGGAGTCTTCTTCTTCAA+GGG + chr2.1:46014325-46014344 None:intergenic 40.0%
GTTGGCTGAAATTCTTCCAT+TGG + chr2.1:46016372-46016391 None:intergenic 40.0%
TATCTGCAGATGGCAGATTA+TGG + chr2.1:46014702-46014721 None:intergenic 40.0%
TCATACAGAACAGAACAGAG+AGG + chr2.1:46014942-46014961 None:intergenic 40.0%
TCCTTCATTGAAACCGAATC+TGG + chr2.1:46016348-46016367 None:intergenic 40.0%
TGATAATATCGCTTCACCAC+AGG - chr2.1:46015940-46015959 MS.gene068904:intron 40.0%
TGATGGAATTCCTGCAGAAA+AGG - chr2.1:46015682-46015701 MS.gene068904:intron 40.0%
TTTAGGTCAATGCCAGCATT+TGG - chr2.1:46015593-46015612 MS.gene068904:intron 40.0%
! ACTTTTGTCCCCGTTCAATT+TGG + chr2.1:46015098-46015117 None:intergenic 40.0%
! ATAATAGGTGTTGTGGCCTA+CGG + chr2.1:46014629-46014648 None:intergenic 40.0%
! CTCCTTGTACTGAGTTTTCT+AGG - chr2.1:46015383-46015402 MS.gene068904:intron 40.0%
! TCTAGAACACTAAACTGCTC+TGG + chr2.1:46013727-46013746 None:intergenic 40.0%
! TCTTCTCCTATTGCTGTTGA+TGG - chr2.1:46013748-46013767 MS.gene068904:CDS 40.0%
!! CCATGTTTATGGTGGATTGT+TGG - chr2.1:46014669-46014688 MS.gene068904:intron 40.0%
AACAGGTGAAGGAACAGGAA+CGG + chr2.1:46015888-46015907 None:intergenic 45.0%
ACCGTGAAGGATACATACCA+AGG + chr2.1:46014481-46014500 None:intergenic 45.0%
AGTGAATGTCTGCGTGCTAT+TGG + chr2.1:46016130-46016149 None:intergenic 45.0%
CCACATCACCATGTTTATGG+TGG - chr2.1:46014661-46014680 MS.gene068904:intron 45.0%
CCCTGTTATCTATCTGCAGA+TGG + chr2.1:46014712-46014731 None:intergenic 45.0%
CTAGCACCATCAACAGCAAT+AGG + chr2.1:46013757-46013776 None:intergenic 45.0%
CTAGTTCCAACATGGTTGAG+GGG - chr2.1:46013773-46013792 MS.gene068904:CDS 45.0%
CTGCAAAGAGTTCTATCTGC+AGG - chr2.1:46015975-46015994 MS.gene068904:intron 45.0%
CTGCAGATAGAACTCTTTGC+AGG + chr2.1:46015977-46015996 None:intergenic 45.0%
GCCATCTGCAGATAGATAAC+AGG - chr2.1:46014708-46014727 MS.gene068904:intron 45.0%
GCTAGTTCCAACATGGTTGA+GGG - chr2.1:46013772-46013791 MS.gene068904:CDS 45.0%
TCCTTCCTCGCCAAAAACAA+AGG - chr2.1:46016281-46016300 MS.gene068904:intron 45.0%
TGCTAGTTCCAACATGGTTG+AGG - chr2.1:46013771-46013790 MS.gene068904:CDS 45.0%
TGCTGACAATTCGCCAGATT+CGG - chr2.1:46016332-46016351 MS.gene068904:CDS 45.0%
TGTTGATGCGGCCTTAATCA+CGG - chr2.1:46015218-46015237 MS.gene068904:intron 45.0%
TTCCTTCACCTGTTCCTTCA+AGG - chr2.1:46015894-46015913 MS.gene068904:intron 45.0%
! AGAGAGGTATGCTGAAACAC+TGG + chr2.1:46014926-46014945 None:intergenic 45.0%
! CCACCATAAACATGGTGATG+TGG + chr2.1:46014664-46014683 None:intergenic 45.0%
! GCCAGATTCGGTTTCAATGA+AGG - chr2.1:46016344-46016363 MS.gene068904:CDS 45.0%
! TGATGGTGCTAGTTCCAACA+TGG - chr2.1:46013765-46013784 MS.gene068904:CDS 45.0%
!!! ACCTTTGTTTTTGGCGAGGA+AGG + chr2.1:46016285-46016304 None:intergenic 45.0%
!!! AGCTACCTTTGTTTTTGGCG+AGG + chr2.1:46016289-46016308 None:intergenic 45.0%
!!! GTTTTTGGCGAGGAAGGATA+GGG + chr2.1:46016279-46016298 None:intergenic 45.0%
!!! TGTTTTTGGCGAGGAAGGAT+AGG + chr2.1:46016280-46016299 None:intergenic 45.0%
ACAGGTGAAGGAACAGGAAC+GGG + chr2.1:46015887-46015906 None:intergenic 50.0%
AGATGAGCACCACCAATGTG+CGG - chr2.1:46014594-46014613 MS.gene068904:intron 50.0%
AGTTCTATCTGCAGGCTGCA+AGG - chr2.1:46015983-46016002 MS.gene068904:intron 50.0%
CATTGACCCCTCAACCATGT+TGG + chr2.1:46013782-46013801 None:intergenic 50.0%
CTGCAGATGGCAGATTATGG+TGG + chr2.1:46014699-46014718 None:intergenic 50.0%
GAACTCTTTGCAGGAAAGGG+AGG + chr2.1:46015968-46015987 None:intergenic 50.0%
GAAGAAGGCCTTGAAGGAAC+AGG + chr2.1:46015905-46015924 None:intergenic 50.0%
GAAGGAACAGGTGAAGGAAC+AGG + chr2.1:46015893-46015912 None:intergenic 50.0%
GACAGAAAGGTCAACCGTGA+AGG + chr2.1:46014494-46014513 None:intergenic 50.0%
GGCCCTTCAAAACACAAACG+TGG + chr2.1:46015275-46015294 None:intergenic 50.0%
CAGTGTAGCGTAGCTGCGTA+GGG + chr2.1:46015711-46015730 None:intergenic 55.0%
GCAGTTCCATGTGGCGAAGA+AGG + chr2.1:46015920-46015939 None:intergenic 55.0%
GGCCTTGAAGGAACAGGTGA+AGG + chr2.1:46015899-46015918 None:intergenic 55.0%
TCAAGGCCTTCTTCGCCACA+TGG - chr2.1:46015911-46015930 MS.gene068904:intron 55.0%
TCAGTGTAGCGTAGCTGCGT+AGG + chr2.1:46015712-46015731 None:intergenic 55.0%
TGTGGCGAAGAAGGCCTTGA+AGG + chr2.1:46015911-46015930 None:intergenic 55.0%
TTCTTCAGAAGCGGCGAGAC+AGG - chr2.1:46016158-46016177 MS.gene068904:intron 55.0%
! CGTAGGGCTACCTTTTCTGC+AGG + chr2.1:46015695-46015714 None:intergenic 55.0%
TAGCTGCCACCGCACATTGG+TGG + chr2.1:46014606-46014625 None:intergenic 60.0%
TGAGCACCACCAATGTGCGG+TGG - chr2.1:46014597-46014616 MS.gene068904:intron 60.0%
CGGTAGCTGCCACCGCACAT+TGG + chr2.1:46014609-46014628 None:intergenic 65.0%
TGTGCGGTGGCAGCTACCGT+AGG - chr2.1:46014610-46014629 MS.gene068904:intron 65.0%
!! GCAGGAAAGGGAGGTGCCTG+TGG + chr2.1:46015959-46015978 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 46013697 46016407 46013697 ID=MS.gene068904
chr2.1 mRNA 46013697 46016407 46013697 ID=MS.gene068904.t1;Parent=MS.gene068904
chr2.1 exon 46016283 46016407 46016283 ID=MS.gene068904.t1.exon1;Parent=MS.gene068904.t1
chr2.1 CDS 46016283 46016407 46016283 ID=cds.MS.gene068904.t1;Parent=MS.gene068904.t1
chr2.1 exon 46014401 46014506 46014401 ID=MS.gene068904.t1.exon2;Parent=MS.gene068904.t1
chr2.1 CDS 46014401 46014506 46014401 ID=cds.MS.gene068904.t1;Parent=MS.gene068904.t1
chr2.1 exon 46014100 46014292 46014100 ID=MS.gene068904.t1.exon3;Parent=MS.gene068904.t1
chr2.1 CDS 46014100 46014292 46014100 ID=cds.MS.gene068904.t1;Parent=MS.gene068904.t1
chr2.1 exon 46013925 46013982 46013925 ID=MS.gene068904.t1.exon4;Parent=MS.gene068904.t1
chr2.1 CDS 46013925 46013982 46013925 ID=cds.MS.gene068904.t1;Parent=MS.gene068904.t1
chr2.1 exon 46013697 46013844 46013697 ID=MS.gene068904.t1.exon5;Parent=MS.gene068904.t1
chr2.1 CDS 46013697 46013844 46013697 ID=cds.MS.gene068904.t1;Parent=MS.gene068904.t1
Gene Sequence

>MS.gene068904

ATGGATGGTCTTACTGTTAAGCTTGAACCAGAGCAGTTTAGTGTTCTAGAATCTTCTCCTATTGCTGTTGATGGTGCTAGTTCCAACATGGTTGAGGGGTCAATGATGAATTCTTCAGCAAACAAGTAAGTGTTTGATATTTTCACCAAAAAAAAGCATGTTTTTGATTACTGTTGTTTTATGTGTTTCACTTTTTATGTTTATACAACATGTTCCTTCAAGACCCTATTTTTGTGTTTCCATTTTTTGTTTCTGTTTTGATGAATAATTGTTCACTAGCTTGGTTATTTTAATTTTGGTTGAGATTTTTTTTTTTTTTGGATTCCATAAAAACTTTAGATGAACAATGAACTAAGGTGTTTCTTTTCCAATTTTTGTACCTTAAATGGTATCAATTTGTATGAGATGAGTTCAAATATACTTGTAACCTTTAGTTTTTTGAATTAAAATTGTTCTAATGTGTTGAGGGAACTTGTTAAACTTAATTATAATGATCTGAACTGATGCAATTTGACTCTATGAAAAACGAAATTTTCGGTTAAATGGTTTCTCCTACAGTTTTCTTTGATCTACTTTTCTTTGTTTCTTTTGTGAATAGAGTAGTGACTCTATTGTGAAAGGGAAACCCTTGAAGAAGAAGACTCCTACTCTTTTCGATTTTCATATAAAATTCTTCTTCTTTTCAATTCAACACTTGGATTGCTAACATTATCATAGGCCTTTTCTAAATCAATGAAGACTGTGTAAGTTTTGCTTTATCGTTCTGCATATTTTTATTGAACCTTGGTATGTATCCTTCACGGTTGACCTTTCTGTCATAAGCGAAATTAATGCTGTTGTATGCAAGTCAAATTTTTCGAACATTCTCTCAAATTACGCTTTTCATATTGTAAAATTAGATGAGCACCACCAATGTGCGGTGGCAGCTACCGTAGGCCACAACACCTATTATATCTGACATAGACCACATCACCATGTTTATGGTGGATTGTTGGCTTGCCACCATAATCTGCCATCTGCAGATAGATAACAGGGGATATTTTGGTTTTTTGGCTTTTCTGGTTAGCATTAAAAATCAAATACACGATTTTTCTGAATTCTGAACCTTGGACTTAATACTTTTTCATTTCACCAACTTTTTAAATAACTAAGATCTTTGCTTCAGAAATGAAGACACGATTTTTTATTTGATTGAACAACAAAAGCATAGGAAACCATTGAGATTTCCAGTGTTTCAGCATACCTCTCTGTTCTGTTCTGTATGAAATCATTGGAAGTCTCACATGTAAAGATATGTCATTGTTTTTCATGGCAGTATAGTTTTACTTTGCTGTTTGTAGACAAACTTTAACACAGAAAAACTTTTAAGCCATAAGTTGATGAAATTCATGTGTATAACCAAATTGAACGGGGACAAAAGTTTATGATGATAATCCATTCAAATGACTTATTCCATTACATATTTTTCAGCGAGATTTTGAGGCTTCTTCATGCATATTATGGAGAATTGCAGTCAAAAACTGTTGATGCGGCCTTAATCACGGTTGTGTAGCATTAAAAACTGTTTGAGCTTTTCCACGTTTGTGTTTTGAAGGGCCAGTTCAATAAAAATCTGCAACTTCCCCATTAATGTAGCATATACACTGATACATATATTTAGGTTTATCAGAAATAACATCTTGAAGACTCCTTGTACTGAGTTTTCTAGGCTTGACTTCAAAATCAATTTTTGACATAACTCATCTCTTATTACTTCAAAGAACTTAGTCATCAAGGCTTATCTATGCTTTTTGTGTTTGTTTGAATGGTTTTTAATTGTTGTTTTTTTGGTTATTTTTATTATTATCATTATTACTATTTTAGTAATCAAAAACTGATTACTGTATTATTTTCTCTTTTAGGTCAATGCCAGCATTTGGAACGAATCCAATGATTGCTAATACAACTCAGCTTACCATCTTCTATAATGGGAGTATTTGTATCTATGATGGAATTCCTGCAGAAAAGGTAGCCCTACGCAGCTACGCTACACTGAGATGATTAGTGAAACTTACAGCTCTATTTTCCATGTTACGACACAATCGAAATCATATTTAACTCTCTATATACTAACAGGTGCAAGAAATAATGCGCATTGCTGCTGCTGCTGCCAAGTCTAGTGAAACGAAGAAGATTGTGAAACAATCTCCCGTTCCTGTTCCTTCACCTGTTCCTTCAAGGCCTTCTTCGCCACATGGAACTGCTGATAATATCGCTTCACCACAGGCACCTCCCTTTCCTGCAAAGAGTTCTATCTGCAGGCTGCAAGGTGTGAATTCTCCTACTAGTCATATCTTCGACTATTTAGTTGTTTGAACTTGAATAGTCACTTAATGTCACCATAATTTATACGTCTCGTGTGGTTTTTCTTGATATTTCTCTTCAGAATTTCCAATAGCACGCAGACATTCACTTCAAATGTTTCTTCAGAAGCGGCGAGACAGGTACTGTCTACCTGCCATGTTTCAAATTTTGTGTATGACTACTAGTTTTCTTATTTGCATAATTTATGTTTGTACTACAGGTTGGGTAGTAAAGCTCCCTATCCTTCCTCGCCAAAAACAAAGGTAGCTGACAACATGGAGAACAACTTCGGTGCTGACAATTCGCCAGATTCGGTTTCAATGAAGGAACCAATGGAAGAATTTCAGCCAACTATATCTGCATCTTGA
Protein sequence

>MS.gene068904.t1

MDGLTVKLEPEQFSVLESSPIAVDGASSNMVEGSMMNSSANKSMPAFGTNPMIANTTQLTIFYNGSICIYDGIPAEKVQEIMRIAAAAAKSSETKKIVKQSPVPVPSPVPSRPSSPHGTADNIASPQAPPFPAKSSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPKTKVADNMENNFGADNSPDSVSMKEPMEEFQPTISAS