Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26736.t1 | XP_003609915.1 | 96.1 | 178 | 7 | 0 | 1 | 178 | 1 | 178 | 2.40E-86 | 328.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26736.t1 | Q9C5K8 | 41.0 | 117 | 63 | 4 | 45 | 159 | 57 | 169 | 1.7e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26736.t1 | G7JR45 | 96.1 | 178 | 7 | 0 | 1 | 178 | 1 | 178 | 1.7e-86 | 328.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26736.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26736 | MS.gene64493 | PPI |
| MS.gene26736 | MS.gene26683 | PPI |
| MS.gene26736 | MS.gene037141 | PPI |
| MS.gene26736 | MS.gene012194 | PPI |
| MS.gene057422 | MS.gene26736 | PPI |
| MS.gene26736 | MS.gene051780 | PPI |
| MS.gene26736 | MS.gene24789 | PPI |
| MS.gene26736 | MS.gene025273 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26736.t1 | MTR_4g124360 | 96.067 | 178 | 7 | 0 | 1 | 178 | 1 | 178 | 4.33e-125 | 349 |
| MS.gene26736.t1 | MTR_4g124360 | 95.714 | 140 | 6 | 0 | 39 | 178 | 1 | 140 | 5.21e-89 | 256 |
| MS.gene26736.t1 | MTR_2g044910 | 55.782 | 147 | 60 | 3 | 25 | 168 | 38 | 182 | 1.69e-46 | 151 |
| MS.gene26736.t1 | MTR_2g044910 | 56.028 | 141 | 57 | 3 | 31 | 168 | 1 | 139 | 1.69e-45 | 147 |
| MS.gene26736.t1 | MTR_2g044910 | 46.457 | 127 | 62 | 3 | 25 | 147 | 38 | 162 | 2.25e-26 | 99.0 |
| MS.gene26736.t1 | MTR_5g013515 | 34.848 | 132 | 69 | 2 | 41 | 168 | 10 | 128 | 6.59e-17 | 73.6 |
| MS.gene26736.t1 | MTR_5g013520 | 30.328 | 122 | 70 | 2 | 41 | 162 | 11 | 117 | 2.73e-13 | 64.3 |
| MS.gene26736.t1 | MTR_5g013530 | 30.081 | 123 | 71 | 2 | 41 | 163 | 18 | 125 | 4.07e-12 | 61.2 |
| MS.gene26736.t1 | MTR_5g013530 | 30.081 | 123 | 71 | 2 | 41 | 163 | 40 | 147 | 5.27e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26736.t1 | AT5G20900 | 41.732 | 127 | 54 | 6 | 45 | 162 | 57 | 172 | 3.13e-18 | 78.2 |
| MS.gene26736.t1 | AT3G43440 | 36.667 | 120 | 58 | 3 | 44 | 163 | 130 | 231 | 1.45e-16 | 75.1 |
| MS.gene26736.t1 | AT3G43440 | 34.426 | 122 | 62 | 3 | 42 | 163 | 42 | 145 | 4.90e-16 | 71.6 |
| MS.gene26736.t1 | AT1G19180 | 35.135 | 111 | 64 | 1 | 43 | 153 | 58 | 160 | 1.04e-12 | 63.5 |
| MS.gene26736.t1 | AT1G19180 | 35.135 | 111 | 64 | 1 | 43 | 153 | 124 | 226 | 3.80e-12 | 63.2 |
| MS.gene26736.t1 | AT1G19180 | 35.135 | 111 | 64 | 1 | 43 | 153 | 124 | 226 | 3.80e-12 | 63.2 |
Find 43 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAAGTGGCATCATTAC+TGG | 0.158225 | 8.3:-4912105 | None:intergenic |
| CTGAGAAGAGTTCCATTTGC+AGG | 0.345657 | 8.3:+4911496 | MS.gene26736:CDS |
| TTCTTGAGAAGAGGAGAATC+AGG | 0.349802 | 8.3:+4911907 | MS.gene26736:CDS |
| AGTGACTGTCTGCGTGCTAA+TGG | 0.374634 | 8.3:-4911876 | None:intergenic |
| TGGAGAAGAAGGGGTGATAC+TGG | 0.385179 | 8.3:-4911421 | None:intergenic |
| TTTGATGATGAAGAGGTATA+AGG | 0.389455 | 8.3:-4912051 | None:intergenic |
| TTCAGGCCATTGTCAACATC+TGG | 0.403016 | 8.3:+4911148 | MS.gene26736:intron |
| AGCATTTCTCTGCTGCTAAC+TGG | 0.409603 | 8.3:+4909831 | MS.gene26736:CDS |
| CCTCAAGTGGCATCATTACT+GGG | 0.449490 | 8.3:-4912104 | None:intergenic |
| GAGTTTCCTTGTGGAGAAGA+AGG | 0.454205 | 8.3:-4911432 | None:intergenic |
| AACACCTTGCATCCTGCAAA+TGG | 0.468674 | 8.3:-4911508 | None:intergenic |
| TGATGGAATTCCTGCAGAAA+AGG | 0.473301 | 8.3:+4911237 | MS.gene26736:CDS |
| ACTGGAAAAGAGTGAATTGA+AGG | 0.475980 | 8.3:-4911403 | None:intergenic |
| ATGGAACTCTTCTCAGCAGC+AGG | 0.483824 | 8.3:-4911489 | None:intergenic |
| CCAGTAATGATGCCACTTGA+GGG | 0.495749 | 8.3:+4912105 | MS.gene26736:CDS |
| CATTTCAGATGACTTGGCAT+TGG | 0.507246 | 8.3:-4911367 | None:intergenic |
| ATGGCAAACTGAGTTGTACC+AGG | 0.519158 | 8.3:-4911187 | None:intergenic |
| TTCAAAGGTTTCTTGAGAAG+AGG | 0.521134 | 8.3:+4911898 | MS.gene26736:CDS |
| AGTTTCCTTGTGGAGAAGAA+GGG | 0.523527 | 8.3:-4911431 | None:intergenic |
| AAGTCATCTGAAATGAAAAG+TGG | 0.529700 | 8.3:+4911375 | MS.gene26736:CDS |
| CACGCAGACAGTCACTTCAA+AGG | 0.541667 | 8.3:+4911883 | MS.gene26736:CDS |
| CCCAGTAATGATGCCACTTG+AGG | 0.545434 | 8.3:+4912104 | MS.gene26736:CDS |
| GAGTACTATTTGCCCTCAAG+TGG | 0.556021 | 8.3:-4912117 | None:intergenic |
| CAGCAGGAAAACCAACTGAT+GGG | 0.556381 | 8.3:-4911473 | None:intergenic |
| AGTTCCATTTGCAGGATGCA+AGG | 0.556537 | 8.3:+4911504 | MS.gene26736:CDS |
| GCAGCAGGAAAACCAACTGA+TGG | 0.557635 | 8.3:-4911474 | None:intergenic |
| GCATCATTACTGGGCTGAAG+TGG | 0.565521 | 8.3:-4912095 | None:intergenic |
| GGTGCATGAGATAATGATGA+TGG | 0.567231 | 8.3:+4911338 | MS.gene26736:intron |
| GGAAGCATGTGTGTATATGA+TGG | 0.578130 | 8.3:+4911220 | MS.gene26736:CDS |
| GGACTAAATGCAATGACCCC+TGG | 0.578930 | 8.3:+4911169 | MS.gene26736:CDS |
| CATGCTTCCATTGTAGAGGA+TGG | 0.585189 | 8.3:-4911206 | None:intergenic |
| GATACTATTAGAAGTAGTCA+TGG | 0.588033 | 8.3:-4909765 | None:intergenic |
| CAGTTTGCCATCCTCTACAA+TGG | 0.597338 | 8.3:+4911199 | MS.gene26736:CDS |
| CTGGAAAAGAGTGAATTGAA+GGG | 0.599191 | 8.3:-4911402 | None:intergenic |
| CACACATGCTTCCATTGTAG+AGG | 0.599209 | 8.3:-4911210 | None:intergenic |
| GTTTCCTTGTGGAGAAGAAG+GGG | 0.603228 | 8.3:-4911430 | None:intergenic |
| AGCAGGAAAACCAACTGATG+GGG | 0.615564 | 8.3:-4911472 | None:intergenic |
| TTTAGTCCAGATGTTGACAA+TGG | 0.630788 | 8.3:-4911154 | None:intergenic |
| GCAGGAAAACCAACTGATGG+GGG | 0.646756 | 8.3:-4911471 | None:intergenic |
| AAATTGTCAGAGTTTCCTTG+TGG | 0.648404 | 8.3:-4911441 | None:intergenic |
| TGGCAAACTGAGTTGTACCA+GGG | 0.668253 | 8.3:-4911186 | None:intergenic |
| ATCACCCCTTCTTCTCCACA+AGG | 0.677373 | 8.3:+4911426 | MS.gene26736:CDS |
| GGCAAACTGAGTTGTACCAG+GGG | 0.692504 | 8.3:-4911185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTATAT+AGG | + | chr8.3:4910553-4910572 | MS.gene26736:intron | 0.0% |
| !! | TTATAATTATTATGTTTAGT+TGG | - | chr8.3:4910356-4910375 | None:intergenic | 10.0% |
| !! | TTATTAAACATACAAAAAAA+TGG | - | chr8.3:4912013-4912032 | None:intergenic | 10.0% |
| !!! | TTTTTTGTATGTTTAATAAA+GGG | + | chr8.3:4912014-4912033 | MS.gene26736:intron | 10.0% |
| !!! | TTTTTTTGTATGTTTAATAA+AGG | + | chr8.3:4912013-4912032 | MS.gene26736:intron | 10.0% |
| !! | AAAAATAACTATAGATACTT+CGG | + | chr8.3:4910390-4910409 | MS.gene26736:intron | 15.0% |
| !! | ATACTAATTTAAATCTTCTA+TGG | + | chr8.3:4911823-4911842 | MS.gene26736:intron | 15.0% |
| !! | ATGTATTAGAAAAAATTGAA+AGG | + | chr8.3:4910132-4910151 | MS.gene26736:intron | 15.0% |
| !!! | CATATCAATATATGTATTTT+TGG | + | chr8.3:4909870-4909889 | MS.gene26736:intron | 15.0% |
| !!! | TTAGATCTTGATATTTATTT+TGG | + | chr8.3:4910497-4910516 | MS.gene26736:intron | 15.0% |
| !! | AAAGGACAAAAAAAAAACAT+AGG | - | chr8.3:4910027-4910046 | None:intergenic | 20.0% |
| !! | AAATATGACGAGAATTATTT+CGG | + | chr8.3:4909932-4909951 | MS.gene26736:intron | 20.0% |
| !! | AAGGACAAAAAAAAAACATA+GGG | - | chr8.3:4910026-4910045 | None:intergenic | 20.0% |
| !! | ACAAAAAACACAATCAAATA+TGG | - | chr8.3:4910050-4910069 | None:intergenic | 20.0% |
| !! | ATAACAATCAATTACAACAA+TGG | - | chr8.3:4911968-4911987 | None:intergenic | 20.0% |
| !! | TCAAAATTTGCATTGAAATA+TGG | - | chr8.3:4910905-4910924 | None:intergenic | 20.0% |
| !! | TGAGAAATGTATATATTGTT+TGG | - | chr8.3:4911088-4911107 | None:intergenic | 20.0% |
| !! | TTAAACTCAAAATGAGTTAA+GGG | - | chr8.3:4910664-4910683 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGTTTGTTTTTGT+GGG | - | chr8.3:4911049-4911068 | None:intergenic | 20.0% |
| !!! | ACTAATTTGATCTTTTTAGA+CGG | + | chr8.3:4911669-4911688 | MS.gene26736:intron | 20.0% |
| !!! | AGTGATTATGTTAGTTTTTA+GGG | + | chr8.3:4910599-4910618 | MS.gene26736:intron | 20.0% |
| !!! | CGTTTAAAATCAATTTTTGT+CGG | + | chr8.3:4911747-4911766 | MS.gene26736:intron | 20.0% |
| !!! | TAAGAATCCACTTTTTTTAT+AGG | + | chr8.3:4910681-4910700 | MS.gene26736:intron | 20.0% |
| !!! | TAAGTTTAAGTTTGTTTTTG+TGG | - | chr8.3:4911050-4911069 | None:intergenic | 20.0% |
| !!! | TAGTGATTATGTTAGTTTTT+AGG | + | chr8.3:4910598-4910617 | MS.gene26736:intron | 20.0% |
| !!! | TATTTTGCCTATAAAAAAAG+TGG | - | chr8.3:4910691-4910710 | None:intergenic | 20.0% |
| !!! | TCAATTTCAATTCTTGTTAT+AGG | + | chr8.3:4910446-4910465 | MS.gene26736:intron | 20.0% |
| ! | AAACACAATCAAATATGGAA+AGG | - | chr8.3:4910045-4910064 | None:intergenic | 25.0% |
| ! | CTTAAACTCAAAATGAGTTA+AGG | - | chr8.3:4910665-4910684 | None:intergenic | 25.0% |
| ! | GTAGGTATTCATGATAATAA+TGG | - | chr8.3:4910073-4910092 | None:intergenic | 25.0% |
| ! | TAGGCAAAATATTAGTAAGT+TGG | + | chr8.3:4910700-4910719 | MS.gene26736:intron | 25.0% |
| ! | TTAATCCTATACTTAGAGTT+CGG | + | chr8.3:4909895-4909914 | MS.gene26736:intron | 25.0% |
| ! | TTTAAATCTTCTATGGCTTT+CGG | + | chr8.3:4911830-4911849 | MS.gene26736:intron | 25.0% |
| !! | AATTCTTGTTATAGGATTGT+TGG | + | chr8.3:4910454-4910473 | MS.gene26736:intron | 25.0% |
| !! | TCTTTGCTTGTTAACAATTT+AGG | + | chr8.3:4911317-4911336 | MS.gene26736:intron | 25.0% |
| !!! | AAATCAAAAGTGCTTAAAGT+AGG | - | chr8.3:4910764-4910783 | None:intergenic | 25.0% |
| !!! | TAGTGAGAAAGTTCATTTTT+CGG | - | chr8.3:4911653-4911672 | None:intergenic | 25.0% |
| AAAAAAAAAACATAGGGCTG+TGG | - | chr8.3:4910020-4910039 | None:intergenic | 30.0% | |
| AATAACTATAGATACTTCGG+TGG | + | chr8.3:4910393-4910412 | MS.gene26736:intron | 30.0% | |
| ACTAAACATAATCCCAAAGA+TGG | - | chr8.3:4910239-4910258 | None:intergenic | 30.0% | |
| AGAGAATTCACAACCAAAAT+TGG | + | chr8.3:4911624-4911643 | MS.gene26736:intron | 30.0% | |
| ATTATCCAATCAAGATCAGA+TGG | - | chr8.3:4910969-4910988 | None:intergenic | 30.0% | |
| GAATGATCTTGAAATTGAAC+AGG | + | chr8.3:4910154-4910173 | MS.gene26736:intron | 30.0% | |
| TACTACTACTACTACTATAG+AGG | + | chr8.3:4911547-4911566 | MS.gene26736:intron | 30.0% | |
| TGTTTAGTATGAACTTGAGA+TGG | + | chr8.3:4910251-4910270 | MS.gene26736:intron | 30.0% | |
| ! | AAAATCAATTTTTGTCGGTG+CGG | + | chr8.3:4911752-4911771 | MS.gene26736:intron | 30.0% |
| ! | AAGGGGTTTTTATTAAGCAT+AGG | + | chr8.3:4910098-4910117 | MS.gene26736:intron | 30.0% |
| ! | AAGTCATCTGAAATGAAAAG+TGG | + | chr8.3:4911375-4911394 | MS.gene26736:CDS | 30.0% |
| ! | ACTTTTCATTTCAGATGACT+TGG | - | chr8.3:4911376-4911395 | None:intergenic | 30.0% |
| ! | CTTAATAAAAACCCCTTTTG+AGG | - | chr8.3:4910095-4910114 | None:intergenic | 30.0% |
| ! | TTGATGAAGAAGTGTATCTT+TGG | - | chr8.3:4911780-4911799 | None:intergenic | 30.0% |
| ! | TTGTTATAGGATTGTTGGTT+GGG | + | chr8.3:4910459-4910478 | MS.gene26736:intron | 30.0% |
| !! | CATTTTTCGGTTTCCAATTT+TGG | - | chr8.3:4911640-4911659 | None:intergenic | 30.0% |
| !! | TGAACTTTGAAACCATCTTT+GGG | + | chr8.3:4910224-4910243 | MS.gene26736:intron | 30.0% |
| !! | TTGAACTTTGAAACCATCTT+TGG | + | chr8.3:4910223-4910242 | MS.gene26736:intron | 30.0% |
| !! | TTTGATGATGAAGAGGTATA+AGG | - | chr8.3:4912054-4912073 | None:intergenic | 30.0% |
| !!! | AAGTTTGTTTTTGTGGGATT+TGG | - | chr8.3:4911043-4911062 | None:intergenic | 30.0% |
| AAAGTAAACTAGTGAAGTGC+TGG | - | chr8.3:4911291-4911310 | None:intergenic | 35.0% | |
| AAATTGTCAGAGTTTCCTTG+TGG | - | chr8.3:4911444-4911463 | None:intergenic | 35.0% | |
| ACTGGAAAAGAGTGAATTGA+AGG | - | chr8.3:4911406-4911425 | None:intergenic | 35.0% | |
| ATGAATACCTACCTCAAAAG+GGG | + | chr8.3:4910081-4910100 | MS.gene26736:intron | 35.0% | |
| CATGAATACCTACCTCAAAA+GGG | + | chr8.3:4910080-4910099 | MS.gene26736:intron | 35.0% | |
| CTGGAAAAGAGTGAATTGAA+GGG | - | chr8.3:4911405-4911424 | None:intergenic | 35.0% | |
| TCATGAATACCTACCTCAAA+AGG | + | chr8.3:4910079-4910098 | MS.gene26736:intron | 35.0% | |
| TCTAAACATGACATGTTGCT+AGG | - | chr8.3:4911941-4911960 | None:intergenic | 35.0% | |
| TGACGAGAATTATTTCGGTT+AGG | + | chr8.3:4909937-4909956 | MS.gene26736:intron | 35.0% | |
| TTCAAAGGTTTCTTGAGAAG+AGG | + | chr8.3:4911898-4911917 | MS.gene26736:CDS | 35.0% | |
| TTGATTGGATAATCTAGACG+TGG | + | chr8.3:4910976-4910995 | MS.gene26736:intron | 35.0% | |
| TTTAGTCCAGATGTTGACAA+TGG | - | chr8.3:4911157-4911176 | None:intergenic | 35.0% | |
| ! | CTTGTTATAGGATTGTTGGT+TGG | + | chr8.3:4910458-4910477 | MS.gene26736:intron | 35.0% |
| ! | TCTGAAGTATGTAGTTCGAA+TGG | - | chr8.3:4910799-4910818 | None:intergenic | 35.0% |
| !! | AAACCGAAAGTGCTTTAAGT+AGG | - | chr8.3:4910641-4910660 | None:intergenic | 35.0% |
| !! | TCAAAAGTGCTTAAAGTAGG+AGG | - | chr8.3:4910761-4910780 | None:intergenic | 35.0% |
| !!! | ATAAAAACCCCTTTTGAGGT+AGG | - | chr8.3:4910091-4910110 | None:intergenic | 35.0% |
| AGTTTCCTTGTGGAGAAGAA+GGG | - | chr8.3:4911434-4911453 | None:intergenic | 40.0% | |
| GGTAAGCACAACAAGTTTCT+TGG | + | chr8.3:4910175-4910194 | MS.gene26736:intron | 40.0% | |
| GGTGCATGAGATAATGATGA+TGG | + | chr8.3:4911338-4911357 | MS.gene26736:intron | 40.0% | |
| TGATGGAATTCCTGCAGAAA+AGG | + | chr8.3:4911237-4911256 | MS.gene26736:CDS | 40.0% | |
| TTCTTGAGAAGAGGAGAATC+AGG | + | chr8.3:4911907-4911926 | MS.gene26736:CDS | 40.0% | |
| TTGAGCCGAACTCTAAGTAT+AGG | - | chr8.3:4909903-4909922 | None:intergenic | 40.0% | |
| ! | CATTTCAGATGACTTGGCAT+TGG | - | chr8.3:4911370-4911389 | None:intergenic | 40.0% |
| ! | CCTCCTACTTAAAGCACTTT+CGG | + | chr8.3:4910635-4910654 | MS.gene26736:intron | 40.0% |
| ! | GGAAGCATGTGTGTATATGA+TGG | + | chr8.3:4911220-4911239 | MS.gene26736:CDS | 40.0% |
| ! | GTAGGTTCTTGTTGTCATGT+TGG | - | chr8.3:4910531-4910550 | None:intergenic | 40.0% |
| ! | GTAGTGTTTACCTTTTCTGC+AGG | - | chr8.3:4911250-4911269 | None:intergenic | 40.0% |
| ! | TTGTTGTCATGTTGGTTGAG+AGG | - | chr8.3:4910523-4910542 | None:intergenic | 40.0% |
| !!! | AGCTGCTTTTGATGATGAAG+AGG | - | chr8.3:4912061-4912080 | None:intergenic | 40.0% |
| AACACCTTGCATCCTGCAAA+TGG | - | chr8.3:4911511-4911530 | None:intergenic | 45.0% | |
| AGATGTTGACAATGGCCTGA+AGG | - | chr8.3:4911149-4911168 | None:intergenic | 45.0% | |
| AGCAGGAAAACCAACTGATG+GGG | - | chr8.3:4911475-4911494 | None:intergenic | 45.0% | |
| AGCATTTCTCTGCTGCTAAC+TGG | + | chr8.3:4909831-4909850 | MS.gene26736:CDS | 45.0% | |
| AGTTCCATTTGCAGGATGCA+AGG | + | chr8.3:4911504-4911523 | MS.gene26736:CDS | 45.0% | |
| ATGGCAAACTGAGTTGTACC+AGG | - | chr8.3:4911190-4911209 | None:intergenic | 45.0% | |
| ATGTTGACAATGGCCTGAAG+GGG | - | chr8.3:4911147-4911166 | None:intergenic | 45.0% | |
| CACACATGCTTCCATTGTAG+AGG | - | chr8.3:4911213-4911232 | None:intergenic | 45.0% | |
| CAGCAGGAAAACCAACTGAT+GGG | - | chr8.3:4911476-4911495 | None:intergenic | 45.0% | |
| CAGTTTGCCATCCTCTACAA+TGG | + | chr8.3:4911199-4911218 | MS.gene26736:CDS | 45.0% | |
| CATGCTTCCATTGTAGAGGA+TGG | - | chr8.3:4911209-4911228 | None:intergenic | 45.0% | |
| CCAATCAAGATCAGATGGTC+TGG | - | chr8.3:4910964-4910983 | None:intergenic | 45.0% | |
| CCAGACCATCTGATCTTGAT+TGG | + | chr8.3:4910961-4910980 | MS.gene26736:intron | 45.0% | |
| CCTCAAGTGGCATCATTACT+GGG | - | chr8.3:4912107-4912126 | None:intergenic | 45.0% | |
| CTGAGAAGAGTTCCATTTGC+AGG | + | chr8.3:4911496-4911515 | MS.gene26736:CDS | 45.0% | |
| CTTATCGTGATCAGACAGTC+CGG | - | chr8.3:4910877-4910896 | None:intergenic | 45.0% | |
| GAGTTTCCTTGTGGAGAAGA+AGG | - | chr8.3:4911435-4911454 | None:intergenic | 45.0% | |
| GATGTTGACAATGGCCTGAA+GGG | - | chr8.3:4911148-4911167 | None:intergenic | 45.0% | |
| GTGCTTAAAGTAGGAGGTCT+AGG | - | chr8.3:4910755-4910774 | None:intergenic | 45.0% | |
| GTTTCCTTGTGGAGAAGAAG+GGG | - | chr8.3:4911433-4911452 | None:intergenic | 45.0% | |
| TAGACACAGTCAACCACATC+CGG | + | chr8.3:4910855-4910874 | MS.gene26736:intron | 45.0% | |
| TGGCAAACTGAGTTGTACCA+GGG | - | chr8.3:4911189-4911208 | None:intergenic | 45.0% | |
| TTCAGGCCATTGTCAACATC+TGG | + | chr8.3:4911148-4911167 | MS.gene26736:intron | 45.0% | |
| ! | CCAGTAATGATGCCACTTGA+GGG | + | chr8.3:4912105-4912124 | MS.gene26736:CDS | 45.0% |
| ! | GCAGTCACAAGGTTTGTTTG+TGG | + | chr8.3:4911006-4911025 | MS.gene26736:intron | 45.0% |
| ! | GTGCTTTAAGTAGGAGGTCT+AGG | - | chr8.3:4910632-4910651 | None:intergenic | 45.0% |
| ! | TAGGAGGTCTAGGATTCGAA+TGG | - | chr8.3:4910745-4910764 | None:intergenic | 45.0% |
| ! | TTTTTGCCTCTTTCCCCTTC+AGG | + | chr8.3:4911131-4911150 | MS.gene26736:intron | 45.0% |
| !! | CCGAAAGTGCTTTAAGTAGG+AGG | - | chr8.3:4910638-4910657 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAGT+AGG | - | chr8.3:4910549-4910568 | None:intergenic | 5.0% |
| AAACCAACTGATGGGGGAGA+AGG | - | chr8.3:4911468-4911487 | None:intergenic | 50.0% | |
| AGTGACTGTCTGCGTGCTAA+TGG | - | chr8.3:4911879-4911898 | None:intergenic | 50.0% | |
| ATCACCCCTTCTTCTCCACA+AGG | + | chr8.3:4911426-4911445 | MS.gene26736:CDS | 50.0% | |
| ATGGAACTCTTCTCAGCAGC+AGG | - | chr8.3:4911492-4911511 | None:intergenic | 50.0% | |
| CACGCAGACAGTCACTTCAA+AGG | + | chr8.3:4911883-4911902 | MS.gene26736:CDS | 50.0% | |
| CCCTCAAGTGGCATCATTAC+TGG | - | chr8.3:4912108-4912127 | None:intergenic | 50.0% | |
| GCAGCAGGAAAACCAACTGA+TGG | - | chr8.3:4911477-4911496 | None:intergenic | 50.0% | |
| GCAGGAAAACCAACTGATGG+GGG | - | chr8.3:4911474-4911493 | None:intergenic | 50.0% | |
| GCATCATTACTGGGCTGAAG+TGG | - | chr8.3:4912098-4912117 | None:intergenic | 50.0% | |
| GGACTAAATGCAATGACCCC+TGG | + | chr8.3:4911169-4911188 | MS.gene26736:CDS | 50.0% | |
| GGCAAACTGAGTTGTACCAG+GGG | - | chr8.3:4911188-4911207 | None:intergenic | 50.0% | |
| TCTGCTAGCAACAGCTGTCT+TGG | - | chr8.3:4910314-4910333 | None:intergenic | 50.0% | |
| TGGAGAAGAAGGGGTGATAC+TGG | - | chr8.3:4911424-4911443 | None:intergenic | 50.0% | |
| ! | CCCAGTAATGATGCCACTTG+AGG | + | chr8.3:4912104-4912123 | MS.gene26736:CDS | 50.0% |
| CAATGGCCTGAAGGGGAAAG+AGG | - | chr8.3:4911140-4911159 | None:intergenic | 55.0% | |
| GTGATCAGACAGTCCGGATG+TGG | - | chr8.3:4910871-4910890 | None:intergenic | 55.0% | |
| GTGGTTGACACGCAGTCACA+AGG | + | chr8.3:4910995-4911014 | MS.gene26736:intron | 55.0% | |
| TTGCCTTCTCCCCCATCAGT+TGG | + | chr8.3:4911462-4911481 | MS.gene26736:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 4909767 | 4912134 | 4909767 | ID=MS.gene26736 |
| chr8.3 | mRNA | 4909767 | 4912134 | 4909767 | ID=MS.gene26736.t1;Parent=MS.gene26736 |
| chr8.3 | exon | 4909767 | 4909852 | 4909767 | ID=MS.gene26736.t1.exon1;Parent=MS.gene26736.t1 |
| chr8.3 | CDS | 4909767 | 4909852 | 4909767 | ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1 |
| chr8.3 | exon | 4911153 | 4911258 | 4911153 | ID=MS.gene26736.t1.exon2;Parent=MS.gene26736.t1 |
| chr8.3 | CDS | 4911153 | 4911258 | 4911153 | ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1 |
| chr8.3 | exon | 4911339 | 4911525 | 4911339 | ID=MS.gene26736.t1.exon3;Parent=MS.gene26736.t1 |
| chr8.3 | CDS | 4911339 | 4911525 | 4911339 | ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1 |
| chr8.3 | exon | 4911871 | 4911928 | 4911871 | ID=MS.gene26736.t1.exon4;Parent=MS.gene26736.t1 |
| chr8.3 | CDS | 4911871 | 4911928 | 4911871 | ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1 |
| chr8.3 | exon | 4912035 | 4912134 | 4912035 | ID=MS.gene26736.t1.exon5;Parent=MS.gene26736.t1 |
| chr8.3 | CDS | 4912035 | 4912134 | 4912035 | ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1 |
| Gene Sequence |
| Protein sequence |
