AlfalfaGEDB | MS.gene26736

M. sativa cultivar XinJiangDaYe / MS.gene26736

KEGG: K13464
GO: -
PFAM: PF06200.17 PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26736.t1	XP_003609915.1	96.1	178	7	0	1	178	1	178	2.40E-86	328.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26736.t1	Q9C5K8	41.0	117	63	4	45	159	57	169	1.7e-11	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26736.t1	G7JR45	96.1	178	7	0	1	178	1	178	1.7e-86	328.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene26736.t1	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene057422	MS.gene26736	PPI
MS.gene26736	MS.gene64493	PPI
MS.gene26736	MS.gene26683	PPI
MS.gene26736	MS.gene037141	PPI
MS.gene26736	MS.gene012194	PPI
MS.gene26736	MS.gene051780	PPI
MS.gene26736	MS.gene24789	PPI
MS.gene26736	MS.gene025273	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26736.t1	MTR_4g124360	96.067	178	7	0	1	178	1	178	4.33e-125	349
MS.gene26736.t1	MTR_4g124360	95.714	140	6	0	39	178	1	140	5.21e-89	256
MS.gene26736.t1	MTR_2g044910	55.782	147	60	3	25	168	38	182	1.69e-46	151
MS.gene26736.t1	MTR_2g044910	56.028	141	57	3	31	168	1	139	1.69e-45	147
MS.gene26736.t1	MTR_2g044910	46.457	127	62	3	25	147	38	162	2.25e-26	99.0
MS.gene26736.t1	MTR_5g013515	34.848	132	69	2	41	168	10	128	6.59e-17	73.6
MS.gene26736.t1	MTR_5g013520	30.328	122	70	2	41	162	11	117	2.73e-13	64.3
MS.gene26736.t1	MTR_5g013530	30.081	123	71	2	41	163	18	125	4.07e-12	61.2
MS.gene26736.t1	MTR_5g013530	30.081	123	71	2	41	163	40	147	5.27e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26736.t1	AT5G20900	41.732	127	54	6	45	162	57	172	3.13e-18	78.2
MS.gene26736.t1	AT3G43440	36.667	120	58	3	44	163	130	231	1.45e-16	75.1
MS.gene26736.t1	AT3G43440	34.426	122	62	3	42	163	42	145	4.90e-16	71.6
MS.gene26736.t1	AT1G19180	35.135	111	64	1	43	153	58	160	1.04e-12	63.5
MS.gene26736.t1	AT1G19180	35.135	111	64	1	43	153	124	226	3.80e-12	63.2
MS.gene26736.t1	AT1G19180	35.135	111	64	1	43	153	124	226	3.80e-12	63.2

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Find 43 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTCAGAGTTTCCTTG+TGG	0.648404	8.3:-4911441	None:intergenic
AACACCTTGCATCCTGCAAA+TGG	0.468674	8.3:-4911508	None:intergenic
AAGTCATCTGAAATGAAAAG+TGG	0.529700	8.3:+4911375	MS.gene26736:CDS
ACTGGAAAAGAGTGAATTGA+AGG	0.475980	8.3:-4911403	None:intergenic
AGCAGGAAAACCAACTGATG+GGG	0.615564	8.3:-4911472	None:intergenic
AGCATTTCTCTGCTGCTAAC+TGG	0.409603	8.3:+4909831	MS.gene26736:CDS
AGTGACTGTCTGCGTGCTAA+TGG	0.374634	8.3:-4911876	None:intergenic
AGTTCCATTTGCAGGATGCA+AGG	0.556537	8.3:+4911504	MS.gene26736:CDS
AGTTTCCTTGTGGAGAAGAA+GGG	0.523527	8.3:-4911431	None:intergenic
ATCACCCCTTCTTCTCCACA+AGG	0.677373	8.3:+4911426	MS.gene26736:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAACATAGGGCTG+TGG	-	chr8.3:4910020-4910039	None:intergenic	30.0%
AATAACTATAGATACTTCGG+TGG	+	chr8.3:4910393-4910412	MS.gene26736:intron	30.0%
ACTAAACATAATCCCAAAGA+TGG	-	chr8.3:4910239-4910258	None:intergenic	30.0%
AGAGAATTCACAACCAAAAT+TGG	+	chr8.3:4911624-4911643	MS.gene26736:intron	30.0%
ATTATCCAATCAAGATCAGA+TGG	-	chr8.3:4910969-4910988	None:intergenic	30.0%
GAATGATCTTGAAATTGAAC+AGG	+	chr8.3:4910154-4910173	MS.gene26736:intron	30.0%
TACTACTACTACTACTATAG+AGG	+	chr8.3:4911547-4911566	MS.gene26736:intron	30.0%
TGTTTAGTATGAACTTGAGA+TGG	+	chr8.3:4910251-4910270	MS.gene26736:intron	30.0%
AAAGTAAACTAGTGAAGTGC+TGG	-	chr8.3:4911291-4911310	None:intergenic	35.0%
AAATTGTCAGAGTTTCCTTG+TGG	-	chr8.3:4911444-4911463	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	4909767	4912134	4909767	ID=MS.gene26736
chr8.3	mRNA	4909767	4912134	4909767	ID=MS.gene26736.t1;Parent=MS.gene26736
chr8.3	exon	4909767	4909852	4909767	ID=MS.gene26736.t1.exon1;Parent=MS.gene26736.t1
chr8.3	CDS	4909767	4909852	4909767	ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1
chr8.3	exon	4911153	4911258	4911153	ID=MS.gene26736.t1.exon2;Parent=MS.gene26736.t1
chr8.3	CDS	4911153	4911258	4911153	ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1
chr8.3	exon	4911339	4911525	4911339	ID=MS.gene26736.t1.exon3;Parent=MS.gene26736.t1
chr8.3	CDS	4911339	4911525	4911339	ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1
chr8.3	exon	4911871	4911928	4911871	ID=MS.gene26736.t1.exon4;Parent=MS.gene26736.t1
chr8.3	CDS	4911871	4911928	4911871	ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1
chr8.3	exon	4912035	4912134	4912035	ID=MS.gene26736.t1.exon5;Parent=MS.gene26736.t1
chr8.3	CDS	4912035	4912134	4912035	ID=cds.MS.gene26736.t1;Parent=MS.gene26736.t1

Gene Sequence

>MS.gene26736

ATGACTACTTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGTGATCAAGAGTCAGTGAAGCATTTCTCTGCTGCTAACTGGTAATTCTCTCATAACTCATATCAATATATGTATTTTTGGTTTTAATCCTATACTTAGAGTTCGGCTCAAAGTTAAGTAAAATATGACGAGAATTATTTCGGTTAGGATTCGAAATATATATGTGTCTTGCTAAATATTTCTATTTATACTATATTCTTGACATCCACAGCCCTATGTTTTTTTTTTGTCCTTTCCATATTTGATTGTGTTTTTTGTCCATTATTATCATGAATACCTACCTCAAAAGGGGTTTTTATTAAGCATAGGAATCATAGATTATGTATTAGAAAAAATTGAAAGGAATGATCTTGAAATTGAACAGGTAAGCACAACAAGTTTCTTGGCTATGAGAATGTTTTAGTTTGATGTTTGAACTTTGAAACCATCTTTGGGATTATGTTTAGTATGAACTTGAGATGGCAATTAGTTTAATTTACATACTAAATCAGATCTGAGACCAAGACAGCTGTTGCTAGCAGATATGAATCATAAATATTCTCCAACTAAACATAATAATTATAATCTTGATTTAGTGAAAAAATAACTATAGATACTTCGGTGGTCTACTAGAAAGATAACAAGCAATTTGTATTCAATTTCAATTCTTGTTATAGGATTGTTGGTTGGGTTTGACTCAAATAATTTAGATCTTGATATTTATTTTGGCCTCTCAACCAACATGACAACAAGAACCTACTTTTTTTTTTTTTTTTTTATATAGGCAAAATGAAAACATTAGTAAGTTAGTGATTATGTTAGTTTTTAGGGTTTAAATCCTAGACCTCCTACTTAAAGCACTTTCGGTTTCCCTTAACTCATTTTGAGTTTAAGAATCCACTTTTTTTATAGGCAAAATATTAGTAAGTTGGTGATTATGTTAGTTTCTAGCCATTCGAATCCTAGACCTCCTACTTTAAGCACTTTTGATTTCTCTTAACTCAACCATTCGAACTACATACTTCAGACTCAAACTAATTGATCTTGATTGTGTGTTGTGTGACTAGACACAGTCAACCACATCCGGACTGTCTGATCACGATAAGATAATCCATATTTCAATGCAAATTTTGATTTCTTTATTTTAATCTAAAGTGACAAGTTTAAAATCCAGACCATCTGATCTTGATTGGATAATCTAGACGTGGTTGACACGCAGTCACAAGGTTTGTTTGTGGCTGCAGACAAACCAAATCCCACAAAAACAAACTTAAACTTAGATGTAGAGATTTCACCAAACAATATATACATTTCTCAGCAATAAAGACTTCATAATGCTTTTTTTGCCTCTTTCCCCTTCAGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTAAACACTACTTGTTGAAAGATGATATTCCAGCACTTCACTAGTTTACTTTATTAATTCTTTGCTTGTTAACAATTTAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCATCTGAAATGAAAAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTATCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGGTGTTATCTCTTTCATTATATTACTACTACTACTACTATAGAGGAGTGTTAGTAACACACTCTTTAAAAACTCTTTTCGAACACTTACTACTACAAGCAGAGAATTCACAACCAAAATTGGAAACCGAAAAATGAACTTTCTCACTAATTTGATCTTTTTAGACGGAATTATAGAGACGCATTTCATATTTTCTTTTTAAATTTTTGTTGCTAAGTCAATTCGTTTAAAATCAATTTTTGTCGGTGCGGAACCAAAGATACACTTCTTCATCAAAGTACTATATATTCATCAATATGATACTAATTTAAATCTTCTATGGCTTTCGGTTGATATTTTGTCTTCAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGTAGTACTACCTAGCAACATGTCATGTTTAGAATTTCCATTGTTGTAATTGATTGTTATATTCTGATTTTTTTGATTGATTCCATTTTTTTGTATGTTTAATAAAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACAACATTGATAACCACTTCAGCCCAGTAATGATGCCACTTGAGGGCAAATAG

Protein sequence

>MS.gene26736.t1

MTTSNSINNVDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSITPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANNIDNHFSPVMMPLEGK