AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062084.t1 MTR_2g044910 93.780 209 11 1 1 209 1 207 6.00e-141 392
MS.gene062084.t1 MTR_2g044910 93.976 166 8 1 44 209 1 164 1.17e-110 313
MS.gene062084.t1 MTR_2g044910 85.897 156 15 3 1 154 1 151 1.07e-87 256
MS.gene062084.t1 MTR_4g124360 59.701 134 46 3 38 168 25 153 4.60e-45 148
MS.gene062084.t1 MTR_4g124360 59.559 136 46 4 52 184 1 130 4.77e-41 136
MS.gene062084.t1 MTR_5g013515 36.066 122 63 3 57 176 13 121 7.57e-16 71.6
MS.gene062084.t1 MTR_2g042900 32.031 128 64 3 58 168 112 233 9.86e-14 68.2
MS.gene062084.t1 MTR_4g124960 31.967 122 46 3 49 168 90 176 2.04e-12 63.9
MS.gene062084.t1 MTR_5g013530 33.333 114 59 3 58 171 22 118 2.61e-12 62.4
MS.gene062084.t1 MTR_5g013530 33.333 114 59 3 58 171 44 140 9.23e-12 61.6
MS.gene062084.t1 MTR_4g124960 31.667 120 45 3 49 166 90 174 1.36e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062084.t1 AT5G20900 52.586 116 47 4 58 171 57 166 6.89e-30 109
MS.gene062084.t1 AT3G43440 38.760 129 53 4 57 183 130 234 1.47e-15 73.2
MS.gene062084.t1 AT3G43440 36.923 130 56 4 56 183 43 148 2.84e-15 70.5
MS.gene062084.t1 AT1G74950 37.097 124 49 4 59 168 120 228 8.01e-13 65.9
MS.gene062084.t1 AT1G19180 35.043 117 62 3 54 168 56 160 4.28e-12 62.8
MS.gene062084.t1 AT1G19180 34.746 118 61 4 54 168 122 226 7.52e-12 63.2
MS.gene062084.t1 AT1G19180 34.746 118 61 4 54 168 122 226 7.52e-12 63.2

Find 47 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGACCCCTCAACCATTT+TGG 0.144123 2.3:+45330437 None:intergenic
CAGCTTACCATCTTCTATAA+TGG 0.263317 2.3:-45327580 MS.gene062084:CDS
TTCCTTCACCTGTTCCTTCA+AGG 0.303820 2.3:-45327340 MS.gene062084:CDS
TCCTTCATTGAAACCGAATC+TGG 0.348326 2.3:+45326876 None:intergenic
TTTAGGTCAATGCCAGCATC+TGG 0.377821 2.3:-45327631 MS.gene062084:intron
TGCTGACAATTCGCCAGATT+CGG 0.379407 2.3:-45326889 MS.gene062084:CDS
TCTTCTCCTATTGCTGTTGA+TGG 0.379691 2.3:-45330468 MS.gene062084:CDS
AGTGAATGTCTGCGTGCTAT+TGG 0.383673 2.3:+45327104 None:intergenic
TGAGTTGTATTAGCAATCAT+TGG 0.398568 2.3:+45327601 None:intergenic
AGCTTACCATCTTCTATAAT+GGG 0.398580 2.3:-45327579 MS.gene062084:CDS
CTGCAGATAGAACTCTTTGC+AGG 0.418330 2.3:+45327260 None:intergenic
GCCAGATTCGGTTTCAATGA+AGG 0.420770 2.3:-45326877 MS.gene062084:CDS
TGATGGTGCTAGCTCCAAAA+TGG 0.421890 2.3:-45330451 MS.gene062084:CDS
ACAGGTGAAGGAACGGGAAT+GGG 0.422899 2.3:+45327350 None:intergenic
CTAGCACCATCAACAGCAAT+AGG 0.441302 2.3:+45330462 None:intergenic
AATGGATGGTGTTACTGTTA+AGG 0.443386 2.3:-45330520 MS.gene062084:CDS
GTTGGCTGAAATTCTTCCAT+TGG 0.460471 2.3:+45326852 None:intergenic
CTTCTTCGTTTCACTAGACT+TGG 0.471119 2.3:+45327388 None:intergenic
TGATGGAATTCCTGCAGAAA+AGG 0.477638 2.3:-45327542 MS.gene062084:intron
GGGAGTATTTGTATCTATGA+TGG 0.478209 2.3:-45327559 MS.gene062084:CDS
ATTGGATTCATTCCAGATGC+TGG 0.483782 2.3:+45327619 None:intergenic
GCAGTTCCATGTGGCGAAGA+AGG 0.484372 2.3:+45327317 None:intergenic
CTGCAAAGAGTTCTATCTGC+AGG 0.484476 2.3:-45327259 MS.gene062084:CDS
TCTAGAACAGTAAACTTCTC+TGG 0.487430 2.3:+45330492 None:intergenic
TGTGGCGAAGAAGGCCTTGA+AGG 0.491077 2.3:+45327326 None:intergenic
ATAGAACTCTTTGCAGGAAA+GGG 0.495560 2.3:+45327266 None:intergenic
AACAGGTGAAGGAACGGGAA+TGG 0.503659 2.3:+45327349 None:intergenic
TGCTAGCTCCAAAATGGTTG+AGG 0.504622 2.3:-45330445 MS.gene062084:CDS
AATACTCCCATTATAGAAGA+TGG 0.513403 2.3:+45327573 None:intergenic
TTCTTCAGAAGCGTCGAGAC+AGG 0.516859 2.3:-45327073 MS.gene062084:intron
GAAGGAACAGGTGAAGGAAC+GGG 0.518842 2.3:+45327344 None:intergenic
GCTAGCTCCAAAATGGTTGA+GGG 0.522798 2.3:-45330444 MS.gene062084:CDS
GAAGAAGGCCTTGAAGGAAC+AGG 0.524051 2.3:+45327332 None:intergenic
GCTCAAGATGCAGATATAGT+TGG 0.526009 2.3:+45326834 None:intergenic
TCAAGGCCTTCTTCGCCACA+TGG 0.540794 2.3:-45327323 MS.gene062084:CDS
AGTTCTATCTGCAGGCTGCA+AGG 0.555717 2.3:-45327251 MS.gene062084:intron
GATAGAACTCTTTGCAGGAA+AGG 0.557564 2.3:+45327265 None:intergenic
TGATAATATCGCTTCACCGC+AGG 0.560796 2.3:-45327294 MS.gene062084:CDS
GGCCTTGAAGGAACAGGTGA+AGG 0.574210 2.3:+45327338 None:intergenic
TGAAGGAACAGGTGAAGGAA+CGG 0.580717 2.3:+45327343 None:intergenic
GGTTTCAATGAAGGAACCAA+TGG 0.581761 2.3:-45326868 MS.gene062084:CDS
AACAAAGGTAGCTGACAACA+TGG 0.591184 2.3:-45326925 MS.gene062084:CDS
GCAGGAAAGGGAGGTGCCTG+CGG 0.600459 2.3:+45327278 None:intergenic
GACAACATGGAGAACAACTT+CGG 0.616517 2.3:-45326912 MS.gene062084:CDS
GAACTCTTTGCAGGAAAGGG+AGG 0.634573 2.3:+45327269 None:intergenic
CTAGCTCCAAAATGGTTGAG+GGG 0.663495 2.3:-45330443 MS.gene062084:CDS
ATATTATCAGCAGTTCCATG+TGG 0.739266 2.3:+45327308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTGAGA+AGG - chr2.3:45327856-45327875 MS.gene062084:intron 10.0%
!! AAAAATTGGAAACAAAAAAA+AGG + chr2.3:45327061-45327080 None:intergenic 15.0%
!! AAAATTGGAAACAAAAAAAA+GGG + chr2.3:45327060-45327079 None:intergenic 15.0%
!! AGTAATTATTCATCAAAAAT+TGG + chr2.3:45327075-45327094 None:intergenic 15.0%
!! ATCTTAGTTATTTAAAAAGT+TGG + chr2.3:45328810-45328829 None:intergenic 15.0%
!! TAATTCATTGCATAATATAA+CGG - chr2.3:45327603-45327622 MS.gene062084:CDS 15.0%
!! TTATATTATGCAATGAATTA+GGG + chr2.3:45327603-45327622 None:intergenic 15.0%
!!! ATTTTAACTCAAATAACTAA+AGG + chr2.3:45327247-45327266 None:intergenic 15.0%
!! ATAATTTATGTTTGTACTAC+AGG - chr2.3:45330372-45330391 MS.gene062084:intron 20.0%
!! ATACAAATTGATACCATTTA+AGG + chr2.3:45327199-45327218 None:intergenic 20.0%
!! ATATGAAAATCGAAAAGATT+AGG + chr2.3:45328327-45328346 None:intergenic 20.0%
!! GTTATATTATGCAATGAATT+AGG + chr2.3:45327604-45327623 None:intergenic 20.0%
!! TGTTGAAAGAATTTCATTAA+AGG + chr2.3:45327430-45327449 None:intergenic 20.0%
!! TTCCTTTATATTCAATTTGA+CGG + chr2.3:45328864-45328883 None:intergenic 20.0%
!!! CTACGAAAAAATGAAATTTT+CGG - chr2.3:45327330-45327349 MS.gene062084:CDS 20.0%
!!! CTGGATATTTTGTTTTTTTT+TGG - chr2.3:45328706-45328725 MS.gene062084:intron 20.0%
!!! CTTTAACACAAAAACTTTTA+AGG - chr2.3:45329117-45329136 MS.gene062084:intron 20.0%
!!! TAATCAAAAACATGCTTTTT+TGG + chr2.3:45326984-45327003 None:intergenic 20.0%
!!! TAGCTTGGTTATTTTAATTT+TGG - chr2.3:45327098-45327117 MS.gene062084:CDS 20.0%
!!! TTACTGTATTATTCTCTTTT+AGG - chr2.3:45329707-45329726 MS.gene062084:intron 20.0%
!!! TTGTTCATCTAATGTTTTTA+TGG + chr2.3:45327144-45327163 None:intergenic 20.0%
! AAAGCAATAAAATTCAAGAG+AGG - chr2.3:45327885-45327904 MS.gene062084:intron 25.0%
! AAATAACTAAGATCATTGCT+TGG - chr2.3:45328817-45328836 MS.gene062084:intron 25.0%
! AAGAACTCAACGATTAATTA+TGG + chr2.3:45327677-45327696 None:intergenic 25.0%
! AAGCAATAAAATTCAAGAGA+GGG - chr2.3:45327886-45327905 MS.gene062084:intron 25.0%
! AATAGAATAAGTCATTAGAG+TGG + chr2.3:45329207-45329226 None:intergenic 25.0%
! AGTAGATCAAAGAAAACTTT+AGG + chr2.3:45327394-45327413 None:intergenic 25.0%
! ATTAGATGAACAATGAACTA+AGG - chr2.3:45327151-45327170 MS.gene062084:intron 25.0%
! TAAAATAAAGGTTTGTGATG+CGG + chr2.3:45329351-45329370 None:intergenic 25.0%
! TAATTTCTCTTATGACAGAA+AGG + chr2.3:45328482-45328501 None:intergenic 25.0%
! TAGTAGTTAAGAGTTGTTAA+GGG - chr2.3:45327798-45327817 MS.gene062084:intron 25.0%
! TAGTTGAAGACATAGTTAAT+AGG + chr2.3:45330140-45330159 None:intergenic 25.0%
! TGGATTACTAACAATATCAT+TGG - chr2.3:45328377-45328396 MS.gene062084:intron 25.0%
! TGGCATAAAATACTTCAATT+CGG + chr2.3:45329533-45329552 None:intergenic 25.0%
! TTAGTAGTTAAGAGTTGTTA+AGG - chr2.3:45327797-45327816 MS.gene062084:intron 25.0%
! TTCCGTCAAATTGAATATAA+AGG - chr2.3:45328859-45328878 MS.gene062084:intron 25.0%
! TTGTTAAGGGATAGAATAAA+GGG - chr2.3:45327811-45327830 MS.gene062084:intron 25.0%
!! AACTATACTTGTTACTTCTT+TGG - chr2.3:45327724-45327743 MS.gene062084:intron 25.0%
!! ACAACTAAGGTTCAAATTTT+TGG - chr2.3:45328074-45328093 MS.gene062084:intron 25.0%
!! ACCATTTAAGGTACAAAAAT+TGG + chr2.3:45327187-45327206 None:intergenic 25.0%
!! CATACACAAAATTTGAAACA+TGG + chr2.3:45330321-45330340 None:intergenic 25.0%
!! CTTGTGTAATTTCTGTTTTA+TGG + chr2.3:45327929-45327948 None:intergenic 25.0%
!! TCCAATTTTTGTACCTTAAA+TGG - chr2.3:45327183-45327202 MS.gene062084:intron 25.0%
!! TGCTTTTGTATTTGTTTGAA+TGG - chr2.3:45329591-45329610 MS.gene062084:intron 25.0%
!! TGGCTATGAGTTTAAAATAA+AGG + chr2.3:45329363-45329382 None:intergenic 25.0%
!! TTTCTTTTCAATTCAACTCT+TGG - chr2.3:45328357-45328376 MS.gene062084:intron 25.0%
!!! AGATATGTCATTGTTTTTCA+TGG - chr2.3:45329060-45329079 MS.gene062084:intron 25.0%
!!! TTGTTTTTTTTTGGCTTTTC+TGG - chr2.3:45328715-45328734 MS.gene062084:intron 25.0%
AAAAAGTTGGCGAAATGAAA+AGG + chr2.3:45328797-45328816 None:intergenic 30.0%
AACAAAAAAAAGGGTCTTGA+AGG + chr2.3:45327051-45327070 None:intergenic 30.0%
AACAATCCACCATATAAACA+TGG + chr2.3:45328647-45328666 None:intergenic 30.0%
AATACTCCCATTATAGAAGA+TGG + chr2.3:45329785-45329804 None:intergenic 30.0%
AATTTGAACCTTAGTTGTCT+AGG + chr2.3:45328072-45328091 None:intergenic 30.0%
ACACAAAAACTGTTATGTCA+CGG - chr2.3:45329325-45329344 MS.gene062084:intron 30.0%
ACAGCAAAGTAAAATTATGC+TGG + chr2.3:45329086-45329105 None:intergenic 30.0%
ACTAGATATTGTTGCATTCT+AGG + chr2.3:45329405-45329424 None:intergenic 30.0%
AGCTTACCATCTTCTATAAT+GGG - chr2.3:45329776-45329795 MS.gene062084:intron 30.0%
ATTAGACTCTATTTACCAAC+AGG - chr2.3:45329911-45329930 MS.gene062084:intron 30.0%
ATTGCTTGGCAAATATGATA+GGG - chr2.3:45328831-45328850 MS.gene062084:intron 30.0%
ATTTGAACCTTAGTTGTCTA+GGG + chr2.3:45328071-45328090 None:intergenic 30.0%
CAATGATTTCATACAGAACA+GGG + chr2.3:45329024-45329043 None:intergenic 30.0%
CACACGAGACATATAAATTA+TGG + chr2.3:45330202-45330221 None:intergenic 30.0%
CATAATTTATATGTCTCGTG+TGG - chr2.3:45330200-45330219 MS.gene062084:intron 30.0%
CGGTTAAATTGTTTATCCTA+TGG - chr2.3:45327350-45327369 MS.gene062084:CDS 30.0%
CTCAAATAACTAAAGGTTAC+AGG + chr2.3:45327240-45327259 None:intergenic 30.0%
GCTAATAGTACAATCACAAT+TGG + chr2.3:45327984-45328003 None:intergenic 30.0%
GTAAGTCTTAACACTCATAA+TGG + chr2.3:45329383-45329402 None:intergenic 30.0%
GTTGTTAAGGGATAGAATAA+AGG - chr2.3:45327810-45327829 MS.gene062084:intron 30.0%
TATCTGTAGATTGCAGATTA+TGG + chr2.3:45328679-45328698 None:intergenic 30.0%
TGAATAATTACTCACTAGCT+TGG - chr2.3:45327083-45327102 MS.gene062084:CDS 30.0%
TGAGTTGTATTAGCAATCAT+TGG + chr2.3:45329757-45329776 None:intergenic 30.0%
TGGTCTATGTCAGATATAAT+AGG + chr2.3:45328619-45328638 None:intergenic 30.0%
TTATGTTTGTACTACAGGTT+GGG - chr2.3:45330377-45330396 MS.gene062084:intron 30.0%
TTTATGTTTGTACTACAGGT+TGG - chr2.3:45330376-45330395 MS.gene062084:intron 30.0%
! AAATTGTTCTGATGAGTTGA+TGG - chr2.3:45327263-45327282 MS.gene062084:CDS 30.0%
! ACAAAAGCATAGGAAATCAT+TGG - chr2.3:45328945-45328964 MS.gene062084:intron 30.0%
! ATTAGGAGTCTTTTCTTCAA+GGG + chr2.3:45328310-45328329 None:intergenic 30.0%
! CAAAAGCATAGGAAATCATT+GGG - chr2.3:45328946-45328965 MS.gene062084:intron 30.0%
! GTAGATTTATTTGATAGCAG+AGG + chr2.3:45328978-45328997 None:intergenic 30.0%
! TATACTTGTTACTTCTTTGG+TGG - chr2.3:45327727-45327746 MS.gene062084:intron 30.0%
! TCTGTTTTATGGCTGTATAA+GGG + chr2.3:45327918-45327937 None:intergenic 30.0%
! TGATTGAACAACAAAAGCAT+AGG - chr2.3:45328935-45328954 MS.gene062084:intron 30.0%
! TTCTGTTTTATGGCTGTATA+AGG + chr2.3:45327919-45327938 None:intergenic 30.0%
! TTTTTCTGAATTCTGAACCT+TGG - chr2.3:45328763-45328782 MS.gene062084:intron 30.0%
!! ATGAAAAGGTATTAAGTCCA+AGG + chr2.3:45328783-45328802 None:intergenic 30.0%
!! ATGTTTATATGGTGGATTGT+TGG - chr2.3:45328646-45328665 MS.gene062084:intron 30.0%
!! CTTTGATCTACTTTTCTTAC+TGG - chr2.3:45327402-45327421 MS.gene062084:CDS 30.0%
!! TGTCTTCATCGATTTAGAAA+AGG + chr2.3:45328403-45328422 None:intergenic 30.0%
!!! CATTTTTTCGTAGAGTCAAA+TGG + chr2.3:45327323-45327342 None:intergenic 30.0%
AAATGTGATTAACCAGCGAA+TGG + chr2.3:45329451-45329470 None:intergenic 35.0%
AATCTACAGATAGATAACGC+TGG - chr2.3:45328687-45328706 MS.gene062084:intron 35.0%
ACATATGTTTCAGCGAGATT+GGG - chr2.3:45329227-45329246 MS.gene062084:intron 35.0%
ACATCACCATGTTTATATGG+TGG - chr2.3:45328638-45328657 MS.gene062084:intron 35.0%
ACCACATCACCATGTTTATA+TGG - chr2.3:45328635-45328654 MS.gene062084:intron 35.0%
AGAGTAGTTAGTTAGCTGTT+TGG - chr2.3:45328199-45328218 MS.gene062084:intron 35.0%
AGCATAGATAAGCCTGATAT+TGG + chr2.3:45329575-45329594 None:intergenic 35.0%
AGTCATGACTCTATTGTGAA+AGG - chr2.3:45328280-45328299 MS.gene062084:intron 35.0%
AGTTAGTTAGCTGTTTGGTT+AGG - chr2.3:45328204-45328223 MS.gene062084:intron 35.0%
ATAGAACTCTTTGCAGGAAA+GGG + chr2.3:45330092-45330111 None:intergenic 35.0%
ATAGATAAGCCTGATATTGG+TGG + chr2.3:45329572-45329591 None:intergenic 35.0%
ATATTATCAGCAGTTCCATG+TGG + chr2.3:45330050-45330069 None:intergenic 35.0%
ATTGAACCATGTATCCTTCA+CGG - chr2.3:45328452-45328471 MS.gene062084:intron 35.0%
CAACGATTAATTATGGAGCT+CGG + chr2.3:45327670-45327689 None:intergenic 35.0%
CAGCTTACCATCTTCTATAA+TGG - chr2.3:45329775-45329794 MS.gene062084:intron 35.0%
CATTGCTTGGCAAATATGAT+AGG - chr2.3:45328830-45328849 MS.gene062084:intron 35.0%
CCAATGATTTCATACAGAAC+AGG + chr2.3:45329025-45329044 None:intergenic 35.0%
CCTGTTCTGTATGAAATCAT+TGG - chr2.3:45329022-45329041 MS.gene062084:intron 35.0%
CTTAACTACTCTTAACTCAG+AGG + chr2.3:45328165-45328184 None:intergenic 35.0%
GAAAAGACGCAAAACAATAC+AGG + chr2.3:45328432-45328451 None:intergenic 35.0%
GCTCATAGTCATTGATAAGT+GGG - chr2.3:45327520-45327539 MS.gene062084:intron 35.0%
GTCATGACTCTATTGTGAAA+GGG - chr2.3:45328281-45328300 MS.gene062084:intron 35.0%
GTGTGTAACCAAATTGAACT+GGG - chr2.3:45329160-45329179 MS.gene062084:intron 35.0%
GTTCAATTTGGTTACACACA+TGG + chr2.3:45329159-45329178 None:intergenic 35.0%
TACATATGTTTCAGCGAGAT+TGG - chr2.3:45329226-45329245 MS.gene062084:intron 35.0%
TCAGCAGGTAAAAGAAGAAT+AGG + chr2.3:45328016-45328035 None:intergenic 35.0%
TCCTTAGCTACTTGAATTCA+AGG - chr2.3:45329425-45329444 MS.gene062084:intron 35.0%
TGTGTGTAACCAAATTGAAC+TGG - chr2.3:45329159-45329178 MS.gene062084:intron 35.0%
TTAACTCAGAGGCAGAAAAA+GGG + chr2.3:45328154-45328173 None:intergenic 35.0%
TTAGGAGAAACCACTAAACA+AGG + chr2.3:45327376-45327395 None:intergenic 35.0%
! ACCATATAAACATGGTGATG+TGG + chr2.3:45328639-45328658 None:intergenic 35.0%
! ACTTTTGTCCCAGTTCAATT+TGG + chr2.3:45329171-45329190 None:intergenic 35.0%
! CACAAAATTTGAAACATGGC+AGG + chr2.3:45330317-45330336 None:intergenic 35.0%
! GATTAGGAGTCTTTTCTTCA+AGG + chr2.3:45328311-45328330 None:intergenic 35.0%
! GTCAGATATAATAGGTGTTG+TGG + chr2.3:45328611-45328630 None:intergenic 35.0%
! TCTAGAACAGTAAACTTCTC+TGG + chr2.3:45326866-45326885 None:intergenic 35.0%
! TCTTTTGCTCCAGTGTAAAA+GGG + chr2.3:45328041-45328060 None:intergenic 35.0%
! TTCTTTTGCTCCAGTGTAAA+AGG + chr2.3:45328042-45328061 None:intergenic 35.0%
!! GGGAGTATTTGTATCTATGA+TGG - chr2.3:45329796-45329815 MS.gene062084:intron 35.0%
!! TTGAAATACCCCTTTTGGAA+CGG - chr2.3:45328099-45328118 MS.gene062084:intron 35.0%
!!! ATTTTGATTGTGTCGCAACA+TGG + chr2.3:45329888-45329907 None:intergenic 35.0%
!!! TGGTTTTGAAATACCCCTTT+TGG - chr2.3:45328094-45328113 MS.gene062084:intron 35.0%
!!! TTGTCAGCTACCTTTGTTTT+TGG + chr2.3:45330428-45330447 None:intergenic 35.0%
AAACCACTAAACAAGGCCAT+AGG + chr2.3:45327369-45327388 None:intergenic 40.0%
AACAAAGGTAGCTGACAACA+TGG - chr2.3:45330430-45330449 MS.gene062084:CDS 40.0%
AATCATCTCAGTGTAGCGTA+GGG + chr2.3:45329842-45329861 None:intergenic 40.0%
AGACATTCCCTAGACAACTA+AGG - chr2.3:45328061-45328080 MS.gene062084:intron 40.0%
ATTGGATTCATTCCAGATGC+TGG + chr2.3:45329739-45329758 None:intergenic 40.0%
CATCTGATTGTACCGTAGAA+AGG + chr2.3:45327755-45327774 None:intergenic 40.0%
CTGTAGATTGCAGATTATGG+CGG + chr2.3:45328676-45328695 None:intergenic 40.0%
CTTAACTCAGAGGCAGAAAA+AGG + chr2.3:45328155-45328174 None:intergenic 40.0%
CTTCTTCGTTTCACTAGACT+TGG + chr2.3:45329970-45329989 None:intergenic 40.0%
GAAACAAACACCAATCGTTG+AGG + chr2.3:45327464-45327483 None:intergenic 40.0%
GACAACATGGAGAACAACTT+CGG - chr2.3:45330443-45330462 MS.gene062084:CDS 40.0%
GATAGAACTCTTTGCAGGAA+AGG + chr2.3:45330093-45330112 None:intergenic 40.0%
GCCTTGAATTCAAGTAGCTA+AGG + chr2.3:45329429-45329448 None:intergenic 40.0%
GGCTCATAGTCATTGATAAG+TGG - chr2.3:45327519-45327538 MS.gene062084:intron 40.0%
GGTTTCAATGAAGGAACCAA+TGG - chr2.3:45330487-45330506 MS.gene062084:CDS 40.0%
GTACATCTCTAACAGTCAAG+TGG + chr2.3:45327637-45327656 None:intergenic 40.0%
GTGGAAGCTCATAGAAAATG+TGG + chr2.3:45329553-45329572 None:intergenic 40.0%
GTTAGAGATGTACTCGCAAT+TGG - chr2.3:45327644-45327663 MS.gene062084:intron 40.0%
GTTGGCTGAAATTCTTCCAT+TGG + chr2.3:45330506-45330525 None:intergenic 40.0%
TAACTCAGAGGCAGAAAAAG+GGG + chr2.3:45328153-45328172 None:intergenic 40.0%
TATGAGCTTCCACCAATATC+AGG - chr2.3:45329560-45329579 MS.gene062084:intron 40.0%
TCCTTCATTGAAACCGAATC+TGG + chr2.3:45330482-45330501 None:intergenic 40.0%
TCTTTGGTGGAACCTTTCTA+CGG - chr2.3:45327740-45327759 MS.gene062084:intron 40.0%
TGATGGAATTCCTGCAGAAA+AGG - chr2.3:45329813-45329832 MS.gene062084:intron 40.0%
TGATTTCATACAGAACAGGG+AGG + chr2.3:45329021-45329040 None:intergenic 40.0%
! ATAATAGGTGTTGTGGCCTA+CGG + chr2.3:45328604-45328623 None:intergenic 40.0%
! GCATTATTTCTTGCACCTGT+TGG + chr2.3:45329929-45329948 None:intergenic 40.0%
! TCTTCTCCTATTGCTGTTGA+TGG - chr2.3:45326887-45326906 MS.gene062084:CDS 40.0%
! TGTTGATGTGGCCTTAATCA+CGG - chr2.3:45329283-45329302 MS.gene062084:intron 40.0%
! TTCGAGTTTGTGTTTGAGCA+TGG - chr2.3:45327498-45327517 MS.gene062084:intron 40.0%
!! TATCCTATGGCCTTGTTTAG+TGG - chr2.3:45327363-45327382 MS.gene062084:CDS 40.0%
!!! TGAAATACCCCTTTTGGAAC+GGG - chr2.3:45328100-45328119 MS.gene062084:intron 40.0%
ACAAACACCAATCGTTGAGG+TGG + chr2.3:45327461-45327480 None:intergenic 45.0%
AGTGAATGTCTGCGTGCTAT+TGG + chr2.3:45330254-45330273 None:intergenic 45.0%
ATCATCACCCGTTCCAAAAG+GGG + chr2.3:45328110-45328129 None:intergenic 45.0%
CAATCATCTCAGTGTAGCGT+AGG + chr2.3:45329843-45329862 None:intergenic 45.0%
CAGTGTAAAAGGGTTTCAGC+AGG + chr2.3:45328031-45328050 None:intergenic 45.0%
CATCATCACCCGTTCCAAAA+GGG + chr2.3:45328111-45328130 None:intergenic 45.0%
CTAGCACCATCAACAGCAAT+AGG + chr2.3:45326896-45326915 None:intergenic 45.0%
CTAGCTCCAAAATGGTTGAG+GGG - chr2.3:45326912-45326931 MS.gene062084:CDS 45.0%
CTGCAAAGAGTTCTATCTGC+AGG - chr2.3:45330096-45330115 MS.gene062084:intron 45.0%
CTGCAGATAGAACTCTTTGC+AGG + chr2.3:45330098-45330117 None:intergenic 45.0%
GATCAAACCACCTCAACGAT+TGG - chr2.3:45327451-45327470 MS.gene062084:intron 45.0%
GCGGTCAAATACTGTTGATG+TGG - chr2.3:45329271-45329290 MS.gene062084:intron 45.0%
GCTAGCTCCAAAATGGTTGA+GGG - chr2.3:45326911-45326930 MS.gene062084:CDS 45.0%
GGCAGAAAAAGGGGATTTAG+CGG + chr2.3:45328144-45328163 None:intergenic 45.0%
TATGTTTCAGCGAGATTGGG+AGG - chr2.3:45329230-45329249 MS.gene062084:intron 45.0%
TCCTTCCTCGCCAAAAACAA+AGG - chr2.3:45330415-45330434 MS.gene062084:intron 45.0%
TGAAGGAACAGGTGAAGGAA+CGG + chr2.3:45330015-45330034 None:intergenic 45.0%
TGATAATATCGCTTCACCGC+AGG - chr2.3:45330061-45330080 MS.gene062084:intron 45.0%
TGCTAGCTCCAAAATGGTTG+AGG - chr2.3:45326910-45326929 MS.gene062084:CDS 45.0%
TGCTGACAATTCGCCAGATT+CGG - chr2.3:45330466-45330485 MS.gene062084:CDS 45.0%
TTCCTTCACCTGTTCCTTCA+AGG - chr2.3:45330015-45330034 MS.gene062084:intron 45.0%
TTGAATTCAAGGCCATTCGC+TGG - chr2.3:45329436-45329455 MS.gene062084:intron 45.0%
TTTAGGTCAATGCCAGCATC+TGG - chr2.3:45329724-45329743 MS.gene062084:intron 45.0%
! CATTGACCCCTCAACCATTT+TGG + chr2.3:45326921-45326940 None:intergenic 45.0%
! CTGCTGAAACCCTTTTACAC+TGG - chr2.3:45328029-45328048 MS.gene062084:intron 45.0%
! GCCAGATTCGGTTTCAATGA+AGG - chr2.3:45330478-45330497 MS.gene062084:CDS 45.0%
! TGATGGTGCTAGCTCCAAAA+TGG - chr2.3:45326904-45326923 MS.gene062084:CDS 45.0%
!!! ACCTTTGTTTTTGGCGAGGA+AGG + chr2.3:45330419-45330438 None:intergenic 45.0%
!!! AGCTACCTTTGTTTTTGGCG+AGG + chr2.3:45330423-45330442 None:intergenic 45.0%
!!! GTTTTTGGCGAGGAAGGATA+GGG + chr2.3:45330413-45330432 None:intergenic 45.0%
!!! TGTTTTTGGCGAGGAAGGAT+AGG + chr2.3:45330414-45330433 None:intergenic 45.0%
AACAGGTGAAGGAACGGGAA+TGG + chr2.3:45330009-45330028 None:intergenic 50.0%
ACAGGTGAAGGAACGGGAAT+GGG + chr2.3:45330008-45330027 None:intergenic 50.0%
AGATTGGGAGGCTTCTTCTG+CGG - chr2.3:45329242-45329261 MS.gene062084:intron 50.0%
AGTTCTATCTGCAGGCTGCA+AGG - chr2.3:45330104-45330123 MS.gene062084:intron 50.0%
CCTTAATCACGGTCGTGTTG+CGG - chr2.3:45329294-45329313 MS.gene062084:intron 50.0%
GAACTCTTTGCAGGAAAGGG+AGG + chr2.3:45330089-45330108 None:intergenic 50.0%
GAAGAAGGCCTTGAAGGAAC+AGG + chr2.3:45330026-45330045 None:intergenic 50.0%
GAAGGAACAGGTGAAGGAAC+GGG + chr2.3:45330014-45330033 None:intergenic 50.0%
GACAGAAAGGTCAACCGTGA+AGG + chr2.3:45328469-45328488 None:intergenic 50.0%
GCATCATCACCCGTTCCAAA+AGG + chr2.3:45328112-45328131 None:intergenic 50.0%
GCTTCTTCTGCGGAGAATTG+CGG - chr2.3:45329252-45329271 MS.gene062084:intron 50.0%
GGTCAACCGTGAAGGATACA+TGG + chr2.3:45328461-45328480 None:intergenic 50.0%
!! AGGGGATTTAGCGGATTCAG+AGG + chr2.3:45328135-45328154 None:intergenic 50.0%
!! GGGGATTTAGCGGATTCAGA+GGG + chr2.3:45328134-45328153 None:intergenic 50.0%
!! TTCTTCAGAAGCGTCGAGAC+AGG - chr2.3:45330282-45330301 MS.gene062084:intron 50.0%
CCGCAACACGACCGTGATTA+AGG + chr2.3:45329297-45329316 None:intergenic 55.0%
GCAGTTCCATGTGGCGAAGA+AGG + chr2.3:45330041-45330060 None:intergenic 55.0%
GGCCTTGAAGGAACAGGTGA+AGG + chr2.3:45330020-45330039 None:intergenic 55.0%
TCAAGGCCTTCTTCGCCACA+TGG - chr2.3:45330032-45330051 MS.gene062084:intron 55.0%
TGTGGCGAAGAAGGCCTTGA+AGG + chr2.3:45330032-45330051 None:intergenic 55.0%
! CGTAGGGCTACCTTTTCTGC+AGG + chr2.3:45329826-45329845 None:intergenic 55.0%
TGAGCACCACCAACGTGCCG+TGG - chr2.3:45328572-45328591 MS.gene062084:intron 65.0%
!! GCAGGAAAGGGAGGTGCCTG+CGG + chr2.3:45330080-45330099 None:intergenic 65.0%
CAGCTGCCACGGCACGTTGG+TGG + chr2.3:45328581-45328600 None:intergenic 70.0%
GTGGCCTACGGCAGCTGCCA+CGG + chr2.3:45328592-45328611 None:intergenic 70.0%
CGGCAGCTGCCACGGCACGT+TGG + chr2.3:45328584-45328603 None:intergenic 75.0%
CGTGCCGTGGCAGCTGCCGT+AGG - chr2.3:45328585-45328604 MS.gene062084:intron 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 45326836 45330541 45326836 ID=MS.gene062084
chr2.3 mRNA 45326836 45330541 45326836 ID=MS.gene062084.t1;Parent=MS.gene062084
chr2.3 exon 45330417 45330541 45330417 ID=MS.gene062084.t1.exon1;Parent=MS.gene062084.t1
chr2.3 CDS 45330417 45330541 45330417 ID=cds.MS.gene062084.t1;Parent=MS.gene062084.t1
chr2.3 exon 45327543 45327648 45327543 ID=MS.gene062084.t1.exon2;Parent=MS.gene062084.t1
chr2.3 CDS 45327543 45327648 45327543 ID=cds.MS.gene062084.t1;Parent=MS.gene062084.t1
chr2.3 exon 45327252 45327444 45327252 ID=MS.gene062084.t1.exon3;Parent=MS.gene062084.t1
chr2.3 CDS 45327252 45327444 45327252 ID=cds.MS.gene062084.t1;Parent=MS.gene062084.t1
chr2.3 exon 45327074 45327131 45327074 ID=MS.gene062084.t1.exon4;Parent=MS.gene062084.t1
chr2.3 CDS 45327074 45327131 45327074 ID=cds.MS.gene062084.t1;Parent=MS.gene062084.t1
chr2.3 exon 45326836 45326983 45326836 ID=MS.gene062084.t1.exon5;Parent=MS.gene062084.t1
chr2.3 CDS 45326836 45326983 45326836 ID=cds.MS.gene062084.t1;Parent=MS.gene062084.t1
Gene Sequence

>MS.gene062084

ATGGATGGTGTTACTGTTAAGGTTGAGCCAGAGAAGTTTACTGTTCTAGAATCTTCTCCTATTGCTGTTGATGGTGCTAGCTCCAAAATGGTTGAGGGGTCAATGATGAATTCTTCAGCAAACAAGTAAGTGTTTGATATTTTCACCAAAAAAGCATGTTTTTGATTACTGTTGTTTTATGTGTTTCACTTTTTATGTTTATACAACATGTTCCTTCAAGACCCTTTTTTTTGTTTCCAATTTTTGATGAATAATTACTCACTAGCTTGGTTATTTTAATTTTGGTTGAGTTTTTTTTTTTTATTCCATAAAAACATTAGATGAACAATGAACTAAGGTGTTTCTTTTCCAATTTTTGTACCTTAAATGGTATCAATTTGTATGAGATGAGTTCAAATATACCTGTAACCTTTAGTTATTTGAGTTAAAATTGTTCTGATGAGTTGATGGAACTTGTTAATTATAATGATCTTCTGAACTGATGCCATTTGACTCTACGAAAAAATGAAATTTTCGGTTAAATTGTTTATCCTATGGCCTTGTTTAGTGGTTTCTCCTAAAGTTTTCTTTGATCTACTTTTCTTACTGGAGCCTTTAATGAAATTCTTTCAACATGATCAAACCACCTCAACGATTGGTGTTTGTTTCGTATATATATTTTTTTCGAGTTTGTGTTTGAGCATGGCTCATAGTCATTGATAAGTGGGAACGCTTGTAGTATTTAAGTAGATCATAGTATTTAAACAAAGTTTTGTACTCTGTAACCCTAATTCATTGCATAATATAACGGTACTACAACCACTTGACTGTTAGAGATGTACTCGCAATTGGCCGAGCTCCATAATTAATCGTTGAGTTCTTCTGTGTTTATCTCAGAATTCTGATCTCAACTATACTTGTTACTTCTTTGGTGGAACCTTTCTACGGTACAATCAGATGATAGAGTATCATTGTTCTTATCTTAGTAGTTAAGAGTTGTTAAGGGATAGAATAAAGGGAAAAGAAGAGTAGTTAAGAGTTTTTTTTTTTTTTTTTTGAGAAGGCAAAAGAAAGCAATAAAATTCAAGAGAGGGCTTGAACCCTTATACAGCCATAAAACAGAAATTACACAAGATAAAAACAGAACTTAAGCTAGAGTTTGAATTCCAATTGTGATTGTACTATTAGCTTGTTGCAACCTATTCTTCTTTTACCTGCTGAAACCCTTTTACACTGGAGCAAAAGAAGACATTCCCTAGACAACTAAGGTTCAAATTTTTGGTTTTGAAATACCCCTTTTGGAACGGGTGATGATGCCCTCTGAATCCGCTAAATCCCCTTTTTCTGCCTCTGAGTTAAGAGTAGTTAAGAGTTGTTACTTGTTAGAGTAGTTAGTTAGCTGTTTGGTTAGGTAGAGAATACAATGATAGAGATGATCATTGAATATTGTTTCTTTTGTGAATAAAGTCATGACTCTATTGTGAAAGGGAAACCCTTGAAGAAAAGACTCCTAATCTTTTCGATTTTCATATAAAATTCTTCTTTCTTTTCAATTCAACTCTTGGATTACTAACAATATCATTGGCCTTTTCTAAATCGATGAAGACAAGTGTTCCTGTATTGTTTTGCGTCTTTTCATTGAACCATGTATCCTTCACGGTTGACCTTTCTGTCATAAGAGAAATTAATGCTGTTATATGCAAGTCAAATTTTTCGAACATTCTCTCAAATTACGCTTTTCATATTGTAAAATTAGATGAGCACCACCAACGTGCCGTGGCAGCTGCCGTAGGCCACAACACCTATTATATCTGACATAGACCACATCACCATGTTTATATGGTGGATTGTTGGCTTGCCGCCATAATCTGCAATCTACAGATAGATAACGCTGGATATTTTGTTTTTTTTTGGCTTTTCTGGTTAACATTAAAAATCAAATACACGATTTTTCTGAATTCTGAACCTTGGACTTAATACCTTTTCATTTCGCCAACTTTTTAAATAACTAAGATCATTGCTTGGCAAATATGATAGGGACATTTTCCGTCAAATTGAATATAAAGGAACTATAGTACAAACTCATCATCTTGATTCAGAAATGAACACAATTTTTTATTTGATTGAACAACAAAAGCATAGGAAATCATTGGGATTTAACCTCTGCTATCAAATAAATCTACTGAAGATGTGTTTGAGCATACCTCCCTGTTCTGTATGAAATCATTGGAAGTCTCACATGTAAAGATATGTCATTGTTTTTCATGGCCAGCATAATTTTACTTTGCTGTTTGTAGACAAACTTTAACACAAAAACTTTTAAGGCATAAGTTGATGAAATCCATGTGTGTAACCAAATTGAACTGGGACAAAAGTTTATGATGATAATCCACTCTAATGACTTATTCTATTACATATGTTTCAGCGAGATTGGGAGGCTTCTTCTGCGGAGAATTGCGGTCAAATACTGTTGATGTGGCCTTAATCACGGTCGTGTTGCGGTTTCAGCAACACAAAAACTGTTATGTCACGGCCGCATCACAAACCTTTATTTTAAACTCATAGCCATTATGAGTGTTAAGACTTACCTAGAATGCAACAATATCTAGTTCCTTAGCTACTTGAATTCAAGGCCATTCGCTGGTTAATCACATTTTCGTTCTATCTGATTGTTGTTAGTTTATGTTTATGCGTTTGTCTTTTGAATATAATTAACCGAATTGAAGTATTTTATGCCACATTTTCTATGAGCTTCCACCAATATCAGGCTTATCTATGCTTTTGTATTTGTTTGAATGGTTTTTTTTATTGTTGTTTTTTTCGTTATTTTTATTATTATCATTATTACTATATATTATTATCATTATTACTATATTAGTCATCAAAAACTGATTACTGTATTATTCTCTTTTAGGTCAATGCCAGCATCTGGAATGAATCCAATGATTGCTAATACAACTCAGCTTACCATCTTCTATAATGGGAGTATTTGTATCTATGATGGAATTCCTGCAGAAAAGGTAGCCCTACGCTACACTGAGATGATTGCTGAAACTTACAGCTCTATTTTCCATGTTGCGACACAATCAAAATCATATTAGACTCTATTTACCAACAGGTGCAAGAAATAATGCTCATTGCTGCTGCTGCTGCCAAGTCTAGTGAAACGAAGAAGATTGTGAAACAATCTCCCATTCCCGTTCCTTCACCTGTTCCTTCAAGGCCTTCTTCGCCACATGGAACTGCTGATAATATCGCTTCACCGCAGGCACCTCCCTTTCCTGCAAAGAGTTCTATCTGCAGGCTGCAAGGTGTGAATTTTCCTATTAACTATGTCTTCAACTATTTAGTAACTGTTTGAACTTGAATAGACTCTTAATGTTACCATAATTTATATGTCTCGTGTGGTTTTTCTTGATATCTCTCTTCAGAATTTCCAATAGCACGCAGACATTCACTTCAAATGTTTCTTCAGAAGCGTCGAGACAGGTACTGTCTACCTGCCATGTTTCAAATTTTGTGTATGACTGTTATATAGTACTAGTTTTCTTATTTGCATAATTTATGTTTGTACTACAGGTTGGGTAGTAAAGCTCCCTATCCTTCCTCGCCAAAAACAAAGGTAGCTGACAACATGGAGAACAACTTCGGTGCTGACAATTCGCCAGATTCGGTTTCAATGAAGGAACCAATGGAAGAATTTCAGCCAACTATATCTGCATCTTGA
Protein sequence

>MS.gene062084.t1

MDGVTVKVEPEKFTVLESSPIAVDGASSKMVEGSMMNSSANKSMPASGMNPMIANTTQLTIFYNGSICIYDGIPAEKVQEIMLIAAAAAKSSETKKIVKQSPIPVPSPVPSRPSSPHGTADNIASPQAPPFPAKSSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPKTKVADNMENNFGADNSPDSVSMKEPMEEFQPTISAS