Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013262.t1 | XP_003602691.1 | 88.6 | 735 | 70 | 3 | 1 | 730 | 1 | 726 | 2.40E-265 | 924.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013262.t1 | Q9MA92 | 46.0 | 687 | 286 | 13 | 1 | 674 | 1 | 615 | 3.0e-67 | 258.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013262.t1 | G7J2M7 | 88.6 | 735 | 70 | 3 | 1 | 730 | 1 | 726 | 1.7e-265 | 924.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002867 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene026637 | PPI |
| MS.gene071947 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene026126 | PPI |
| MS.gene002174 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene047900 | PPI |
| MS.gene013262 | MS.gene002864 | PPI |
| MS.gene013262 | MS.gene00896 | PPI |
| MS.gene013262 | MS.gene75229 | PPI |
| MS.gene013262 | MS.gene047904 | PPI |
| MS.gene013262 | MS.gene047083 | PPI |
| MS.gene01146 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene93193 | PPI |
| MS.gene013262 | MS.gene002865 | PPI |
| MS.gene013262 | MS.gene01827 | PPI |
| MS.gene00893 | MS.gene013262 | PPI |
| MS.gene33602 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene84485 | PPI |
| MS.gene013262 | MS.gene00895 | PPI |
| MS.gene071949 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene01838 | PPI |
| MS.gene047901 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene01143 | PPI |
| MS.gene013262 | MS.gene63019 | PPI |
| MS.gene01826 | MS.gene013262 | PPI |
| MS.gene013262 | MS.gene002176 | PPI |
| MS.gene013262 | MS.gene99533 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013262.t1 | MTR_3g096990 | 89.660 | 735 | 62 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1288 |
| MS.gene013262.t1 | MTR_3g096990 | 94.218 | 467 | 27 | 0 | 37 | 503 | 28 | 494 | 0.0 | 877 |
| MS.gene013262.t1 | MTR_3g096990 | 82.239 | 259 | 38 | 2 | 477 | 730 | 377 | 632 | 5.12e-135 | 412 |
| MS.gene013262.t1 | MTR_8g094760 | 62.188 | 521 | 153 | 6 | 1 | 501 | 1 | 497 | 0.0 | 557 |
| MS.gene013262.t1 | MTR_8g094760 | 55.642 | 257 | 107 | 4 | 474 | 727 | 379 | 631 | 5.50e-71 | 244 |
| MS.gene013262.t1 | MTR_8g094760 | 62.733 | 483 | 138 | 4 | 39 | 501 | 25 | 485 | 0.0 | 535 |
| MS.gene013262.t1 | MTR_8g094760 | 55.642 | 257 | 107 | 4 | 474 | 727 | 367 | 619 | 4.52e-71 | 244 |
| MS.gene013262.t1 | MTR_1g030010 | 42.020 | 683 | 327 | 16 | 68 | 725 | 147 | 785 | 3.61e-123 | 388 |
| MS.gene013262.t1 | MTR_3g113290 | 42.478 | 226 | 107 | 3 | 64 | 266 | 93 | 318 | 2.38e-37 | 150 |
| MS.gene013262.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 9.32e-34 | 139 |
| MS.gene013262.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.10e-33 | 139 |
| MS.gene013262.t1 | MTR_5g021810 | 33.223 | 301 | 168 | 5 | 1 | 268 | 1 | 301 | 7.04e-30 | 126 |
| MS.gene013262.t1 | MTR_5g021810 | 31.922 | 307 | 165 | 5 | 1 | 268 | 1 | 302 | 9.91e-29 | 123 |
| MS.gene013262.t1 | MTR_4g094848 | 33.566 | 286 | 131 | 6 | 1 | 258 | 1 | 255 | 5.38e-28 | 121 |
| MS.gene013262.t1 | MTR_5g016830 | 28.224 | 411 | 216 | 13 | 1 | 389 | 1 | 354 | 2.08e-22 | 103 |
| MS.gene013262.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 8.29e-12 | 69.3 |
| MS.gene013262.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 9.50e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013262.t1 | AT3G05270 | 41.860 | 688 | 313 | 14 | 1 | 674 | 1 | 615 | 6.16e-130 | 399 |
| MS.gene013262.t1 | AT3G05270 | 41.860 | 688 | 313 | 14 | 1 | 674 | 1 | 615 | 6.16e-130 | 399 |
| MS.gene013262.t1 | AT3G05270 | 41.860 | 688 | 313 | 14 | 1 | 674 | 1 | 615 | 6.16e-130 | 399 |
| MS.gene013262.t1 | AT1G21810 | 36.859 | 624 | 268 | 24 | 79 | 674 | 13 | 538 | 1.35e-72 | 248 |
| MS.gene013262.t1 | AT1G21810 | 36.859 | 624 | 268 | 24 | 79 | 674 | 13 | 538 | 1.35e-72 | 248 |
| MS.gene013262.t1 | AT1G77580 | 44.898 | 343 | 137 | 6 | 46 | 387 | 8 | 299 | 4.71e-69 | 238 |
| MS.gene013262.t1 | AT1G77580 | 44.898 | 343 | 137 | 6 | 46 | 387 | 8 | 299 | 1.10e-67 | 237 |
| MS.gene013262.t1 | AT1G77580 | 34.007 | 297 | 160 | 12 | 381 | 674 | 394 | 657 | 1.22e-12 | 72.0 |
| MS.gene013262.t1 | AT1G77580 | 44.898 | 343 | 137 | 6 | 46 | 387 | 42 | 333 | 1.38e-67 | 238 |
| MS.gene013262.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.00e-12 | 72.4 |
| MS.gene013262.t1 | AT1G77580 | 44.898 | 343 | 137 | 6 | 46 | 387 | 42 | 333 | 1.38e-67 | 238 |
| MS.gene013262.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.00e-12 | 72.4 |
| MS.gene013262.t1 | AT1G21810 | 34.413 | 494 | 213 | 22 | 211 | 674 | 3 | 415 | 1.54e-39 | 153 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 1.05e-37 | 152 |
| MS.gene013262.t1 | AT4G36120 | 33.555 | 301 | 167 | 5 | 1 | 268 | 1 | 301 | 1.88e-30 | 129 |
| MS.gene013262.t1 | AT4G36120 | 33.555 | 301 | 167 | 5 | 1 | 268 | 1 | 301 | 1.88e-30 | 129 |
| MS.gene013262.t1 | AT1G47900 | 37.281 | 228 | 120 | 3 | 64 | 268 | 114 | 341 | 6.29e-29 | 124 |
| MS.gene013262.t1 | AT1G47900 | 37.281 | 228 | 120 | 3 | 64 | 268 | 114 | 341 | 6.29e-29 | 124 |
| MS.gene013262.t1 | AT1G47900 | 37.281 | 228 | 120 | 3 | 64 | 268 | 114 | 341 | 6.50e-29 | 124 |
| MS.gene013262.t1 | AT2G23360 | 29.758 | 289 | 143 | 5 | 1 | 266 | 1 | 252 | 1.45e-16 | 84.7 |
Find 134 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAAACAACTCTTGTAAT+TGG | 0.181532 | 3.4:-87727480 | MS.gene013262:CDS |
| CCACTCAAGCTCGTCTCTTT+TGG | 0.200759 | 3.4:+87727453 | None:intergenic |
| GGCTTTGTCTGCTGATAATT+TGG | 0.210676 | 3.4:-87726180 | MS.gene013262:CDS |
| CTGCTTTACCAAATCTTCTT+TGG | 0.249118 | 3.4:+87727945 | None:intergenic |
| AAGAGAAAGCAAGCAATATT+TGG | 0.255370 | 3.4:-87727239 | MS.gene013262:CDS |
| GTAATACCTCGAGCTGCTTT+TGG | 0.280342 | 3.4:+87726696 | None:intergenic |
| TGCTTTCTCTTTCTGCAGCT+TGG | 0.289852 | 3.4:+87727251 | None:intergenic |
| GCTTTCTCTTTCTGCAGCTT+GGG | 0.293528 | 3.4:+87727252 | None:intergenic |
| TCACCGCCATCTTGGGGAGC+TGG | 0.312775 | 3.4:+87725629 | None:intergenic |
| CTAAATCCATCTATTAGCTT+TGG | 0.314378 | 3.4:-87725563 | MS.gene013262:CDS |
| GTCTGCTTCAATTACAGAAT+TGG | 0.315854 | 3.4:-87726978 | MS.gene013262:CDS |
| GATCAAGTTAGTCATCTTAA+TGG | 0.317493 | 3.4:-87727574 | MS.gene013262:CDS |
| TGATCTTCTGCAGAGGCTTC+AGG | 0.318270 | 3.4:-87727365 | MS.gene013262:CDS |
| CAACTGCTCACCGCCATCTT+GGG | 0.319126 | 3.4:+87725622 | None:intergenic |
| GCAGTATTTCAGTGTCTTGA+TGG | 0.319413 | 3.4:+87726102 | None:intergenic |
| TGTTCTGCTTAAGACCTTGT+AGG | 0.321070 | 3.4:+87725509 | None:intergenic |
| CACCGCCATCTTGGGGAGCT+GGG | 0.323771 | 3.4:+87725630 | None:intergenic |
| ATCAAGTTAGTCATCTTAAT+GGG | 0.324475 | 3.4:-87727573 | MS.gene013262:CDS |
| CATTAGTGCCAAAGAAGATT+TGG | 0.331279 | 3.4:-87727953 | MS.gene013262:CDS |
| GCAGCCTCGGAAATGACTTC+TGG | 0.331994 | 3.4:+87728042 | None:intergenic |
| GGAGAAGAAGCTAGCGAAAA+TGG | 0.341125 | 3.4:-87726759 | MS.gene013262:CDS |
| GGTTGGTCTGATGCAGTATC+TGG | 0.344154 | 3.4:+87726851 | None:intergenic |
| ACTGATGTGCATACTCTAAC+TGG | 0.369885 | 3.4:-87728000 | MS.gene013262:CDS |
| TCAACTGCTCACCGCCATCT+TGG | 0.379423 | 3.4:+87725621 | None:intergenic |
| GACAGCTTCTTCAGCAACTT+TGG | 0.380920 | 3.4:+87727918 | None:intergenic |
| ACAGATAGCATGTCAGATAA+TGG | 0.389217 | 3.4:-87727091 | MS.gene013262:CDS |
| GGTATCACAAAGTCGGATAA+AGG | 0.403989 | 3.4:-87726399 | MS.gene013262:CDS |
| GATGGATGATTTCCTCGAAA+TGG | 0.408615 | 3.4:-87726891 | MS.gene013262:CDS |
| TTCCCTGGCCAACATTTGGT+TGG | 0.409152 | 3.4:+87726834 | None:intergenic |
| CAGCAAGCCTTTCCATTTCG+AGG | 0.412193 | 3.4:+87726879 | None:intergenic |
| GAAAGTGATATGCGTAAATT+CGG | 0.418055 | 3.4:-87727049 | MS.gene013262:CDS |
| TGTGAATGACTCTGCATAAA+CGG | 0.424603 | 3.4:+87727111 | None:intergenic |
| TCTGTTCCCTGGCCAACATT+TGG | 0.426822 | 3.4:+87726830 | None:intergenic |
| TCATCTTAATGGGGAACTAA+AGG | 0.428665 | 3.4:-87727563 | MS.gene013262:CDS |
| CTGCATAGGGAAGGTGTTGA+TGG | 0.429525 | 3.4:-87726083 | MS.gene013262:CDS |
| GGCCATGAGTCATAATGCTT+TGG | 0.432790 | 3.4:+87727001 | None:intergenic |
| ACTTGATTCAGAGGACACTA+TGG | 0.441112 | 3.4:-87725675 | MS.gene013262:CDS |
| TAAAATTCAAAACCATTGAA+TGG | 0.442991 | 3.4:-87727285 | MS.gene013262:CDS |
| TTTGGCCAAGTGTGAAAAGT+TGG | 0.448967 | 3.4:-87726162 | MS.gene013262:CDS |
| CTCTTCATTTGACGCAGCCT+CGG | 0.453100 | 3.4:+87728029 | None:intergenic |
| AAAATTCAAAACCATTGAAT+GGG | 0.454203 | 3.4:-87727284 | MS.gene013262:CDS |
| GGTGCTCAAATCCCATTCAA+TGG | 0.455832 | 3.4:+87727273 | None:intergenic |
| TCTGCAGAGGCTTCAGGATG+TGG | 0.457307 | 3.4:-87727359 | MS.gene013262:CDS |
| GTTGAAGTCCCTTGCAACAT+TGG | 0.462272 | 3.4:-87725708 | MS.gene013262:CDS |
| AAGATTATCTGCTCATGATC+AGG | 0.469911 | 3.4:-87728913 | MS.gene013262:intron |
| TGCAAACAACTCTTGTAATT+GGG | 0.470150 | 3.4:-87727479 | MS.gene013262:CDS |
| AGTTGTTTGCAGCAGCTTCA+AGG | 0.473305 | 3.4:+87727491 | None:intergenic |
| AGACCAACCAAATGTTGGCC+AGG | 0.478188 | 3.4:-87726837 | MS.gene013262:CDS |
| AGAAGAACTGTGAGTTTCAC+TGG | 0.479117 | 3.4:+87728959 | None:intergenic |
| AGATAATGGAGAGAGGCTAT+TGG | 0.482617 | 3.4:-87727077 | MS.gene013262:CDS |
| CCGGGTAAAGGAAGCAGAGT+TGG | 0.490552 | 3.4:-87726669 | MS.gene013262:CDS |
| ACCACTGCACAAAACCGTAT+TGG | 0.496783 | 3.4:-87726935 | MS.gene013262:CDS |
| TCGGATAAAGGAAGCGGAGT+TGG | 0.497840 | 3.4:-87726387 | MS.gene013262:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.501906 | 3.4:-87727913 | MS.gene013262:intron |
| CATACACTGTGTCTGTTCCC+TGG | 0.502835 | 3.4:+87726819 | None:intergenic |
| AGCTCGAGGTATTACAAGGC+CGG | 0.505834 | 3.4:-87726688 | MS.gene013262:CDS |
| TATAGATGGAACGAAGGAGT+TGG | 0.511290 | 3.4:-87729013 | None:intergenic |
| AACTGCTCACCGCCATCTTG+GGG | 0.513505 | 3.4:+87725623 | None:intergenic |
| CCAAAAGAGACGAGCTTGAG+TGG | 0.515425 | 3.4:-87727453 | MS.gene013262:CDS |
| TTCAACTCAGATCGATCTGA+TGG | 0.516137 | 3.4:-87726909 | MS.gene013262:CDS |
| TTGGTAGGTTCTATCCTACA+AGG | 0.519182 | 3.4:-87725523 | MS.gene013262:CDS |
| ATATGCGTAAATTCGGAGGC+AGG | 0.521010 | 3.4:-87727042 | MS.gene013262:CDS |
| GGTATTACAAGGCCGGGTAA+AGG | 0.522637 | 3.4:-87726681 | MS.gene013262:CDS |
| GAGCCACGACATTCAATCTC+TGG | 0.528546 | 3.4:+87727179 | None:intergenic |
| AGGAAGAGATTGACAAAGAG+CGG | 0.530251 | 3.4:-87726484 | MS.gene013262:CDS |
| AGACACTGAAATACTGCATA+GGG | 0.534338 | 3.4:-87726096 | MS.gene013262:CDS |
| CATTCTCTGTCAACGATCGC+AGG | 0.538257 | 3.4:-87727150 | MS.gene013262:CDS |
| TCTGAGTTGAAAGGCCAATA+CGG | 0.539705 | 3.4:+87726921 | None:intergenic |
| GATAAAGGAAGCGGAGTTGG+AGG | 0.539727 | 3.4:-87726384 | MS.gene013262:CDS |
| AGGAAGAGATTGAGAAAGAG+CGG | 0.539922 | 3.4:-87726202 | MS.gene013262:CDS |
| CGGAAAACCATCGAATCTCT+AGG | 0.540417 | 3.4:-87725737 | MS.gene013262:CDS |
| ACCGCCATCTTGGGGAGCTG+GGG | 0.541230 | 3.4:+87725631 | None:intergenic |
| GGTTCAAAAGAATGATGCAT+TGG | 0.543300 | 3.4:-87726780 | MS.gene013262:CDS |
| GGGAACTAAAGGATTGTATG+AGG | 0.545681 | 3.4:-87727552 | MS.gene013262:CDS |
| GTGGAAAGTTACTGAGCTTG+AGG | 0.546401 | 3.4:-87727434 | MS.gene013262:CDS |
| ATTATATTTAGGCTGGGAGA+AGG | 0.546698 | 3.4:-87727665 | MS.gene013262:intron |
| CTGCTGTCCTAGAGATTCGA+TGG | 0.547891 | 3.4:+87725730 | None:intergenic |
| GAGGCTTCAGGATGTGGAGA+GGG | 0.549030 | 3.4:-87727353 | MS.gene013262:CDS |
| AGACACAGTGTATGCTGAAG+TGG | 0.551827 | 3.4:-87726810 | MS.gene013262:CDS |
| GCAGGAGAAGGAACTAGCAT+TGG | 0.555868 | 3.4:-87725783 | MS.gene013262:intron |
| AGACTTCATACTTGATTCAG+AGG | 0.557101 | 3.4:-87725684 | MS.gene013262:CDS |
| TCGGAAATGACTTCTGGAGA+TGG | 0.558364 | 3.4:+87728048 | None:intergenic |
| AACCAAAGCATTATGACTCA+TGG | 0.559723 | 3.4:-87727003 | MS.gene013262:CDS |
| CGAGGCTGCGTCAAATGAAG+AGG | 0.560290 | 3.4:-87728028 | MS.gene013262:CDS |
| GGTAAAGGAAGCAGAGTTGG+AGG | 0.562324 | 3.4:-87726666 | MS.gene013262:CDS |
| GGAAGAGATTGACAAAGAGC+GGG | 0.567707 | 3.4:-87726483 | MS.gene013262:CDS |
| CCAACTCTGCTTCCTTTACC+CGG | 0.569027 | 3.4:+87726669 | None:intergenic |
| TGGCGAGTTAATGTTCAAGC+AGG | 0.569151 | 3.4:-87726063 | MS.gene013262:intron |
| AGCTCAAGGTATCACAAAGT+CGG | 0.573684 | 3.4:-87726406 | MS.gene013262:CDS |
| GCTCGAGGTATTACAAGGCC+GGG | 0.574482 | 3.4:-87726687 | MS.gene013262:CDS |
| TGCAGATAAACTCGAGCTAG+AGG | 0.575538 | 3.4:-87726453 | MS.gene013262:CDS |
| GGAAGAGATTGAGAAAGAGC+GGG | 0.579765 | 3.4:-87726201 | MS.gene013262:CDS |
| AAGACACTGAAATACTGCAT+AGG | 0.582843 | 3.4:-87726097 | MS.gene013262:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.4:-87726258 | MS.gene013262:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.4:-87726540 | MS.gene013262:CDS |
| GGAGGCAGGGAGATAAATGA+AGG | 0.583949 | 3.4:-87727028 | MS.gene013262:CDS |
| ACAAAGTCGGATAAAGGAAG+CGG | 0.584889 | 3.4:-87726393 | MS.gene013262:CDS |
| ATGATTTCCTCGAAATGGAA+AGG | 0.588479 | 3.4:-87726886 | MS.gene013262:CDS |
| TGAAGTCTTCCAATGTTGCA+AGG | 0.589752 | 3.4:+87725699 | None:intergenic |
| ACAACCCCAGCTCCCCAAGA+TGG | 0.590488 | 3.4:-87725635 | MS.gene013262:CDS |
| AAGCAGCTCGAGGTATTACA+AGG | 0.592236 | 3.4:-87726692 | MS.gene013262:CDS |
| TGGAACGAAGGAGTTGGATG+TGG | 0.592305 | 3.4:-87729007 | MS.gene013262:CDS |
| TCAGATCGATCTGAGTTGAA+AGG | 0.597854 | 3.4:+87726912 | None:intergenic |
| GCATCAGACCAACCAAATGT+TGG | 0.607554 | 3.4:-87726842 | MS.gene013262:CDS |
| TAATGGAGAGAGGCTATTGG+TGG | 0.608912 | 3.4:-87727074 | MS.gene013262:CDS |
| AGAACCTACCAAAACTGAAG+TGG | 0.609934 | 3.4:+87725534 | None:intergenic |
| GACCAACCAAATGTTGGCCA+GGG | 0.612070 | 3.4:-87726836 | MS.gene013262:CDS |
| GATAATCTTTCAGAATGAGA+TGG | 0.612885 | 3.4:+87728927 | None:intergenic |
| GAAGTCTTCCAATGTTGCAA+GGG | 0.615238 | 3.4:+87725700 | None:intergenic |
| AGAGGCTTCAGGATGTGGAG+AGG | 0.619121 | 3.4:-87727354 | MS.gene013262:CDS |
| TATTATTATAGATGGAACGA+AGG | 0.620108 | 3.4:-87729019 | None:intergenic |
| GGCACTAATGTCTAAGAGAG+CGG | 0.621884 | 3.4:+87727966 | None:intergenic |
| TGGAGATGGAACAGTTTGAG+TGG | 0.623998 | 3.4:+87728062 | None:intergenic |
| AGATAAAATTGAGCTAGAGA+TGG | 0.626676 | 3.4:-87726732 | MS.gene013262:CDS |
| GTATGCTGAAGTGGAAGCAT+TGG | 0.628182 | 3.4:-87726801 | MS.gene013262:CDS |
| ACCCCAGCTCCCCAAGATGG+CGG | 0.628407 | 3.4:-87725632 | MS.gene013262:CDS |
| ATCTCCAGAAGTCATTTCCG+AGG | 0.630862 | 3.4:-87728046 | MS.gene013262:CDS |
| GAGAGCTGCTCAAACTGAGG+CGG | 0.637369 | 3.4:-87726537 | MS.gene013262:CDS |
| TTAACTCTGATCTTCTGCAG+AGG | 0.638024 | 3.4:-87727372 | MS.gene013262:CDS |
| TTTGGAGAGTATAACGAAGG+TGG | 0.647288 | 3.4:-87727221 | MS.gene013262:CDS |
| TATGCGTAAATTCGGAGGCA+GGG | 0.647344 | 3.4:-87727041 | MS.gene013262:CDS |
| AATTCTGTAATTGAAGCAGA+CGG | 0.653774 | 3.4:+87726980 | None:intergenic |
| AGATAAACTCGAGCTAGAGG+TGG | 0.661721 | 3.4:-87726450 | MS.gene013262:CDS |
| TGAACTACAATCTCGACTCG+AGG | 0.662262 | 3.4:-87727311 | MS.gene013262:CDS |
| TCAAGTTAGTCATCTTAATG+GGG | 0.667984 | 3.4:-87727572 | MS.gene013262:CDS |
| TGCTGCAAAACAGCAGAATG+CGG | 0.670569 | 3.4:-87727605 | MS.gene013262:CDS |
| AGTGATATGCGTAAATTCGG+AGG | 0.673306 | 3.4:-87727046 | MS.gene013262:CDS |
| GCATGTCAGATAATGGAGAG+AGG | 0.673908 | 3.4:-87727084 | MS.gene013262:CDS |
| CGAGTGCCAAAAGCAGCTCG+AGG | 0.681288 | 3.4:-87726702 | MS.gene013262:CDS |
| ACTGAAATACTGCATAGGGA+AGG | 0.684433 | 3.4:-87726092 | MS.gene013262:CDS |
| GTGCCAGAGATTGAATGTCG+TGG | 0.689035 | 3.4:-87727182 | MS.gene013262:CDS |
| ACTAATGTCTAAGAGAGCGG+CGG | 0.698941 | 3.4:+87727969 | None:intergenic |
| GAAGAAGCTAGCGAAAATGG+AGG | 0.702295 | 3.4:-87726756 | MS.gene013262:CDS |
| ATATTTGGAGAGTATAACGA+AGG | 0.713817 | 3.4:-87727224 | MS.gene013262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAATTGAATATTATTTA+AGG | + | chr3.4:87726129-87726148 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATAAACCATAA+CGG | + | chr3.4:87726768-87726787 | None:intergenic | 10.0% |
| !!! | CATTGTTTTATTTTATTCTA+CGG | - | chr3.4:87726319-87726338 | MS.gene013262:CDS | 15.0% |
| !!! | TTACATGATTTTAAGTTTAT+AGG | - | chr3.4:87726285-87726304 | MS.gene013262:CDS | 15.0% |
| !! | AAAATTCAAAACCATTGAAT+GGG | - | chr3.4:87727241-87727260 | MS.gene013262:CDS | 20.0% |
| !! | AATGAAGGAGAAATTTAAAA+TGG | + | chr3.4:87726652-87726671 | None:intergenic | 20.0% |
| !! | ATATTTGATTATATTTAGGC+TGG | - | chr3.4:87726853-87726872 | MS.gene013262:CDS | 20.0% |
| !! | TAAAATTCAAAACCATTGAA+TGG | - | chr3.4:87727240-87727259 | MS.gene013262:CDS | 20.0% |
| !! | TATTTGATTATATTTAGGCT+GGG | - | chr3.4:87726854-87726873 | MS.gene013262:CDS | 20.0% |
| !!! | AGTTAAAATTTTAACATGTG+AGG | - | chr3.4:87728628-87728647 | MS.gene013262:intron | 20.0% |
| !!! | ATTCAACAAGGTTTTTAATA+GGG | + | chr3.4:87726241-87726260 | None:intergenic | 20.0% |
| !!! | CAAAATTCCAAAATATTTTC+TGG | + | chr3.4:87728663-87728682 | None:intergenic | 20.0% |
| !!! | CAGAAAATATTTTGGAATTT+TGG | - | chr3.4:87728661-87728680 | MS.gene013262:intron | 20.0% |
| !!! | TCATAAACCATCTTATATTT+TGG | - | chr3.4:87728708-87728727 | MS.gene013262:intron | 20.0% |
| !!! | TTAACTTCTATTTTCAATAC+AGG | - | chr3.4:87725661-87725680 | MS.gene013262:CDS | 20.0% |
| !!! | TTTTAAATTTCTCCTTCATT+TGG | - | chr3.4:87726652-87726671 | MS.gene013262:CDS | 20.0% |
| ! | AATCAGACCAAAAAACAAAA+AGG | + | chr3.4:87726721-87726740 | None:intergenic | 25.0% |
| ! | AATGATGCCAAAATATAAGA+TGG | + | chr3.4:87728718-87728737 | None:intergenic | 25.0% |
| ! | ACCTAATATCATCTAAACAT+AGG | - | chr3.4:87726800-87726819 | MS.gene013262:CDS | 25.0% |
| ! | ACCTATGTTTAGATGATATT+AGG | + | chr3.4:87726804-87726823 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGTCATCTTAAT+GGG | - | chr3.4:87726952-87726971 | MS.gene013262:CDS | 25.0% |
| ! | ATCTAAACATAGGTTATCAA+AGG | - | chr3.4:87726810-87726829 | MS.gene013262:CDS | 25.0% |
| ! | CTCTCATTAAAACAAAATTG+AGG | - | chr3.4:87725862-87725881 | MS.gene013262:intron | 25.0% |
| ! | TAGTAACTAGTAACCATATT+TGG | - | chr3.4:87725754-87725773 | MS.gene013262:CDS | 25.0% |
| !! | GATTCAACAAGGTTTTTAAT+AGG | + | chr3.4:87726242-87726261 | None:intergenic | 25.0% |
| !!! | AGGTTGTCATTTTTGTTAAT+AGG | - | chr3.4:87725783-87725802 | MS.gene013262:intron | 25.0% |
| AAGAGAAAGCAAGCAATATT+TGG | - | chr3.4:87727286-87727305 | MS.gene013262:CDS | 30.0% | |
| AAGCAACAATTTGAACAATC+AGG | + | chr3.4:87726388-87726407 | None:intergenic | 30.0% | |
| AATAACGTAGCCAAAAAAAG+AGG | + | chr3.4:87725640-87725659 | None:intergenic | 30.0% | |
| AATTCTGTAATTGAAGCAGA+CGG | + | chr3.4:87727548-87727567 | None:intergenic | 30.0% | |
| AGATAAAATTGAGCTAGAGA+TGG | - | chr3.4:87727793-87727812 | MS.gene013262:intron | 30.0% | |
| AGCAACAATTTGAACAATCA+GGG | + | chr3.4:87726387-87726406 | None:intergenic | 30.0% | |
| CTTGTATTCTTGATTCAACA+AGG | + | chr3.4:87726253-87726272 | None:intergenic | 30.0% | |
| GAAAGTGATATGCGTAAATT+CGG | - | chr3.4:87727476-87727495 | MS.gene013262:CDS | 30.0% | |
| GATAATCTTTCAGAATGAGA+TGG | + | chr3.4:87725601-87725620 | None:intergenic | 30.0% | |
| GATCAAGTTAGTCATCTTAA+TGG | - | chr3.4:87726951-87726970 | MS.gene013262:CDS | 30.0% | |
| TAAAATTGACAGCCAAATGA+AGG | + | chr3.4:87726667-87726686 | None:intergenic | 30.0% | |
| TCAAGTTAGTCATCTTAATG+GGG | - | chr3.4:87726953-87726972 | MS.gene013262:CDS | 30.0% | |
| TGCAAACAACTCTTGTAATT+GGG | - | chr3.4:87727046-87727065 | MS.gene013262:CDS | 30.0% | |
| TTCAATGTAATCACATGTGT+CGG | + | chr3.4:87726014-87726033 | None:intergenic | 30.0% | |
| ! | AAATTGTTGCTTGTTTGAGA+CGG | - | chr3.4:87726396-87726415 | MS.gene013262:CDS | 30.0% |
| ! | AAGGTTTTTAATAGGGACTT+GGG | + | chr3.4:87726234-87726253 | None:intergenic | 30.0% |
| ! | ATATTTGGAGAGTATAACGA+AGG | - | chr3.4:87727301-87727320 | MS.gene013262:CDS | 30.0% |
| ! | CCAGATTCCAGAAAATATTT+TGG | - | chr3.4:87728653-87728672 | MS.gene013262:intron | 30.0% |
| ! | CTAAATCCATCTATTAGCTT+TGG | - | chr3.4:87728962-87728981 | MS.gene013262:CDS | 30.0% |
| ! | CTTCTATTTTCAATACAGGA+AGG | - | chr3.4:87725665-87725684 | MS.gene013262:CDS | 30.0% |
| ! | CTTTTTCCAAAGCTAATAGA+TGG | + | chr3.4:87728971-87728990 | None:intergenic | 30.0% |
| ! | TATTTTCAATACAGGAAGGA+GGG | - | chr3.4:87725669-87725688 | MS.gene013262:CDS | 30.0% |
| !!! | AGCATTCTCATTTTTTGCTT+GGG | + | chr3.4:87728239-87728258 | None:intergenic | 30.0% |
| !!! | AGCTTTCTCATTTTTTTCTC+GGG | + | chr3.4:87727957-87727976 | None:intergenic | 30.0% |
| !!! | CAGCTTTCTCATTTTTTTCT+CGG | + | chr3.4:87727958-87727977 | None:intergenic | 30.0% |
| !!! | CCAAAATATTTTCTGGAATC+TGG | + | chr3.4:87728656-87728675 | None:intergenic | 30.0% |
| !!! | GTATCGACCTTTTTGTTTTT+TGG | - | chr3.4:87726711-87726730 | MS.gene013262:CDS | 30.0% |
| AAGAAGAAGAAGAGAGATTG+AGG | - | chr3.4:87725812-87725831 | MS.gene013262:intron | 35.0% | |
| AAGACACTGAAATACTGCAT+AGG | - | chr3.4:87728428-87728447 | MS.gene013262:intron | 35.0% | |
| AAGATTATCTGCTCATGATC+AGG | - | chr3.4:87725612-87725631 | MS.gene013262:CDS | 35.0% | |
| AATGTTCAAGCAGGTAAGTT+TGG | - | chr3.4:87728471-87728490 | MS.gene013262:intron | 35.0% | |
| ACAACCTTCACTTCCAAATA+TGG | + | chr3.4:87725770-87725789 | None:intergenic | 35.0% | |
| ACAGATAGCATGTCAGATAA+TGG | - | chr3.4:87727434-87727453 | MS.gene013262:CDS | 35.0% | |
| AGAAGAAGAAGAGAGATTGA+GGG | - | chr3.4:87725813-87725832 | MS.gene013262:intron | 35.0% | |
| AGACACTGAAATACTGCATA+GGG | - | chr3.4:87728429-87728448 | MS.gene013262:intron | 35.0% | |
| AGACTTCATACTTGATTCAG+AGG | - | chr3.4:87728841-87728860 | MS.gene013262:intron | 35.0% | |
| AGGGATCTCAAACTTAAAAG+CGG | + | chr3.4:87726368-87726387 | None:intergenic | 35.0% | |
| ATGATTTCCTCGAAATGGAA+AGG | - | chr3.4:87727639-87727658 | MS.gene013262:CDS | 35.0% | |
| ATTATATTTAGGCTGGGAGA+AGG | - | chr3.4:87726860-87726879 | MS.gene013262:CDS | 35.0% | |
| CATTAGTGCCAAAGAAGATT+TGG | - | chr3.4:87726572-87726591 | MS.gene013262:CDS | 35.0% | |
| CTGCAAACAACTCTTGTAAT+TGG | - | chr3.4:87727045-87727064 | MS.gene013262:CDS | 35.0% | |
| CTGCTTTACCAAATCTTCTT+TGG | + | chr3.4:87726583-87726602 | None:intergenic | 35.0% | |
| GATCTCAAAAATCTGTTCAC+TGG | - | chr3.4:87728018-87728037 | MS.gene013262:CDS | 35.0% | |
| GGTTCAAAAGAATGATGCAT+TGG | - | chr3.4:87727745-87727764 | MS.gene013262:intron | 35.0% | |
| GTAACCATATTTGGAAGTGA+AGG | - | chr3.4:87725763-87725782 | MS.gene013262:CDS | 35.0% | |
| GTCTGCTTCAATTACAGAAT+TGG | - | chr3.4:87727547-87727566 | MS.gene013262:CDS | 35.0% | |
| TCATCTTAATGGGGAACTAA+AGG | - | chr3.4:87726962-87726981 | MS.gene013262:CDS | 35.0% | |
| TGTGAATGACTCTGCATAAA+CGG | + | chr3.4:87727417-87727436 | None:intergenic | 35.0% | |
| ! | AACAATCTCACTCTTTTTGG+AGG | - | chr3.4:87728558-87728577 | MS.gene013262:intron | 35.0% |
| ! | AACCAAAGCATTATGACTCA+TGG | - | chr3.4:87727522-87727541 | MS.gene013262:CDS | 35.0% |
| ! | ACGCCTTCAATCAAAAGTAT+TGG | + | chr3.4:87725956-87725975 | None:intergenic | 35.0% |
| ! | ATTTTCAATACAGGAAGGAG+GGG | - | chr3.4:87725670-87725689 | MS.gene013262:CDS | 35.0% |
| ! | CAAGGTTTTTAATAGGGACT+TGG | + | chr3.4:87726235-87726254 | None:intergenic | 35.0% |
| ! | CTATTTTCAATACAGGAAGG+AGG | - | chr3.4:87725668-87725687 | MS.gene013262:CDS | 35.0% |
| ! | GAGGGAAAGCTAAAATGTTT+TGG | - | chr3.4:87725831-87725850 | MS.gene013262:intron | 35.0% |
| ! | GCTAACAATCTCACTCTTTT+TGG | - | chr3.4:87728555-87728574 | MS.gene013262:intron | 35.0% |
| ! | TTCTTCCAACTTTTCACACT+TGG | + | chr3.4:87728371-87728390 | None:intergenic | 35.0% |
| !! | ATTTTGGCATCATTTGATGC+AGG | - | chr3.4:87728724-87728743 | MS.gene013262:intron | 35.0% |
| !! | GCACCAATACTTTTGATTGA+AGG | - | chr3.4:87725950-87725969 | MS.gene013262:intron | 35.0% |
| !!! | CAGCATTCTCATTTTTTGCT+TGG | + | chr3.4:87728240-87728259 | None:intergenic | 35.0% |
| !!! | TGATCAGGTACCTCTTTTTT+TGG | - | chr3.4:87725627-87725646 | MS.gene013262:CDS | 35.0% |
| AACTTAAAAGCGGACAGAAC+AGG | + | chr3.4:87726358-87726377 | None:intergenic | 40.0% | |
| ACAAAGTCGGATAAAGGAAG+CGG | - | chr3.4:87728132-87728151 | MS.gene013262:intron | 40.0% | |
| ACTGAAATACTGCATAGGGA+AGG | - | chr3.4:87728433-87728452 | MS.gene013262:intron | 40.0% | |
| ACTGATGTGCATACTCTAAC+TGG | - | chr3.4:87726525-87726544 | MS.gene013262:CDS | 40.0% | |
| ACTTGATTCAGAGGACACTA+TGG | - | chr3.4:87728850-87728869 | MS.gene013262:intron | 40.0% | |
| AGAACCTACCAAAACTGAAG+TGG | + | chr3.4:87728994-87729013 | None:intergenic | 40.0% | |
| AGAAGAACTGTGAGTTTCAC+TGG | + | chr3.4:87725569-87725588 | None:intergenic | 40.0% | |
| AGCTAGCTGTTCTTTGTGTT+TGG | - | chr3.4:87725705-87725724 | MS.gene013262:CDS | 40.0% | |
| AGGAAGAGATTGACAAAGAG+CGG | - | chr3.4:87728041-87728060 | MS.gene013262:CDS | 40.0% | |
| AGGAAGAGATTGAGAAAGAG+CGG | - | chr3.4:87728323-87728342 | MS.gene013262:intron | 40.0% | |
| AGTGATATGCGTAAATTCGG+AGG | - | chr3.4:87727479-87727498 | MS.gene013262:CDS | 40.0% | |
| ATAGGGACTTGGGTATTATG+AGG | + | chr3.4:87726224-87726243 | None:intergenic | 40.0% | |
| CAAGCTATGAAGCACAAACA+CGG | + | chr3.4:87726086-87726105 | None:intergenic | 40.0% | |
| CTAGCTGTTCTTTGTGTTTG+GGG | - | chr3.4:87725707-87725726 | MS.gene013262:CDS | 40.0% | |
| CTCAAAAATCTGTTCACTGG+AGG | - | chr3.4:87728021-87728040 | MS.gene013262:CDS | 40.0% | |
| GAAGTCTTCCAATGTTGCAA+GGG | + | chr3.4:87728828-87728847 | None:intergenic | 40.0% | |
| GATGGATGATTTCCTCGAAA+TGG | - | chr3.4:87727634-87727653 | MS.gene013262:CDS | 40.0% | |
| GCAGTATTTCAGTGTCTTGA+TGG | + | chr3.4:87728426-87728445 | None:intergenic | 40.0% | |
| GCTAGCTGTTCTTTGTGTTT+GGG | - | chr3.4:87725706-87725725 | MS.gene013262:CDS | 40.0% | |
| GGGAACTAAAGGATTGTATG+AGG | - | chr3.4:87726973-87726992 | MS.gene013262:CDS | 40.0% | |
| GGTATCACAAAGTCGGATAA+AGG | - | chr3.4:87728126-87728145 | MS.gene013262:intron | 40.0% | |
| TGAAGTCTTCCAATGTTGCA+AGG | + | chr3.4:87728829-87728848 | None:intergenic | 40.0% | |
| TTAACTCTGATCTTCTGCAG+AGG | - | chr3.4:87727153-87727172 | MS.gene013262:CDS | 40.0% | |
| TTCAACTCAGATCGATCTGA+TGG | - | chr3.4:87727616-87727635 | MS.gene013262:CDS | 40.0% | |
| TTGGTAGGTTCTATCCTACA+AGG | - | chr3.4:87729002-87729021 | MS.gene013262:CDS | 40.0% | |
| TTTGGCCAAGTGTGAAAAGT+TGG | - | chr3.4:87728363-87728382 | MS.gene013262:intron | 40.0% | |
| ! | AGCTCAAGGTATCACAAAGT+CGG | - | chr3.4:87728119-87728138 | MS.gene013262:intron | 40.0% |
| ! | ATGCCACTTAAATACTCCAC+CGG | - | chr3.4:87726159-87726178 | MS.gene013262:CDS | 40.0% |
| ! | CTAGAGATTCGATGGTTTTC+CGG | + | chr3.4:87728790-87728809 | None:intergenic | 40.0% |
| ! | CTAGTAGATTTTCTGAGTGC+CGG | - | chr3.4:87728768-87728787 | MS.gene013262:intron | 40.0% |
| ! | GGAAAAAGCCACTTCAGTTT+TGG | - | chr3.4:87728983-87729002 | MS.gene013262:CDS | 40.0% |
| ! | GGCTTTGTCTGCTGATAATT+TGG | - | chr3.4:87728345-87728364 | MS.gene013262:intron | 40.0% |
| ! | TAGTATGACTATGAGGTGTC+CGG | + | chr3.4:87726181-87726200 | None:intergenic | 40.0% |
| ! | TCAGATCGATCTGAGTTGAA+AGG | + | chr3.4:87727616-87727635 | None:intergenic | 40.0% |
| ! | TCTGAGTTGAAAGGCCAATA+CGG | + | chr3.4:87727607-87727626 | None:intergenic | 40.0% |
| ! | TTCAAGTTCTGTCTCCGTTA+TGG | - | chr3.4:87726751-87726770 | MS.gene013262:CDS | 40.0% |
| ! | TTTGGAGAGTATAACGAAGG+TGG | - | chr3.4:87727304-87727323 | MS.gene013262:CDS | 40.0% |
| !! | AAAGCCACTTCAGTTTTGGT+AGG | - | chr3.4:87728987-87729006 | MS.gene013262:CDS | 40.0% |
| !! | AGATAATGGAGAGAGGCTAT+TGG | - | chr3.4:87727448-87727467 | MS.gene013262:CDS | 40.0% |
| !! | ATCTCACTCTTTTTGGAGGA+TGG | - | chr3.4:87728562-87728581 | MS.gene013262:intron | 40.0% |
| !! | CAAAAGTATTGGTGCTACAG+AGG | + | chr3.4:87725945-87725964 | None:intergenic | 40.0% |
| !! | GTGATACCTTGAGCTGTTTT+TGG | + | chr3.4:87728114-87728133 | None:intergenic | 40.0% |
| AAAGGTCGATACCAATGCCT+CGG | + | chr3.4:87726703-87726722 | None:intergenic | 45.0% | |
| ACCACTGCACAAAACCGTAT+TGG | - | chr3.4:87727590-87727609 | MS.gene013262:CDS | 45.0% | |
| ACTAATGTCTAAGAGAGCGG+CGG | + | chr3.4:87726559-87726578 | None:intergenic | 45.0% | |
| ACTAGTTACTACGACTACCC+TGG | + | chr3.4:87725745-87725764 | None:intergenic | 45.0% | |
| AGACACAGTGTATGCTGAAG+TGG | - | chr3.4:87727715-87727734 | MS.gene013262:intron | 45.0% | |
| AGATAAACTCGAGCTAGAGG+TGG | - | chr3.4:87728075-87728094 | MS.gene013262:intron | 45.0% | |
| AGTTGTTTGCAGCAGCTTCA+AGG | + | chr3.4:87727037-87727056 | None:intergenic | 45.0% | |
| ATATGCGTAAATTCGGAGGC+AGG | - | chr3.4:87727483-87727502 | MS.gene013262:CDS | 45.0% | |
| ATCAGTGTATGTGTCATGCC+TGG | - | chr3.4:87726057-87726076 | MS.gene013262:intron | 45.0% | |
| ATCTCCAGAAGTCATTTCCG+AGG | - | chr3.4:87726479-87726498 | MS.gene013262:CDS | 45.0% | |
| CGGAAAACCATCGAATCTCT+AGG | - | chr3.4:87728788-87728807 | MS.gene013262:intron | 45.0% | |
| CGTCGAGTAGTATGACTATG+AGG | + | chr3.4:87726188-87726207 | None:intergenic | 45.0% | |
| CTAGTTACTACGACTACCCT+GGG | + | chr3.4:87725744-87725763 | None:intergenic | 45.0% | |
| GAAGAAGCTAGCGAAAATGG+AGG | - | chr3.4:87727769-87727788 | MS.gene013262:intron | 45.0% | |
| GACAGCTTCTTCAGCAACTT+TGG | + | chr3.4:87726610-87726629 | None:intergenic | 45.0% | |
| GCATCAGACCAACCAAATGT+TGG | - | chr3.4:87727683-87727702 | MS.gene013262:intron | 45.0% | |
| GCATCATTTGATGCAGGAGA+AGG | - | chr3.4:87728730-87728749 | MS.gene013262:intron | 45.0% | |
| GCTTTCTCTTTCTGCAGCTT+GGG | + | chr3.4:87727276-87727295 | None:intergenic | 45.0% | |
| GGAAGAGATTGACAAAGAGC+GGG | - | chr3.4:87728042-87728061 | MS.gene013262:CDS | 45.0% | |
| GGAAGAGATTGAGAAAGAGC+GGG | - | chr3.4:87728324-87728343 | MS.gene013262:intron | 45.0% | |
| GGAGAAGAAGCTAGCGAAAA+TGG | - | chr3.4:87727766-87727785 | MS.gene013262:intron | 45.0% | |
| GGCACTAATGTCTAAGAGAG+CGG | + | chr3.4:87726562-87726581 | None:intergenic | 45.0% | |
| GGCCATGAGTCATAATGCTT+TGG | + | chr3.4:87727527-87727546 | None:intergenic | 45.0% | |
| GGTGCTCAAATCCCATTCAA+TGG | + | chr3.4:87727255-87727274 | None:intergenic | 45.0% | |
| GTGGAAAGTTACTGAGCTTG+AGG | - | chr3.4:87727091-87727110 | MS.gene013262:CDS | 45.0% | |
| GTTGAAGTCCCTTGCAACAT+TGG | - | chr3.4:87728817-87728836 | MS.gene013262:intron | 45.0% | |
| TAATGGAGAGAGGCTATTGG+TGG | - | chr3.4:87727451-87727470 | MS.gene013262:CDS | 45.0% | |
| TACTACTCGACGTCAGACTT+AGG | - | chr3.4:87726196-87726215 | MS.gene013262:CDS | 45.0% | |
| TATGCGTAAATTCGGAGGCA+GGG | - | chr3.4:87727484-87727503 | MS.gene013262:CDS | 45.0% | |
| TGCAGATAAACTCGAGCTAG+AGG | - | chr3.4:87728072-87728091 | MS.gene013262:CDS | 45.0% | |
| TGCTGCAAAACAGCAGAATG+CGG | - | chr3.4:87726920-87726939 | MS.gene013262:CDS | 45.0% | |
| TGCTTTCTCTTTCTGCAGCT+TGG | + | chr3.4:87727277-87727296 | None:intergenic | 45.0% | |
| TGGAGATGGAACAGTTTGAG+TGG | + | chr3.4:87726466-87726485 | None:intergenic | 45.0% | |
| TGGCATATACCTGTACAGCA+CGG | + | chr3.4:87726446-87726465 | None:intergenic | 45.0% | |
| TGGCGAGTTAATGTTCAAGC+AGG | - | chr3.4:87728462-87728481 | MS.gene013262:intron | 45.0% | |
| TGGGGTTATGTGAATTCCCA+GGG | - | chr3.4:87725725-87725744 | MS.gene013262:CDS | 45.0% | |
| TTGGGGTTATGTGAATTCCC+AGG | - | chr3.4:87725724-87725743 | MS.gene013262:CDS | 45.0% | |
| TTTATCCAGTGAGAAAGCCG+AGG | - | chr3.4:87726683-87726702 | MS.gene013262:CDS | 45.0% | |
| ! | AAGCAGCTCGAGGTATTACA+AGG | - | chr3.4:87727833-87727852 | MS.gene013262:intron | 45.0% |
| ! | ATGTTTTCTCCGTGCTGTAC+AGG | - | chr3.4:87726434-87726453 | MS.gene013262:CDS | 45.0% |
| ! | GTATGCTGAAGTGGAAGCAT+TGG | - | chr3.4:87727724-87727743 | MS.gene013262:intron | 45.0% |
| ! | TCGGAAATGACTTCTGGAGA+TGG | + | chr3.4:87726480-87726499 | None:intergenic | 45.0% |
| ! | TGAACTACAATCTCGACTCG+AGG | - | chr3.4:87727214-87727233 | MS.gene013262:CDS | 45.0% |
| ! | TGTCCGGTGGAGTATTTAAG+TGG | + | chr3.4:87726165-87726184 | None:intergenic | 45.0% |
| !! | GCATGTCAGATAATGGAGAG+AGG | - | chr3.4:87727441-87727460 | MS.gene013262:CDS | 45.0% |
| !! | GTAATACCTCGAGCTGCTTT+TGG | + | chr3.4:87727832-87727851 | None:intergenic | 45.0% |
| !! | ATTAATATTTGATTATATTT+AGG | - | chr3.4:87726849-87726868 | MS.gene013262:CDS | 5.0% |
| ACTGAGAGCTGCTCAAACTG+AGG | - | chr3.4:87727985-87728004 | MS.gene013262:CDS | 50.0% | |
| AGACCAACCAAATGTTGGCC+AGG | - | chr3.4:87727688-87727707 | MS.gene013262:intron | 50.0% | |
| CAGCAAGCCTTTCCATTTCG+AGG | + | chr3.4:87727649-87727668 | None:intergenic | 50.0% | |
| CATACACTGTGTCTGTTCCC+TGG | + | chr3.4:87727709-87727728 | None:intergenic | 50.0% | |
| CATTCTCTGTCAACGATCGC+AGG | - | chr3.4:87727375-87727394 | MS.gene013262:CDS | 50.0% | |
| CCAAAAGAGACGAGCTTGAG+TGG | - | chr3.4:87727072-87727091 | MS.gene013262:CDS | 50.0% | |
| CCAACTCTGCTTCCTTTACC+CGG | + | chr3.4:87727859-87727878 | None:intergenic | 50.0% | |
| CGAGTGCCAAAAACAGCTCA+AGG | - | chr3.4:87728105-87728124 | MS.gene013262:intron | 50.0% | |
| CTCTTCATTTGACGCAGCCT+CGG | + | chr3.4:87726499-87726518 | None:intergenic | 50.0% | |
| CTGCTGTCCTAGAGATTCGA+TGG | + | chr3.4:87728798-87728817 | None:intergenic | 50.0% | |
| GAACAGCTAGCTACCTACCT+AGG | + | chr3.4:87725697-87725716 | None:intergenic | 50.0% | |
| GACCAACCAAATGTTGGCCA+GGG | - | chr3.4:87727689-87727708 | MS.gene013262:intron | 50.0% | |
| GAGCCACGACATTCAATCTC+TGG | + | chr3.4:87727349-87727368 | None:intergenic | 50.0% | |
| GATAAAGGAAGCGGAGTTGG+AGG | - | chr3.4:87728141-87728160 | MS.gene013262:intron | 50.0% | |
| GCAGGAGAAGGAACTAGCAT+TGG | - | chr3.4:87728742-87728761 | MS.gene013262:intron | 50.0% | |
| GCTATGAAGCACAAACACGG+AGG | + | chr3.4:87726083-87726102 | None:intergenic | 50.0% | |
| GGAGGCAGGGAGATAAATGA+AGG | - | chr3.4:87727497-87727516 | MS.gene013262:CDS | 50.0% | |
| GGTAAAGGAAGCAGAGTTGG+AGG | - | chr3.4:87727859-87727878 | MS.gene013262:intron | 50.0% | |
| GGTATTACAAGGCCGGGTAA+AGG | - | chr3.4:87727844-87727863 | MS.gene013262:intron | 50.0% | |
| GTGCCAGAGATTGAATGTCG+TGG | - | chr3.4:87727343-87727362 | MS.gene013262:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | - | chr3.4:87726612-87726631 | MS.gene013262:CDS | 50.0% | |
| TCGGATAAAGGAAGCGGAGT+TGG | - | chr3.4:87728138-87728157 | MS.gene013262:intron | 50.0% | |
| TCTGTTCCCTGGCCAACATT+TGG | + | chr3.4:87727698-87727717 | None:intergenic | 50.0% | |
| TGATCTTCTGCAGAGGCTTC+AGG | - | chr3.4:87727160-87727179 | MS.gene013262:CDS | 50.0% | |
| TGGAACGAAGGAGTTGGATG+TGG | - | chr3.4:87725518-87725537 | MS.gene013262:CDS | 50.0% | |
| TTCCCTGGCCAACATTTGGT+TGG | + | chr3.4:87727694-87727713 | None:intergenic | 50.0% | |
| ! | AGCTCGAGGTATTACAAGGC+CGG | - | chr3.4:87727837-87727856 | MS.gene013262:intron | 50.0% |
| ! | CCACTCAAGCTCGTCTCTTT+TGG | + | chr3.4:87727075-87727094 | None:intergenic | 50.0% |
| ! | TATGACTATGAGGTGTCCGG+TGG | + | chr3.4:87726178-87726197 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTGTGATGTC+TGG | - | chr3.4:87725966-87725985 | MS.gene013262:intron | 50.0% |
| !! | ATCACATGTGTCGGTGCTGT+AGG | + | chr3.4:87726005-87726024 | None:intergenic | 50.0% |
| !! | CTGCATAGGGAAGGTGTTGA+TGG | - | chr3.4:87728442-87728461 | MS.gene013262:intron | 50.0% |
| !! | GCCAATACGGTTTTGTGCAG+TGG | + | chr3.4:87727594-87727613 | None:intergenic | 50.0% |
| !! | GGTTGGTCTGATGCAGTATC+TGG | + | chr3.4:87727677-87727696 | None:intergenic | 50.0% |
| AACTGCTCACCGCCATCTTG+GGG | + | chr3.4:87728905-87728924 | None:intergenic | 55.0% | |
| AGAGGCTTCAGGATGTGGAG+AGG | - | chr3.4:87727171-87727190 | MS.gene013262:CDS | 55.0% | |
| ATACAGGAAGGAGGGGTCCT+AGG | - | chr3.4:87725677-87725696 | MS.gene013262:CDS | 55.0% | |
| CAACTGCTCACCGCCATCTT+GGG | + | chr3.4:87728906-87728925 | None:intergenic | 55.0% | |
| CAATGCCTCGGCTTTCTCAC+TGG | + | chr3.4:87726691-87726710 | None:intergenic | 55.0% | |
| CAGTGAGAAAGCCGAGGCAT+TGG | - | chr3.4:87726689-87726708 | MS.gene013262:CDS | 55.0% | |
| CCGGGTAAAGGAAGCAGAGT+TGG | - | chr3.4:87727856-87727875 | MS.gene013262:intron | 55.0% | |
| CGAGGCTGCGTCAAATGAAG+AGG | - | chr3.4:87726497-87726516 | MS.gene013262:CDS | 55.0% | |
| GAGAGCTGCTCAAACTGAGG+CGG | - | chr3.4:87727988-87728007 | MS.gene013262:CDS | 55.0% | |
| GAGGCTTCAGGATGTGGAGA+GGG | - | chr3.4:87727172-87727191 | MS.gene013262:CDS | 55.0% | |
| GCAGCCTCGGAAATGACTTC+TGG | + | chr3.4:87726486-87726505 | None:intergenic | 55.0% | |
| TCAACTGCTCACCGCCATCT+TGG | + | chr3.4:87728907-87728926 | None:intergenic | 55.0% | |
| TCTGCAGAGGCTTCAGGATG+TGG | - | chr3.4:87727166-87727185 | MS.gene013262:CDS | 55.0% | |
| ! | GCTCGAGGTATTACAAGGCC+GGG | - | chr3.4:87727838-87727857 | MS.gene013262:intron | 55.0% |
| ACAACCCCAGCTCCCCAAGA+TGG | - | chr3.4:87728890-87728909 | MS.gene013262:intron | 60.0% | |
| AGGAAGGAGGGGTCCTAGGT+AGG | - | chr3.4:87725681-87725700 | MS.gene013262:CDS | 60.0% | |
| CGAGTGCCAAAAGCAGCTCG+AGG | - | chr3.4:87727823-87727842 | MS.gene013262:intron | 60.0% | |
| GAAGCACAAACACGGAGGCC+AGG | + | chr3.4:87726078-87726097 | None:intergenic | 60.0% | |
| ACCCCAGCTCCCCAAGATGG+CGG | - | chr3.4:87728893-87728912 | MS.gene013262:intron | 65.0% | |
| ACCGCCATCTTGGGGAGCTG+GGG | + | chr3.4:87728897-87728916 | None:intergenic | 65.0% | |
| CACCGCCATCTTGGGGAGCT+GGG | + | chr3.4:87728898-87728917 | None:intergenic | 65.0% | |
| TCACCGCCATCTTGGGGAGC+TGG | + | chr3.4:87728899-87728918 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87725517 | 87729030 | 87725517 | ID=MS.gene013262 |
| chr3.4 | mRNA | 87725517 | 87729030 | 87725517 | ID=MS.gene013262.t1;Parent=MS.gene013262 |
| chr3.4 | exon | 87728914 | 87729030 | 87728914 | ID=MS.gene013262.t1.exon1;Parent=MS.gene013262.t1 |
| chr3.4 | CDS | 87728914 | 87729030 | 87728914 | ID=cds.MS.gene013262.t1;Parent=MS.gene013262.t1 |
| chr3.4 | exon | 87727914 | 87728091 | 87727914 | ID=MS.gene013262.t1.exon2;Parent=MS.gene013262.t1 |
| chr3.4 | CDS | 87727914 | 87728091 | 87727914 | ID=cds.MS.gene013262.t1;Parent=MS.gene013262.t1 |
| chr3.4 | exon | 87726064 | 87727676 | 87726064 | ID=MS.gene013262.t1.exon3;Parent=MS.gene013262.t1 |
| chr3.4 | CDS | 87726064 | 87727676 | 87726064 | ID=cds.MS.gene013262.t1;Parent=MS.gene013262.t1 |
| chr3.4 | exon | 87725517 | 87725801 | 87725517 | ID=MS.gene013262.t1.exon4;Parent=MS.gene013262.t1 |
| chr3.4 | CDS | 87725517 | 87725801 | 87725517 | ID=cds.MS.gene013262.t1;Parent=MS.gene013262.t1 |
| Gene Sequence |
| Protein sequence |
