AlfalfaGEDB | MS.gene01146

M. sativa cultivar XinJiangDaYe / MS.gene01146

KEGG: K13416
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01146.t1	XP_003593158.1	92.4	616	47	0	1	616	5	620	5.10E-261	910.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01146.t1	Q94F62	77.4	605	135	2	14	616	11	615	5.3e-206	718.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01146.t1	E2IXG3	92.4	616	47	0	1	616	5	620	3.7e-261	910.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene01146	MS.gene40942	PPI
MS.gene01146	MS.gene013262	PPI
MS.gene01146	MS.gene70169	PPI
MS.gene01146	MS.gene73663	PPI
MS.gene01146	MS.gene49718	PPI
MS.gene01146	MS.gene06347	PPI
MS.gene01146	MS.gene030571	PPI
MS.gene01146	MS.gene049233	PPI
MS.gene030570	MS.gene01146	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene01146.t1	MTR_2g008390	93.669	616	39	0	1	616	5	620	1112
MS.gene01146.t1	MTR_2g008400	81.153	642	95	5	1	616	1	642	980
MS.gene01146.t1	MTR_2g008380	85.057	609	88	3	10	616	4	611	971
MS.gene01146.t1	MTR_2g008360	83.845	619	97	2	1	616	1	619	961
MS.gene01146.t1	MTR_2g008370	77.281	581	128	4	1	580	1	578	829
MS.gene01146.t1	MTR_1g097160	72.231	605	151	4	26	616	26	627	815
MS.gene01146.t1	MTR_5g033820	54.077	601	256	6	29	616	32	625	615
MS.gene01146.t1	MTR_7g018200	53.125	608	267	9	21	616	25	626	601
MS.gene01146.t1	MTR_6g016495	53.213	607	252	10	29	616	32	625	587
MS.gene01146.t1	MTR_0049s0070	49.287	631	295	7	1	616	1	621	580

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene01146.t1	AT4G33430	76.403	606	141	2	13	616	10	615	898
MS.gene01146.t1	AT4G33430	70.904	653	141	3	13	616	10	662	876
MS.gene01146.t1	AT2G13790	72.651	596	158	4	25	616	26	620	841
MS.gene01146.t1	AT1G71830	71.587	630	152	6	7	616	3	625	836
MS.gene01146.t1	AT1G34210	72.066	605	152	4	26	616	27	628	819
MS.gene01146.t1	AT1G34210	72.066	605	152	4	26	616	27	628	819
MS.gene01146.t1	AT2G13800	65.579	613	191	6	8	616	5	601	754
MS.gene01146.t1	AT2G13800	65.579	613	191	6	8	616	5	601	754
MS.gene01146.t1	AT2G13800	68.612	497	141	3	120	616	3	484	648
MS.gene01146.t1	AT2G13800	68.612	497	141	3	120	616	3	484	648

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Find 135 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAAAGATCAAAGGG+TGG	0.682715	2.1:-74207197	MS.gene01146:CDS
AAAGTATGTCATACAGGAAG+CGG	0.550795	2.1:+74209761	None:intergenic
AACATTGTTAGGATCATTTA+AGG	0.198667	2.1:+74210261	None:intergenic
AACGAAAACATTATAGGTAG+AGG	0.521016	2.1:-74207284	MS.gene01146:CDS
AAGAGGAAAGATCAAAGGGT+GGG	0.595491	2.1:-74207196	MS.gene01146:CDS
AATACTGGAGCTATTGCTGG+AGG	0.692887	2.1:-74207587	MS.gene01146:CDS
AATCTTCAAAGGGATCATCT+AGG	0.542100	2.1:+74205697	None:intergenic
AATGAAAATGAACCATCCAC+TGG	0.537243	2.1:+74208516	None:intergenic
AATGCTAGAAGGCCATGGTT+TGG	0.482545	2.1:-74205854	MS.gene01146:CDS
ACACTTCCATTAGCCATTAA+AGG	0.221959	2.1:+74207065	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGAAGAAACTTCAAG+CGG	+	chr2.1:74207613-74207632	None:intergenic	30.0%
AACCAGAAATAGATTAGACA+TGG	+	chr2.1:74209901-74209920	None:intergenic	30.0%
AACGAAAACATTATAGGTAG+AGG	-	chr2.1:74209518-74209537	MS.gene01146:intron	30.0%
AATAAAGCTACTTACCAAGA+TGG	-	chr2.1:74207363-74207382	MS.gene01146:CDS	30.0%
AATCCCCTTTAATGCAAAAA+AGG	+	chr2.1:74207873-74207892	None:intergenic	30.0%
AATTAATGTAGGTAGGTGAA+AGG	+	chr2.1:74208856-74208875	None:intergenic	30.0%
ACAAAGATTCATAAAACCAC+AGG	+	chr2.1:74206669-74206688	None:intergenic	30.0%
ACATCACGATGAATAATCTT+AGG	+	chr2.1:74210219-74210238	None:intergenic	30.0%
ACTTAAAGAGGAAAGATCAA+AGG	-	chr2.1:74209601-74209620	MS.gene01146:intron	30.0%
AGAAAATTCAGATTTGTGCA+AGG	+	chr2.1:74206869-74206888	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	74205711	74211113	74205711	ID=MS.gene01146
chr2.1	mRNA	74205711	74211113	74205711	ID=MS.gene01146.t1;Parent=MS.gene01146
chr2.1	exon	74211020	74211113	74211020	ID=MS.gene01146.t1.exon1;Parent=MS.gene01146.t1
chr2.1	CDS	74211020	74211113	74211020	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74210181	74210310	74210181	ID=MS.gene01146.t1.exon2;Parent=MS.gene01146.t1
chr2.1	CDS	74210181	74210310	74210181	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74210009	74210080	74210009	ID=MS.gene01146.t1.exon3;Parent=MS.gene01146.t1
chr2.1	CDS	74210009	74210080	74210009	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74209775	74209918	74209775	ID=MS.gene01146.t1.exon4;Parent=MS.gene01146.t1
chr2.1	CDS	74209775	74209918	74209775	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74208710	74208781	74208710	ID=MS.gene01146.t1.exon5;Parent=MS.gene01146.t1
chr2.1	CDS	74208710	74208781	74208710	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74208501	74208572	74208501	ID=MS.gene01146.t1.exon6;Parent=MS.gene01146.t1
chr2.1	CDS	74208501	74208572	74208501	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74208336	74208412	74208336	ID=MS.gene01146.t1.exon7;Parent=MS.gene01146.t1
chr2.1	CDS	74208336	74208412	74208336	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74207489	74207617	74207489	ID=MS.gene01146.t1.exon8;Parent=MS.gene01146.t1
chr2.1	CDS	74207489	74207617	74207489	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74207048	74207389	74207048	ID=MS.gene01146.t1.exon9;Parent=MS.gene01146.t1
chr2.1	CDS	74207048	74207389	74207048	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74206312	74206706	74206312	ID=MS.gene01146.t1.exon10;Parent=MS.gene01146.t1
chr2.1	CDS	74206312	74206706	74206312	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1
chr2.1	exon	74205711	74206034	74205711	ID=MS.gene01146.t1.exon11;Parent=MS.gene01146.t1
chr2.1	CDS	74205711	74206034	74205711	ID=cds.MS.gene01146.t1;Parent=MS.gene01146.t1

Gene Sequence

>MS.gene01146

ATGCAGCAAGTGACTTCATCTTCTACAGCTTCCTTTCTTTTTTTGGCTATTTTGGTGCTTCATTTGCTGCTTAAAGCTTCTTCCAATGAAGAAAGTAAGTGGTTATTTTAATTGTTTCATAAATCTTTCTATCTGTTAATTTGGTTAAAATTCACCAAATTTTGATATACTAGGTTGCCCTTTAGCCTTTTAATGTTACTGATCATATGTTGTGTTTGTTTGGTTTCACAATGGGAACTTCAGAACTTGAGTTTGACCAGATTTTGTTATGTTTAACTTTTATTTTGGGAATCAGTTTTGAGCTTAAGTAATTATTTTTAGCTTTCACATTTTAACTCTTTGCAAATTTTCATACACATGTTAAACTTAAAACTACTGTTGGTAATTATACGCTCAAAATCAATTTTGCGCATCCAAGTATAAACCACTTTACATTTAACTCACTTTTAACTAAAATCAATTATTGAAGAATAAAACCGGAGATGAATACATAATAGACTTTGGAGTAGCTTTTGTAATATTTCAACCTAAATATTCTGTATCTGCTAATATTTTTGCTAGGAAGATAGGATCATATGATTGAAGAATTTTAGTAAATTTCAGATATAGTGATGGGTAGTTTCTTCAGTGCTTAGTCCCGAGCCTAGGCGATTCACGGATGAACAGAATTGGTGATGATAATACTTTGCGAAATAATCATAGGCTGGGTTGGACAGCCTATGCTGTATAGAAGAATTCACCTCCTCCCACTCATGTTAATATTAACGATGTTTGCAACTAAAGATTGCTTCTTTTTAGAACAGGTGATGCACTGAATGCATTCAAGAGCGCCTTAAATGATCCTAACAATGTTCTTCAAAGTTGGGATCCTACTCTTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAGTGGTGGTAGAGTAACCCGTGTGTAAGTCGTTATGTCATTTTTACCTGTGGTTTTATGAATCTTTGTCAATGTAATGAACTGTTTATTATTATTAATTTTTTTTTTTTTTGTATTTGGACAGTGATCTTGCAAATGAAAACCTTTCTGGTAATCTGGTTTCAAATCTTGGCGTTCTCTCAAATTTGGAGTATTTGTAAGTTGTGAATCAGATATGATATTGTTGATTGAGCAGATTAAGTTCAACCTTGCACAAATCTGAATTTTCTTCCCTTTTCAATGGAAGGGAACTTTATAATAATAAGATAACAGGAACAATCCCAGAAGAGCTAGGAAATTTGACAAACTTGGAGAGCTTGGATCTTTACTTGAACAATATAAGTGGTATCATACCGAATACATTGGGCAACCTTAAAAATCTCCGCTTCCTGTATGACATACTTTCGTTATTCTTATATCTTTGATCTGCAAAATTTATTTATGTTGATTTCAATTTTTTTCTATCTTTACCTTTGTTCAATATACTTTTTTGTGTGTTTTCCGATGCAAAATGAAGTAGATTTTGTACCCTCTTCAACATGACCATTACGCTTATAGCAAAGCTGCAATATACAAAAGTGCATGCTTAAAAAAGTAGTCCTATTTTCATTATCGCTGCTGCTGGTTATTATTATGTGATGCAATAGTGTGATTATATGCCAATTGAATGAAATATTTAAGGTATTTCTAATATTTAGTAAATAAATAAAGCTACTTACCAAGATGGCGGGATTGGGTCTTATGTCAAGATGAAATTTTATTTAGGGTCAACTAATATTGCAGTTTTCCTCCCTTGAATACGATGAAAGAAATCTTAACAGTATCTGTTACATGTTTTTTGATTAATTCAATCTCTCTCTCTCTCTCTCTCTCTCTATCAGAGATTTAACTAATTCAACGTAATAATTGTTTATTTATACACATACTAATGCACTGAGGGGGTGGTGAAGGCCGCTTGAAGTTTCTTCAAGTTTCTGATTTGACTGGTTTATAGTAAAGCTTGTTTTAGCATGGCTAAATCTGTTTTTTTAATCAATTAACCTCGATTAGATGTGATAATCCAACAATCTACCACTGCACATTTCAAAGAATTAAATTTTTGAGCTTGATGGTATTTCTAAAGGTCGGTTTATAATATCTGAAATATCTTATGATATATTGCGCCCAATTGTTTGTGTGTTCTTTCCATGCATATTTTCTTCTTTTCCTTTCCTTTTTTGCATTAAAGGGGATTTTCTCTACCTGATGTGTAAAAATTTATAATATGATTATCTTATTCATTCATTTACTCGAAACTAAAACTTAAAGGGGAGTTTTTATACATTTGATAACTAATTACCTATGATTTATTACTCTATTTTATCTATGTTGCGCTCCAAAATAGGCGTCTCAATAATAACAGCTTGACTGGAGTCATTCCCATTTCTTTGACAAATGTTACTACGCTGCAAGTTCTGTGAGTGTTGCTCCTTCATTTAGTTTTTCTATGAGTTATGGTCAAATTTTGTTGAAGAAATCAAAGTTGATTCTTATTTATACTAGAATCATATATTTCCATGTGTAAATTGACACAACGGCCATCTTGGAATACAGTGATGTCTCAGACAACAATCTAGAAGGGGACTTCCCAGTGGATGGTTCATTTTCATTATTTACGCCTATCAGGTCAGTGCAAATAATTATGTTCATATCTATGTCTTATTGTTGACAGATGGCCTGAAACTTTGCTAACTCAATGCGTTCCACTTTACAGTTATCGTAATAATCCTCGCATGAAACAACCAAAAAACATTCCAGCGCCTCTTTCTCCACCATCACCAGCTTCTTCAGGTTCATTGACTCTGTTTTTTGTTGACACTCATTTTTAAATTGTTAAAGAATTACTTGGACTGAAAGCTTTGATTCAGAATATTAACTCTAGCTTGCTCATAACTCTCTTGAATTGTAACCGACCTCAGCTTTTTTTAGAATGTTTAATTTTAAGACGGGATAAAAAAAAAAAAAAAAAAAACCAAACTAGGTATTTAAAATTAAGCAAGGGTTTTGTGAAAAATACATGACCTAAAATCCTGAGTTGTTAAGCAAGGGCTAAGGATGGGTTTTTTAGAGGTCATTAAAGTTAAGGCCATGTCAAACCAATATTCTATATTTCTTGTACAGTTGTACTTTGCCATTGTTTTGAAACTGACTCTAACCTTTCACCTACCTACATTAATTCTTAAGCCTCTTTTCCCCCAGAGAACAAAGAGAAAAGATTTGATAAATTATAGACATTGATTATATTGTTTTTTCCAAATGTTAATTCCGTAATTATGGAAAAGGATGGACTGATTTTTGAGAAGAGATCTCTGAAAGCAGACAACTTCAGTTCCTCTAGATTTTCTGCGTTTCCTCCATGCTTACATATTCTCGGTGTTGCTGTTCCCCATGGTTAAATTTAGAGGAAAACATAATTGTATTGAACTTAGAGATTTATGTTGCTAATCAATCACAGTCTATTTTTTAATAGAGTCATTGTTTCTAATTTAACTGTTAATCCTCTTTTCAGGTAGCACGAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTACACTTGTTTACTGGCAAAAAAGAAAACCACAGGATCATTTCTTTGACGTTCCTGGTTAGTTAAATAACAGAAAAGATTGTATAAATGCTGATAAACGCTGCATTTTAAATTTTTTACTTATGAACCAACATTTTGTCTGTCTTTTACCGGCAGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCCCTACGTGAGCTGATAGTAGCAACAGATAACTTCAGCAACGAAAACATTATAGGTAGAGGTGGATTCGCAAAGGTTTATAAAGGACGCTTAGCTGATGGCTCTCTTGTAGCAGTTAAAAGACTTAAAGAGGAAAGATCAAAGGGTGGGGAGCTACAATTTCAGACAGAAGTAGAAATGATCGGCATGGCTGTGCATCGTAATTTGCTTCGTCTTCATGGTTTTTGCGTGACATCTACTGAACGTTTGCTTGTGTATCCTTTAATGGCTAATGGAAGTGTAGCATCGTGTTTACGAGGTACCTCTATTAGTTCAGCATTTGAGTTGTTTTTATTTATTCATAATTTTCTTTCCTTCCTTGTGGATGAATATTCTCTCATATACCCTTTTCTGTTAGACATGCTATAAGTGTTGGTGTTCCATGTCTAATCTATTTCTGGTTAATTTTGGTTCATCATTGAAAACATAACAATTAGTATTTCCTAACTATTAGCTGGCAATTACGCAAATACAAACATGAAAATTATTAAGTAACCTCAAATTTTCAAATGCAAATGAATGCCTGCTATATTGTTAAATTCGAAAATTTGCAGTTTCATATTATAACTGCATCTATGCATATTGATTGTGTTGTTGTAGAACGTAATGACTCTCAACCGCCGCTTGATTGGCCAATGCGGAAGAATATTGCGCTAGGAGCTGCCAGGGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGATGAATTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAGGCTTATGGCTTACAAAGATACCCATGTCACTACTGCTGTTCAAGGTACACTTGGGCATATACCACCTGAGTACCTGTCAACCGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTACGATGCTTCTTGAACTGACAACTGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAGTGATGATGATGTGATGTTGCTTGATTGGGTAGGTTTTCAATTACCTTTTATACATGTCGTTAGTTTTTAGTTACATTCTGCCTCCAACACCGTAGCATGAATTAATCTCTTCATAATGTTCTATACGCTCAACATTCATTATTTAGTTTATCATTATCCCTTGCTGAATGATAAAAAAAGGTTAATAAATATTGTGCATGATGCAACACCGATTGCACTTGTGCATGTTAGAATCGGCCATAATGTAATGCCAACACCAATGACTAATCATTGTTGTCAACTGTCTGACATTATTTTGAATGCAGGTTAAAGGACTTCTCCAAGACAAGAAGTTGGAAACACTTGTTGATGCAGAGCTAAAGGGAAATTATGATGCTGAAGAGATAGAAAAGCTAATTCAAGTTGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTTGTTAGAATGCTAGAAGGCCATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAGGAGACGAACCGACGGGATTTTAACAACAACCACATGCATCACTTTAATACAAATTGGATAGTAGAAGACTCAGCTTCACATATCCAGCCAGATGAACTCTCAGGTCCTAGATGA

Protein sequence

>MS.gene01146.t1

MQQVTSSSTASFLFLAILVLHLLLKASSNEESDALNAFKSALNDPNNVLQSWDPTLVNPCTWFHVTCSGGRVTRVDLANENLSGNLVSNLGVLSNLEYLELYNNKITGTIPEELGNLTNLESLDLYLNNISGIIPNTLGNLKNLRFLRLNNNSLTGVIPISLTNVTTLQVLDVSDNNLEGDFPVDGSFSLFTPISYRNNPRMKQPKNIPAPLSPPSPASSGSTNTGAIAGGVAAAAALLFAAPAITLVYWQKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELIVATDNFSNENIIGRGGFAKVYKGRLADGSLVAVKRLKEERSKGGELQFQTEVEMIGMAVHRNLLRLHGFCVTSTERLLVYPLMANGSVASCLRERNDSQPPLDWPMRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFEAVVGDFGLARLMAYKDTHVTTAVQGTLGHIPPEYLSTGKSSEKTDVFGYGTMLLELTTGQRAFDLARLASDDDVMLLDWVKGLLQDKKLETLVDAELKGNYDAEEIEKLIQVALLCTQGSPMERPKMSEVVRMLEGHGLAEKWEQWQKEETNRRDFNNNHMHHFNTNWIVEDSASHIQPDELSGPR