Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93193.t1 | XP_024631287.1 | 92.4 | 856 | 39 | 2 | 1 | 855 | 1 | 831 | 1.10E-274 | 956.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93193.t1 | Q8LLE5 | 58.9 | 321 | 123 | 4 | 186 | 498 | 1 | 320 | 2.7e-83 | 311.6 |
| MS.gene93193.t1 | Q8LLE5 | 40.6 | 101 | 57 | 1 | 751 | 851 | 476 | 573 | 2.9e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93193.t1 | A0A072VGG6 | 92.3 | 856 | 39 | 3 | 1 | 855 | 1 | 830 | 5.9e-273 | 949.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49718 | MS.gene93193 | PPI |
| MS.gene70169 | MS.gene93193 | PPI |
| MS.gene013262 | MS.gene93193 | PPI |
| MS.gene030570 | MS.gene93193 | PPI |
| MS.gene06347 | MS.gene93193 | PPI |
| MS.gene030571 | MS.gene93193 | PPI |
| MS.gene049233 | MS.gene93193 | PPI |
| MS.gene40942 | MS.gene93193 | PPI |
| MS.gene73663 | MS.gene93193 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93193.t1 | MTR_1g030010 | 92.398 | 855 | 40 | 2 | 1 | 855 | 1 | 830 | 0.0 | 1507 |
| MS.gene93193.t1 | MTR_3g096990 | 40.366 | 711 | 352 | 14 | 151 | 815 | 39 | 723 | 2.81e-123 | 389 |
| MS.gene93193.t1 | MTR_8g094760 | 46.711 | 456 | 203 | 5 | 170 | 604 | 61 | 497 | 1.16e-110 | 352 |
| MS.gene93193.t1 | MTR_8g094760 | 33.333 | 294 | 115 | 10 | 596 | 852 | 377 | 626 | 2.12e-20 | 96.7 |
| MS.gene93193.t1 | MTR_8g094760 | 46.711 | 456 | 203 | 5 | 170 | 604 | 73 | 509 | 2.88e-110 | 352 |
| MS.gene93193.t1 | MTR_8g094760 | 36.150 | 213 | 76 | 6 | 663 | 852 | 463 | 638 | 2.97e-20 | 96.3 |
| MS.gene93193.t1 | MTR_3g096990 | 45.591 | 465 | 221 | 6 | 162 | 604 | 50 | 504 | 4.39e-98 | 319 |
| MS.gene93193.t1 | MTR_3g096990 | 31.379 | 290 | 141 | 9 | 547 | 815 | 377 | 629 | 1.39e-18 | 90.9 |
| MS.gene93193.t1 | MTR_3g113290 | 43.348 | 233 | 107 | 2 | 161 | 368 | 86 | 318 | 1.60e-44 | 174 |
| MS.gene93193.t1 | MTR_1g024095 | 41.880 | 234 | 109 | 2 | 161 | 368 | 67 | 299 | 4.69e-42 | 166 |
| MS.gene93193.t1 | MTR_1g024095 | 41.880 | 234 | 109 | 2 | 161 | 368 | 67 | 299 | 5.04e-42 | 166 |
| MS.gene93193.t1 | MTR_5g021810 | 35.268 | 224 | 120 | 2 | 170 | 368 | 77 | 300 | 2.75e-32 | 135 |
| MS.gene93193.t1 | MTR_5g021810 | 35.268 | 224 | 120 | 2 | 170 | 368 | 76 | 299 | 2.99e-32 | 134 |
| MS.gene93193.t1 | MTR_4g094848 | 37.500 | 216 | 110 | 4 | 170 | 360 | 40 | 255 | 2.39e-27 | 120 |
| MS.gene93193.t1 | MTR_5g016830 | 31.988 | 322 | 156 | 7 | 172 | 462 | 50 | 339 | 1.42e-26 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93193.t1 | AT1G21810 | 38.313 | 723 | 290 | 17 | 183 | 855 | 13 | 629 | 2.82e-109 | 349 |
| MS.gene93193.t1 | AT1G21810 | 38.313 | 723 | 290 | 17 | 183 | 855 | 13 | 629 | 2.82e-109 | 349 |
| MS.gene93193.t1 | AT3G05270 | 39.423 | 624 | 302 | 12 | 158 | 761 | 48 | 615 | 3.36e-92 | 303 |
| MS.gene93193.t1 | AT3G05270 | 48.000 | 75 | 28 | 2 | 3 | 76 | 2 | 66 | 6.00e-13 | 73.2 |
| MS.gene93193.t1 | AT3G05270 | 39.423 | 624 | 302 | 12 | 158 | 761 | 48 | 615 | 3.36e-92 | 303 |
| MS.gene93193.t1 | AT3G05270 | 48.000 | 75 | 28 | 2 | 3 | 76 | 2 | 66 | 6.00e-13 | 73.2 |
| MS.gene93193.t1 | AT3G05270 | 39.423 | 624 | 302 | 12 | 158 | 761 | 48 | 615 | 3.36e-92 | 303 |
| MS.gene93193.t1 | AT3G05270 | 48.000 | 75 | 28 | 2 | 3 | 76 | 2 | 66 | 6.00e-13 | 73.2 |
| MS.gene93193.t1 | AT1G77580 | 48.688 | 343 | 124 | 6 | 163 | 499 | 22 | 318 | 2.41e-83 | 280 |
| MS.gene93193.t1 | AT1G77580 | 48.980 | 343 | 123 | 7 | 163 | 499 | 22 | 318 | 4.75e-82 | 280 |
| MS.gene93193.t1 | AT1G77580 | 48.980 | 343 | 123 | 7 | 163 | 499 | 56 | 352 | 6.69e-82 | 280 |
| MS.gene93193.t1 | AT1G77580 | 48.980 | 343 | 123 | 7 | 163 | 499 | 56 | 352 | 6.69e-82 | 280 |
| MS.gene93193.t1 | AT1G21810 | 35.126 | 595 | 247 | 16 | 311 | 855 | 1 | 506 | 7.57e-67 | 231 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G19835 | 38.636 | 264 | 130 | 4 | 165 | 397 | 61 | 323 | 4.14e-42 | 166 |
| MS.gene93193.t1 | AT1G47900 | 34.354 | 294 | 163 | 4 | 134 | 397 | 78 | 371 | 4.87e-38 | 154 |
| MS.gene93193.t1 | AT1G47900 | 34.354 | 294 | 163 | 4 | 134 | 397 | 78 | 371 | 4.97e-38 | 154 |
| MS.gene93193.t1 | AT1G47900 | 34.354 | 294 | 163 | 4 | 134 | 397 | 78 | 371 | 4.97e-38 | 154 |
| MS.gene93193.t1 | AT4G36120 | 38.667 | 225 | 111 | 2 | 170 | 368 | 76 | 299 | 3.20e-36 | 148 |
| MS.gene93193.t1 | AT4G36120 | 38.667 | 225 | 111 | 2 | 170 | 368 | 76 | 299 | 3.20e-36 | 148 |
| MS.gene93193.t1 | AT2G23360 | 36.967 | 211 | 108 | 2 | 183 | 368 | 42 | 252 | 4.77e-24 | 109 |
Find 174 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTTGCTTTGATTTGT+AGG | 0.158511 | 1.3:+15929682 | None:intergenic |
| CTGGCATTCGGCAAGCTTTC+CGG | 0.169197 | 1.3:+15928887 | None:intergenic |
| CCAGAAAACAATAGCATCTT+TGG | 0.227504 | 1.3:-15928868 | MS.gene93193:CDS |
| AGCTTTCCTCATATTTGTTC+AGG | 0.245451 | 1.3:+15928661 | None:intergenic |
| CATTGCAATTTCTTCAGATA+TGG | 0.255106 | 1.3:+15929256 | None:intergenic |
| CAGCAAATGGATGAACTAAA+AGG | 0.264463 | 1.3:-15929845 | MS.gene93193:CDS |
| AAAGGAGGCAGTTCAGAAAT+TGG | 0.278157 | 1.3:-15929732 | MS.gene93193:CDS |
| AGAGAGACTCCACTTCTTCT+AGG | 0.279649 | 1.3:-15928710 | MS.gene93193:CDS |
| TTCTTTGTCAACGCATTTAT+CGG | 0.285448 | 1.3:+15929901 | None:intergenic |
| CTGTTTAACCAAGTCTTCTT+TGG | 0.288311 | 1.3:+15931434 | None:intergenic |
| CCTACTACATGCATCATAAA+TGG | 0.290764 | 1.3:-15931732 | MS.gene93193:CDS |
| TTGAAGTATCTAATTTGTTC+TGG | 0.297055 | 1.3:+15930488 | None:intergenic |
| TTCTCAGAACTGGCGTGATT+TGG | 0.303370 | 1.3:+15928597 | None:intergenic |
| TCATCAGAGGTAGATGAAAA+TGG | 0.339325 | 1.3:-15931705 | MS.gene93193:CDS |
| ATCACGTTCAACAGAAGATT+TGG | 0.341973 | 1.3:+15930462 | None:intergenic |
| TGCAATGAAGTGTAGGGAAT+TGG | 0.368718 | 1.3:-15929240 | MS.gene93193:CDS |
| TACTAGCTGTCTCAGCTGCT+TGG | 0.369218 | 1.3:+15930329 | None:intergenic |
| CAGAAAACAATAGCATCTTT+GGG | 0.371111 | 1.3:-15928867 | MS.gene93193:CDS |
| GGAGTCACATCTTCAGTTAA+AGG | 0.375808 | 1.3:-15929750 | MS.gene93193:CDS |
| CCGGGTGAAGCTGAGAGTTC+AGG | 0.379981 | 1.3:-15932586 | MS.gene93193:CDS |
| TCATCTAGATGGAGCACTTA+AGG | 0.382656 | 1.3:-15930635 | MS.gene93193:CDS |
| ACTAGCTGTCTCAGCTGCTT+GGG | 0.387288 | 1.3:+15930330 | None:intergenic |
| GAAGAAGTGGAGTCTCTCTT+AGG | 0.390406 | 1.3:+15928714 | None:intergenic |
| CCCGCATGAGCAATGATTGC+TGG | 0.393330 | 1.3:+15928777 | None:intergenic |
| AGCAGAGATTGTTAAGGAGA+GGG | 0.395136 | 1.3:-15929384 | MS.gene93193:CDS |
| GTTAGAAGCAGAGATTGTTA+AGG | 0.395902 | 1.3:-15929390 | MS.gene93193:CDS |
| AGCTTCACCCGGACTCTTCT+CGG | 0.405534 | 1.3:+15932597 | None:intergenic |
| GGTAGATGAAAATGGAGAAA+AGG | 0.409058 | 1.3:-15931697 | MS.gene93193:CDS |
| GCTTTCCGGCCGCGAGTGCT+AGG | 0.411337 | 1.3:+15928901 | None:intergenic |
| AGGCCAACAGCTAGCTTGTA+TGG | 0.413438 | 1.3:-15929203 | MS.gene93193:CDS |
| TGCTTTCTAACTCTTTCTCC+AGG | 0.415864 | 1.3:+15929537 | None:intergenic |
| CTTAGAAGCAGAGGTTGAAA+AGG | 0.424596 | 1.3:-15929285 | MS.gene93193:CDS |
| GAATGCTAGCAGTGTCAATA+AGG | 0.424610 | 1.3:+15928808 | None:intergenic |
| GATAGAGTCACTCATCTAGA+TGG | 0.442078 | 1.3:-15930646 | MS.gene93193:CDS |
| TTCTAGCCGAATACCACTCT+TGG | 0.444679 | 1.3:+15928539 | None:intergenic |
| CGGATAAGAAGAGATGGTTA+TGG | 0.445207 | 1.3:-15932633 | MS.gene93193:CDS |
| GCTTTCCTCATATTTGTTCA+GGG | 0.445685 | 1.3:+15928662 | None:intergenic |
| AGTTCTGAGAAGGGTCGAAT+TGG | 0.445703 | 1.3:-15928585 | MS.gene93193:CDS |
| ATTAGAAGCCAACGTTGATA+AGG | 0.446707 | 1.3:-15929495 | MS.gene93193:CDS |
| TGAGAAGTATTCTGATGAAC+AGG | 0.447757 | 1.3:-15932545 | MS.gene93193:intron |
| GTATCAAAGGAAGCTTCTAA+TGG | 0.451590 | 1.3:-15931867 | MS.gene93193:CDS |
| AACCAAGTTGTTCCGACTCA+TGG | 0.454388 | 1.3:-15930099 | MS.gene93193:CDS |
| ATTAGAAGCAGAGGTTGATA+AGG | 0.454787 | 1.3:-15929600 | MS.gene93193:CDS |
| GAGCACTTAAGGAGTGTGTT+AGG | 0.454819 | 1.3:-15930624 | MS.gene93193:CDS |
| CGAAATTGCGGCCAAGTGTA+AGG | 0.456297 | 1.3:-15929351 | MS.gene93193:CDS |
| AAAAGGGAAGTTAGAGAAGG+TGG | 0.456647 | 1.3:-15929828 | MS.gene93193:CDS |
| GGTGTTGATGCAATTTCATC+GGG | 0.459416 | 1.3:+15931759 | None:intergenic |
| GGGGAATCAGCTGAAATCTC+TGG | 0.459529 | 1.3:-15928847 | MS.gene93193:CDS |
| AATTCGACCCTTCTCAGAAC+TGG | 0.460941 | 1.3:+15928587 | None:intergenic |
| TCAGCTCTTCCGATTGAACT+AGG | 0.465664 | 1.3:+15930383 | None:intergenic |
| AAAGTCTTCCGAGAAGAGTC+CGG | 0.465809 | 1.3:-15932605 | MS.gene93193:CDS |
| ATGGTTAGAGACAGAGAATA+TGG | 0.466296 | 1.3:-15930422 | MS.gene93193:CDS |
| TATTATTAACATACCTGCTA+TGG | 0.467238 | 1.3:+15931389 | None:intergenic |
| TCCTTTCAAACTCTTCCGCC+AGG | 0.469800 | 1.3:+15929327 | None:intergenic |
| AAGAAATTGCAATGAAGTGT+AGG | 0.469994 | 1.3:-15929247 | MS.gene93193:CDS |
| CGCGAACCAAGAGTGGTATT+CGG | 0.471935 | 1.3:-15928545 | MS.gene93193:CDS |
| AACTTGACACGGTCACTCTC+AGG | 0.474253 | 1.3:-15930684 | MS.gene93193:CDS |
| AAGCAGCTTTGTTGAGGAGT+TGG | 0.475100 | 1.3:-15929930 | MS.gene93193:CDS |
| AGAGTTTCTTCCTTTCCATT+CGG | 0.476674 | 1.3:+15931516 | None:intergenic |
| TGTTTGCTTAGGCTGGGAAA+AGG | 0.481268 | 1.3:-15930737 | MS.gene93193:intron |
| CTGCTTGCGTTCTTAGTCTC+GGG | 0.481931 | 1.3:+15929947 | None:intergenic |
| TTCTCTTAAAATAGATCTGA+TGG | 0.482089 | 1.3:-15930005 | MS.gene93193:CDS |
| GCTGCTTGCGTTCTTAGTCT+CGG | 0.482246 | 1.3:+15929946 | None:intergenic |
| GAAAGCAAATCGGCAATGCT+TGG | 0.488948 | 1.3:-15929521 | MS.gene93193:CDS |
| GGAAAAGAAGATCTAAATGA+AGG | 0.492153 | 1.3:-15931585 | MS.gene93193:CDS |
| TCTCCATACAAGCTAGCTGT+TGG | 0.492340 | 1.3:+15929200 | None:intergenic |
| ATATGCGTCAAACGGTTGAA+TGG | 0.492627 | 1.3:-15930441 | MS.gene93193:CDS |
| GCATGAGATCCTAGTTCAAT+CGG | 0.494988 | 1.3:-15930392 | MS.gene93193:CDS |
| AGGTGTTGATGCAATTTCAT+CGG | 0.499092 | 1.3:+15931758 | None:intergenic |
| TGCTTCTAATAAGTTGACCT+TGG | 0.499199 | 1.3:+15929613 | None:intergenic |
| TTCCGCCAGGTCCTTACACT+TGG | 0.500047 | 1.3:+15929340 | None:intergenic |
| ATTCTTGAATTGATCAAGCT+CGG | 0.500571 | 1.3:+15930060 | None:intergenic |
| GCAATGATTGCTGGACTTGT+GGG | 0.503806 | 1.3:+15928786 | None:intergenic |
| TGACATCATGACTCAGCAAA+TGG | 0.504440 | 1.3:-15929858 | MS.gene93193:CDS |
| AGCAAATGGATGAACTAAAA+GGG | 0.505397 | 1.3:-15929844 | MS.gene93193:CDS |
| AGCAGAGGTTGATAAGGAAA+GGG | 0.505776 | 1.3:-15929594 | MS.gene93193:CDS |
| AGACAGAGAATATGGCTCTC+AGG | 0.506015 | 1.3:-15930414 | MS.gene93193:CDS |
| AAACTCTAACTGACGGGTCG+AGG | 0.508304 | 1.3:-15931500 | MS.gene93193:CDS |
| AAGTCTTCCGAGAAGAGTCC+GGG | 0.509516 | 1.3:-15932604 | MS.gene93193:CDS |
| AGTCTGCCTCCATGCTCATT+AGG | 0.510576 | 1.3:+15929651 | None:intergenic |
| CCATTTATGATGCATGTAGT+AGG | 0.514775 | 1.3:+15931732 | None:intergenic |
| AAGCAGAGATTGTTAAGGAG+AGG | 0.518508 | 1.3:-15929385 | MS.gene93193:CDS |
| AACTTGATGGATCAGCTTGT+CGG | 0.521719 | 1.3:+15930026 | None:intergenic |
| GTAGAAGAAGACGATGAAAG+TGG | 0.521926 | 1.3:+15928636 | None:intergenic |
| ATGTGGAGGATGCATTCAAA+TGG | 0.526273 | 1.3:-15928747 | MS.gene93193:CDS |
| AGGTTGGCTGACGGTAGCTC+CGG | 0.528682 | 1.3:-15928690 | MS.gene93193:CDS |
| AAGCAGAGGTTGATAAGGAA+AGG | 0.529296 | 1.3:-15929595 | MS.gene93193:CDS |
| TGCATCCCTGAACAAATATG+AGG | 0.529869 | 1.3:-15928667 | MS.gene93193:CDS |
| AATGAAGTGTAGGGAATTGG+AGG | 0.530196 | 1.3:-15929237 | MS.gene93193:CDS |
| TGAAATTGCGATGAAGTGTA+AGG | 0.531007 | 1.3:-15929561 | MS.gene93193:CDS |
| ATGATGCATGTAGTAGGTAA+AGG | 0.532551 | 1.3:+15931738 | None:intergenic |
| TGTCAATGCCAAAGAAGACT+TGG | 0.532566 | 1.3:-15931442 | MS.gene93193:CDS |
| GAGGACCTAGCACTCGCGGC+CGG | 0.536253 | 1.3:-15928906 | MS.gene93193:CDS |
| GCTATTGTTAATATATCGAA+TGG | 0.539242 | 1.3:-15931606 | MS.gene93193:CDS |
| AGACTCCACTTCTTCTAGGT+TGG | 0.540766 | 1.3:-15928706 | MS.gene93193:CDS |
| AAGATCTAAATGAAGGGTCA+AGG | 0.540910 | 1.3:-15931578 | MS.gene93193:CDS |
| GAAAGAGTTAGAAAGCAAAT+CGG | 0.543732 | 1.3:-15929531 | MS.gene93193:CDS |
| TTTCTGAACCATTCATCTTG+AGG | 0.545654 | 1.3:+15930131 | None:intergenic |
| AGAAATTGCAATGAAGTGTA+GGG | 0.545960 | 1.3:-15929246 | MS.gene93193:CDS |
| TGAAAATCAGAACTGTTGAG+AGG | 0.547415 | 1.3:-15930363 | MS.gene93193:CDS |
| TGTGATATCCTCAAGATGAA+TGG | 0.547937 | 1.3:-15930139 | MS.gene93193:CDS |
| CCTGAACTCTCAGCTTCACC+CGG | 0.548091 | 1.3:+15932586 | None:intergenic |
| AGCAATGATTGCTGGACTTG+TGG | 0.550845 | 1.3:+15928785 | None:intergenic |
| ACCAAGTTGTTCCGACTCAT+GGG | 0.551428 | 1.3:-15930098 | MS.gene93193:CDS |
| GAGAGATTCGACGCAAAATG+AGG | 0.551921 | 1.3:+15930207 | None:intergenic |
| GCTAGAGAGCAAACGTGCAA+AGG | 0.554518 | 1.3:-15929420 | MS.gene93193:CDS |
| AAATCACGCCAGTTCTGAGA+AGG | 0.555578 | 1.3:-15928595 | MS.gene93193:CDS |
| AACTCTAACTGACGGGTCGA+GGG | 0.556177 | 1.3:-15931499 | MS.gene93193:CDS |
| GTCAGCCAACCTAGAAGAAG+TGG | 0.556265 | 1.3:+15928701 | None:intergenic |
| TTGAAAGCAGGAAGTATCAA+AGG | 0.558653 | 1.3:-15931880 | MS.gene93193:intron |
| CTCTCACACGCTATCTTCCA+AGG | 0.559134 | 1.3:-15929630 | MS.gene93193:CDS |
| ATATTTGTTCAGGGATGCAC+CGG | 0.560765 | 1.3:+15928671 | None:intergenic |
| GCTATTGTTAATATACCGAA+TGG | 0.561611 | 1.3:-15931531 | MS.gene93193:CDS |
| AGAAAATCGCCTAATGAGCA+TGG | 0.562266 | 1.3:-15929660 | MS.gene93193:CDS |
| CCAGCAATCATTGCTCATGC+GGG | 0.562517 | 1.3:-15928777 | MS.gene93193:CDS |
| GAAATCTCTGGCTACACTTG+AGG | 0.562631 | 1.3:-15928835 | MS.gene93193:CDS |
| GGTTGACTTCTTAGAAGCAG+AGG | 0.562756 | 1.3:-15929294 | MS.gene93193:CDS |
| GGAACAACTTGGTTCACACC+TGG | 0.564647 | 1.3:+15930108 | None:intergenic |
| TGCGATGAAGTGTAAGGACC+TGG | 0.564649 | 1.3:-15929555 | MS.gene93193:CDS |
| GAACGCAAGCAGCTTTGTTG+AGG | 0.566647 | 1.3:-15929936 | MS.gene93193:CDS |
| GAAAATCAGAACTGTTGAGA+GGG | 0.566708 | 1.3:-15930362 | MS.gene93193:CDS |
| AGCAGAGGTTGAAAAGGAGA+GGG | 0.567149 | 1.3:-15929279 | MS.gene93193:CDS |
| TATCTTCATTCTCCGACACT+CGG | 0.570213 | 1.3:+15930264 | None:intergenic |
| GTTGCTGAAGAAGCCATAGC+AGG | 0.570953 | 1.3:-15931402 | MS.gene93193:intron |
| CCGACACTCGGACTCAAGCT+TGG | 0.571160 | 1.3:+15930276 | None:intergenic |
| TGAAATTGCAATAAAATGTG+AGG | 0.573293 | 1.3:-15929456 | MS.gene93193:CDS |
| ATCATCAACATCTTCAGCAC+AGG | 0.574007 | 1.3:+15931806 | None:intergenic |
| AGATCTAAATGAAGGGTCAA+GGG | 0.576169 | 1.3:-15931577 | MS.gene93193:CDS |
| GCCCATGAGTCGGAACAACT+TGG | 0.576916 | 1.3:+15930097 | None:intergenic |
| AATAAAATGTGAGGGTCTAG+AGG | 0.579023 | 1.3:-15929447 | MS.gene93193:CDS |
| GAAAAGAAGATCTAAATGAA+GGG | 0.583779 | 1.3:-15931584 | MS.gene93193:CDS |
| ACCTGGCGGAAGAGTTTGAA+AGG | 0.585732 | 1.3:-15929328 | MS.gene93193:CDS |
| GCAATCATTGCTCATGCGGG+TGG | 0.586991 | 1.3:-15928774 | MS.gene93193:CDS |
| AGAATACTTCTCAGAATGAG+AGG | 0.588629 | 1.3:+15932555 | None:intergenic |
| AGGAAGAAACTCTAACTGAC+GGG | 0.589905 | 1.3:-15931506 | MS.gene93193:CDS |
| AATTGGAGGAAGAGATACTC+AGG | 0.589915 | 1.3:-15929223 | MS.gene93193:CDS |
| TGTTAATATACCGAATGGAA+AGG | 0.591354 | 1.3:-15931526 | MS.gene93193:CDS |
| GGTCAACTTATTAGAAGCAG+AGG | 0.594256 | 1.3:-15929609 | MS.gene93193:CDS |
| TAGCGCAGACGCCCATGAGT+CGG | 0.594519 | 1.3:+15930087 | None:intergenic |
| GTTTGAAAGGAAATGTGCAA+AGG | 0.595859 | 1.3:-15929315 | MS.gene93193:CDS |
| TGGAGAAAAGAAAATCAAGC+AGG | 0.595873 | 1.3:-15929183 | MS.gene93193:intron |
| AAGGAAGAAACTCTAACTGA+CGG | 0.597240 | 1.3:-15931507 | MS.gene93193:CDS |
| TGCGGCCAAGTGTAAGGACC+TGG | 0.601353 | 1.3:-15929345 | MS.gene93193:CDS |
| AAGCAGAGGTTGAAAAGGAG+AGG | 0.601507 | 1.3:-15929280 | MS.gene93193:CDS |
| AGATGAATGGTTCAGAAACC+AGG | 0.602181 | 1.3:-15930126 | MS.gene93193:CDS |
| GCAAAATGAGGATGAAGCAA+TGG | 0.602511 | 1.3:+15930219 | None:intergenic |
| TACTGAGAGGCTAACTGCGG+TGG | 0.603786 | 1.3:-15930164 | MS.gene93193:CDS |
| TCCAGCAATCATTGCTCATG+CGG | 0.605279 | 1.3:-15928778 | MS.gene93193:CDS |
| GTTCCTCTCCTTATCAACGT+TGG | 0.606642 | 1.3:+15929487 | None:intergenic |
| GAAATTGCAATAAAATGTGA+GGG | 0.607539 | 1.3:-15929455 | MS.gene93193:CDS |
| CAATGACGGATAAGAAGAGA+TGG | 0.607557 | 1.3:-15932639 | MS.gene93193:CDS |
| TGATCTAAATGACGGGTCAG+TGG | 0.607812 | 1.3:-15931652 | MS.gene93193:CDS |
| GAAAAGTGAAGTGTGTATTG+AGG | 0.618639 | 1.3:-15929771 | MS.gene93193:CDS |
| CATAAATGGTGGTTCATCAG+AGG | 0.620066 | 1.3:-15931718 | MS.gene93193:CDS |
| AGAACTGGCGTGATTTGGCA+AGG | 0.622883 | 1.3:+15928602 | None:intergenic |
| AAGCCAACGTTGATAAGGAG+AGG | 0.624711 | 1.3:-15929490 | MS.gene93193:CDS |
| ACTAAAAGGGAAGTTAGAGA+AGG | 0.626479 | 1.3:-15929831 | MS.gene93193:CDS |
| TCAGGAGGACCTAGCACTCG+CGG | 0.635445 | 1.3:-15928910 | MS.gene93193:intron |
| GGTTGCGTCAGACGAAATTG+CGG | 0.636623 | 1.3:-15929363 | MS.gene93193:CDS |
| AATCACGCCAGTTCTGAGAA+GGG | 0.639029 | 1.3:-15928594 | MS.gene93193:CDS |
| CTCATGCGGGTGGAGAGATG+TGG | 0.640653 | 1.3:-15928764 | MS.gene93193:CDS |
| ACTTCTTCTAGGTTGGCTGA+CGG | 0.645634 | 1.3:-15928699 | MS.gene93193:CDS |
| GTCACATCTTCAGTTAAAGG+AGG | 0.646496 | 1.3:-15929747 | MS.gene93193:CDS |
| GGAGGCAGTTCAGAAATTGG+AGG | 0.651234 | 1.3:-15929729 | MS.gene93193:CDS |
| TGAACGTGATATGCGTCAAA+CGG | 0.658530 | 1.3:-15930449 | MS.gene93193:CDS |
| CCAAGCTTGAGTCCGAGTGT+CGG | 0.665994 | 1.3:-15930276 | MS.gene93193:CDS |
| ACTACATGCATCATAAATGG+TGG | 0.667278 | 1.3:-15931729 | MS.gene93193:CDS |
| ATGCGGGTGGAGAGATGTGG+AGG | 0.668639 | 1.3:-15928761 | MS.gene93193:CDS |
| TTTAAAGAAGAAACTTGACA+CGG | 0.699579 | 1.3:-15930695 | MS.gene93193:CDS |
| GGCCAAGTGTAAGGACCTGG+CGG | 0.702161 | 1.3:-15929342 | MS.gene93193:CDS |
| GTCAGTCAGACAGTACTGAG+AGG | 0.704589 | 1.3:-15930177 | MS.gene93193:CDS |
| AGAAAACAATAGCATCTTTG+GGG | 0.712210 | 1.3:-15928866 | MS.gene93193:CDS |
| AAATCGCCTAATGAGCATGG+AGG | 0.744978 | 1.3:-15929657 | MS.gene93193:CDS |
| CAGTACTGAGAGGCTAACTG+CGG | 0.757500 | 1.3:-15930167 | MS.gene93193:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTATTTCATAAAAAT+AGG | - | chr1.3:15932064-15932083 | MS.gene93193:intron | 10.0% |
| !! | ATTTCATAAAAATAGGTTAT+TGG | - | chr1.3:15932071-15932090 | MS.gene93193:intron | 15.0% |
| !! | TATAATAATGACATTATAAG+AGG | + | chr1.3:15930284-15930303 | None:intergenic | 15.0% |
| !!! | GTTATATTTTGCTTTTATTT+TGG | - | chr1.3:15932137-15932156 | MS.gene93193:intron | 15.0% |
| !!! | TTAGAATTATTTTCTTACAT+TGG | - | chr1.3:15930310-15930329 | MS.gene93193:CDS | 15.0% |
| !!! | TTTTTCCTTATATTTGAAAT+CGG | - | chr1.3:15932175-15932194 | MS.gene93193:intron | 15.0% |
| !! | AATAACATCCAAGATATTAT+AGG | - | chr1.3:15932096-15932115 | MS.gene93193:intron | 20.0% |
| !! | AATTTCATTTATTTCACGTA+TGG | - | chr1.3:15928710-15928729 | MS.gene93193:CDS | 20.0% |
| !! | ATATCAAACCTATAATATCT+TGG | + | chr1.3:15932107-15932126 | None:intergenic | 20.0% |
| !! | TTATCATTAGAAATCAAACT+CGG | - | chr1.3:15929155-15929174 | MS.gene93193:intron | 20.0% |
| ! | AAAAAGATGATCTAAATGAC+GGG | - | chr1.3:15929511-15929530 | MS.gene93193:CDS | 25.0% |
| ! | AAAACAATATATCCAGGAAA+TGG | + | chr1.3:15930361-15930380 | None:intergenic | 25.0% |
| ! | AGGAAGAAGTTATTACTTAA+CGG | - | chr1.3:15929114-15929133 | MS.gene93193:intron | 25.0% |
| ! | ATATTGCTTTCTGTAATTCT+CGG | - | chr1.3:15929819-15929838 | MS.gene93193:CDS | 25.0% |
| ! | CAATTAAGATATCATCAGAT+TGG | + | chr1.3:15928790-15928809 | None:intergenic | 25.0% |
| ! | GAAAAAGATGATCTAAATGA+CGG | - | chr1.3:15929510-15929529 | MS.gene93193:CDS | 25.0% |
| ! | GAAAAGAAGATCTAAATGAA+GGG | - | chr1.3:15929586-15929605 | MS.gene93193:CDS | 25.0% |
| ! | GAAATTGCAATAAAATGTGA+GGG | - | chr1.3:15931715-15931734 | MS.gene93193:CDS | 25.0% |
| ! | GCTATTGTTAATATATCGAA+TGG | - | chr1.3:15929564-15929583 | MS.gene93193:CDS | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr1.3:15930190-15930209 | MS.gene93193:CDS | 25.0% |
| ! | TAGGTTTGATATCATTAACT+AGG | - | chr1.3:15932115-15932134 | MS.gene93193:intron | 25.0% |
| ! | TATTATTAACATACCTGCTA+TGG | + | chr1.3:15929784-15929803 | None:intergenic | 25.0% |
| ! | TGAAATTGCAATAAAATGTG+AGG | - | chr1.3:15931714-15931733 | MS.gene93193:CDS | 25.0% |
| ! | TTCTCTTAAAATAGATCTGA+TGG | - | chr1.3:15931165-15931184 | MS.gene93193:intron | 25.0% |
| ! | TTCTTCCGATTTCAAATATA+AGG | + | chr1.3:15932183-15932202 | None:intergenic | 25.0% |
| ! | TTTAAAGAAGAAACTTGACA+CGG | - | chr1.3:15930475-15930494 | MS.gene93193:CDS | 25.0% |
| ! | TTTCTATGAAGTATAGTTTG+AGG | + | chr1.3:15932048-15932067 | None:intergenic | 25.0% |
| !! | ATCCTTTTGAATATAGTTAC+TGG | - | chr1.3:15928866-15928885 | MS.gene93193:CDS | 25.0% |
| !! | TCCTTTTGAATATAGTTACT+GGG | - | chr1.3:15928867-15928886 | MS.gene93193:CDS | 25.0% |
| !!! | TATTGTTTGCTTTGATTTGT+AGG | + | chr1.3:15931491-15931510 | None:intergenic | 25.0% |
| !!! | TCTATTTTAAGAGAACTTGA+TGG | + | chr1.3:15931160-15931179 | None:intergenic | 25.0% |
| !!! | TTGAAGTATCTAATTTGTTC+TGG | + | chr1.3:15930685-15930704 | None:intergenic | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | + | chr1.3:15930230-15930249 | None:intergenic | 30.0% | |
| AAGAAATTGCAATGAAGTGT+AGG | - | chr1.3:15931923-15931942 | MS.gene93193:intron | 30.0% | |
| AATGACATTATAAGAGGTAG+AGG | + | chr1.3:15930278-15930297 | None:intergenic | 30.0% | |
| ACCCAGTAACTATATTCAAA+AGG | + | chr1.3:15928871-15928890 | None:intergenic | 30.0% | |
| ACGACACTAACTTAATAACT+TGG | + | chr1.3:15928762-15928781 | None:intergenic | 30.0% | |
| AGAAAACAATAGCATCTTTG+GGG | - | chr1.3:15932304-15932323 | MS.gene93193:intron | 30.0% | |
| AGAAATTGCAATGAAGTGTA+GGG | - | chr1.3:15931924-15931943 | MS.gene93193:intron | 30.0% | |
| AGCAAATGGATGAACTAAAA+GGG | - | chr1.3:15931326-15931345 | MS.gene93193:intron | 30.0% | |
| ATATCCAAGAAAGGATAGAA+TGG | + | chr1.3:15929878-15929897 | None:intergenic | 30.0% | |
| ATTACCATTCTATCCTTTCT+TGG | - | chr1.3:15929871-15929890 | MS.gene93193:CDS | 30.0% | |
| ATTCTTGAATTGATCAAGCT+CGG | + | chr1.3:15931113-15931132 | None:intergenic | 30.0% | |
| CAGAAAACAATAGCATCTTT+GGG | - | chr1.3:15932303-15932322 | MS.gene93193:intron | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | + | chr1.3:15930239-15930258 | None:intergenic | 30.0% | |
| CATTGCAATTTCTTCAGATA+TGG | + | chr1.3:15931917-15931936 | None:intergenic | 30.0% | |
| CTCAATAAGACTAGAACAAA+GGG | + | chr1.3:15930403-15930422 | None:intergenic | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | - | chr1.3:15930237-15930256 | MS.gene93193:CDS | 30.0% | |
| GAAAGAGTTAGAAAGCAAAT+CGG | - | chr1.3:15931639-15931658 | MS.gene93193:CDS | 30.0% | |
| GAAAGATTATCTGTGTTCTT+TGG | - | chr1.3:15928651-15928670 | MS.gene93193:CDS | 30.0% | |
| GCCTAAGCAAACAAATAAAA+AGG | + | chr1.3:15930426-15930445 | None:intergenic | 30.0% | |
| GCTATTGTTAATATACCGAA+TGG | - | chr1.3:15929639-15929658 | MS.gene93193:CDS | 30.0% | |
| GGAAAAGAAGATCTAAATGA+AGG | - | chr1.3:15929585-15929604 | MS.gene93193:CDS | 30.0% | |
| TGATATTACGATATTCACAC+AGG | + | chr1.3:15928978-15928997 | None:intergenic | 30.0% | |
| TGTCATTAAAACTTGAAAGC+AGG | - | chr1.3:15929278-15929297 | MS.gene93193:CDS | 30.0% | |
| TGTTAATATACCGAATGGAA+AGG | - | chr1.3:15929644-15929663 | MS.gene93193:CDS | 30.0% | |
| TTCTTTGTCAACGCATTTAT+CGG | + | chr1.3:15931272-15931291 | None:intergenic | 30.0% | |
| TTTATTTGTTTGCTTAGGCT+GGG | - | chr1.3:15930427-15930446 | MS.gene93193:CDS | 30.0% | |
| ! | CATTTGATCTTTTCTATGTC+AGG | - | chr1.3:15932242-15932261 | MS.gene93193:intron | 30.0% |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr1.3:15930247-15930266 | MS.gene93193:CDS | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr1.3:15930186-15930205 | None:intergenic | 30.0% |
| !! | GCCTTTTTATTTGTTTGCTT+AGG | - | chr1.3:15930422-15930441 | MS.gene93193:CDS | 30.0% |
| !! | TTTTATTTGTTTGCTTAGGC+TGG | - | chr1.3:15930426-15930445 | MS.gene93193:CDS | 30.0% |
| !!! | TTCCAATTCGTGAGTTTTTT+CGG | + | chr1.3:15930624-15930643 | None:intergenic | 30.0% |
| AACAAAGGGAGAAAAAGAAG+AGG | + | chr1.3:15930389-15930408 | None:intergenic | 35.0% | |
| AAGATCTAAATGAAGGGTCA+AGG | - | chr1.3:15929592-15929611 | MS.gene93193:CDS | 35.0% | |
| AAGGAAGAAACTCTAACTGA+CGG | - | chr1.3:15929663-15929682 | MS.gene93193:CDS | 35.0% | |
| AATAAAATGTGAGGGTCTAG+AGG | - | chr1.3:15931723-15931742 | MS.gene93193:CDS | 35.0% | |
| ACTAAAAGGGAAGTTAGAGA+AGG | - | chr1.3:15931339-15931358 | MS.gene93193:intron | 35.0% | |
| ACTACATGCATCATAAATGG+TGG | - | chr1.3:15929441-15929460 | MS.gene93193:CDS | 35.0% | |
| AGAATACTTCTCAGAATGAG+AGG | + | chr1.3:15928618-15928637 | None:intergenic | 35.0% | |
| AGAGTTTCTTCCTTTCCATT+CGG | + | chr1.3:15929657-15929676 | None:intergenic | 35.0% | |
| AGATCTAAATGAAGGGTCAA+GGG | - | chr1.3:15929593-15929612 | MS.gene93193:CDS | 35.0% | |
| AGCTTTCCTCATATTTGTTC+AGG | + | chr1.3:15932512-15932531 | None:intergenic | 35.0% | |
| AGGCATACCTAAGAAAAATG+CGG | + | chr1.3:15928958-15928977 | None:intergenic | 35.0% | |
| AGTTAGGTTAGGACTTAGAT+AGG | - | chr1.3:15930052-15930071 | MS.gene93193:CDS | 35.0% | |
| ATCACGTTCAACAGAAGATT+TGG | + | chr1.3:15930711-15930730 | None:intergenic | 35.0% | |
| ATCCTTTCTTGGATATGTGT+TGG | - | chr1.3:15929882-15929901 | MS.gene93193:CDS | 35.0% | |
| ATGAGGAGAAACTTAGGATT+TGG | + | chr1.3:15930026-15930045 | None:intergenic | 35.0% | |
| ATGATGCATGTAGTAGGTAA+AGG | + | chr1.3:15929435-15929454 | None:intergenic | 35.0% | |
| ATGGTTAGAGACAGAGAATA+TGG | - | chr1.3:15930748-15930767 | MS.gene93193:intron | 35.0% | |
| ATTAGAAGCCAACGTTGATA+AGG | - | chr1.3:15931675-15931694 | MS.gene93193:CDS | 35.0% | |
| CAGCAAATGGATGAACTAAA+AGG | - | chr1.3:15931325-15931344 | MS.gene93193:intron | 35.0% | |
| CCAGAAAACAATAGCATCTT+TGG | - | chr1.3:15932302-15932321 | MS.gene93193:intron | 35.0% | |
| CCATTTATGAGGAGAAACTT+AGG | + | chr1.3:15930032-15930051 | None:intergenic | 35.0% | |
| CCATTTATGATGCATGTAGT+AGG | + | chr1.3:15929441-15929460 | None:intergenic | 35.0% | |
| CCTAAGTTTCTCCTCATAAA+TGG | - | chr1.3:15930029-15930048 | MS.gene93193:CDS | 35.0% | |
| CCTACTACATGCATCATAAA+TGG | - | chr1.3:15929438-15929457 | MS.gene93193:CDS | 35.0% | |
| CTAACCTAACTCCATTTATG+AGG | + | chr1.3:15930043-15930062 | None:intergenic | 35.0% | |
| CTAGGAAAGATAACTAACTG+TGG | + | chr1.3:15929086-15929105 | None:intergenic | 35.0% | |
| CTCATAAATGGAGTTAGGTT+AGG | - | chr1.3:15930041-15930060 | MS.gene93193:CDS | 35.0% | |
| CTGTTTAACCAAGTCTTCTT+TGG | + | chr1.3:15929739-15929758 | None:intergenic | 35.0% | |
| GAAAAGAAAATCAAGCAGGT+TGG | - | chr1.3:15931991-15932010 | MS.gene93193:intron | 35.0% | |
| GAAAAGTGAAGTGTGTATTG+AGG | - | chr1.3:15931399-15931418 | MS.gene93193:intron | 35.0% | |
| GAAAATCAGAACTGTTGAGA+GGG | - | chr1.3:15930808-15930827 | MS.gene93193:intron | 35.0% | |
| GAAGAAAAGACCAAAAGAGT+TGG | - | chr1.3:15929024-15929043 | MS.gene93193:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | - | chr1.3:15930225-15930244 | MS.gene93193:CDS | 35.0% | |
| GATGGCAAAACAATATATCC+AGG | + | chr1.3:15930367-15930386 | None:intergenic | 35.0% | |
| GCTCAATAAGACTAGAACAA+AGG | + | chr1.3:15930404-15930423 | None:intergenic | 35.0% | |
| GCTTTCCTCATATTTGTTCA+GGG | + | chr1.3:15932511-15932530 | None:intergenic | 35.0% | |
| GGTAGATGAAAATGGAGAAA+AGG | - | chr1.3:15929473-15929492 | MS.gene93193:CDS | 35.0% | |
| GTATCAAAGGAAGCTTCTAA+TGG | - | chr1.3:15929303-15929322 | MS.gene93193:CDS | 35.0% | |
| GTTAGAAGCAGAGATTGTTA+AGG | - | chr1.3:15931780-15931799 | MS.gene93193:CDS | 35.0% | |
| GTTAGGTTAGGACTTAGATA+GGG | - | chr1.3:15930053-15930072 | MS.gene93193:CDS | 35.0% | |
| GTTTGAAAGGAAATGTGCAA+AGG | - | chr1.3:15931855-15931874 | MS.gene93193:CDS | 35.0% | |
| GTTTGTATGATTCCATTTCC+TGG | - | chr1.3:15930346-15930365 | MS.gene93193:CDS | 35.0% | |
| TACCAACACATATCCAAGAA+AGG | + | chr1.3:15929887-15929906 | None:intergenic | 35.0% | |
| TCATCAGAGGTAGATGAAAA+TGG | - | chr1.3:15929465-15929484 | MS.gene93193:CDS | 35.0% | |
| TGAAAATCAGAACTGTTGAG+AGG | - | chr1.3:15930807-15930826 | MS.gene93193:intron | 35.0% | |
| TGAAATTGCGATGAAGTGTA+AGG | - | chr1.3:15931609-15931628 | MS.gene93193:CDS | 35.0% | |
| TGGAGAAAAGAAAATCAAGC+AGG | - | chr1.3:15931987-15932006 | MS.gene93193:intron | 35.0% | |
| TGTGATATCCTCAAGATGAA+TGG | - | chr1.3:15931031-15931050 | MS.gene93193:intron | 35.0% | |
| TTCTCCTCATAAATGGAGTT+AGG | - | chr1.3:15930036-15930055 | MS.gene93193:CDS | 35.0% | |
| TTTCTGAACCATTCATCTTG+AGG | + | chr1.3:15931042-15931061 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr1.3:15930206-15930225 | None:intergenic | 35.0% |
| ! | CCAAAGATGCTATTGTTTTC+TGG | + | chr1.3:15932305-15932324 | None:intergenic | 35.0% |
| ! | GATGGACGATTTTCTTGAAA+TGG | - | chr1.3:15931183-15931202 | MS.gene93193:intron | 35.0% |
| ! | TATCTTTCCTAGACTTGTTC+AGG | - | chr1.3:15929094-15929113 | MS.gene93193:intron | 35.0% |
| ! | TCATGTACCGCATTTTTCTT+AGG | - | chr1.3:15928948-15928967 | MS.gene93193:intron | 35.0% |
| ! | TCTTGGATATGTGTTGGTAT+TGG | - | chr1.3:15929888-15929907 | MS.gene93193:CDS | 35.0% |
| ! | TGCTTCTAATAAGTTGACCT+TGG | + | chr1.3:15931560-15931579 | None:intergenic | 35.0% |
| ! | TTGATCTTTTCTATGTCAGG+AGG | - | chr1.3:15932245-15932264 | MS.gene93193:intron | 35.0% |
| !! | AGGTGTTGATGCAATTTCAT+CGG | + | chr1.3:15929415-15929434 | None:intergenic | 35.0% |
| !! | ATTAGAAGCAGAGGTTGATA+AGG | - | chr1.3:15931570-15931589 | MS.gene93193:CDS | 35.0% |
| !! | CAAAAGAGTTGGTCTTGAAT+CGG | - | chr1.3:15929035-15929054 | MS.gene93193:intron | 35.0% |
| !! | TGAGAAGTATTCTGATGAAC+AGG | - | chr1.3:15928625-15928644 | MS.gene93193:CDS | 35.0% |
| !! | TGCTATTGTTTTCTGGCATT+CGG | + | chr1.3:15932298-15932317 | None:intergenic | 35.0% |
| !! | TTGAAAGCAGGAAGTATCAA+AGG | - | chr1.3:15929290-15929309 | MS.gene93193:CDS | 35.0% |
| AAAAGGGAAGTTAGAGAAGG+TGG | - | chr1.3:15931342-15931361 | MS.gene93193:intron | 40.0% | |
| AAAGGAGGCAGTTCAGAAAT+TGG | - | chr1.3:15931438-15931457 | MS.gene93193:CDS | 40.0% | |
| AAGAAAAAAGCTGAGTGAGC+AGG | + | chr1.3:15929236-15929255 | None:intergenic | 40.0% | |
| AAGCAGAGATTGTTAAGGAG+AGG | - | chr1.3:15931785-15931804 | MS.gene93193:CDS | 40.0% | |
| AAGGGAGAAAAAGAAGAGGA+TGG | + | chr1.3:15930385-15930404 | None:intergenic | 40.0% | |
| AATGAAGTGTAGGGAATTGG+AGG | - | chr1.3:15931933-15931952 | MS.gene93193:intron | 40.0% | |
| AATTGGAGGAAGAGATACTC+AGG | - | chr1.3:15931947-15931966 | MS.gene93193:intron | 40.0% | |
| ACACAAGTGTTTAGTGCACA+AGG | + | chr1.3:15929208-15929227 | None:intergenic | 40.0% | |
| ACTTCTTCCTGAACAAGTCT+AGG | + | chr1.3:15929104-15929123 | None:intergenic | 40.0% | |
| AGAAAAAAGCTGAGTGAGCA+GGG | + | chr1.3:15929235-15929254 | None:intergenic | 40.0% | |
| AGAAAATCGCCTAATGAGCA+TGG | - | chr1.3:15931510-15931529 | MS.gene93193:CDS | 40.0% | |
| AGAAATCAAACTCGGCAATC+CGG | - | chr1.3:15929163-15929182 | MS.gene93193:intron | 40.0% | |
| AGATGAATGGTTCAGAAACC+AGG | - | chr1.3:15931044-15931063 | MS.gene93193:intron | 40.0% | |
| AGCAGAGATTGTTAAGGAGA+GGG | - | chr1.3:15931786-15931805 | MS.gene93193:CDS | 40.0% | |
| AGCCGAAAAAACTCACGAAT+TGG | - | chr1.3:15930619-15930638 | MS.gene93193:CDS | 40.0% | |
| AGGAAGAAACTCTAACTGAC+GGG | - | chr1.3:15929664-15929683 | MS.gene93193:CDS | 40.0% | |
| AGTGACTGTTGAATAGAGAC+CGG | + | chr1.3:15929987-15930006 | None:intergenic | 40.0% | |
| ATATGCGTCAAACGGTTGAA+TGG | - | chr1.3:15930729-15930748 | MS.gene93193:CDS | 40.0% | |
| ATATTTGTTCAGGGATGCAC+CGG | + | chr1.3:15932502-15932521 | None:intergenic | 40.0% | |
| ATCATCAACATCTTCAGCAC+AGG | + | chr1.3:15929367-15929386 | None:intergenic | 40.0% | |
| ATGTGGAGGATGCATTCAAA+TGG | - | chr1.3:15932423-15932442 | MS.gene93193:intron | 40.0% | |
| CATAAATGGTGGTTCATCAG+AGG | - | chr1.3:15929452-15929471 | MS.gene93193:CDS | 40.0% | |
| CGGATAAGAAGAGATGGTTA+TGG | - | chr1.3:15928537-15928556 | MS.gene93193:CDS | 40.0% | |
| CTGCGTGTCTACGAATTATT+CGG | - | chr1.3:15929920-15929939 | MS.gene93193:CDS | 40.0% | |
| CTTAGAAGCAGAGGTTGAAA+AGG | - | chr1.3:15931885-15931904 | MS.gene93193:intron | 40.0% | |
| GAATGCTAGCAGTGTCAATA+AGG | + | chr1.3:15932365-15932384 | None:intergenic | 40.0% | |
| GATAGAGTCACTCATCTAGA+TGG | - | chr1.3:15930524-15930543 | MS.gene93193:CDS | 40.0% | |
| GCAAAATGAGGATGAAGCAA+TGG | + | chr1.3:15930954-15930973 | None:intergenic | 40.0% | |
| GCATGAGATCCTAGTTCAAT+CGG | - | chr1.3:15930778-15930797 | MS.gene93193:intron | 40.0% | |
| GGAGTCACATCTTCAGTTAA+AGG | - | chr1.3:15931420-15931439 | MS.gene93193:CDS | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | + | chr1.3:15930218-15930237 | None:intergenic | 40.0% | |
| GGTCAACTTATTAGAAGCAG+AGG | - | chr1.3:15931561-15931580 | MS.gene93193:CDS | 40.0% | |
| GTAGAAGAAGACGATGAAAG+TGG | + | chr1.3:15932537-15932556 | None:intergenic | 40.0% | |
| GTCACATCTTCAGTTAAAGG+AGG | - | chr1.3:15931423-15931442 | MS.gene93193:CDS | 40.0% | |
| TATCTTCATTCTCCGACACT+CGG | + | chr1.3:15930909-15930928 | None:intergenic | 40.0% | |
| TGAACGTGATATGCGTCAAA+CGG | - | chr1.3:15930721-15930740 | MS.gene93193:CDS | 40.0% | |
| TGACATCATGACTCAGCAAA+TGG | - | chr1.3:15931312-15931331 | MS.gene93193:intron | 40.0% | |
| TGCAATGAAGTGTAGGGAAT+TGG | - | chr1.3:15931930-15931949 | MS.gene93193:intron | 40.0% | |
| TGCATCCCTGAACAAATATG+AGG | - | chr1.3:15932503-15932522 | MS.gene93193:intron | 40.0% | |
| TGCTTTCTAACTCTTTCTCC+AGG | + | chr1.3:15931636-15931655 | None:intergenic | 40.0% | |
| TGTCAATGCCAAAGAAGACT+TGG | - | chr1.3:15929728-15929747 | MS.gene93193:CDS | 40.0% | |
| TTTCACGTATGGAAAACACG+AGG | - | chr1.3:15928721-15928740 | MS.gene93193:CDS | 40.0% | |
| ! | AACTTGATGGATCAGCTTGT+CGG | + | chr1.3:15931147-15931166 | None:intergenic | 40.0% |
| ! | ATATGCAATGTGTCGTTGTC+TGG | + | chr1.3:15928929-15928948 | None:intergenic | 40.0% |
| ! | CGATTCAAGACCAACTCTTT+TGG | + | chr1.3:15929037-15929056 | None:intergenic | 40.0% |
| ! | TCATCTAGATGGAGCACTTA+AGG | - | chr1.3:15930535-15930554 | MS.gene93193:CDS | 40.0% |
| !! | AAGCAGAGGTTGATAAGGAA+AGG | - | chr1.3:15931575-15931594 | MS.gene93193:CDS | 40.0% |
| !! | AGCAGAGGTTGATAAGGAAA+GGG | - | chr1.3:15931576-15931595 | MS.gene93193:CDS | 40.0% |
| !! | GGTGTTGATGCAATTTCATC+GGG | + | chr1.3:15929414-15929433 | None:intergenic | 40.0% |
| !!! | TACAGCTTTTGAGGTGACAT+CGG | + | chr1.3:15929343-15929362 | None:intergenic | 40.0% |
| !!! | TTCGTGAGTTTTTTCGGCTA+CGG | + | chr1.3:15930618-15930637 | None:intergenic | 40.0% |
| AAAGTCTTCCGAGAAGAGTC+CGG | - | chr1.3:15928565-15928584 | MS.gene93193:CDS | 45.0% | |
| AAATCAAACTCGGCAATCCG+GGG | - | chr1.3:15929165-15929184 | MS.gene93193:intron | 45.0% | |
| AAATCGCCTAATGAGCATGG+AGG | - | chr1.3:15931513-15931532 | MS.gene93193:CDS | 45.0% | |
| AACCAAGTTGTTCCGACTCA+TGG | - | chr1.3:15931071-15931090 | MS.gene93193:intron | 45.0% | |
| AAGCAGAGGTTGAAAAGGAG+AGG | - | chr1.3:15931890-15931909 | MS.gene93193:intron | 45.0% | |
| AATTCGACCCTTCTCAGAAC+TGG | + | chr1.3:15932586-15932605 | None:intergenic | 45.0% | |
| ACCAAGTTGTTCCGACTCAT+GGG | - | chr1.3:15931072-15931091 | MS.gene93193:intron | 45.0% | |
| AGACAGAGAATATGGCTCTC+AGG | - | chr1.3:15930756-15930775 | MS.gene93193:intron | 45.0% | |
| AGACTCCACTTCTTCTAGGT+TGG | - | chr1.3:15932464-15932483 | MS.gene93193:intron | 45.0% | |
| AGAGAGACTCCACTTCTTCT+AGG | - | chr1.3:15932460-15932479 | MS.gene93193:intron | 45.0% | |
| AGCAATGATTGCTGGACTTG+TGG | + | chr1.3:15932388-15932407 | None:intergenic | 45.0% | |
| AGCAGAGGTTGAAAAGGAGA+GGG | - | chr1.3:15931891-15931910 | MS.gene93193:intron | 45.0% | |
| AGGAAGGTGAATTCAGTAGC+AGG | + | chr1.3:15928906-15928925 | None:intergenic | 45.0% | |
| GAAAGCAAATCGGCAATGCT+TGG | - | chr1.3:15931649-15931668 | MS.gene93193:CDS | 45.0% | |
| GAAATCAAACTCGGCAATCC+GGG | - | chr1.3:15929164-15929183 | MS.gene93193:intron | 45.0% | |
| GAAATCTCTGGCTACACTTG+AGG | - | chr1.3:15932335-15932354 | MS.gene93193:intron | 45.0% | |
| GAAGAAGTGGAGTCTCTCTT+AGG | + | chr1.3:15932459-15932478 | None:intergenic | 45.0% | |
| GAGAGATTCGACGCAAAATG+AGG | + | chr1.3:15930966-15930985 | None:intergenic | 45.0% | |
| GCAATGATTGCTGGACTTGT+GGG | + | chr1.3:15932387-15932406 | None:intergenic | 45.0% | |
| GGAAGGTGAATTCAGTAGCA+GGG | + | chr1.3:15928905-15928924 | None:intergenic | 45.0% | |
| GTTCCTCTCCTTATCAACGT+TGG | + | chr1.3:15931686-15931705 | None:intergenic | 45.0% | |
| TCAGCTCTTCCGATTGAACT+AGG | + | chr1.3:15930790-15930809 | None:intergenic | 45.0% | |
| TCCAGCAATCATTGCTCATG+CGG | - | chr1.3:15932392-15932411 | MS.gene93193:intron | 45.0% | |
| TCTCCATACAAGCTAGCTGT+TGG | + | chr1.3:15931973-15931992 | None:intergenic | 45.0% | |
| TGCTTGCTTTCTGTATCGTC+CGG | - | chr1.3:15929965-15929984 | MS.gene93193:CDS | 45.0% | |
| TGTTTGCTTAGGCTGGGAAA+AGG | - | chr1.3:15930433-15930452 | MS.gene93193:CDS | 45.0% | |
| TTCTAGCCGAATACCACTCT+TGG | + | chr1.3:15932634-15932653 | None:intergenic | 45.0% | |
| TTCTCAGAACTGGCGTGATT+TGG | + | chr1.3:15932576-15932595 | None:intergenic | 45.0% | |
| ! | AAGCCAACGTTGATAAGGAG+AGG | - | chr1.3:15931680-15931699 | MS.gene93193:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1.3:15930137-15930156 | MS.gene93193:CDS | 45.0% |
| ! | ACTTCTTCTAGGTTGGCTGA+CGG | - | chr1.3:15932471-15932490 | MS.gene93193:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1.3:15930136-15930155 | MS.gene93193:CDS | 45.0% |
| ! | GAGCACTTAAGGAGTGTGTT+AGG | - | chr1.3:15930546-15930565 | MS.gene93193:CDS | 45.0% |
| ! | GGTTGACTTCTTAGAAGCAG+AGG | - | chr1.3:15931876-15931895 | MS.gene93193:CDS | 45.0% |
| ! | TGTGTGAGTACTGTAAACCC+CGG | + | chr1.3:15929185-15929204 | None:intergenic | 45.0% |
| ! | TTTTTCTCGCGAACCAAGAG+TGG | - | chr1.3:15932618-15932637 | MS.gene93193:CDS | 45.0% |
| !! | AAATCACGCCAGTTCTGAGA+AGG | - | chr1.3:15932575-15932594 | MS.gene93193:CDS | 45.0% |
| !! | AAGCAGCTTTGTTGAGGAGT+TGG | - | chr1.3:15931240-15931259 | MS.gene93193:intron | 45.0% |
| !! | AATCACGCCAGTTCTGAGAA+GGG | - | chr1.3:15932576-15932595 | MS.gene93193:CDS | 45.0% |
| !! | AGTTCTGAGAAGGGTCGAAT+TGG | - | chr1.3:15932585-15932604 | MS.gene93193:CDS | 45.0% |
| !! | TGATCTAAATGACGGGTCAG+TGG | - | chr1.3:15929518-15929537 | MS.gene93193:CDS | 45.0% |
| !!! | ACAGCTTTTGAGGTGACATC+GGG | + | chr1.3:15929342-15929361 | None:intergenic | 45.0% |
| AACTTGACACGGTCACTCTC+AGG | - | chr1.3:15930486-15930505 | MS.gene93193:CDS | 50.0% | |
| AAGTCTTCCGAGAAGAGTCC+GGG | - | chr1.3:15928566-15928585 | MS.gene93193:CDS | 50.0% | |
| ACCTGGCGGAAGAGTTTGAA+AGG | - | chr1.3:15931842-15931861 | MS.gene93193:CDS | 50.0% | |
| ACTAGCTGTCTCAGCTGCTT+GGG | + | chr1.3:15930843-15930862 | None:intergenic | 50.0% | |
| AGTCTGCCTCCATGCTCATT+AGG | + | chr1.3:15931522-15931541 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1.3:15930138-15930157 | None:intergenic | 50.0% | |
| CCAGCAATCATTGCTCATGC+GGG | - | chr1.3:15932393-15932412 | MS.gene93193:intron | 50.0% | |
| CGAAATTGCGGCCAAGTGTA+AGG | - | chr1.3:15931819-15931838 | MS.gene93193:CDS | 50.0% | |
| CGCGAACCAAGAGTGGTATT+CGG | - | chr1.3:15932625-15932644 | MS.gene93193:CDS | 50.0% | |
| CTCTCACACGCTATCTTCCA+AGG | - | chr1.3:15931540-15931559 | MS.gene93193:CDS | 50.0% | |
| CTGCTTGCGTTCTTAGTCTC+GGG | + | chr1.3:15931226-15931245 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1.3:15930141-15930160 | MS.gene93193:CDS | 50.0% | |
| GCTAGAGAGCAAACGTGCAA+AGG | - | chr1.3:15931750-15931769 | MS.gene93193:CDS | 50.0% | |
| GCTGCTTGCGTTCTTAGTCT+CGG | + | chr1.3:15931227-15931246 | None:intergenic | 50.0% | |
| GGAACAACTTGGTTCACACC+TGG | + | chr1.3:15931065-15931084 | None:intergenic | 50.0% | |
| GGAGGCAGTTCAGAAATTGG+AGG | - | chr1.3:15931441-15931460 | MS.gene93193:CDS | 50.0% | |
| GGGGAATCAGCTGAAATCTC+TGG | - | chr1.3:15932323-15932342 | MS.gene93193:intron | 50.0% | |
| GGTTGCGTCAGACGAAATTG+CGG | - | chr1.3:15931807-15931826 | MS.gene93193:CDS | 50.0% | |
| GTCAGCCAACCTAGAAGAAG+TGG | + | chr1.3:15932472-15932491 | None:intergenic | 50.0% | |
| GTTGCTGAAGAAGCCATAGC+AGG | - | chr1.3:15929768-15929787 | MS.gene93193:CDS | 50.0% | |
| TACTAGCTGTCTCAGCTGCT+TGG | + | chr1.3:15930844-15930863 | None:intergenic | 50.0% | |
| TCCTTTCAAACTCTTCCGCC+AGG | + | chr1.3:15931846-15931865 | None:intergenic | 50.0% | |
| TGCGATGAAGTGTAAGGACC+TGG | - | chr1.3:15931615-15931634 | MS.gene93193:CDS | 50.0% | |
| ! | AAACTCTAACTGACGGGTCG+AGG | - | chr1.3:15929670-15929689 | MS.gene93193:CDS | 50.0% |
| ! | AACTCTAACTGACGGGTCGA+GGG | - | chr1.3:15929671-15929690 | MS.gene93193:CDS | 50.0% |
| ! | AGAACTGGCGTGATTTGGCA+AGG | + | chr1.3:15932571-15932590 | None:intergenic | 50.0% |
| ! | AGCACAGGCTACAGCTTTTG+AGG | + | chr1.3:15929352-15929371 | None:intergenic | 50.0% |
| ! | AGGCCAACAGCTAGCTTGTA+TGG | - | chr1.3:15931967-15931986 | MS.gene93193:intron | 50.0% |
| ! | ATGTGTCGTTGTCTGGAGGA+AGG | + | chr1.3:15928922-15928941 | None:intergenic | 50.0% |
| ! | CAGTACTGAGAGGCTAACTG+CGG | - | chr1.3:15931003-15931022 | MS.gene93193:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1.3:15930135-15930154 | MS.gene93193:CDS | 50.0% |
| ! | GTCAGTCAGACAGTACTGAG+AGG | - | chr1.3:15930993-15931012 | MS.gene93193:intron | 50.0% |
| ! | TGCAATGTGTCGTTGTCTGG+AGG | + | chr1.3:15928926-15928945 | None:intergenic | 50.0% |
| !! | GAACGCAAGCAGCTTTGTTG+AGG | - | chr1.3:15931234-15931253 | MS.gene93193:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1.3:15930149-15930168 | MS.gene93193:CDS | 55.0% | |
| AGCTTCACCCGGACTCTTCT+CGG | + | chr1.3:15928576-15928595 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1.3:15930150-15930169 | None:intergenic | 55.0% | |
| CCAAGCTTGAGTCCGAGTGT+CGG | - | chr1.3:15930894-15930913 | MS.gene93193:intron | 55.0% | |
| CCCGCATGAGCAATGATTGC+TGG | + | chr1.3:15932396-15932415 | None:intergenic | 55.0% | |
| CCTGAACTCTCAGCTTCACC+CGG | + | chr1.3:15928587-15928606 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1.3:15930143-15930162 | None:intergenic | 55.0% | |
| CTGGCATTCGGCAAGCTTTC+CGG | + | chr1.3:15932286-15932305 | None:intergenic | 55.0% | |
| GCAATCATTGCTCATGCGGG+TGG | - | chr1.3:15932396-15932415 | MS.gene93193:intron | 55.0% | |
| GCCCATGAGTCGGAACAACT+TGG | + | chr1.3:15931076-15931095 | None:intergenic | 55.0% | |
| TACTGAGAGGCTAACTGCGG+TGG | - | chr1.3:15931006-15931025 | MS.gene93193:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1.3:15930149-15930168 | None:intergenic | 55.0% | |
| TTCCGCCAGGTCCTTACACT+TGG | + | chr1.3:15931833-15931852 | None:intergenic | 55.0% | |
| ATGCGGGTGGAGAGATGTGG+AGG | - | chr1.3:15932409-15932428 | MS.gene93193:intron | 60.0% | |
| CCGACACTCGGACTCAAGCT+TGG | + | chr1.3:15930897-15930916 | None:intergenic | 60.0% | |
| CCGGGTGAAGCTGAGAGTTC+AGG | - | chr1.3:15928584-15928603 | MS.gene93193:CDS | 60.0% | |
| CTCATGCGGGTGGAGAGATG+TGG | - | chr1.3:15932406-15932425 | MS.gene93193:intron | 60.0% | |
| GGCCAAGTGTAAGGACCTGG+CGG | - | chr1.3:15931828-15931847 | MS.gene93193:CDS | 60.0% | |
| TAGCGCAGACGCCCATGAGT+CGG | + | chr1.3:15931086-15931105 | None:intergenic | 60.0% | |
| TCAGGAGGACCTAGCACTCG+CGG | - | chr1.3:15932260-15932279 | MS.gene93193:intron | 60.0% | |
| TGCGGCCAAGTGTAAGGACC+TGG | - | chr1.3:15931825-15931844 | MS.gene93193:CDS | 60.0% | |
| ! | AGGTTGGCTGACGGTAGCTC+CGG | - | chr1.3:15932480-15932499 | MS.gene93193:intron | 60.0% |
| GAGGACCTAGCACTCGCGGC+CGG | - | chr1.3:15932264-15932283 | MS.gene93193:intron | 70.0% | |
| GCTTTCCGGCCGCGAGTGCT+AGG | + | chr1.3:15932272-15932291 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15928533 | 15932659 | 15928533 | ID=MS.gene93193 |
| chr1.3 | mRNA | 15928533 | 15932659 | 15928533 | ID=MS.gene93193.t1;Parent=MS.gene93193 |
| chr1.3 | exon | 15932546 | 15932659 | 15932546 | ID=MS.gene93193.t1.exon1;Parent=MS.gene93193.t1 |
| chr1.3 | CDS | 15932546 | 15932659 | 15932546 | ID=cds.MS.gene93193.t1;Parent=MS.gene93193.t1 |
| chr1.3 | exon | 15931403 | 15931895 | 15931403 | ID=MS.gene93193.t1.exon2;Parent=MS.gene93193.t1 |
| chr1.3 | CDS | 15931403 | 15931895 | 15931403 | ID=cds.MS.gene93193.t1;Parent=MS.gene93193.t1 |
| chr1.3 | exon | 15929184 | 15930748 | 15929184 | ID=MS.gene93193.t1.exon3;Parent=MS.gene93193.t1 |
| chr1.3 | CDS | 15929184 | 15930748 | 15929184 | ID=cds.MS.gene93193.t1;Parent=MS.gene93193.t1 |
| chr1.3 | exon | 15928533 | 15928928 | 15928533 | ID=MS.gene93193.t1.exon4;Parent=MS.gene93193.t1 |
| chr1.3 | CDS | 15928533 | 15928928 | 15928533 | ID=cds.MS.gene93193.t1;Parent=MS.gene93193.t1 |
| Gene Sequence |
| Protein sequence |
