Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33602.t1 | XP_013466487.1 | 92.3 | 854 | 41 | 2 | 1 | 853 | 1 | 830 | 1.80E-272 | 948.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33602.t1 | Q8LLE5 | 59.1 | 320 | 122 | 4 | 185 | 496 | 2 | 320 | 7.8e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33602.t1 | A0A072VGG6 | 92.3 | 854 | 41 | 2 | 1 | 853 | 1 | 830 | 1.3e-272 | 948.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33602 | MS.gene40942 | PPI |
| MS.gene33602 | MS.gene013262 | PPI |
| MS.gene33602 | MS.gene030571 | PPI |
| MS.gene33602 | MS.gene70169 | PPI |
| MS.gene33602 | MS.gene049233 | PPI |
| MS.gene33602 | MS.gene73663 | PPI |
| MS.gene030570 | MS.gene33602 | PPI |
| MS.gene33602 | MS.gene49718 | PPI |
| MS.gene33602 | MS.gene06347 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33602.t1 | MTR_1g030010 | 92.506 | 854 | 39 | 2 | 1 | 853 | 1 | 830 | 0.0 | 1506 |
| MS.gene33602.t1 | MTR_3g096990 | 40.252 | 713 | 349 | 15 | 150 | 813 | 39 | 723 | 1.48e-121 | 384 |
| MS.gene33602.t1 | MTR_8g094760 | 47.149 | 456 | 200 | 6 | 169 | 602 | 61 | 497 | 5.52e-111 | 353 |
| MS.gene33602.t1 | MTR_8g094760 | 33.333 | 294 | 115 | 10 | 594 | 850 | 377 | 626 | 1.82e-20 | 97.1 |
| MS.gene33602.t1 | MTR_8g094760 | 47.149 | 456 | 200 | 6 | 169 | 602 | 73 | 509 | 1.25e-110 | 353 |
| MS.gene33602.t1 | MTR_8g094760 | 33.333 | 294 | 115 | 10 | 594 | 850 | 389 | 638 | 2.80e-20 | 96.7 |
| MS.gene33602.t1 | MTR_3g096990 | 45.806 | 465 | 219 | 7 | 161 | 602 | 50 | 504 | 8.04e-96 | 313 |
| MS.gene33602.t1 | MTR_3g113290 | 42.918 | 233 | 107 | 3 | 160 | 366 | 86 | 318 | 9.44e-43 | 169 |
| MS.gene33602.t1 | MTR_1g024095 | 41.453 | 234 | 109 | 3 | 160 | 366 | 67 | 299 | 2.37e-40 | 161 |
| MS.gene33602.t1 | MTR_1g024095 | 41.453 | 234 | 109 | 3 | 160 | 366 | 67 | 299 | 2.51e-40 | 160 |
| MS.gene33602.t1 | MTR_5g021810 | 34.783 | 230 | 124 | 3 | 163 | 366 | 70 | 299 | 1.75e-31 | 132 |
| MS.gene33602.t1 | MTR_5g021810 | 34.783 | 230 | 124 | 3 | 163 | 366 | 71 | 300 | 1.81e-31 | 132 |
| MS.gene33602.t1 | MTR_4g094848 | 38.117 | 223 | 112 | 5 | 162 | 358 | 33 | 255 | 4.89e-27 | 119 |
| MS.gene33602.t1 | MTR_5g016830 | 32.609 | 322 | 153 | 9 | 171 | 460 | 50 | 339 | 1.16e-25 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33602.t1 | AT1G21810 | 38.451 | 723 | 288 | 18 | 182 | 853 | 13 | 629 | 1.45e-108 | 347 |
| MS.gene33602.t1 | AT1G21810 | 38.451 | 723 | 288 | 18 | 182 | 853 | 13 | 629 | 1.45e-108 | 347 |
| MS.gene33602.t1 | AT3G05270 | 38.615 | 650 | 320 | 13 | 130 | 759 | 25 | 615 | 5.77e-92 | 303 |
| MS.gene33602.t1 | AT3G05270 | 47.297 | 74 | 29 | 2 | 3 | 75 | 2 | 66 | 1.85e-11 | 68.2 |
| MS.gene33602.t1 | AT3G05270 | 38.615 | 650 | 320 | 13 | 130 | 759 | 25 | 615 | 5.77e-92 | 303 |
| MS.gene33602.t1 | AT3G05270 | 47.297 | 74 | 29 | 2 | 3 | 75 | 2 | 66 | 1.85e-11 | 68.2 |
| MS.gene33602.t1 | AT3G05270 | 38.615 | 650 | 320 | 13 | 130 | 759 | 25 | 615 | 5.77e-92 | 303 |
| MS.gene33602.t1 | AT3G05270 | 47.297 | 74 | 29 | 2 | 3 | 75 | 2 | 66 | 1.85e-11 | 68.2 |
| MS.gene33602.t1 | AT1G77580 | 49.271 | 343 | 121 | 7 | 162 | 497 | 22 | 318 | 1.83e-83 | 280 |
| MS.gene33602.t1 | AT1G77580 | 49.271 | 343 | 121 | 7 | 162 | 497 | 22 | 318 | 2.70e-82 | 280 |
| MS.gene33602.t1 | AT1G77580 | 49.271 | 343 | 121 | 7 | 162 | 497 | 56 | 352 | 3.96e-82 | 280 |
| MS.gene33602.t1 | AT1G77580 | 49.271 | 343 | 121 | 7 | 162 | 497 | 56 | 352 | 3.96e-82 | 280 |
| MS.gene33602.t1 | AT1G21810 | 35.126 | 595 | 247 | 16 | 309 | 853 | 1 | 506 | 3.36e-67 | 233 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G19835 | 38.636 | 264 | 129 | 5 | 164 | 395 | 61 | 323 | 3.01e-41 | 164 |
| MS.gene33602.t1 | AT1G47900 | 35.741 | 263 | 140 | 4 | 162 | 395 | 109 | 371 | 1.13e-36 | 149 |
| MS.gene33602.t1 | AT1G47900 | 35.741 | 263 | 140 | 4 | 162 | 395 | 109 | 371 | 1.13e-36 | 149 |
| MS.gene33602.t1 | AT1G47900 | 35.741 | 263 | 140 | 4 | 162 | 395 | 109 | 371 | 1.13e-36 | 149 |
| MS.gene33602.t1 | AT4G36120 | 38.667 | 225 | 110 | 3 | 169 | 366 | 76 | 299 | 4.40e-35 | 144 |
| MS.gene33602.t1 | AT4G36120 | 38.667 | 225 | 110 | 3 | 169 | 366 | 76 | 299 | 4.40e-35 | 144 |
| MS.gene33602.t1 | AT2G23360 | 37.624 | 202 | 101 | 2 | 190 | 366 | 51 | 252 | 3.36e-24 | 109 |
Find 171 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTTGCTTTGATTTGT+AGG | 0.158511 | 1.1:+15831501 | None:intergenic |
| CTGGCATTCGGCAAGCTTTC+CGG | 0.169197 | 1.1:+15830706 | None:intergenic |
| CCAGAAAACAATAGCATCTT+TGG | 0.227504 | 1.1:-15830687 | MS.gene33602:CDS |
| AGCTTTCCTCATATTTGTTC+AGG | 0.245451 | 1.1:+15830480 | None:intergenic |
| TTCGTTGTCAACGCATTTAT+CGG | 0.255681 | 1.1:+15831720 | None:intergenic |
| CAGCAAATGGATGAACTAAA+AGG | 0.264463 | 1.1:-15831664 | MS.gene33602:CDS |
| AAAGGAGGCAGTTCAGAAAT+TGG | 0.278157 | 1.1:-15831551 | MS.gene33602:CDS |
| AGAGAGACTCCACTTCTTCT+AGG | 0.279649 | 1.1:-15830529 | MS.gene33602:CDS |
| CCTACTACATGCATCATAAA+TGG | 0.290764 | 1.1:-15833554 | MS.gene33602:CDS |
| TTGAAGTATCTAATTTGTTC+TGG | 0.297055 | 1.1:+15832307 | None:intergenic |
| TTCTCAGAACTGGCGTGATT+TGG | 0.303370 | 1.1:+15830416 | None:intergenic |
| ATGCTGTTTAACCAAGTCTT+TGG | 0.315149 | 1.1:+15833256 | None:intergenic |
| TCATCAGAGGTAGATGAAAA+TGG | 0.339325 | 1.1:-15833527 | MS.gene33602:CDS |
| ATCACGTTCAACAGAAGATT+TGG | 0.341973 | 1.1:+15832281 | None:intergenic |
| TGCAATGAAGTGTAGGGAAT+TGG | 0.368718 | 1.1:-15831059 | MS.gene33602:CDS |
| CTGGGTGAAGCTGAGAGTTC+AGG | 0.369209 | 1.1:-15834408 | MS.gene33602:CDS |
| TACTAGCTGTCTCAGCTGCT+TGG | 0.369218 | 1.1:+15832148 | None:intergenic |
| CAGAAAACAATAGCATCTTT+GGG | 0.371111 | 1.1:-15830686 | MS.gene33602:CDS |
| GGAGTCACATCTTCAGTTAA+AGG | 0.375808 | 1.1:-15831569 | MS.gene33602:CDS |
| TCATCTAGATGGAGCACTTA+AGG | 0.382656 | 1.1:-15832454 | MS.gene33602:CDS |
| AAAGTCTTCCGAGAAGAGTC+TGG | 0.384745 | 1.1:-15834427 | MS.gene33602:CDS |
| ACTAGCTGTCTCAGCTGCTT+GGG | 0.387288 | 1.1:+15832149 | None:intergenic |
| GAAGAAGTGGAGTCTCTCTT+AGG | 0.390406 | 1.1:+15830533 | None:intergenic |
| CCCGCATGAGCAATGATTGC+TGG | 0.393330 | 1.1:+15830596 | None:intergenic |
| GAATGCTAGCAGTGTCAATA+AGG | 0.394242 | 1.1:+15830627 | None:intergenic |
| AGCAGAGATTGTTAAGGAGA+GGG | 0.395136 | 1.1:-15831203 | MS.gene33602:CDS |
| GTTAGAAGCAGAGATTGTTA+AGG | 0.395902 | 1.1:-15831209 | MS.gene33602:CDS |
| GCAATGATTGCTGGACTTGC+GGG | 0.396942 | 1.1:+15830605 | None:intergenic |
| AGCTTCACCCAGACTCTTCT+CGG | 0.408366 | 1.1:+15834419 | None:intergenic |
| GGTAGATGAAAATGGAGAAA+AGG | 0.409058 | 1.1:-15833519 | MS.gene33602:CDS |
| GCTTTCCGGCCGCGAGTGCT+AGG | 0.411337 | 1.1:+15830720 | None:intergenic |
| AGGCCAACAGCTAGCTTGTA+TGG | 0.413438 | 1.1:-15831022 | MS.gene33602:CDS |
| TGCTTTCTAACTCTTTCTCC+AGG | 0.415864 | 1.1:+15831356 | None:intergenic |
| CTTAGAAGCAGAGGTTGAAA+AGG | 0.424596 | 1.1:-15831104 | MS.gene33602:CDS |
| GATAGAGTCACTCATCTAGA+TGG | 0.442078 | 1.1:-15832465 | MS.gene33602:CDS |
| TTCTAGCCGAATACCACTCT+TGG | 0.444679 | 1.1:+15830358 | None:intergenic |
| CGGATAAGAAGAGATGGTTA+TGG | 0.445207 | 1.1:-15834455 | MS.gene33602:CDS |
| GCTTTCCTCATATTTGTTCA+GGG | 0.445685 | 1.1:+15830481 | None:intergenic |
| AGTTCTGAGAAGGGTCGAAT+TGG | 0.445703 | 1.1:-15830404 | MS.gene33602:CDS |
| ATTAGAAGCCAACGTTGATA+AGG | 0.446707 | 1.1:-15831314 | MS.gene33602:CDS |
| TGAGAAGTATTCTGATGAAC+AGG | 0.447757 | 1.1:-15834367 | MS.gene33602:intron |
| GTATCAAAGGAAGCTTCTAA+TGG | 0.451590 | 1.1:-15833689 | MS.gene33602:CDS |
| AACCAAGTTGTTCCGACTCA+TGG | 0.454388 | 1.1:-15831918 | MS.gene33602:CDS |
| ATTAGAAGCAGAGGTTGATA+AGG | 0.454787 | 1.1:-15831419 | MS.gene33602:CDS |
| GAGCACTTAAGGAGTGTGTT+AGG | 0.454819 | 1.1:-15832443 | MS.gene33602:CDS |
| CGAAATTGCGGCCAAGTGTA+AGG | 0.456297 | 1.1:-15831170 | MS.gene33602:CDS |
| AAAAGGGAAGTTAGAGAAGG+TGG | 0.456647 | 1.1:-15831647 | MS.gene33602:CDS |
| GGTGTTGATGCAATTTCATC+GGG | 0.459416 | 1.1:+15833581 | None:intergenic |
| GGGGAATCAGCTGAAATCTC+TGG | 0.459529 | 1.1:-15830666 | MS.gene33602:CDS |
| AATTCGACCCTTCTCAGAAC+TGG | 0.460941 | 1.1:+15830406 | None:intergenic |
| AAAATCTAACTGACGGGTCG+AGG | 0.465615 | 1.1:-15833322 | MS.gene33602:CDS |
| TCAGCTCTTCCGATTGAACT+AGG | 0.465664 | 1.1:+15832202 | None:intergenic |
| ATGGTTAGAGACAGAGAATA+TGG | 0.466296 | 1.1:-15832241 | MS.gene33602:CDS |
| TATTATTAACATACCTGCTA+TGG | 0.467238 | 1.1:+15833214 | None:intergenic |
| TCCTTTCAAACTCTTCCGCC+AGG | 0.469800 | 1.1:+15831146 | None:intergenic |
| AAGAAATTGCAATGAAGTGT+AGG | 0.469994 | 1.1:-15831066 | MS.gene33602:CDS |
| GTGTCGGAGAATGAAGATAA+TGG | 0.470944 | 1.1:-15832079 | MS.gene33602:CDS |
| CGCGAACCAAGAGTGGTATT+CGG | 0.471935 | 1.1:-15830364 | MS.gene33602:CDS |
| AACTTGACACGGTCACTCTC+AGG | 0.474253 | 1.1:-15832503 | MS.gene33602:CDS |
| AAGCAGCTTTGTTGAGGAGT+TGG | 0.475100 | 1.1:-15831749 | MS.gene33602:CDS |
| CATTGCAATTTCTTCAGACA+TGG | 0.480327 | 1.1:+15831075 | None:intergenic |
| TGTTTGCTTAGGCTGGGAAA+AGG | 0.481268 | 1.1:-15832556 | MS.gene33602:intron |
| CTGCTTGCGTTCTTAGTCTC+GGG | 0.481931 | 1.1:+15831766 | None:intergenic |
| TTCTCTTAAAATAGATCTGA+TGG | 0.482089 | 1.1:-15831824 | MS.gene33602:CDS |
| GCTGCTTGCGTTCTTAGTCT+CGG | 0.482246 | 1.1:+15831765 | None:intergenic |
| AAGATCTAAATGACGGGTCA+AGG | 0.484562 | 1.1:-15833400 | MS.gene33602:CDS |
| GAAAGCAAATCGGCAATGCT+TGG | 0.488948 | 1.1:-15831340 | MS.gene33602:CDS |
| TCTCCATACAAGCTAGCTGT+TGG | 0.492340 | 1.1:+15831019 | None:intergenic |
| ATATGCGTCAAACGGTTGAA+TGG | 0.492627 | 1.1:-15832260 | MS.gene33602:CDS |
| GCATGAGATCCTAGTTCAAT+CGG | 0.494988 | 1.1:-15832211 | MS.gene33602:CDS |
| AGGTGTTGATGCAATTTCAT+CGG | 0.499092 | 1.1:+15833580 | None:intergenic |
| TGCTTCTAATAAGTTGACCT+TGG | 0.499199 | 1.1:+15831432 | None:intergenic |
| TTCCGCCAGGTCCTTACACT+TGG | 0.500047 | 1.1:+15831159 | None:intergenic |
| ATTCTTGAATTGATCAAGCT+CGG | 0.500571 | 1.1:+15831879 | None:intergenic |
| TGACATCATGACTCAGCAAA+TGG | 0.504440 | 1.1:-15831677 | MS.gene33602:CDS |
| AGCAAATGGATGAACTAAAA+GGG | 0.505397 | 1.1:-15831663 | MS.gene33602:CDS |
| AGACAGAGAATATGGCTCTC+AGG | 0.506015 | 1.1:-15832233 | MS.gene33602:CDS |
| TAATGTCAATGCCAAAGACT+TGG | 0.507447 | 1.1:-15833267 | MS.gene33602:CDS |
| AGTCTGCCTCCATGCTCATT+AGG | 0.510576 | 1.1:+15831470 | None:intergenic |
| CCATTTATGATGCATGTAGT+AGG | 0.514775 | 1.1:+15833554 | None:intergenic |
| AAGCAGAGATTGTTAAGGAG+AGG | 0.518508 | 1.1:-15831204 | MS.gene33602:CDS |
| AACTTGATGGATCAGCTTGT+CGG | 0.521719 | 1.1:+15831845 | None:intergenic |
| GTAGAAGAAGACGATGAAAG+TGG | 0.521926 | 1.1:+15830455 | None:intergenic |
| ATGTGGAGGATGCATTCAAA+TGG | 0.526273 | 1.1:-15830566 | MS.gene33602:CDS |
| AGGTTGGCTGACGGTAGCTC+CGG | 0.528682 | 1.1:-15830509 | MS.gene33602:CDS |
| TGCATCCCTGAACAAATATG+AGG | 0.529869 | 1.1:-15830486 | MS.gene33602:CDS |
| AATGAAGTGTAGGGAATTGG+AGG | 0.530196 | 1.1:-15831056 | MS.gene33602:CDS |
| TGAAATTGCGATGAAGTGTA+AGG | 0.531007 | 1.1:-15831380 | MS.gene33602:CDS |
| ATGATGCATGTAGTAGGTAA+AGG | 0.532551 | 1.1:+15833560 | None:intergenic |
| GAGGACCTAGCACTCGCGGC+CGG | 0.536253 | 1.1:-15830725 | MS.gene33602:CDS |
| GCTATTGTTAATATATCGAA+TGG | 0.539242 | 1.1:-15833428 | MS.gene33602:CDS |
| AGACTCCACTTCTTCTAGGT+TGG | 0.540766 | 1.1:-15830525 | MS.gene33602:CDS |
| TTTCTGAACCATTCATCTTG+AGG | 0.542279 | 1.1:+15831950 | None:intergenic |
| GAAAGAGTTAGAAAGCAAAT+CGG | 0.543732 | 1.1:-15831350 | MS.gene33602:CDS |
| AGAAATTGCAATGAAGTGTA+GGG | 0.545960 | 1.1:-15831065 | MS.gene33602:CDS |
| TGAAAATCAGAACTGTTGAG+AGG | 0.547415 | 1.1:-15832182 | MS.gene33602:CDS |
| TGTGATAACCTCAAGATGAA+TGG | 0.547937 | 1.1:-15831958 | MS.gene33602:CDS |
| ACCAAGTTGTTCCGACTCAT+GGG | 0.551428 | 1.1:-15831917 | MS.gene33602:CDS |
| GAAAAGAAGATCTAAATGAC+GGG | 0.554053 | 1.1:-15833406 | MS.gene33602:CDS |
| GCTAGAGAGCAAACGTGCAA+AGG | 0.554518 | 1.1:-15831239 | MS.gene33602:CDS |
| AAATCACGCCAGTTCTGAGA+AGG | 0.555578 | 1.1:-15830414 | MS.gene33602:CDS |
| GTCAGCCAACCTAGAAGAAG+TGG | 0.556265 | 1.1:+15830520 | None:intergenic |
| GGAAAAGAAGATCTAAATGA+CGG | 0.558459 | 1.1:-15833407 | MS.gene33602:CDS |
| TTGAAAGCAGGAAGTATCAA+AGG | 0.558653 | 1.1:-15833702 | MS.gene33602:intron |
| CTCTCACACGCTATCTTCCA+AGG | 0.559134 | 1.1:-15831449 | MS.gene33602:CDS |
| ATATTTGTTCAGGGATGCAC+CGG | 0.560765 | 1.1:+15830490 | None:intergenic |
| GCTATTGTTAATATACCGAA+TGG | 0.561611 | 1.1:-15833353 | MS.gene33602:CDS |
| AGAAAATCGCCTAATGAGCA+TGG | 0.562266 | 1.1:-15831479 | MS.gene33602:CDS |
| CCAGCAATCATTGCTCATGC+GGG | 0.562517 | 1.1:-15830596 | MS.gene33602:CDS |
| GAAATCTCTGGCTACACTTG+AGG | 0.562631 | 1.1:-15830654 | MS.gene33602:CDS |
| GGTTGACTTCTTAGAAGCAG+AGG | 0.562756 | 1.1:-15831113 | MS.gene33602:CDS |
| GGAACAACTTGGTTCACACC+TGG | 0.564647 | 1.1:+15831927 | None:intergenic |
| TGCGATGAAGTGTAAGGACC+TGG | 0.564649 | 1.1:-15831374 | MS.gene33602:CDS |
| GAACGCAAGCAGCTTTGTTG+AGG | 0.566647 | 1.1:-15831755 | MS.gene33602:CDS |
| GAAAATCAGAACTGTTGAGA+GGG | 0.566708 | 1.1:-15832181 | MS.gene33602:CDS |
| AGCAGAGGTTGAAAAGGAGA+GGG | 0.567149 | 1.1:-15831098 | MS.gene33602:CDS |
| TATCTTCATTCTCCGACACT+CGG | 0.569508 | 1.1:+15832083 | None:intergenic |
| GAGAGATTCGACGCAAAATG+AGG | 0.570827 | 1.1:+15832026 | None:intergenic |
| GTTGCTGAAGAAGCCATAGC+AGG | 0.570953 | 1.1:-15833227 | MS.gene33602:intron |
| CCGACACTCGGACTCAAGCT+TGG | 0.571160 | 1.1:+15832095 | None:intergenic |
| TGAAATTGCAATAAAATGTG+AGG | 0.573293 | 1.1:-15831275 | MS.gene33602:CDS |
| ATCATCAACATCTTCAGCAC+AGG | 0.574007 | 1.1:+15833628 | None:intergenic |
| AGGAAGAAAATCTAACTGAC+GGG | 0.576645 | 1.1:-15833328 | MS.gene33602:CDS |
| GCCCATGAGTCGGAACAACT+TGG | 0.576916 | 1.1:+15831916 | None:intergenic |
| AAATCTAACTGACGGGTCGA+GGG | 0.578105 | 1.1:-15833321 | MS.gene33602:CDS |
| AATAAAATGTGAGGGTCTAG+AGG | 0.579023 | 1.1:-15831266 | MS.gene33602:CDS |
| AGCAATGATTGCTGGACTTG+CGG | 0.580668 | 1.1:+15830604 | None:intergenic |
| AGATCTAAATGACGGGTCAA+GGG | 0.582009 | 1.1:-15833399 | MS.gene33602:CDS |
| ACCTGGCGGAAGAGTTTGAA+AGG | 0.585732 | 1.1:-15831147 | MS.gene33602:CDS |
| GCAATCATTGCTCATGCGGG+TGG | 0.586991 | 1.1:-15830593 | MS.gene33602:CDS |
| AAGGAAGAAAATCTAACTGA+CGG | 0.586993 | 1.1:-15833329 | MS.gene33602:CDS |
| AAGTCTTCCGAGAAGAGTCT+GGG | 0.587082 | 1.1:-15834426 | MS.gene33602:CDS |
| AGAATACTTCTCAGAATGAG+AGG | 0.588629 | 1.1:+15834377 | None:intergenic |
| AATTGGAGGAAGAGATACTC+AGG | 0.589915 | 1.1:-15831042 | MS.gene33602:CDS |
| TGTTAATATACCGAATGGAA+AGG | 0.591354 | 1.1:-15833348 | MS.gene33602:CDS |
| GGTCAACTTATTAGAAGCAG+AGG | 0.594256 | 1.1:-15831428 | MS.gene33602:CDS |
| TAGCGCAGACGCCCATGAGT+CGG | 0.594519 | 1.1:+15831906 | None:intergenic |
| GTTTGAAAGGAAATGTGCAA+AGG | 0.595859 | 1.1:-15831134 | MS.gene33602:CDS |
| TGGAGAAAAGAAAATCAAGC+AGG | 0.595873 | 1.1:-15831002 | MS.gene33602:intron |
| TGCGGCCAAGTGTAAGGACC+TGG | 0.601353 | 1.1:-15831164 | MS.gene33602:CDS |
| AAGCAGAGGTTGAAAAGGAG+AGG | 0.601507 | 1.1:-15831099 | MS.gene33602:CDS |
| AGATGAATGGTTCAGAAACC+AGG | 0.602181 | 1.1:-15831945 | MS.gene33602:CDS |
| GCAAAATGAGGATGAAGCAA+TGG | 0.602511 | 1.1:+15832038 | None:intergenic |
| TACTGAGAGGCTAACTGCGG+TGG | 0.603786 | 1.1:-15831983 | MS.gene33602:CDS |
| TCCAGCAATCATTGCTCATG+CGG | 0.605279 | 1.1:-15830597 | MS.gene33602:CDS |
| GTTCCTCTCCTTATCAACGT+TGG | 0.606642 | 1.1:+15831306 | None:intergenic |
| GAAATTGCAATAAAATGTGA+GGG | 0.607539 | 1.1:-15831274 | MS.gene33602:CDS |
| CAATGACGGATAAGAAGAGA+TGG | 0.607557 | 1.1:-15834461 | MS.gene33602:CDS |
| TGATCTAAATGACGGGTCAG+TGG | 0.607812 | 1.1:-15833474 | MS.gene33602:CDS |
| GAAAAGTGAAGTGTGTATTG+AGG | 0.618639 | 1.1:-15831590 | MS.gene33602:CDS |
| CATAAATGGTGGTTCATCAG+AGG | 0.620066 | 1.1:-15833540 | MS.gene33602:CDS |
| AGAACTGGCGTGATTTGGCA+AGG | 0.622883 | 1.1:+15830421 | None:intergenic |
| AAGCCAACGTTGATAAGGAG+AGG | 0.624711 | 1.1:-15831309 | MS.gene33602:CDS |
| ACTAAAAGGGAAGTTAGAGA+AGG | 0.626479 | 1.1:-15831650 | MS.gene33602:CDS |
| TCAGGAGGACCTAGCACTCG+CGG | 0.635445 | 1.1:-15830729 | MS.gene33602:intron |
| GGTTGCGTCAGACGAAATTG+CGG | 0.636623 | 1.1:-15831182 | MS.gene33602:CDS |
| AATCACGCCAGTTCTGAGAA+GGG | 0.639029 | 1.1:-15830413 | MS.gene33602:CDS |
| CTCATGCGGGTGGAGAGATG+TGG | 0.640653 | 1.1:-15830583 | MS.gene33602:CDS |
| ACTTCTTCTAGGTTGGCTGA+CGG | 0.645634 | 1.1:-15830518 | MS.gene33602:CDS |
| GTCACATCTTCAGTTAAAGG+AGG | 0.646496 | 1.1:-15831566 | MS.gene33602:CDS |
| GGAGGCAGTTCAGAAATTGG+AGG | 0.651234 | 1.1:-15831548 | MS.gene33602:CDS |
| TGAACGTGATATGCGTCAAA+CGG | 0.658530 | 1.1:-15832268 | MS.gene33602:CDS |
| CCAAGCTTGAGTCCGAGTGT+CGG | 0.665994 | 1.1:-15832095 | MS.gene33602:CDS |
| ACTACATGCATCATAAATGG+TGG | 0.667278 | 1.1:-15833551 | MS.gene33602:CDS |
| ATGCGGGTGGAGAGATGTGG+AGG | 0.668639 | 1.1:-15830580 | MS.gene33602:CDS |
| TTTAAAGAAGAAACTTGACA+CGG | 0.699579 | 1.1:-15832514 | MS.gene33602:CDS |
| GGCCAAGTGTAAGGACCTGG+CGG | 0.702161 | 1.1:-15831161 | MS.gene33602:CDS |
| GTCAGTCAGACAGTACTGAG+AGG | 0.704589 | 1.1:-15831996 | MS.gene33602:CDS |
| AGAAAACAATAGCATCTTTG+GGG | 0.712210 | 1.1:-15830685 | MS.gene33602:CDS |
| AAATCGCCTAATGAGCATGG+AGG | 0.744978 | 1.1:-15831476 | MS.gene33602:CDS |
| CAGTACTGAGAGGCTAACTG+CGG | 0.757500 | 1.1:-15831986 | MS.gene33602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTATTTCATAAAAAT+AGG | - | chr1.1:15833886-15833905 | MS.gene33602:intron | 10.0% |
| !! | ATTTCATAAAAATAGGTTAT+TGG | - | chr1.1:15833893-15833912 | MS.gene33602:intron | 15.0% |
| !! | TATAATAATGACATTATAAG+AGG | + | chr1.1:15832100-15832119 | None:intergenic | 15.0% |
| !!! | GTTATATTTTGCTTTTATTT+TGG | - | chr1.1:15833959-15833978 | MS.gene33602:intron | 15.0% |
| !!! | TTAGAATTATTTTCTTACAT+TGG | - | chr1.1:15832132-15832151 | MS.gene33602:CDS | 15.0% |
| !! | AATAACATCCAAGATATTAT+AGG | - | chr1.1:15833918-15833937 | MS.gene33602:intron | 20.0% |
| !! | AATTTCATTTATTTCACGTA+TGG | - | chr1.1:15830529-15830548 | MS.gene33602:CDS | 20.0% |
| !! | ATATCAAACCTATAATATCT+TGG | + | chr1.1:15833929-15833948 | None:intergenic | 20.0% |
| !! | TTATCATTAGAAATCAAACT+CGG | - | chr1.1:15830974-15830993 | MS.gene33602:intron | 20.0% |
| !! | TTCTTTCGATTTCAAATATA+AGG | + | chr1.1:15834005-15834024 | None:intergenic | 20.0% |
| ! | AAAAAGATGATCTAAATGAC+GGG | - | chr1.1:15831330-15831349 | MS.gene33602:CDS | 25.0% |
| ! | AAAACAATATATCCAGGAAA+TGG | + | chr1.1:15832183-15832202 | None:intergenic | 25.0% |
| ! | AGGAAGAAGTTATTACTTAA+CGG | - | chr1.1:15830933-15830952 | MS.gene33602:intron | 25.0% |
| ! | ATATTGCTTTCTGTAATTCT+CGG | - | chr1.1:15831635-15831654 | MS.gene33602:CDS | 25.0% |
| ! | CAATTAAGATATCATCAGAT+TGG | + | chr1.1:15830609-15830628 | None:intergenic | 25.0% |
| ! | GAAAAAGATGATCTAAATGA+CGG | - | chr1.1:15831329-15831348 | MS.gene33602:CDS | 25.0% |
| ! | GAAATTGCAATAAAATGTGA+GGG | - | chr1.1:15833537-15833556 | MS.gene33602:CDS | 25.0% |
| ! | GCTATTGTTAATATATCGAA+TGG | - | chr1.1:15831383-15831402 | MS.gene33602:CDS | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr1.1:15832006-15832025 | MS.gene33602:CDS | 25.0% |
| ! | TAGGTTTGATATCATTAACT+AGG | - | chr1.1:15833937-15833956 | MS.gene33602:intron | 25.0% |
| ! | TATTATTAACATACCTGCTA+TGG | + | chr1.1:15831600-15831619 | None:intergenic | 25.0% |
| ! | TGAAATTGCAATAAAATGTG+AGG | - | chr1.1:15833536-15833555 | MS.gene33602:CDS | 25.0% |
| ! | TTCTCTTAAAATAGATCTGA+TGG | - | chr1.1:15832987-15833006 | MS.gene33602:intron | 25.0% |
| ! | TTTAAAGAAGAAACTTGACA+CGG | - | chr1.1:15832297-15832316 | MS.gene33602:CDS | 25.0% |
| ! | TTTCTATGAAGTATAGTTTG+AGG | + | chr1.1:15833870-15833889 | None:intergenic | 25.0% |
| !! | ATCCTTTTGAATATAGTTAC+TGG | - | chr1.1:15830685-15830704 | MS.gene33602:CDS | 25.0% |
| !! | TCCTTTTGAATATAGTTACT+GGG | - | chr1.1:15830686-15830705 | MS.gene33602:CDS | 25.0% |
| !!! | TATTGTTTGCTTTGATTTGT+AGG | + | chr1.1:15833313-15833332 | None:intergenic | 25.0% |
| !!! | TCTATTTTAAGAGAACTTGA+TGG | + | chr1.1:15832982-15833001 | None:intergenic | 25.0% |
| !!! | TTGAAGTATCTAATTTGTTC+TGG | + | chr1.1:15832507-15832526 | None:intergenic | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | + | chr1.1:15832046-15832065 | None:intergenic | 30.0% | |
| AAGAAATTGCAATGAAGTGT+AGG | - | chr1.1:15833745-15833764 | MS.gene33602:intron | 30.0% | |
| AAGGAAGAAAATCTAACTGA+CGG | - | chr1.1:15831482-15831501 | MS.gene33602:CDS | 30.0% | |
| AATGACATTATAAGAGGTAG+AGG | + | chr1.1:15832094-15832113 | None:intergenic | 30.0% | |
| ACCCAGTAACTATATTCAAA+AGG | + | chr1.1:15830690-15830709 | None:intergenic | 30.0% | |
| ACGACACTAACTTAATAACT+TGG | + | chr1.1:15830581-15830600 | None:intergenic | 30.0% | |
| AGAAAACAATAGCATCTTTG+GGG | - | chr1.1:15834126-15834145 | MS.gene33602:intron | 30.0% | |
| AGAAATTGCAATGAAGTGTA+GGG | - | chr1.1:15833746-15833765 | MS.gene33602:intron | 30.0% | |
| AGCAAATGGATGAACTAAAA+GGG | - | chr1.1:15833148-15833167 | MS.gene33602:intron | 30.0% | |
| ATATCCAAGAAAGGATAGAA+TGG | + | chr1.1:15831694-15831713 | None:intergenic | 30.0% | |
| ATTACCATTCTATCCTTTCT+TGG | - | chr1.1:15831687-15831706 | MS.gene33602:CDS | 30.0% | |
| ATTCTTGAATTGATCAAGCT+CGG | + | chr1.1:15832935-15832954 | None:intergenic | 30.0% | |
| CAGAAAACAATAGCATCTTT+GGG | - | chr1.1:15834125-15834144 | MS.gene33602:intron | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | + | chr1.1:15832055-15832074 | None:intergenic | 30.0% | |
| CTCAATAAGACTAGAACAAA+GGG | + | chr1.1:15832225-15832244 | None:intergenic | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | - | chr1.1:15832053-15832072 | MS.gene33602:CDS | 30.0% | |
| GAAAAGAAGATCTAAATGAC+GGG | - | chr1.1:15831405-15831424 | MS.gene33602:CDS | 30.0% | |
| GAAAGAGTTAGAAAGCAAAT+CGG | - | chr1.1:15833461-15833480 | MS.gene33602:CDS | 30.0% | |
| GAAAGATTATCTGTGTTCTT+TGG | - | chr1.1:15830470-15830489 | MS.gene33602:CDS | 30.0% | |
| GCCTAAGCAAACAAATAAAA+AGG | + | chr1.1:15832248-15832267 | None:intergenic | 30.0% | |
| GCTATTGTTAATATACCGAA+TGG | - | chr1.1:15831458-15831477 | MS.gene33602:CDS | 30.0% | |
| GGAAAAGAAGATCTAAATGA+CGG | - | chr1.1:15831404-15831423 | MS.gene33602:CDS | 30.0% | |
| TGATATTACGATATTCACAC+AGG | + | chr1.1:15830797-15830816 | None:intergenic | 30.0% | |
| TGTCATTAAAACTTGAAAGC+AGG | - | chr1.1:15831097-15831116 | MS.gene33602:CDS | 30.0% | |
| TGTTAATATACCGAATGGAA+AGG | - | chr1.1:15831463-15831482 | MS.gene33602:CDS | 30.0% | |
| TTTATTTGTTTGCTTAGGCT+GGG | - | chr1.1:15832249-15832268 | MS.gene33602:CDS | 30.0% | |
| ! | AGATTTTCTTCCTTTCCATT+CGG | + | chr1.1:15831476-15831495 | None:intergenic | 30.0% |
| ! | AGTTATTACTTAACGGATGT+TGG | - | chr1.1:15830940-15830959 | MS.gene33602:intron | 30.0% |
| ! | CATTTGATCTTTTCTATGTC+AGG | - | chr1.1:15834064-15834083 | MS.gene33602:intron | 30.0% |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr1.1:15832063-15832082 | MS.gene33602:CDS | 30.0% |
| ! | TCATGTACCACATTTTTCTT+AGG | - | chr1.1:15830767-15830786 | MS.gene33602:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr1.1:15832002-15832021 | None:intergenic | 30.0% |
| !! | GCCTTTTTATTTGTTTGCTT+AGG | - | chr1.1:15832244-15832263 | MS.gene33602:CDS | 30.0% |
| !! | TTTTATTTGTTTGCTTAGGC+TGG | - | chr1.1:15832248-15832267 | MS.gene33602:CDS | 30.0% |
| !!! | TTCCAATTCGTGAGTTTTTT+CGG | + | chr1.1:15832446-15832465 | None:intergenic | 30.0% |
| AACAAAGGGAGAAAAAGAAG+AGG | + | chr1.1:15832211-15832230 | None:intergenic | 35.0% | |
| AATAAAATGTGAGGGTCTAG+AGG | - | chr1.1:15833545-15833564 | MS.gene33602:CDS | 35.0% | |
| ACTAAAAGGGAAGTTAGAGA+AGG | - | chr1.1:15833161-15833180 | MS.gene33602:intron | 35.0% | |
| ACTACATGCATCATAAATGG+TGG | - | chr1.1:15831260-15831279 | MS.gene33602:CDS | 35.0% | |
| AGAATACTTCTCAGAATGAG+AGG | + | chr1.1:15830437-15830456 | None:intergenic | 35.0% | |
| AGGAAGAAAATCTAACTGAC+GGG | - | chr1.1:15831483-15831502 | MS.gene33602:CDS | 35.0% | |
| AGGCATACCTAAGAAAAATG+TGG | + | chr1.1:15830777-15830796 | None:intergenic | 35.0% | |
| AGTTAGGTTAGGACTTAGAT+AGG | - | chr1.1:15831868-15831887 | MS.gene33602:CDS | 35.0% | |
| ATCACGTTCAACAGAAGATT+TGG | + | chr1.1:15832533-15832552 | None:intergenic | 35.0% | |
| ATCCTTTCTTGGATATGTGT+TGG | - | chr1.1:15831698-15831717 | MS.gene33602:CDS | 35.0% | |
| ATGAGGAGAAACTTAGGATT+TGG | + | chr1.1:15831842-15831861 | None:intergenic | 35.0% | |
| ATGATGCATGTAGTAGGTAA+AGG | + | chr1.1:15831254-15831273 | None:intergenic | 35.0% | |
| ATGGTTAGAGACAGAGAATA+TGG | - | chr1.1:15832570-15832589 | MS.gene33602:intron | 35.0% | |
| ATTAGAAGCCAACGTTGATA+AGG | - | chr1.1:15833497-15833516 | MS.gene33602:CDS | 35.0% | |
| CAGCAAATGGATGAACTAAA+AGG | - | chr1.1:15833147-15833166 | MS.gene33602:intron | 35.0% | |
| CATTGCAATTTCTTCAGACA+TGG | + | chr1.1:15833739-15833758 | None:intergenic | 35.0% | |
| CCAGAAAACAATAGCATCTT+TGG | - | chr1.1:15834124-15834143 | MS.gene33602:intron | 35.0% | |
| CCATTTATGAGGAGAAACTT+AGG | + | chr1.1:15831848-15831867 | None:intergenic | 35.0% | |
| CCATTTATGATGCATGTAGT+AGG | + | chr1.1:15831260-15831279 | None:intergenic | 35.0% | |
| CCTAAGTTTCTCCTCATAAA+TGG | - | chr1.1:15831845-15831864 | MS.gene33602:CDS | 35.0% | |
| CCTACTACATGCATCATAAA+TGG | - | chr1.1:15831257-15831276 | MS.gene33602:CDS | 35.0% | |
| CTAACCTAACTCCATTTATG+AGG | + | chr1.1:15831859-15831878 | None:intergenic | 35.0% | |
| CTAGGAAAGATAACTAACTG+TGG | + | chr1.1:15830905-15830924 | None:intergenic | 35.0% | |
| CTCATAAATGGAGTTAGGTT+AGG | - | chr1.1:15831857-15831876 | MS.gene33602:CDS | 35.0% | |
| GAAAAGAAAATCAAGCAGGT+TGG | - | chr1.1:15833813-15833832 | MS.gene33602:intron | 35.0% | |
| GAAAAGTGAAGTGTGTATTG+AGG | - | chr1.1:15833221-15833240 | MS.gene33602:intron | 35.0% | |
| GAAAATCAGAACTGTTGAGA+GGG | - | chr1.1:15832630-15832649 | MS.gene33602:intron | 35.0% | |
| GAAGAAAAGACCAAAAGAGT+TGG | - | chr1.1:15830843-15830862 | MS.gene33602:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | - | chr1.1:15832041-15832060 | MS.gene33602:CDS | 35.0% | |
| GATGGCAAAACAATATATCC+AGG | + | chr1.1:15832189-15832208 | None:intergenic | 35.0% | |
| GCTCAATAAGACTAGAACAA+AGG | + | chr1.1:15832226-15832245 | None:intergenic | 35.0% | |
| GGTAGATGAAAATGGAGAAA+AGG | - | chr1.1:15831292-15831311 | MS.gene33602:CDS | 35.0% | |
| GTATCAAAGGAAGCTTCTAA+TGG | - | chr1.1:15831122-15831141 | MS.gene33602:CDS | 35.0% | |
| GTTAGAAGCAGAGATTGTTA+AGG | - | chr1.1:15833602-15833621 | MS.gene33602:CDS | 35.0% | |
| GTTAGGTTAGGACTTAGATA+GGG | - | chr1.1:15831869-15831888 | MS.gene33602:CDS | 35.0% | |
| GTTTGAAAGGAAATGTGCAA+AGG | - | chr1.1:15833677-15833696 | MS.gene33602:CDS | 35.0% | |
| GTTTGTATGATTCCATTTCC+TGG | - | chr1.1:15832168-15832187 | MS.gene33602:CDS | 35.0% | |
| TAATGTCAATGCCAAAGACT+TGG | - | chr1.1:15831544-15831563 | MS.gene33602:CDS | 35.0% | |
| TACCAACACATATCCAAGAA+AGG | + | chr1.1:15831703-15831722 | None:intergenic | 35.0% | |
| TCATCAGAGGTAGATGAAAA+TGG | - | chr1.1:15831284-15831303 | MS.gene33602:CDS | 35.0% | |
| TGAAAATCAGAACTGTTGAG+AGG | - | chr1.1:15832629-15832648 | MS.gene33602:intron | 35.0% | |
| TGAAATTGCGATGAAGTGTA+AGG | - | chr1.1:15833431-15833450 | MS.gene33602:CDS | 35.0% | |
| TGGAGAAAAGAAAATCAAGC+AGG | - | chr1.1:15833809-15833828 | MS.gene33602:intron | 35.0% | |
| TGTGATAACCTCAAGATGAA+TGG | - | chr1.1:15832853-15832872 | MS.gene33602:intron | 35.0% | |
| TTCGTTGTCAACGCATTTAT+CGG | + | chr1.1:15833094-15833113 | None:intergenic | 35.0% | |
| TTCTCCTCATAAATGGAGTT+AGG | - | chr1.1:15831852-15831871 | MS.gene33602:CDS | 35.0% | |
| TTTCTGAACCATTCATCTTG+AGG | + | chr1.1:15832864-15832883 | None:intergenic | 35.0% | |
| ! | ATGCTGTTTAACCAAGTCTT+TGG | + | chr1.1:15831558-15831577 | None:intergenic | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr1.1:15832022-15832041 | None:intergenic | 35.0% |
| ! | CCAAAGATGCTATTGTTTTC+TGG | + | chr1.1:15834127-15834146 | None:intergenic | 35.0% |
| ! | GATGGACGATTTTCTTGAAA+TGG | - | chr1.1:15833005-15833024 | MS.gene33602:intron | 35.0% |
| ! | TATCTTTCCTAGACTTGTTC+AGG | - | chr1.1:15830913-15830932 | MS.gene33602:intron | 35.0% |
| ! | TCTTGGATATGTGTTGGTAT+TGG | - | chr1.1:15831704-15831723 | MS.gene33602:CDS | 35.0% |
| ! | TGCTTCTAATAAGTTGACCT+TGG | + | chr1.1:15833382-15833401 | None:intergenic | 35.0% |
| ! | TTGATCTTTTCTATGTCAGG+AGG | - | chr1.1:15834067-15834086 | MS.gene33602:intron | 35.0% |
| !! | AGGTGTTGATGCAATTTCAT+CGG | + | chr1.1:15831234-15831253 | None:intergenic | 35.0% |
| !! | ATTAGAAGCAGAGGTTGATA+AGG | - | chr1.1:15833392-15833411 | MS.gene33602:CDS | 35.0% |
| !! | CAAAAGAGTTGGTCTTGAAT+CGG | - | chr1.1:15830854-15830873 | MS.gene33602:intron | 35.0% |
| !! | TGAGAAGTATTCTGATGAAC+AGG | - | chr1.1:15830444-15830463 | MS.gene33602:CDS | 35.0% |
| !! | TGCTATTGTTTTCTGGCATT+CGG | + | chr1.1:15834120-15834139 | None:intergenic | 35.0% |
| !! | TTGAAAGCAGGAAGTATCAA+AGG | - | chr1.1:15831109-15831128 | MS.gene33602:CDS | 35.0% |
| AAAAGGGAAGTTAGAGAAGG+TGG | - | chr1.1:15833164-15833183 | MS.gene33602:intron | 40.0% | |
| AAAGGAGGCAGTTCAGAAAT+TGG | - | chr1.1:15833260-15833279 | MS.gene33602:CDS | 40.0% | |
| AAGAAAAAAGCTGAGTGAGC+AGG | + | chr1.1:15831055-15831074 | None:intergenic | 40.0% | |
| AAGCAGAGATTGTTAAGGAG+AGG | - | chr1.1:15833607-15833626 | MS.gene33602:CDS | 40.0% | |
| AAGGGAGAAAAAGAAGAGGA+TGG | + | chr1.1:15832207-15832226 | None:intergenic | 40.0% | |
| AATGAAGTGTAGGGAATTGG+AGG | - | chr1.1:15833755-15833774 | MS.gene33602:intron | 40.0% | |
| AATTGGAGGAAGAGATACTC+AGG | - | chr1.1:15833769-15833788 | MS.gene33602:intron | 40.0% | |
| ACTTCTTCCTGAACAAGTCT+AGG | + | chr1.1:15830923-15830942 | None:intergenic | 40.0% | |
| AGAAAAAAGCTGAGTGAGCA+GGG | + | chr1.1:15831054-15831073 | None:intergenic | 40.0% | |
| AGAAAATCGCCTAATGAGCA+TGG | - | chr1.1:15833332-15833351 | MS.gene33602:CDS | 40.0% | |
| AGAAATCAAACTCGGCAATC+CGG | - | chr1.1:15830982-15831001 | MS.gene33602:intron | 40.0% | |
| AGATGAATGGTTCAGAAACC+AGG | - | chr1.1:15832866-15832885 | MS.gene33602:intron | 40.0% | |
| AGCAGAGATTGTTAAGGAGA+GGG | - | chr1.1:15833608-15833627 | MS.gene33602:CDS | 40.0% | |
| AGCCGAAAAAACTCACGAAT+TGG | - | chr1.1:15832441-15832460 | MS.gene33602:CDS | 40.0% | |
| AGTGACTGTTGAATAGAGAC+CGG | + | chr1.1:15831803-15831822 | None:intergenic | 40.0% | |
| ATATGCGTCAAACGGTTGAA+TGG | - | chr1.1:15832551-15832570 | MS.gene33602:intron | 40.0% | |
| ATATTTGTTCAGGGATGCAC+CGG | + | chr1.1:15834324-15834343 | None:intergenic | 40.0% | |
| ATCATCAACATCTTCAGCAC+AGG | + | chr1.1:15831186-15831205 | None:intergenic | 40.0% | |
| ATGTGGAGGATGCATTCAAA+TGG | - | chr1.1:15834245-15834264 | MS.gene33602:intron | 40.0% | |
| CATAAATGGTGGTTCATCAG+AGG | - | chr1.1:15831271-15831290 | MS.gene33602:CDS | 40.0% | |
| CGGATAAGAAGAGATGGTTA+TGG | - | chr1.1:15830356-15830375 | MS.gene33602:CDS | 40.0% | |
| CTGCGTGTCTACGAATTATT+CGG | - | chr1.1:15831736-15831755 | MS.gene33602:CDS | 40.0% | |
| CTTAGAAGCAGAGGTTGAAA+AGG | - | chr1.1:15833707-15833726 | MS.gene33602:intron | 40.0% | |
| GAATGCTAGCAGTGTCAATA+AGG | + | chr1.1:15834187-15834206 | None:intergenic | 40.0% | |
| GATAGAGTCACTCATCTAGA+TGG | - | chr1.1:15832346-15832365 | MS.gene33602:CDS | 40.0% | |
| GCAAAATGAGGATGAAGCAA+TGG | + | chr1.1:15832776-15832795 | None:intergenic | 40.0% | |
| GCATGAGATCCTAGTTCAAT+CGG | - | chr1.1:15832600-15832619 | MS.gene33602:intron | 40.0% | |
| GGAGTCACATCTTCAGTTAA+AGG | - | chr1.1:15833242-15833261 | MS.gene33602:CDS | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | + | chr1.1:15832034-15832053 | None:intergenic | 40.0% | |
| GGTCAACTTATTAGAAGCAG+AGG | - | chr1.1:15833383-15833402 | MS.gene33602:CDS | 40.0% | |
| GTAGAAGAAGACGATGAAAG+TGG | + | chr1.1:15834359-15834378 | None:intergenic | 40.0% | |
| GTCACATCTTCAGTTAAAGG+AGG | - | chr1.1:15833245-15833264 | MS.gene33602:CDS | 40.0% | |
| GTGTCGGAGAATGAAGATAA+TGG | - | chr1.1:15832732-15832751 | MS.gene33602:intron | 40.0% | |
| TATCTTCATTCTCCGACACT+CGG | + | chr1.1:15832731-15832750 | None:intergenic | 40.0% | |
| TGAACGTGATATGCGTCAAA+CGG | - | chr1.1:15832543-15832562 | MS.gene33602:CDS | 40.0% | |
| TGACATCATGACTCAGCAAA+TGG | - | chr1.1:15833134-15833153 | MS.gene33602:intron | 40.0% | |
| TGCAATGAAGTGTAGGGAAT+TGG | - | chr1.1:15833752-15833771 | MS.gene33602:intron | 40.0% | |
| TGCATCCCTGAACAAATATG+AGG | - | chr1.1:15834325-15834344 | MS.gene33602:intron | 40.0% | |
| TGCTTTCTAACTCTTTCTCC+AGG | + | chr1.1:15833458-15833477 | None:intergenic | 40.0% | |
| TTTCACGTATGGAAAACACG+AGG | - | chr1.1:15830540-15830559 | MS.gene33602:CDS | 40.0% | |
| ! | AACTTGATGGATCAGCTTGT+CGG | + | chr1.1:15832969-15832988 | None:intergenic | 40.0% |
| ! | ATATGCAATGTGTCGTTGTC+TGG | + | chr1.1:15830748-15830767 | None:intergenic | 40.0% |
| ! | CGATTCAAGACCAACTCTTT+TGG | + | chr1.1:15830856-15830875 | None:intergenic | 40.0% |
| ! | TCATCTAGATGGAGCACTTA+AGG | - | chr1.1:15832357-15832376 | MS.gene33602:CDS | 40.0% |
| !! | AAGATCTAAATGACGGGTCA+AGG | - | chr1.1:15831411-15831430 | MS.gene33602:CDS | 40.0% |
| !! | AGATCTAAATGACGGGTCAA+GGG | - | chr1.1:15831412-15831431 | MS.gene33602:CDS | 40.0% |
| !! | GGTGTTGATGCAATTTCATC+GGG | + | chr1.1:15831233-15831252 | None:intergenic | 40.0% |
| !!! | TACAGCTTTTGAGGTGACAT+CGG | + | chr1.1:15831162-15831181 | None:intergenic | 40.0% |
| !!! | TTCGTGAGTTTTTTCGGCTA+CGG | + | chr1.1:15832440-15832459 | None:intergenic | 40.0% |
| AAAGTCTTCCGAGAAGAGTC+TGG | - | chr1.1:15830384-15830403 | MS.gene33602:CDS | 45.0% | |
| AAATCAAACTCGGCAATCCG+GGG | - | chr1.1:15830984-15831003 | MS.gene33602:intron | 45.0% | |
| AAATCGCCTAATGAGCATGG+AGG | - | chr1.1:15833335-15833354 | MS.gene33602:CDS | 45.0% | |
| AACCAAGTTGTTCCGACTCA+TGG | - | chr1.1:15832893-15832912 | MS.gene33602:intron | 45.0% | |
| AAGCAGAGGTTGAAAAGGAG+AGG | - | chr1.1:15833712-15833731 | MS.gene33602:intron | 45.0% | |
| AAGTCTTCCGAGAAGAGTCT+GGG | - | chr1.1:15830385-15830404 | MS.gene33602:CDS | 45.0% | |
| AATTCGACCCTTCTCAGAAC+TGG | + | chr1.1:15834408-15834427 | None:intergenic | 45.0% | |
| ACACAAGTGTTCAGTGCACA+AGG | + | chr1.1:15831027-15831046 | None:intergenic | 45.0% | |
| ACCAAGTTGTTCCGACTCAT+GGG | - | chr1.1:15832894-15832913 | MS.gene33602:intron | 45.0% | |
| AGACAGAGAATATGGCTCTC+AGG | - | chr1.1:15832578-15832597 | MS.gene33602:intron | 45.0% | |
| AGACTCCACTTCTTCTAGGT+TGG | - | chr1.1:15834286-15834305 | MS.gene33602:intron | 45.0% | |
| AGAGAGACTCCACTTCTTCT+AGG | - | chr1.1:15834282-15834301 | MS.gene33602:intron | 45.0% | |
| AGCAATGATTGCTGGACTTG+CGG | + | chr1.1:15834210-15834229 | None:intergenic | 45.0% | |
| AGCAGAGGTTGAAAAGGAGA+GGG | - | chr1.1:15833713-15833732 | MS.gene33602:intron | 45.0% | |
| AGGAAGGTGAATTCAGTAGC+AGG | + | chr1.1:15830725-15830744 | None:intergenic | 45.0% | |
| GAAAGCAAATCGGCAATGCT+TGG | - | chr1.1:15833471-15833490 | MS.gene33602:CDS | 45.0% | |
| GAAATCAAACTCGGCAATCC+GGG | - | chr1.1:15830983-15831002 | MS.gene33602:intron | 45.0% | |
| GAAATCTCTGGCTACACTTG+AGG | - | chr1.1:15834157-15834176 | MS.gene33602:intron | 45.0% | |
| GAAGAAGTGGAGTCTCTCTT+AGG | + | chr1.1:15834281-15834300 | None:intergenic | 45.0% | |
| GAGAGATTCGACGCAAAATG+AGG | + | chr1.1:15832788-15832807 | None:intergenic | 45.0% | |
| GGAAGGTGAATTCAGTAGCA+GGG | + | chr1.1:15830724-15830743 | None:intergenic | 45.0% | |
| GTTCCTCTCCTTATCAACGT+TGG | + | chr1.1:15833508-15833527 | None:intergenic | 45.0% | |
| TCAGCTCTTCCGATTGAACT+AGG | + | chr1.1:15832612-15832631 | None:intergenic | 45.0% | |
| TCCAGCAATCATTGCTCATG+CGG | - | chr1.1:15834214-15834233 | MS.gene33602:intron | 45.0% | |
| TCTCCATACAAGCTAGCTGT+TGG | + | chr1.1:15833795-15833814 | None:intergenic | 45.0% | |
| TGCTTGCTTTCTGTATCGTC+CGG | - | chr1.1:15831781-15831800 | MS.gene33602:CDS | 45.0% | |
| TGTTTGCTTAGGCTGGGAAA+AGG | - | chr1.1:15832255-15832274 | MS.gene33602:CDS | 45.0% | |
| TTCTAGCCGAATACCACTCT+TGG | + | chr1.1:15834456-15834475 | None:intergenic | 45.0% | |
| TTCTCAGAACTGGCGTGATT+TGG | + | chr1.1:15834398-15834417 | None:intergenic | 45.0% | |
| ! | AAAATCTAACTGACGGGTCG+AGG | - | chr1.1:15831489-15831508 | MS.gene33602:CDS | 45.0% |
| ! | AAATCTAACTGACGGGTCGA+GGG | - | chr1.1:15831490-15831509 | MS.gene33602:CDS | 45.0% |
| ! | AAGCCAACGTTGATAAGGAG+AGG | - | chr1.1:15833502-15833521 | MS.gene33602:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1.1:15831953-15831972 | MS.gene33602:CDS | 45.0% |
| ! | ACTTCTTCTAGGTTGGCTGA+CGG | - | chr1.1:15834293-15834312 | MS.gene33602:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1.1:15831952-15831971 | MS.gene33602:CDS | 45.0% |
| ! | GAGCACTTAAGGAGTGTGTT+AGG | - | chr1.1:15832368-15832387 | MS.gene33602:CDS | 45.0% |
| ! | GGTTGACTTCTTAGAAGCAG+AGG | - | chr1.1:15833698-15833717 | MS.gene33602:intron | 45.0% |
| ! | TGTGTGAGTACTGTAAACCC+CGG | + | chr1.1:15831004-15831023 | None:intergenic | 45.0% |
| ! | TTTTTCTCGCGAACCAAGAG+TGG | - | chr1.1:15834440-15834459 | MS.gene33602:CDS | 45.0% |
| !! | AAATCACGCCAGTTCTGAGA+AGG | - | chr1.1:15834397-15834416 | MS.gene33602:CDS | 45.0% |
| !! | AAGCAGCTTTGTTGAGGAGT+TGG | - | chr1.1:15833062-15833081 | MS.gene33602:intron | 45.0% |
| !! | AATCACGCCAGTTCTGAGAA+GGG | - | chr1.1:15834398-15834417 | MS.gene33602:CDS | 45.0% |
| !! | AGTTCTGAGAAGGGTCGAAT+TGG | - | chr1.1:15834407-15834426 | MS.gene33602:CDS | 45.0% |
| !! | TGATCTAAATGACGGGTCAG+TGG | - | chr1.1:15831337-15831356 | MS.gene33602:CDS | 45.0% |
| !!! | ACAGCTTTTGAGGTGACATC+GGG | + | chr1.1:15831161-15831180 | None:intergenic | 45.0% |
| AACTTGACACGGTCACTCTC+AGG | - | chr1.1:15832308-15832327 | MS.gene33602:CDS | 50.0% | |
| ACCTGGCGGAAGAGTTTGAA+AGG | - | chr1.1:15833664-15833683 | MS.gene33602:CDS | 50.0% | |
| ACTAGCTGTCTCAGCTGCTT+GGG | + | chr1.1:15832665-15832684 | None:intergenic | 50.0% | |
| AGCTTCACCCAGACTCTTCT+CGG | + | chr1.1:15830395-15830414 | None:intergenic | 50.0% | |
| AGTCTGCCTCCATGCTCATT+AGG | + | chr1.1:15833344-15833363 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1.1:15831954-15831973 | None:intergenic | 50.0% | |
| CCAGCAATCATTGCTCATGC+GGG | - | chr1.1:15834215-15834234 | MS.gene33602:intron | 50.0% | |
| CGAAATTGCGGCCAAGTGTA+AGG | - | chr1.1:15833641-15833660 | MS.gene33602:CDS | 50.0% | |
| CGCGAACCAAGAGTGGTATT+CGG | - | chr1.1:15834447-15834466 | MS.gene33602:CDS | 50.0% | |
| CTCTCACACGCTATCTTCCA+AGG | - | chr1.1:15833362-15833381 | MS.gene33602:CDS | 50.0% | |
| CTGCTTGCGTTCTTAGTCTC+GGG | + | chr1.1:15833048-15833067 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1.1:15831957-15831976 | MS.gene33602:CDS | 50.0% | |
| GCAATGATTGCTGGACTTGC+GGG | + | chr1.1:15834209-15834228 | None:intergenic | 50.0% | |
| GCTAGAGAGCAAACGTGCAA+AGG | - | chr1.1:15833572-15833591 | MS.gene33602:CDS | 50.0% | |
| GCTGCTTGCGTTCTTAGTCT+CGG | + | chr1.1:15833049-15833068 | None:intergenic | 50.0% | |
| GGAACAACTTGGTTCACACC+TGG | + | chr1.1:15832887-15832906 | None:intergenic | 50.0% | |
| GGAGGCAGTTCAGAAATTGG+AGG | - | chr1.1:15833263-15833282 | MS.gene33602:CDS | 50.0% | |
| GGGGAATCAGCTGAAATCTC+TGG | - | chr1.1:15834145-15834164 | MS.gene33602:intron | 50.0% | |
| GGTTGCGTCAGACGAAATTG+CGG | - | chr1.1:15833629-15833648 | MS.gene33602:CDS | 50.0% | |
| GTCAGCCAACCTAGAAGAAG+TGG | + | chr1.1:15834294-15834313 | None:intergenic | 50.0% | |
| GTTGCTGAAGAAGCCATAGC+AGG | - | chr1.1:15831584-15831603 | MS.gene33602:CDS | 50.0% | |
| TACTAGCTGTCTCAGCTGCT+TGG | + | chr1.1:15832666-15832685 | None:intergenic | 50.0% | |
| TCCTTTCAAACTCTTCCGCC+AGG | + | chr1.1:15833668-15833687 | None:intergenic | 50.0% | |
| TGCGATGAAGTGTAAGGACC+TGG | - | chr1.1:15833437-15833456 | MS.gene33602:CDS | 50.0% | |
| ! | AGAACTGGCGTGATTTGGCA+AGG | + | chr1.1:15834393-15834412 | None:intergenic | 50.0% |
| ! | AGCACAGGCTACAGCTTTTG+AGG | + | chr1.1:15831171-15831190 | None:intergenic | 50.0% |
| ! | AGGCCAACAGCTAGCTTGTA+TGG | - | chr1.1:15833789-15833808 | MS.gene33602:intron | 50.0% |
| ! | ATGTGTCGTTGTCTGGAGGA+AGG | + | chr1.1:15830741-15830760 | None:intergenic | 50.0% |
| ! | CAGTACTGAGAGGCTAACTG+CGG | - | chr1.1:15832825-15832844 | MS.gene33602:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1.1:15831951-15831970 | MS.gene33602:CDS | 50.0% |
| ! | GTCAGTCAGACAGTACTGAG+AGG | - | chr1.1:15832815-15832834 | MS.gene33602:intron | 50.0% |
| ! | TGCAATGTGTCGTTGTCTGG+AGG | + | chr1.1:15830745-15830764 | None:intergenic | 50.0% |
| !! | GAACGCAAGCAGCTTTGTTG+AGG | - | chr1.1:15833056-15833075 | MS.gene33602:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1.1:15831965-15831984 | MS.gene33602:CDS | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1.1:15831966-15831985 | None:intergenic | 55.0% | |
| CCAAGCTTGAGTCCGAGTGT+CGG | - | chr1.1:15832716-15832735 | MS.gene33602:intron | 55.0% | |
| CCCGCATGAGCAATGATTGC+TGG | + | chr1.1:15834218-15834237 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1.1:15831959-15831978 | None:intergenic | 55.0% | |
| CTGGCATTCGGCAAGCTTTC+CGG | + | chr1.1:15834108-15834127 | None:intergenic | 55.0% | |
| CTGGGTGAAGCTGAGAGTTC+AGG | - | chr1.1:15830403-15830422 | MS.gene33602:CDS | 55.0% | |
| GCAATCATTGCTCATGCGGG+TGG | - | chr1.1:15834218-15834237 | MS.gene33602:intron | 55.0% | |
| GCCCATGAGTCGGAACAACT+TGG | + | chr1.1:15832898-15832917 | None:intergenic | 55.0% | |
| TACTGAGAGGCTAACTGCGG+TGG | - | chr1.1:15832828-15832847 | MS.gene33602:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1.1:15831965-15831984 | None:intergenic | 55.0% | |
| TTCCGCCAGGTCCTTACACT+TGG | + | chr1.1:15833655-15833674 | None:intergenic | 55.0% | |
| ATGCGGGTGGAGAGATGTGG+AGG | - | chr1.1:15834231-15834250 | MS.gene33602:intron | 60.0% | |
| CCGACACTCGGACTCAAGCT+TGG | + | chr1.1:15832719-15832738 | None:intergenic | 60.0% | |
| CTCATGCGGGTGGAGAGATG+TGG | - | chr1.1:15834228-15834247 | MS.gene33602:intron | 60.0% | |
| GGCCAAGTGTAAGGACCTGG+CGG | - | chr1.1:15833650-15833669 | MS.gene33602:CDS | 60.0% | |
| TAGCGCAGACGCCCATGAGT+CGG | + | chr1.1:15832908-15832927 | None:intergenic | 60.0% | |
| TCAGGAGGACCTAGCACTCG+CGG | - | chr1.1:15834082-15834101 | MS.gene33602:intron | 60.0% | |
| TGCGGCCAAGTGTAAGGACC+TGG | - | chr1.1:15833647-15833666 | MS.gene33602:CDS | 60.0% | |
| ! | AGGTTGGCTGACGGTAGCTC+CGG | - | chr1.1:15834302-15834321 | MS.gene33602:intron | 60.0% |
| GAGGACCTAGCACTCGCGGC+CGG | - | chr1.1:15834086-15834105 | MS.gene33602:intron | 70.0% | |
| GCTTTCCGGCCGCGAGTGCT+AGG | + | chr1.1:15834094-15834113 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 15830352 | 15834481 | 15830352 | ID=MS.gene33602 |
| chr1.1 | mRNA | 15830352 | 15834481 | 15830352 | ID=MS.gene33602.t1;Parent=MS.gene33602 |
| chr1.1 | exon | 15834368 | 15834481 | 15834368 | ID=MS.gene33602.t1.exon1;Parent=MS.gene33602.t1 |
| chr1.1 | CDS | 15834368 | 15834481 | 15834368 | ID=cds.MS.gene33602.t1;Parent=MS.gene33602.t1 |
| chr1.1 | exon | 15833228 | 15833714 | 15833228 | ID=MS.gene33602.t1.exon2;Parent=MS.gene33602.t1 |
| chr1.1 | CDS | 15833228 | 15833714 | 15833228 | ID=cds.MS.gene33602.t1;Parent=MS.gene33602.t1 |
| chr1.1 | exon | 15831003 | 15832567 | 15831003 | ID=MS.gene33602.t1.exon3;Parent=MS.gene33602.t1 |
| chr1.1 | CDS | 15831003 | 15832567 | 15831003 | ID=cds.MS.gene33602.t1;Parent=MS.gene33602.t1 |
| chr1.1 | exon | 15830352 | 15830747 | 15830352 | ID=MS.gene33602.t1.exon4;Parent=MS.gene33602.t1 |
| chr1.1 | CDS | 15830352 | 15830747 | 15830352 | ID=cds.MS.gene33602.t1;Parent=MS.gene33602.t1 |
| Gene Sequence |
| Protein sequence |
