AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63019

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63019.t1 MTR_1g030010 92.740 854 38 1 1 854 1 830 0.0 1516
MS.gene63019.t1 MTR_3g096990 40.112 713 351 14 150 814 39 723 2.95e-123 389
MS.gene63019.t1 MTR_8g094760 46.711 456 203 5 169 603 61 497 1.43e-110 352
MS.gene63019.t1 MTR_8g094760 33.333 294 115 10 595 851 377 626 2.19e-20 96.7
MS.gene63019.t1 MTR_8g094760 46.711 456 203 5 169 603 73 509 2.48e-110 352
MS.gene63019.t1 MTR_8g094760 36.150 213 76 6 662 851 463 638 3.07e-20 96.3
MS.gene63019.t1 MTR_3g096990 45.591 465 221 6 161 603 50 504 5.82e-98 319
MS.gene63019.t1 MTR_3g096990 30.822 292 140 9 546 814 377 629 1.74e-18 90.9
MS.gene63019.t1 MTR_3g113290 43.348 233 107 2 160 367 86 318 1.67e-44 174
MS.gene63019.t1 MTR_1g024095 41.880 234 109 2 160 367 67 299 4.84e-42 166
MS.gene63019.t1 MTR_1g024095 41.880 234 109 2 160 367 67 299 5.57e-42 166
MS.gene63019.t1 MTR_5g021810 35.268 224 120 2 169 367 76 299 3.14e-32 134
MS.gene63019.t1 MTR_5g021810 35.268 224 120 2 169 367 77 300 3.18e-32 134
MS.gene63019.t1 MTR_4g094848 37.500 216 110 4 169 359 40 255 2.51e-27 120
MS.gene63019.t1 MTR_5g016830 31.988 322 156 7 171 461 50 339 1.44e-26 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63019.t1 AT1G21810 38.313 723 290 17 182 854 13 629 2.61e-109 349
MS.gene63019.t1 AT1G21810 38.313 723 290 17 182 854 13 629 2.61e-109 349
MS.gene63019.t1 AT3G05270 39.423 624 302 12 157 760 48 615 2.43e-92 303
MS.gene63019.t1 AT3G05270 48.649 74 28 2 3 75 2 66 6.64e-13 72.8
MS.gene63019.t1 AT3G05270 39.423 624 302 12 157 760 48 615 2.43e-92 303
MS.gene63019.t1 AT3G05270 48.649 74 28 2 3 75 2 66 6.64e-13 72.8
MS.gene63019.t1 AT3G05270 39.423 624 302 12 157 760 48 615 2.43e-92 303
MS.gene63019.t1 AT3G05270 48.649 74 28 2 3 75 2 66 6.64e-13 72.8
MS.gene63019.t1 AT1G77580 48.688 343 124 6 162 498 22 318 2.70e-83 280
MS.gene63019.t1 AT1G77580 48.980 343 123 7 162 498 22 318 4.81e-82 279
MS.gene63019.t1 AT1G77580 48.980 343 123 7 162 498 56 352 6.12e-82 280
MS.gene63019.t1 AT1G77580 48.980 343 123 7 162 498 56 352 6.12e-82 280
MS.gene63019.t1 AT1G21810 35.126 595 247 16 310 854 1 506 4.79e-67 232
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G19835 38.636 264 130 4 164 396 61 323 4.53e-42 166
MS.gene63019.t1 AT1G47900 36.260 262 140 3 133 367 78 339 5.45e-38 154
MS.gene63019.t1 AT1G47900 36.260 262 140 3 133 367 78 339 5.45e-38 154
MS.gene63019.t1 AT1G47900 36.260 262 140 3 133 367 78 339 5.53e-38 154
MS.gene63019.t1 AT4G36120 38.667 225 111 2 169 367 76 299 3.36e-36 148
MS.gene63019.t1 AT4G36120 38.667 225 111 2 169 367 76 299 3.36e-36 148
MS.gene63019.t1 AT2G23360 37.624 202 101 2 191 367 51 252 4.60e-24 109

Find 174 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTTGCTTTGATTTGT+AGG 0.158511 1.2:+15778850 None:intergenic
CTGGCATTCGGCAAGCTTTC+CGG 0.169197 1.2:+15778055 None:intergenic
CCAGAAAACAATAGCATCTT+TGG 0.227504 1.2:-15778036 MS.gene63019:CDS
AGCTTTCCTCATATTTGTTC+AGG 0.245451 1.2:+15777829 None:intergenic
CAGCAAATGGATGAACTAAA+AGG 0.264463 1.2:-15779013 MS.gene63019:CDS
AAAGGAGGCAGTTCAGAAAT+TGG 0.278157 1.2:-15778900 MS.gene63019:CDS
AGAGAGACTCCACTTCTTCT+AGG 0.279649 1.2:-15777878 MS.gene63019:CDS
TTCTTTGTCAACGCATTTAT+CGG 0.285448 1.2:+15779069 None:intergenic
CTGTTTAACCAAGTCTTCTT+TGG 0.288311 1.2:+15780602 None:intergenic
CCTACTACATGCATCATAAA+TGG 0.290764 1.2:-15780900 MS.gene63019:CDS
TTGAAGTATCTAATTTGTTC+TGG 0.297055 1.2:+15779656 None:intergenic
TTCTCAGAACTGGCGTGATT+TGG 0.303370 1.2:+15777765 None:intergenic
TCATCAGAGGTAGATGAAAA+TGG 0.339325 1.2:-15780873 MS.gene63019:CDS
ATCACGTTCAACAGAAGATT+TGG 0.341973 1.2:+15779630 None:intergenic
TGCAATGAAGTGTAGGGAAT+TGG 0.368718 1.2:-15778408 MS.gene63019:CDS
TACTAGCTGTCTCAGCTGCT+TGG 0.369218 1.2:+15779497 None:intergenic
CAGAAAACAATAGCATCTTT+GGG 0.371111 1.2:-15778035 MS.gene63019:CDS
GGAGTCACATCTTCAGTTAA+AGG 0.375808 1.2:-15778918 MS.gene63019:CDS
CCGGGTGAAGCTGAGAGTTC+AGG 0.379981 1.2:-15781754 MS.gene63019:CDS
TCATCTAGATGGAGCACTTA+AGG 0.382656 1.2:-15779803 MS.gene63019:CDS
ACTAGCTGTCTCAGCTGCTT+GGG 0.387288 1.2:+15779498 None:intergenic
GAAGAAGTGGAGTCTCTCTT+AGG 0.390406 1.2:+15777882 None:intergenic
CCCGCATGAGCAATGATTGC+TGG 0.393330 1.2:+15777945 None:intergenic
GAATGCTAGCAGTGTCAATA+AGG 0.394242 1.2:+15777976 None:intergenic
AGCAGAGATTGTTAAGGAGA+GGG 0.395136 1.2:-15778552 MS.gene63019:CDS
GTTAGAAGCAGAGATTGTTA+AGG 0.395902 1.2:-15778558 MS.gene63019:CDS
GCAATGATTGCTGGACTTGC+GGG 0.396942 1.2:+15777954 None:intergenic
AGCTTCACCCGGACTCTTCT+CGG 0.405534 1.2:+15781765 None:intergenic
GGTAGATGAAAATGGAGAAA+AGG 0.409058 1.2:-15780865 MS.gene63019:CDS
GCTTTCCGGCCGCGAGTGCT+AGG 0.411337 1.2:+15778069 None:intergenic
AGGCCAACAGCTAGCTTGTA+TGG 0.413438 1.2:-15778371 MS.gene63019:CDS
TGCTTTCTAACTCTTTCTCC+AGG 0.415864 1.2:+15778705 None:intergenic
CTTAGAAGCAGAGGTTGAAA+AGG 0.424596 1.2:-15778453 MS.gene63019:CDS
GATAGAGTCACTCATCTAGA+TGG 0.442078 1.2:-15779814 MS.gene63019:CDS
TTCTAGCCGAATACCACTCT+TGG 0.444679 1.2:+15777707 None:intergenic
CGGATAAGAAGAGATGGTTA+TGG 0.445207 1.2:-15781801 MS.gene63019:CDS
GCTTTCCTCATATTTGTTCA+GGG 0.445685 1.2:+15777830 None:intergenic
AGTTCTGAGAAGGGTCGAAT+TGG 0.445703 1.2:-15777753 MS.gene63019:CDS
ATTAGAAGCCAACGTTGATA+AGG 0.446707 1.2:-15778663 MS.gene63019:CDS
TGAGAAGTATTCTGATGAAC+AGG 0.447757 1.2:-15781713 MS.gene63019:intron
GTATCAAAGGAAGCTTCTAA+TGG 0.451590 1.2:-15781035 MS.gene63019:CDS
AACCAAGTTGTTCCGACTCA+TGG 0.454388 1.2:-15779267 MS.gene63019:CDS
ATTAGAAGCAGAGGTTGATA+AGG 0.454787 1.2:-15778768 MS.gene63019:CDS
GAGCACTTAAGGAGTGTGTT+AGG 0.454819 1.2:-15779792 MS.gene63019:CDS
CGAAATTGCGGCCAAGTGTA+AGG 0.456297 1.2:-15778519 MS.gene63019:CDS
AAAAGGGAAGTTAGAGAAGG+TGG 0.456647 1.2:-15778996 MS.gene63019:CDS
GGTGTTGATGCAATTTCATC+GGG 0.459416 1.2:+15780927 None:intergenic
GGGGAATCAGCTGAAATCTC+TGG 0.459529 1.2:-15778015 MS.gene63019:CDS
AATTCGACCCTTCTCAGAAC+TGG 0.460941 1.2:+15777755 None:intergenic
TGAGCTCTTCCGATTGAACT+AGG 0.465664 1.2:+15779551 None:intergenic
AAAGTCTTCCGAGAAGAGTC+CGG 0.465809 1.2:-15781773 MS.gene63019:CDS
ATGGTTAGAGACAGAGAATA+TGG 0.466296 1.2:-15779590 MS.gene63019:CDS
TATTATTAACATACCTGCTA+TGG 0.467238 1.2:+15780557 None:intergenic
TCCTTTCAAACTCTTCCGCC+AGG 0.469800 1.2:+15778495 None:intergenic
AAGAAATTGCAATGAAGTGT+AGG 0.469994 1.2:-15778415 MS.gene63019:CDS
CGCGAACCAAGAGTGGTATT+CGG 0.471935 1.2:-15777713 MS.gene63019:CDS
AACTTGACACGGTCACTCTC+AGG 0.474253 1.2:-15779852 MS.gene63019:CDS
AAGCAGCTTTGTTGAGGAGT+TGG 0.475100 1.2:-15779098 MS.gene63019:CDS
AGAGTTTCTTCCTTTCCATT+CGG 0.476674 1.2:+15780684 None:intergenic
CATTGCAATTTCTTCAGACA+TGG 0.480327 1.2:+15778424 None:intergenic
TGTTTGCTTAGGCTGGGAAA+AGG 0.481268 1.2:-15779905 MS.gene63019:intron
CTGCTTGCGTTCTTAGTCTC+GGG 0.481931 1.2:+15779115 None:intergenic
TTCTCTTAAAATAGATCTGA+TGG 0.482089 1.2:-15779173 MS.gene63019:CDS
GCTGCTTGCGTTCTTAGTCT+CGG 0.482246 1.2:+15779114 None:intergenic
GAAAGCAAATCGGCAATGCT+TGG 0.488948 1.2:-15778689 MS.gene63019:CDS
GGAAAAGAAGATCTAAATGA+AGG 0.492153 1.2:-15780753 MS.gene63019:CDS
TCTCCATACAAGCTAGCTGT+TGG 0.492340 1.2:+15778368 None:intergenic
ATATGCGTCAAACGGTTGAA+TGG 0.492627 1.2:-15779609 MS.gene63019:CDS
GCATGAGATCCTAGTTCAAT+CGG 0.494988 1.2:-15779560 MS.gene63019:CDS
AGGTGTTGATGCAATTTCAT+CGG 0.499092 1.2:+15780926 None:intergenic
TGCTTCTAATAAGTTGACCT+TGG 0.499199 1.2:+15778781 None:intergenic
TTCCGCCAGGTCCTTACACT+TGG 0.500047 1.2:+15778508 None:intergenic
ATTCTTGAATTGATCAAGCT+CGG 0.500571 1.2:+15779228 None:intergenic
TGACATCATGACTCAGCAAA+TGG 0.504440 1.2:-15779026 MS.gene63019:CDS
AGCAAATGGATGAACTAAAA+GGG 0.505397 1.2:-15779012 MS.gene63019:CDS
AGCAGAGGTTGATAAGGAAA+GGG 0.505776 1.2:-15778762 MS.gene63019:CDS
AGACAGAGAATATGGCTCTC+AGG 0.506015 1.2:-15779582 MS.gene63019:CDS
AAACTCTAACTGACGGGTCG+AGG 0.508304 1.2:-15780668 MS.gene63019:CDS
AAGTCTTCCGAGAAGAGTCC+GGG 0.509516 1.2:-15781772 MS.gene63019:CDS
AGTCTGCCTCCATGCTCATT+AGG 0.510576 1.2:+15778819 None:intergenic
CCATTTATGATGCATGTAGT+AGG 0.514775 1.2:+15780900 None:intergenic
AAGCAGAGATTGTTAAGGAG+AGG 0.518508 1.2:-15778553 MS.gene63019:CDS
AACTTGATGGATCAGCTTGT+CGG 0.521719 1.2:+15779194 None:intergenic
GTAGAAGAAGACGATGAAAG+TGG 0.521926 1.2:+15777804 None:intergenic
ATGTGGAGGATGCATTCAAA+TGG 0.526273 1.2:-15777915 MS.gene63019:CDS
AGGTTGGCTGACGGTAGCTC+CGG 0.528682 1.2:-15777858 MS.gene63019:CDS
AAGCAGAGGTTGATAAGGAA+AGG 0.529296 1.2:-15778763 MS.gene63019:CDS
TGCATCCCTGAACAAATATG+AGG 0.529869 1.2:-15777835 MS.gene63019:CDS
AATGAAGTGTAGGGAATTGG+AGG 0.530196 1.2:-15778405 MS.gene63019:CDS
TGAAATTGCGATGAAGTGTA+AGG 0.531007 1.2:-15778729 MS.gene63019:CDS
ATGATGCATGTAGTAGGTAA+AGG 0.532551 1.2:+15780906 None:intergenic
TGTCAATGCCAAAGAAGACT+TGG 0.532566 1.2:-15780610 MS.gene63019:CDS
GAGGACCTAGCACTCGCGGC+CGG 0.536253 1.2:-15778074 MS.gene63019:CDS
GCTATTGTTAATATATCGAA+TGG 0.539242 1.2:-15780774 MS.gene63019:CDS
AGACTCCACTTCTTCTAGGT+TGG 0.540766 1.2:-15777874 MS.gene63019:CDS
AAGATCTAAATGAAGGGTCA+AGG 0.540910 1.2:-15780746 MS.gene63019:CDS
GAAAGAGTTAGAAAGCAAAT+CGG 0.543732 1.2:-15778699 MS.gene63019:CDS
TTTCTGAACCATTCATCTTG+AGG 0.545654 1.2:+15779299 None:intergenic
AGAAATTGCAATGAAGTGTA+GGG 0.545960 1.2:-15778414 MS.gene63019:CDS
TGTGATATCCTCAAGATGAA+TGG 0.547937 1.2:-15779307 MS.gene63019:CDS
CCTGAACTCTCAGCTTCACC+CGG 0.548091 1.2:+15781754 None:intergenic
ACCAAGTTGTTCCGACTCAT+GGG 0.551428 1.2:-15779266 MS.gene63019:CDS
GAGAGATTCGACGCAAAATG+AGG 0.551921 1.2:+15779375 None:intergenic
GCTAGAGAGCAAACGTGCAA+AGG 0.554518 1.2:-15778588 MS.gene63019:CDS
AAATCACGCCAGTTCTGAGA+AGG 0.555578 1.2:-15777763 MS.gene63019:CDS
AACTCTAACTGACGGGTCGA+GGG 0.556177 1.2:-15780667 MS.gene63019:CDS
GTCAGCCAACCTAGAAGAAG+TGG 0.556265 1.2:+15777869 None:intergenic
CAAAATCAGAACTGTTGAGA+GGG 0.556395 1.2:-15779530 MS.gene63019:CDS
TTGAAAGCAGGAAGTATCAA+AGG 0.558653 1.2:-15781048 MS.gene63019:intron
CTCTCACACGCTATCTTCCA+AGG 0.559134 1.2:-15778798 MS.gene63019:CDS
TCAAAATCAGAACTGTTGAG+AGG 0.559485 1.2:-15779531 MS.gene63019:CDS
ATATTTGTTCAGGGATGCAC+CGG 0.560765 1.2:+15777839 None:intergenic
GCTATTGTTAATATACCGAA+TGG 0.561611 1.2:-15780699 MS.gene63019:CDS
AGAAAATCGCCTAATGAGCA+TGG 0.562266 1.2:-15778828 MS.gene63019:CDS
CCAGCAATCATTGCTCATGC+GGG 0.562517 1.2:-15777945 MS.gene63019:CDS
GAAATCTCTGGCTACACTTG+AGG 0.562631 1.2:-15778003 MS.gene63019:CDS
GGTTGACTTCTTAGAAGCAG+AGG 0.562756 1.2:-15778462 MS.gene63019:CDS
GGAACAACTTGGTTCACACC+TGG 0.564647 1.2:+15779276 None:intergenic
TGCGATGAAGTGTAAGGACC+TGG 0.564649 1.2:-15778723 MS.gene63019:CDS
GAACGCAAGCAGCTTTGTTG+AGG 0.566647 1.2:-15779104 MS.gene63019:CDS
AGCAGAGGTTGAAAAGGAGA+GGG 0.567149 1.2:-15778447 MS.gene63019:CDS
TATCTTCATTCTCCGACACT+CGG 0.570213 1.2:+15779432 None:intergenic
GTTGCTGAAGAAGCCATAGC+AGG 0.570953 1.2:-15780570 MS.gene63019:intron
CCGACACTCGGACTCAAGCT+TGG 0.571160 1.2:+15779444 None:intergenic
TGAAATTGCAATAAAATGTG+AGG 0.573293 1.2:-15778624 MS.gene63019:CDS
ATCATCAACATCTTCAGCAC+AGG 0.574007 1.2:+15780974 None:intergenic
AGATCTAAATGAAGGGTCAA+GGG 0.576169 1.2:-15780745 MS.gene63019:CDS
GCCCATGAGTCGGAACAACT+TGG 0.576916 1.2:+15779265 None:intergenic
AATAAAATGTGAGGGTCTAG+AGG 0.579023 1.2:-15778615 MS.gene63019:CDS
AGCAATGATTGCTGGACTTG+CGG 0.580668 1.2:+15777953 None:intergenic
GAAAAGAAGATCTAAATGAA+GGG 0.583779 1.2:-15780752 MS.gene63019:CDS
ACCTGGCGGAAGAGTTTGAA+AGG 0.585732 1.2:-15778496 MS.gene63019:CDS
GCAATCATTGCTCATGCGGG+TGG 0.586991 1.2:-15777942 MS.gene63019:CDS
AGAATACTTCTCAGAATGAG+AGG 0.588629 1.2:+15781723 None:intergenic
AGGAAGAAACTCTAACTGAC+GGG 0.589905 1.2:-15780674 MS.gene63019:CDS
AATTGGAGGAAGAGATACTC+AGG 0.589915 1.2:-15778391 MS.gene63019:CDS
TGTTAATATACCGAATGGAA+AGG 0.591354 1.2:-15780694 MS.gene63019:CDS
GGTCAACTTATTAGAAGCAG+AGG 0.594256 1.2:-15778777 MS.gene63019:CDS
TAGCGCAGACGCCCATGAGT+CGG 0.594519 1.2:+15779255 None:intergenic
GTTTGAAAGGAAATGTGCAA+AGG 0.595859 1.2:-15778483 MS.gene63019:CDS
TGGAGAAAAGAAAATCAAGC+AGG 0.595873 1.2:-15778351 MS.gene63019:intron
AAGGAAGAAACTCTAACTGA+CGG 0.597240 1.2:-15780675 MS.gene63019:CDS
TGCGGCCAAGTGTAAGGACC+TGG 0.601353 1.2:-15778513 MS.gene63019:CDS
AAGCAGAGGTTGAAAAGGAG+AGG 0.601507 1.2:-15778448 MS.gene63019:CDS
AGATGAATGGTTCAGAAACC+AGG 0.602181 1.2:-15779294 MS.gene63019:CDS
GCAAAATGAGGATGAAGCAA+TGG 0.602511 1.2:+15779387 None:intergenic
TACTGAGAGGCTAACTGCGG+TGG 0.603786 1.2:-15779332 MS.gene63019:CDS
TCCAGCAATCATTGCTCATG+CGG 0.605279 1.2:-15777946 MS.gene63019:CDS
GTTCCTCTCCTTATCAACGT+TGG 0.606642 1.2:+15778655 None:intergenic
GAAATTGCAATAAAATGTGA+GGG 0.607539 1.2:-15778623 MS.gene63019:CDS
CAATGACGGATAAGAAGAGA+TGG 0.607557 1.2:-15781807 MS.gene63019:CDS
TGATCTAAATGACGGGTCAG+TGG 0.607812 1.2:-15780820 MS.gene63019:CDS
GAAAAGTGAAGTGTGTATTG+AGG 0.618639 1.2:-15778939 MS.gene63019:CDS
CATAAATGGTGGTTCATCAG+AGG 0.620066 1.2:-15780886 MS.gene63019:CDS
AGAACTGGCGTGATTTGGCA+AGG 0.622883 1.2:+15777770 None:intergenic
AAGCCAACGTTGATAAGGAG+AGG 0.624711 1.2:-15778658 MS.gene63019:CDS
ACTAAAAGGGAAGTTAGAGA+AGG 0.626479 1.2:-15778999 MS.gene63019:CDS
TCAGGAGGACCTAGCACTCG+CGG 0.635445 1.2:-15778078 MS.gene63019:intron
GGTTGCGTCAGACGAAATTG+CGG 0.636623 1.2:-15778531 MS.gene63019:CDS
AATCACGCCAGTTCTGAGAA+GGG 0.639029 1.2:-15777762 MS.gene63019:CDS
CTCATGCGGGTGGAGAGATG+TGG 0.640653 1.2:-15777932 MS.gene63019:CDS
ACTTCTTCTAGGTTGGCTGA+CGG 0.645634 1.2:-15777867 MS.gene63019:CDS
GTCACATCTTCAGTTAAAGG+AGG 0.646496 1.2:-15778915 MS.gene63019:CDS
GGAGGCAGTTCAGAAATTGG+AGG 0.651234 1.2:-15778897 MS.gene63019:CDS
TGAACGTGATATGCGTCAAA+CGG 0.658530 1.2:-15779617 MS.gene63019:CDS
CCAAGCTTGAGTCCGAGTGT+CGG 0.665994 1.2:-15779444 MS.gene63019:CDS
ACTACATGCATCATAAATGG+TGG 0.667278 1.2:-15780897 MS.gene63019:CDS
ATGCGGGTGGAGAGATGTGG+AGG 0.668639 1.2:-15777929 MS.gene63019:CDS
TTTAAAGAAGAAACTTGACA+CGG 0.699579 1.2:-15779863 MS.gene63019:CDS
GGCCAAGTGTAAGGACCTGG+CGG 0.702161 1.2:-15778510 MS.gene63019:CDS
GTCAGTCAGACAGTACTGAG+AGG 0.704589 1.2:-15779345 MS.gene63019:CDS
AGAAAACAATAGCATCTTTG+GGG 0.712210 1.2:-15778034 MS.gene63019:CDS
AAATCGCCTAATGAGCATGG+AGG 0.744978 1.2:-15778825 MS.gene63019:CDS
CAGTACTGAGAGGCTAACTG+CGG 0.757500 1.2:-15779335 MS.gene63019:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTATTTCATAAAAAT+AGG - chr1.2:15781232-15781251 MS.gene63019:intron 10.0%
!! ATTTCATAAAAATAGGTTAT+TGG - chr1.2:15781239-15781258 MS.gene63019:intron 15.0%
!! TATAATAATGACATTATAAG+AGG + chr1.2:15779452-15779471 None:intergenic 15.0%
!!! GTTATATTTTGCTTTTATTT+TGG - chr1.2:15781305-15781324 MS.gene63019:intron 15.0%
!!! TTAGAATTATTTTCTTACAT+TGG - chr1.2:15779478-15779497 MS.gene63019:CDS 15.0%
!!! TTTTTCCTTATATTTGAAAT+CGG - chr1.2:15781343-15781362 MS.gene63019:intron 15.0%
!! AATAACATCCAAGATATTAT+AGG - chr1.2:15781264-15781283 MS.gene63019:intron 20.0%
!! AATTTCATTTATTTCACGTA+TGG - chr1.2:15777878-15777897 MS.gene63019:CDS 20.0%
!! ATATCAAACCTATAATATCT+TGG + chr1.2:15781275-15781294 None:intergenic 20.0%
!! TTATCATTAGAAATCAAACT+CGG - chr1.2:15778323-15778342 MS.gene63019:intron 20.0%
! AAAAAGATGATCTAAATGAC+GGG - chr1.2:15778679-15778698 MS.gene63019:CDS 25.0%
! AAAACAATATATCCAGGAAA+TGG + chr1.2:15779529-15779548 None:intergenic 25.0%
! AGGAAGAAGTTATTACTTAA+CGG - chr1.2:15778282-15778301 MS.gene63019:intron 25.0%
! ATATTGCTTTCTGTAATTCT+CGG - chr1.2:15778987-15779006 MS.gene63019:CDS 25.0%
! CAATTAAGATATCATCAGAT+TGG + chr1.2:15777958-15777977 None:intergenic 25.0%
! GAAAAAGATGATCTAAATGA+CGG - chr1.2:15778678-15778697 MS.gene63019:CDS 25.0%
! GAAAAGAAGATCTAAATGAA+GGG - chr1.2:15778754-15778773 MS.gene63019:CDS 25.0%
! GAAATTGCAATAAAATGTGA+GGG - chr1.2:15780883-15780902 MS.gene63019:CDS 25.0%
! GCTATTGTTAATATATCGAA+TGG - chr1.2:15778732-15778751 MS.gene63019:CDS 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1.2:15779358-15779377 MS.gene63019:CDS 25.0%
! TAGGTTTGATATCATTAACT+AGG - chr1.2:15781283-15781302 MS.gene63019:intron 25.0%
! TATTATTAACATACCTGCTA+TGG + chr1.2:15778952-15778971 None:intergenic 25.0%
! TGAAATTGCAATAAAATGTG+AGG - chr1.2:15780882-15780901 MS.gene63019:CDS 25.0%
! TTCTCTTAAAATAGATCTGA+TGG - chr1.2:15780333-15780352 MS.gene63019:intron 25.0%
! TTCTTCCGATTTCAAATATA+AGG + chr1.2:15781351-15781370 None:intergenic 25.0%
! TTTAAAGAAGAAACTTGACA+CGG - chr1.2:15779643-15779662 MS.gene63019:CDS 25.0%
! TTTCTATGAAGTATAGTTTG+AGG + chr1.2:15781216-15781235 None:intergenic 25.0%
!! ATCCTTTTGAATATAGTTAC+TGG - chr1.2:15778034-15778053 MS.gene63019:CDS 25.0%
!! TCCTTTTGAATATAGTTACT+GGG - chr1.2:15778035-15778054 MS.gene63019:CDS 25.0%
!!! TATTGTTTGCTTTGATTTGT+AGG + chr1.2:15780659-15780678 None:intergenic 25.0%
!!! TCTATTTTAAGAGAACTTGA+TGG + chr1.2:15780328-15780347 None:intergenic 25.0%
!!! TTGAAGTATCTAATTTGTTC+TGG + chr1.2:15779853-15779872 None:intergenic 25.0%
AACCATTAGAAAGGATTTAG+AGG + chr1.2:15779398-15779417 None:intergenic 30.0%
AAGAAATTGCAATGAAGTGT+AGG - chr1.2:15781091-15781110 MS.gene63019:intron 30.0%
AATGACATTATAAGAGGTAG+AGG + chr1.2:15779446-15779465 None:intergenic 30.0%
ACCCAGTAACTATATTCAAA+AGG + chr1.2:15778039-15778058 None:intergenic 30.0%
ACGACACTAACTTAATAACT+TGG + chr1.2:15777930-15777949 None:intergenic 30.0%
AGAAAACAATAGCATCTTTG+GGG - chr1.2:15781472-15781491 MS.gene63019:intron 30.0%
AGAAATTGCAATGAAGTGTA+GGG - chr1.2:15781092-15781111 MS.gene63019:intron 30.0%
AGCAAATGGATGAACTAAAA+GGG - chr1.2:15780494-15780513 MS.gene63019:intron 30.0%
ATATCCAAGAAAGGATAGAA+TGG + chr1.2:15779046-15779065 None:intergenic 30.0%
ATTACCATTCTATCCTTTCT+TGG - chr1.2:15779039-15779058 MS.gene63019:CDS 30.0%
ATTCTTGAATTGATCAAGCT+CGG + chr1.2:15780281-15780300 None:intergenic 30.0%
CAGAAAACAATAGCATCTTT+GGG - chr1.2:15781471-15781490 MS.gene63019:intron 30.0%
CATTAGAGAAACCATTAGAA+AGG + chr1.2:15779407-15779426 None:intergenic 30.0%
CTCAATAAGACTAGAACAAA+GGG + chr1.2:15779571-15779590 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - chr1.2:15779405-15779424 MS.gene63019:CDS 30.0%
GAAAGAGTTAGAAAGCAAAT+CGG - chr1.2:15780807-15780826 MS.gene63019:CDS 30.0%
GAAAGATTATCTGTGTTCTT+TGG - chr1.2:15777819-15777838 MS.gene63019:CDS 30.0%
GCCTAAGCAAACAAATAAAA+AGG + chr1.2:15779594-15779613 None:intergenic 30.0%
GCTATTGTTAATATACCGAA+TGG - chr1.2:15778807-15778826 MS.gene63019:CDS 30.0%
GGAAAAGAAGATCTAAATGA+AGG - chr1.2:15778753-15778772 MS.gene63019:CDS 30.0%
TGATATTACGATATTCACAC+AGG + chr1.2:15778146-15778165 None:intergenic 30.0%
TGTCATTAAAACTTGAAAGC+AGG - chr1.2:15778446-15778465 MS.gene63019:CDS 30.0%
TGTTAATATACCGAATGGAA+AGG - chr1.2:15778812-15778831 MS.gene63019:CDS 30.0%
TTCTTTGTCAACGCATTTAT+CGG + chr1.2:15780440-15780459 None:intergenic 30.0%
TTTATTTGTTTGCTTAGGCT+GGG - chr1.2:15779595-15779614 MS.gene63019:CDS 30.0%
! CATTTGATCTTTTCTATGTC+AGG - chr1.2:15781410-15781429 MS.gene63019:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1.2:15779415-15779434 MS.gene63019:CDS 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1.2:15779354-15779373 None:intergenic 30.0%
!! GCCTTTTTATTTGTTTGCTT+AGG - chr1.2:15779590-15779609 MS.gene63019:CDS 30.0%
!! TTTTATTTGTTTGCTTAGGC+TGG - chr1.2:15779594-15779613 MS.gene63019:CDS 30.0%
!!! TTCCAATTCGTGAGTTTTTT+CGG + chr1.2:15779792-15779811 None:intergenic 30.0%
AACAAAGGGAGAAAAAGAAG+AGG + chr1.2:15779557-15779576 None:intergenic 35.0%
AAGATCTAAATGAAGGGTCA+AGG - chr1.2:15778760-15778779 MS.gene63019:CDS 35.0%
AAGGAAGAAACTCTAACTGA+CGG - chr1.2:15778831-15778850 MS.gene63019:CDS 35.0%
AATAAAATGTGAGGGTCTAG+AGG - chr1.2:15780891-15780910 MS.gene63019:CDS 35.0%
ACTAAAAGGGAAGTTAGAGA+AGG - chr1.2:15780507-15780526 MS.gene63019:intron 35.0%
ACTACATGCATCATAAATGG+TGG - chr1.2:15778609-15778628 MS.gene63019:CDS 35.0%
AGAATACTTCTCAGAATGAG+AGG + chr1.2:15777786-15777805 None:intergenic 35.0%
AGAGTTTCTTCCTTTCCATT+CGG + chr1.2:15778825-15778844 None:intergenic 35.0%
AGATCTAAATGAAGGGTCAA+GGG - chr1.2:15778761-15778780 MS.gene63019:CDS 35.0%
AGCTTTCCTCATATTTGTTC+AGG + chr1.2:15781680-15781699 None:intergenic 35.0%
AGGCATACCTAAGAAAAATG+CGG + chr1.2:15778126-15778145 None:intergenic 35.0%
AGTTAGGTTAGGACTTAGAT+AGG - chr1.2:15779220-15779239 MS.gene63019:CDS 35.0%
ATCACGTTCAACAGAAGATT+TGG + chr1.2:15779879-15779898 None:intergenic 35.0%
ATCCTTTCTTGGATATGTGT+TGG - chr1.2:15779050-15779069 MS.gene63019:CDS 35.0%
ATGAGGAGAAACTTAGGATT+TGG + chr1.2:15779194-15779213 None:intergenic 35.0%
ATGATGCATGTAGTAGGTAA+AGG + chr1.2:15778603-15778622 None:intergenic 35.0%
ATGGTTAGAGACAGAGAATA+TGG - chr1.2:15779916-15779935 MS.gene63019:intron 35.0%
ATTAGAAGCCAACGTTGATA+AGG - chr1.2:15780843-15780862 MS.gene63019:CDS 35.0%
CAAAATCAGAACTGTTGAGA+GGG - chr1.2:15779976-15779995 MS.gene63019:intron 35.0%
CAGCAAATGGATGAACTAAA+AGG - chr1.2:15780493-15780512 MS.gene63019:intron 35.0%
CATTGCAATTTCTTCAGACA+TGG + chr1.2:15781085-15781104 None:intergenic 35.0%
CCAGAAAACAATAGCATCTT+TGG - chr1.2:15781470-15781489 MS.gene63019:intron 35.0%
CCATTTATGAGGAGAAACTT+AGG + chr1.2:15779200-15779219 None:intergenic 35.0%
CCATTTATGATGCATGTAGT+AGG + chr1.2:15778609-15778628 None:intergenic 35.0%
CCTAAGTTTCTCCTCATAAA+TGG - chr1.2:15779197-15779216 MS.gene63019:CDS 35.0%
CCTACTACATGCATCATAAA+TGG - chr1.2:15778606-15778625 MS.gene63019:CDS 35.0%
CTAACCTAACTCCATTTATG+AGG + chr1.2:15779211-15779230 None:intergenic 35.0%
CTAGGAAAGATAACTAACTG+TGG + chr1.2:15778254-15778273 None:intergenic 35.0%
CTCATAAATGGAGTTAGGTT+AGG - chr1.2:15779209-15779228 MS.gene63019:CDS 35.0%
CTGTTTAACCAAGTCTTCTT+TGG + chr1.2:15778907-15778926 None:intergenic 35.0%
GAAAAGAAAATCAAGCAGGT+TGG - chr1.2:15781159-15781178 MS.gene63019:intron 35.0%
GAAAAGTGAAGTGTGTATTG+AGG - chr1.2:15780567-15780586 MS.gene63019:intron 35.0%
GAAGAAAAGACCAAAAGAGT+TGG - chr1.2:15778192-15778211 MS.gene63019:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr1.2:15779393-15779412 MS.gene63019:CDS 35.0%
GATGGCAAAACAATATATCC+AGG + chr1.2:15779535-15779554 None:intergenic 35.0%
GCTCAATAAGACTAGAACAA+AGG + chr1.2:15779572-15779591 None:intergenic 35.0%
GCTTTCCTCATATTTGTTCA+GGG + chr1.2:15781679-15781698 None:intergenic 35.0%
GGTAGATGAAAATGGAGAAA+AGG - chr1.2:15778641-15778660 MS.gene63019:CDS 35.0%
GTATCAAAGGAAGCTTCTAA+TGG - chr1.2:15778471-15778490 MS.gene63019:CDS 35.0%
GTTAGAAGCAGAGATTGTTA+AGG - chr1.2:15780948-15780967 MS.gene63019:CDS 35.0%
GTTAGGTTAGGACTTAGATA+GGG - chr1.2:15779221-15779240 MS.gene63019:CDS 35.0%
GTTTGAAAGGAAATGTGCAA+AGG - chr1.2:15781023-15781042 MS.gene63019:CDS 35.0%
GTTTGTATGATTCCATTTCC+TGG - chr1.2:15779514-15779533 MS.gene63019:CDS 35.0%
TACCAACACATATCCAAGAA+AGG + chr1.2:15779055-15779074 None:intergenic 35.0%
TCAAAATCAGAACTGTTGAG+AGG - chr1.2:15779975-15779994 MS.gene63019:intron 35.0%
TCATCAGAGGTAGATGAAAA+TGG - chr1.2:15778633-15778652 MS.gene63019:CDS 35.0%
TGAAATTGCGATGAAGTGTA+AGG - chr1.2:15780777-15780796 MS.gene63019:CDS 35.0%
TGGAGAAAAGAAAATCAAGC+AGG - chr1.2:15781155-15781174 MS.gene63019:intron 35.0%
TGTGATATCCTCAAGATGAA+TGG - chr1.2:15780199-15780218 MS.gene63019:intron 35.0%
TTCTCCTCATAAATGGAGTT+AGG - chr1.2:15779204-15779223 MS.gene63019:CDS 35.0%
TTTCTGAACCATTCATCTTG+AGG + chr1.2:15780210-15780229 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1.2:15779374-15779393 None:intergenic 35.0%
! CCAAAGATGCTATTGTTTTC+TGG + chr1.2:15781473-15781492 None:intergenic 35.0%
! GATGGACGATTTTCTTGAAA+TGG - chr1.2:15780351-15780370 MS.gene63019:intron 35.0%
! TATCTTTCCTAGACTTGTTC+AGG - chr1.2:15778262-15778281 MS.gene63019:intron 35.0%
! TCATGTACCGCATTTTTCTT+AGG - chr1.2:15778116-15778135 MS.gene63019:intron 35.0%
! TCTTGGATATGTGTTGGTAT+TGG - chr1.2:15779056-15779075 MS.gene63019:CDS 35.0%
! TGCTTCTAATAAGTTGACCT+TGG + chr1.2:15780728-15780747 None:intergenic 35.0%
! TTGATCTTTTCTATGTCAGG+AGG - chr1.2:15781413-15781432 MS.gene63019:intron 35.0%
!! AGGTGTTGATGCAATTTCAT+CGG + chr1.2:15778583-15778602 None:intergenic 35.0%
!! ATTAGAAGCAGAGGTTGATA+AGG - chr1.2:15780738-15780757 MS.gene63019:CDS 35.0%
!! CAAAAGAGTTGGTCTTGAAT+CGG - chr1.2:15778203-15778222 MS.gene63019:intron 35.0%
!! TGAGAAGTATTCTGATGAAC+AGG - chr1.2:15777793-15777812 MS.gene63019:CDS 35.0%
!! TGCTATTGTTTTCTGGCATT+CGG + chr1.2:15781466-15781485 None:intergenic 35.0%
!! TTGAAAGCAGGAAGTATCAA+AGG - chr1.2:15778458-15778477 MS.gene63019:CDS 35.0%
AAAAGGGAAGTTAGAGAAGG+TGG - chr1.2:15780510-15780529 MS.gene63019:intron 40.0%
AAAGGAGGCAGTTCAGAAAT+TGG - chr1.2:15780606-15780625 MS.gene63019:CDS 40.0%
AAGAAAAAAGCTGAGTGAGC+AGG + chr1.2:15778404-15778423 None:intergenic 40.0%
AAGCAGAGATTGTTAAGGAG+AGG - chr1.2:15780953-15780972 MS.gene63019:CDS 40.0%
AAGGGAGAAAAAGAAGAGGA+TGG + chr1.2:15779553-15779572 None:intergenic 40.0%
AATGAAGTGTAGGGAATTGG+AGG - chr1.2:15781101-15781120 MS.gene63019:intron 40.0%
AATTGGAGGAAGAGATACTC+AGG - chr1.2:15781115-15781134 MS.gene63019:intron 40.0%
ACACAAGTGTTTAGTGCACA+AGG + chr1.2:15778376-15778395 None:intergenic 40.0%
ACTTCTTCCTGAACAAGTCT+AGG + chr1.2:15778272-15778291 None:intergenic 40.0%
AGAAAAAAGCTGAGTGAGCA+GGG + chr1.2:15778403-15778422 None:intergenic 40.0%
AGAAAATCGCCTAATGAGCA+TGG - chr1.2:15780678-15780697 MS.gene63019:CDS 40.0%
AGAAATCAAACTCGGCAATC+CGG - chr1.2:15778331-15778350 MS.gene63019:intron 40.0%
AGATGAATGGTTCAGAAACC+AGG - chr1.2:15780212-15780231 MS.gene63019:intron 40.0%
AGCAGAGATTGTTAAGGAGA+GGG - chr1.2:15780954-15780973 MS.gene63019:CDS 40.0%
AGCCGAAAAAACTCACGAAT+TGG - chr1.2:15779787-15779806 MS.gene63019:CDS 40.0%
AGGAAGAAACTCTAACTGAC+GGG - chr1.2:15778832-15778851 MS.gene63019:CDS 40.0%
AGTGACTGTTGAATAGAGAC+CGG + chr1.2:15779155-15779174 None:intergenic 40.0%
ATATGCGTCAAACGGTTGAA+TGG - chr1.2:15779897-15779916 MS.gene63019:CDS 40.0%
ATATTTGTTCAGGGATGCAC+CGG + chr1.2:15781670-15781689 None:intergenic 40.0%
ATCATCAACATCTTCAGCAC+AGG + chr1.2:15778535-15778554 None:intergenic 40.0%
ATGTGGAGGATGCATTCAAA+TGG - chr1.2:15781591-15781610 MS.gene63019:intron 40.0%
CATAAATGGTGGTTCATCAG+AGG - chr1.2:15778620-15778639 MS.gene63019:CDS 40.0%
CGGATAAGAAGAGATGGTTA+TGG - chr1.2:15777705-15777724 MS.gene63019:CDS 40.0%
CTGCGTGTCTACGAATTATT+CGG - chr1.2:15779088-15779107 MS.gene63019:CDS 40.0%
CTTAGAAGCAGAGGTTGAAA+AGG - chr1.2:15781053-15781072 MS.gene63019:intron 40.0%
GAATGCTAGCAGTGTCAATA+AGG + chr1.2:15781533-15781552 None:intergenic 40.0%
GATAGAGTCACTCATCTAGA+TGG - chr1.2:15779692-15779711 MS.gene63019:CDS 40.0%
GCAAAATGAGGATGAAGCAA+TGG + chr1.2:15780122-15780141 None:intergenic 40.0%
GCATGAGATCCTAGTTCAAT+CGG - chr1.2:15779946-15779965 MS.gene63019:intron 40.0%
GGAGTCACATCTTCAGTTAA+AGG - chr1.2:15780588-15780607 MS.gene63019:CDS 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr1.2:15779386-15779405 None:intergenic 40.0%
GGTCAACTTATTAGAAGCAG+AGG - chr1.2:15780729-15780748 MS.gene63019:CDS 40.0%
GTAGAAGAAGACGATGAAAG+TGG + chr1.2:15781705-15781724 None:intergenic 40.0%
GTCACATCTTCAGTTAAAGG+AGG - chr1.2:15780591-15780610 MS.gene63019:CDS 40.0%
TATCTTCATTCTCCGACACT+CGG + chr1.2:15780077-15780096 None:intergenic 40.0%
TGAACGTGATATGCGTCAAA+CGG - chr1.2:15779889-15779908 MS.gene63019:CDS 40.0%
TGACATCATGACTCAGCAAA+TGG - chr1.2:15780480-15780499 MS.gene63019:intron 40.0%
TGCAATGAAGTGTAGGGAAT+TGG - chr1.2:15781098-15781117 MS.gene63019:intron 40.0%
TGCATCCCTGAACAAATATG+AGG - chr1.2:15781671-15781690 MS.gene63019:intron 40.0%
TGCTTTCTAACTCTTTCTCC+AGG + chr1.2:15780804-15780823 None:intergenic 40.0%
TGTCAATGCCAAAGAAGACT+TGG - chr1.2:15778896-15778915 MS.gene63019:CDS 40.0%
TTTCACGTATGGAAAACACG+AGG - chr1.2:15777889-15777908 MS.gene63019:CDS 40.0%
! AACTTGATGGATCAGCTTGT+CGG + chr1.2:15780315-15780334 None:intergenic 40.0%
! ATATGCAATGTGTCGTTGTC+TGG + chr1.2:15778097-15778116 None:intergenic 40.0%
! CGATTCAAGACCAACTCTTT+TGG + chr1.2:15778205-15778224 None:intergenic 40.0%
! TCATCTAGATGGAGCACTTA+AGG - chr1.2:15779703-15779722 MS.gene63019:CDS 40.0%
!! AAGCAGAGGTTGATAAGGAA+AGG - chr1.2:15780743-15780762 MS.gene63019:CDS 40.0%
!! AGCAGAGGTTGATAAGGAAA+GGG - chr1.2:15780744-15780763 MS.gene63019:CDS 40.0%
!! GGTGTTGATGCAATTTCATC+GGG + chr1.2:15778582-15778601 None:intergenic 40.0%
!!! TACAGCTTTTGAGGTGACAT+CGG + chr1.2:15778511-15778530 None:intergenic 40.0%
!!! TTCGTGAGTTTTTTCGGCTA+CGG + chr1.2:15779786-15779805 None:intergenic 40.0%
AAAGTCTTCCGAGAAGAGTC+CGG - chr1.2:15777733-15777752 MS.gene63019:CDS 45.0%
AAATCAAACTCGGCAATCCG+GGG - chr1.2:15778333-15778352 MS.gene63019:intron 45.0%
AAATCGCCTAATGAGCATGG+AGG - chr1.2:15780681-15780700 MS.gene63019:CDS 45.0%
AACCAAGTTGTTCCGACTCA+TGG - chr1.2:15780239-15780258 MS.gene63019:intron 45.0%
AAGCAGAGGTTGAAAAGGAG+AGG - chr1.2:15781058-15781077 MS.gene63019:intron 45.0%
AATTCGACCCTTCTCAGAAC+TGG + chr1.2:15781754-15781773 None:intergenic 45.0%
ACCAAGTTGTTCCGACTCAT+GGG - chr1.2:15780240-15780259 MS.gene63019:intron 45.0%
AGACAGAGAATATGGCTCTC+AGG - chr1.2:15779924-15779943 MS.gene63019:intron 45.0%
AGACTCCACTTCTTCTAGGT+TGG - chr1.2:15781632-15781651 MS.gene63019:intron 45.0%
AGAGAGACTCCACTTCTTCT+AGG - chr1.2:15781628-15781647 MS.gene63019:intron 45.0%
AGCAATGATTGCTGGACTTG+CGG + chr1.2:15781556-15781575 None:intergenic 45.0%
AGCAGAGGTTGAAAAGGAGA+GGG - chr1.2:15781059-15781078 MS.gene63019:intron 45.0%
AGGAAGGTGAATTCAGTAGC+AGG + chr1.2:15778074-15778093 None:intergenic 45.0%
GAAAGCAAATCGGCAATGCT+TGG - chr1.2:15780817-15780836 MS.gene63019:CDS 45.0%
GAAATCAAACTCGGCAATCC+GGG - chr1.2:15778332-15778351 MS.gene63019:intron 45.0%
GAAATCTCTGGCTACACTTG+AGG - chr1.2:15781503-15781522 MS.gene63019:intron 45.0%
GAAGAAGTGGAGTCTCTCTT+AGG + chr1.2:15781627-15781646 None:intergenic 45.0%
GAGAGATTCGACGCAAAATG+AGG + chr1.2:15780134-15780153 None:intergenic 45.0%
GGAAGGTGAATTCAGTAGCA+GGG + chr1.2:15778073-15778092 None:intergenic 45.0%
GTTCCTCTCCTTATCAACGT+TGG + chr1.2:15780854-15780873 None:intergenic 45.0%
TCCAGCAATCATTGCTCATG+CGG - chr1.2:15781560-15781579 MS.gene63019:intron 45.0%
TCTCCATACAAGCTAGCTGT+TGG + chr1.2:15781141-15781160 None:intergenic 45.0%
TGAGCTCTTCCGATTGAACT+AGG + chr1.2:15779958-15779977 None:intergenic 45.0%
TGCTTGCTTTCTGTATCGTC+CGG - chr1.2:15779133-15779152 MS.gene63019:CDS 45.0%
TGTTTGCTTAGGCTGGGAAA+AGG - chr1.2:15779601-15779620 MS.gene63019:CDS 45.0%
TTCTAGCCGAATACCACTCT+TGG + chr1.2:15781802-15781821 None:intergenic 45.0%
TTCTCAGAACTGGCGTGATT+TGG + chr1.2:15781744-15781763 None:intergenic 45.0%
! AAGCCAACGTTGATAAGGAG+AGG - chr1.2:15780848-15780867 MS.gene63019:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1.2:15779305-15779324 MS.gene63019:CDS 45.0%
! ACTTCTTCTAGGTTGGCTGA+CGG - chr1.2:15781639-15781658 MS.gene63019:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1.2:15779304-15779323 MS.gene63019:CDS 45.0%
! GAGCACTTAAGGAGTGTGTT+AGG - chr1.2:15779714-15779733 MS.gene63019:CDS 45.0%
! GGTTGACTTCTTAGAAGCAG+AGG - chr1.2:15781044-15781063 MS.gene63019:intron 45.0%
! TGTGTGAGTACTGTAAACCC+CGG + chr1.2:15778353-15778372 None:intergenic 45.0%
! TTTTTCTCGCGAACCAAGAG+TGG - chr1.2:15781786-15781805 MS.gene63019:CDS 45.0%
!! AAATCACGCCAGTTCTGAGA+AGG - chr1.2:15781743-15781762 MS.gene63019:CDS 45.0%
!! AAGCAGCTTTGTTGAGGAGT+TGG - chr1.2:15780408-15780427 MS.gene63019:intron 45.0%
!! AATCACGCCAGTTCTGAGAA+GGG - chr1.2:15781744-15781763 MS.gene63019:CDS 45.0%
!! AGTTCTGAGAAGGGTCGAAT+TGG - chr1.2:15781753-15781772 MS.gene63019:CDS 45.0%
!! TGATCTAAATGACGGGTCAG+TGG - chr1.2:15778686-15778705 MS.gene63019:CDS 45.0%
!!! ACAGCTTTTGAGGTGACATC+GGG + chr1.2:15778510-15778529 None:intergenic 45.0%
AACTTGACACGGTCACTCTC+AGG - chr1.2:15779654-15779673 MS.gene63019:CDS 50.0%
AAGTCTTCCGAGAAGAGTCC+GGG - chr1.2:15777734-15777753 MS.gene63019:CDS 50.0%
ACCTGGCGGAAGAGTTTGAA+AGG - chr1.2:15781010-15781029 MS.gene63019:CDS 50.0%
ACTAGCTGTCTCAGCTGCTT+GGG + chr1.2:15780011-15780030 None:intergenic 50.0%
AGTCTGCCTCCATGCTCATT+AGG + chr1.2:15780690-15780709 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1.2:15779306-15779325 None:intergenic 50.0%
CCAGCAATCATTGCTCATGC+GGG - chr1.2:15781561-15781580 MS.gene63019:intron 50.0%
CGAAATTGCGGCCAAGTGTA+AGG - chr1.2:15780987-15781006 MS.gene63019:CDS 50.0%
CGCGAACCAAGAGTGGTATT+CGG - chr1.2:15781793-15781812 MS.gene63019:CDS 50.0%
CTCTCACACGCTATCTTCCA+AGG - chr1.2:15780708-15780727 MS.gene63019:CDS 50.0%
CTGCTTGCGTTCTTAGTCTC+GGG + chr1.2:15780394-15780413 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1.2:15779309-15779328 MS.gene63019:CDS 50.0%
GCAATGATTGCTGGACTTGC+GGG + chr1.2:15781555-15781574 None:intergenic 50.0%
GCTAGAGAGCAAACGTGCAA+AGG - chr1.2:15780918-15780937 MS.gene63019:CDS 50.0%
GCTGCTTGCGTTCTTAGTCT+CGG + chr1.2:15780395-15780414 None:intergenic 50.0%
GGAACAACTTGGTTCACACC+TGG + chr1.2:15780233-15780252 None:intergenic 50.0%
GGAGGCAGTTCAGAAATTGG+AGG - chr1.2:15780609-15780628 MS.gene63019:CDS 50.0%
GGGGAATCAGCTGAAATCTC+TGG - chr1.2:15781491-15781510 MS.gene63019:intron 50.0%
GGTTGCGTCAGACGAAATTG+CGG - chr1.2:15780975-15780994 MS.gene63019:CDS 50.0%
GTCAGCCAACCTAGAAGAAG+TGG + chr1.2:15781640-15781659 None:intergenic 50.0%
GTTGCTGAAGAAGCCATAGC+AGG - chr1.2:15778936-15778955 MS.gene63019:CDS 50.0%
TACTAGCTGTCTCAGCTGCT+TGG + chr1.2:15780012-15780031 None:intergenic 50.0%
TCCTTTCAAACTCTTCCGCC+AGG + chr1.2:15781014-15781033 None:intergenic 50.0%
TGCGATGAAGTGTAAGGACC+TGG - chr1.2:15780783-15780802 MS.gene63019:CDS 50.0%
! AAACTCTAACTGACGGGTCG+AGG - chr1.2:15778838-15778857 MS.gene63019:CDS 50.0%
! AACTCTAACTGACGGGTCGA+GGG - chr1.2:15778839-15778858 MS.gene63019:CDS 50.0%
! AGAACTGGCGTGATTTGGCA+AGG + chr1.2:15781739-15781758 None:intergenic 50.0%
! AGCACAGGCTACAGCTTTTG+AGG + chr1.2:15778520-15778539 None:intergenic 50.0%
! AGGCCAACAGCTAGCTTGTA+TGG - chr1.2:15781135-15781154 MS.gene63019:intron 50.0%
! ATGTGTCGTTGTCTGGAGGA+AGG + chr1.2:15778090-15778109 None:intergenic 50.0%
! CAGTACTGAGAGGCTAACTG+CGG - chr1.2:15780171-15780190 MS.gene63019:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1.2:15779303-15779322 MS.gene63019:CDS 50.0%
! GTCAGTCAGACAGTACTGAG+AGG - chr1.2:15780161-15780180 MS.gene63019:intron 50.0%
! TGCAATGTGTCGTTGTCTGG+AGG + chr1.2:15778094-15778113 None:intergenic 50.0%
!! GAACGCAAGCAGCTTTGTTG+AGG - chr1.2:15780402-15780421 MS.gene63019:intron 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1.2:15779317-15779336 MS.gene63019:CDS 55.0%
AGCTTCACCCGGACTCTTCT+CGG + chr1.2:15777744-15777763 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1.2:15779318-15779337 None:intergenic 55.0%
CCAAGCTTGAGTCCGAGTGT+CGG - chr1.2:15780062-15780081 MS.gene63019:intron 55.0%
CCCGCATGAGCAATGATTGC+TGG + chr1.2:15781564-15781583 None:intergenic 55.0%
CCTGAACTCTCAGCTTCACC+CGG + chr1.2:15777755-15777774 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1.2:15779311-15779330 None:intergenic 55.0%
CTGGCATTCGGCAAGCTTTC+CGG + chr1.2:15781454-15781473 None:intergenic 55.0%
GCAATCATTGCTCATGCGGG+TGG - chr1.2:15781564-15781583 MS.gene63019:intron 55.0%
GCCCATGAGTCGGAACAACT+TGG + chr1.2:15780244-15780263 None:intergenic 55.0%
TACTGAGAGGCTAACTGCGG+TGG - chr1.2:15780174-15780193 MS.gene63019:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1.2:15779317-15779336 None:intergenic 55.0%
TTCCGCCAGGTCCTTACACT+TGG + chr1.2:15781001-15781020 None:intergenic 55.0%
ATGCGGGTGGAGAGATGTGG+AGG - chr1.2:15781577-15781596 MS.gene63019:intron 60.0%
CCGACACTCGGACTCAAGCT+TGG + chr1.2:15780065-15780084 None:intergenic 60.0%
CCGGGTGAAGCTGAGAGTTC+AGG - chr1.2:15777752-15777771 MS.gene63019:CDS 60.0%
CTCATGCGGGTGGAGAGATG+TGG - chr1.2:15781574-15781593 MS.gene63019:intron 60.0%
GGCCAAGTGTAAGGACCTGG+CGG - chr1.2:15780996-15781015 MS.gene63019:CDS 60.0%
TAGCGCAGACGCCCATGAGT+CGG + chr1.2:15780254-15780273 None:intergenic 60.0%
TCAGGAGGACCTAGCACTCG+CGG - chr1.2:15781428-15781447 MS.gene63019:intron 60.0%
TGCGGCCAAGTGTAAGGACC+TGG - chr1.2:15780993-15781012 MS.gene63019:CDS 60.0%
! AGGTTGGCTGACGGTAGCTC+CGG - chr1.2:15781648-15781667 MS.gene63019:intron 60.0%
GAGGACCTAGCACTCGCGGC+CGG - chr1.2:15781432-15781451 MS.gene63019:intron 70.0%
GCTTTCCGGCCGCGAGTGCT+AGG + chr1.2:15781440-15781459 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 15777701 15781827 15777701 ID=MS.gene63019
chr1.2 mRNA 15777701 15781827 15777701 ID=MS.gene63019.t1;Parent=MS.gene63019
chr1.2 exon 15781714 15781827 15781714 ID=MS.gene63019.t1.exon1;Parent=MS.gene63019.t1
chr1.2 CDS 15781714 15781827 15781714 ID=cds.MS.gene63019.t1;Parent=MS.gene63019.t1
chr1.2 exon 15780571 15781060 15780571 ID=MS.gene63019.t1.exon2;Parent=MS.gene63019.t1
chr1.2 CDS 15780571 15781060 15780571 ID=cds.MS.gene63019.t1;Parent=MS.gene63019.t1
chr1.2 exon 15778352 15779916 15778352 ID=MS.gene63019.t1.exon3;Parent=MS.gene63019.t1
chr1.2 CDS 15778352 15779916 15778352 ID=cds.MS.gene63019.t1;Parent=MS.gene63019.t1
chr1.2 exon 15777701 15778096 15777701 ID=MS.gene63019.t1.exon4;Parent=MS.gene63019.t1
chr1.2 CDS 15777701 15778096 15777701 ID=cds.MS.gene63019.t1;Parent=MS.gene63019.t1
Gene Sequence

>MS.gene63019

ATGACGGATAAGAAGAGATGGTTATGGAAGCGAAAGTCTTCCGAGAAGAGTCCGGGTGAAGCTGAGAGTTCAGGATCAGTTTCCTCTCATTCTGAGAAGTATTCTGATGAACAGGTATGAAAGATTATCTGTGTTCTTTGGATGTCTCATAAGTATTAGTCACGAGATTTGAATTTCAATTTCATTTATTTCACGTATGGAAAACACGAGGTTCACTCACTTACTTCCAAGTTATTAAGTTAGTGTCGTTTTCTCCAATCTGATGATATCTTAATTGATATAAATATACTCATAATAATACTGTGTAAATAACTAAATATGTTCTACATAAGCATCCTTTTGAATATAGTTACTGGGTTTTATAAATAACCCTGCTACTGAATTCACCTTCCTCCAGACAACGACACATTGCATATCATGTACCGCATTTTTCTTAGGTATGCCTGTGTGAATATCGTAATATCAATAAAATTTCTGTAAGATGAGTGTCAGAAGAAAAGACCAAAAGAGTTGGTCTTGAATCGGTAAGTTCTATTAATAAAGTCAAGTTCCACAGTTAGTTATCTTTCCTAGACTTGTTCAGGAAGAAGTTATTACTTAACGGATGTTGAAAGTATTTTTTTTATCATTAGAAATCAAACTCGGCAATCCGGGGTTTACAGTACTCACACACCTTGTGCACTAAACACTTGTGTTAGACCCTGCTCACTCAGCTTTTTTCTTTCATTTCTGATTAGTATTTTTGTGTCATTAAAACTTGAAAGCAGGAAGTATCAAAGGAAGCTTCTAATGGAAGCAATCATTCACCCGATGTCACCTCAAAAGCTGTAGCCTGTGCTGAAGATGTTGATGATTGTTCAGTTATCAATGAACAACTTCCCGATGAAATTGCATCAACACCTTTACCTACTACATGCATCATAAATGGTGGTTCATCAGAGGTAGATGAAAATGGAGAAAAGGAAAATAAATCAAATGAAAAAGATGATCTAAATGACGGGTCAGTGGATATATCTGAGAAGCTATCTGCTGCTATTGTTAATATATCGAATGGAAAAGAAGATCTAAATGAAGGGTCAAGGGATATATCTGAGAAGCTATCTGCTGCTATTGTTAATATACCGAATGGAAAGGAAGAAACTCTAACTGACGGGTCGAGGGATATATCTGAGAAGCTATCTGCTGTTCTTGTTAATGTCAATGCCAAAGAAGACTTGGTTAAACAGCATGCGAAAGTTGCTGAAGAAGCCATAGCAGGTATGTTAATAATAACTAAGTACATTTATATATTGCTTTCTGTAATTCTCGGAAAAATCACTAACTATACTCGATTACTTGATTACCATTCTATCCTTTCTTGGATATGTGTTGGTATTGGTATTGTGTGCTGCGTGTCTACGAATTATTCGGCAGCTAATTGTTGAATAAATTTTGCTTGCTTTCTGTATCGTCCGGTCTCTATTCAACAGTCACTAGTGACTGCAAAAAATCCAAATCCTAAGTTTCTCCTCATAAATGGAGTTAGGTTAGGACTTAGATAGGGTTTATCAAAAGCAAAATTCAAATTGCTTTTGAATTATAATACAACAACAACAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGGATCAAATGACGCCATAGTGTTCTATCAAAAACCATATTTGGATCCAACTCATTGACCTCTAAATCCTTTCTAATGGTTTCTCTAATGGTTTTCTTAGGTCTTTCCTCTACCTCTTATAATGTCATTATTATATTAGAATTAGAATTATTTTCTTACATTGGCATGTAGTTATCTGTTTGTATGATTCCATTTCCTGGATATATTGTTTTGCCATCCTCTTCTTTTTCTCCCTTTGTTCTAGTCTTATTGAGCCTTTTTATTTGTTTGCTTAGGCTGGGAAAAGGCTGAAAATGAAGTAGCAGTTTTAAAGAAGAAACTTGACACGGTCACTCTCAGGAATTCAAATCTTGAAGATAGAGTCACTCATCTAGATGGAGCACTTAAGGAGTGTGTTAGGCAGCTAAGACAAACAAGAGAAGAGCACGAAGCGAATATTCAAGACGCCGTAGCCGAAAAAACTCACGAATTGGAATCAGACAAAGTTAAACTCGAGAGCAAGCTCGTTGAGCTCCAGAACAAATTAGATACTTCAAATGCCAAATCTTCTGTTGAACGTGATATGCGTCAAACGGTTGAATGGTTAGAGACAGAGAATATGGCTCTCAGGCATGAGATCCTAGTTCAATCGGAAGAGCTCAAAATCAGAACTGTTGAGAGGGATTTGAGCACCCAAGCAGCTGAGACAGCTAGTAAGCAACATTTAGAAAGCATCAAGAAAGTAGCCAAGCTTGAGTCCGAGTGTCGGAGAATGAAGATAATAGCTTCAAAAGATCATAAATCCATTGCTTCATCCTCATTTTGCGTCGAATCTCTCAGAGATAGTCAGTCAGACAGTACTGAGAGGCTAACTGCGGTGGATTGTGATATCCTCAAGATGAATGGTTCAGAAACCAGGTGTGAACCAAGTTGTTCCGACTCATGGGCGTCTGCGCTAATTGCCGAGCTTGATCAATTCAAGAATGAAAAGTGCTGCCGACAAGCTGATCCATCAAGTTCTCTTAAAATAGATCTGATGGACGATTTTCTTGAAATGGAGCGACTCGCTGCATTGCCCGAGACTAAGAACGCAAGCAGCTTTGTTGAGGAGTTGGTTGTTGCCGATAAATGCGTTGACAAAGAAAGTACTCTCAGAGCTGAATTTGACATCATGACTCAGCAAATGGATGAACTAAAAGGGAAGTTAGAGAAGGTGGAAGCAGATAAAGCTGAACTAGAGATAGCTTTGATGAAAAGTGAAGTGTGTATTGAGGAGTCACATCTTCAGTTAAAGGAGGCAGTTCAGAAATTGGAGGAGCTTCAAATTGAGCTAGAAAATGCCTACAAATCAAAGCAAACAATAGAAAATCGCCTAATGAGCATGGAGGCAGACTCTCACACGCTATCTTCCAAGGTCAACTTATTAGAAGCAGAGGTTGATAAGGAAAGGGCTTTGTCACATGAAATTGCGATGAAGTGTAAGGACCTGGAGAAAGAGTTAGAAAGCAAATCGGCAATGCTTGGCTTATTAGAAGCCAACGTTGATAAGGAGAGGAACGTGTCACATGAAATTGCAATAAAATGTGAGGGTCTAGAGGAAGAGCTAGAGAGCAAACGTGCAAAGGTTGAATTGTTAGAAGCAGAGATTGTTAAGGAGAGGGTTGCGTCAGACGAAATTGCGGCCAAGTGTAAGGACCTGGCGGAAGAGTTTGAAAGGAAATGTGCAAAGGTTGACTTCTTAGAAGCAGAGGTTGAAAAGGAGAGGGCCATGTCTGAAGAAATTGCAATGAAGTGTAGGGAATTGGAGGAAGAGATACTCAGGCCAACAGCTAGCTTGTATGGAGAAAAGAAAATCAAGCAGGTTGGACATCATTGACATCTATAAAATGATTGCATTCCTCAAACTATACTTCATAGAAATTTATTTCATAAAAATAGGTTATTGGAAAATAACATCCAAGATATTATAGGTTTGATATCATTAACTAGGTTATATTTTGCTTTTATTTTGGACTATTACTTATGTTTTTTTCCTTATATTTGAAATCGGAAGAAGTGTATATATACTTTCAACGCAGCTGCACTCATGCAATGCATTTGATCTTTTCTATGTCAGGAGGACCTAGCACTCGCGGCCGGAAAGCTTGCCGAATGCCAGAAAACAATAGCATCTTTGGGGAATCAGCTGAAATCTCTGGCTACACTTGAGGATTTCCTTATTGACACTGCTAGCATTCCCGCAAGTCCAGCAATCATTGCTCATGCGGGTGGAGAGATGTGGAGGATGCATTCAAATGGCACATTTTCACCTAAGAGAGACTCCACTTCTTCTAGGTTGGCTGACGGTAGCTCCGGTGCATCCCTGAACAAATATGAGGAAAGCTCACCACTTTCATCGTCTTCTTCTACTTCATCAGCGACCTTGCCAAATCACGCCAGTTCTGAGAAGGGTCGAATTGGTTTCGCAAAATTTTTCTCGCGAACCAAGAGTGGTATTCGGCTAGAAATTTAG
Protein sequence

>MS.gene63019.t1

MTDKKRWLWKRKSSEKSPGEAESSGSVSSHSEKYSDEQEVSKEASNGSNHSPDVTSKAVACAEDVDDCSVINEQLPDEIASTPLPTTCIINGGSSEVDENGEKENKSNEKDDLNDGSVDISEKLSAAIVNISNGKEDLNEGSRDISEKLSAAIVNIPNGKEETLTDGSRDISEKLSAVLVNVNAKEDLVKQHAKVAEEAIAGWEKAENEVAVLKKKLDTVTLRNSNLEDRVTHLDGALKECVRQLRQTREEHEANIQDAVAEKTHELESDKVKLESKLVELQNKLDTSNAKSSVERDMRQTVEWLETENMALRHEILVQSEELKIRTVERDLSTQAAETASKQHLESIKKVAKLESECRRMKIIASKDHKSIASSSFCVESLRDSQSDSTERLTAVDCDILKMNGSETRCEPSCSDSWASALIAELDQFKNEKCCRQADPSSSLKIDLMDDFLEMERLAALPETKNASSFVEELVVADKCVDKESTLRAEFDIMTQQMDELKGKLEKVEADKAELEIALMKSEVCIEESHLQLKEAVQKLEELQIELENAYKSKQTIENRLMSMEADSHTLSSKVNLLEAEVDKERALSHEIAMKCKDLEKELESKSAMLGLLEANVDKERNVSHEIAIKCEGLEEELESKRAKVELLEAEIVKERVASDEIAAKCKDLAEEFERKCAKVDFLEAEVEKERAMSEEIAMKCRELEEEILRPTASLYGEKKIKQEDLALAAGKLAECQKTIASLGNQLKSLATLEDFLIDTASIPASPAIIAHAGGEMWRMHSNGTFSPKRDSTSSRLADGSSGASLNKYEESSPLSSSSSTSSATLPNHASSEKGRIGFAKFFSRTKSGIRLEI