Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013289.t1 | XP_003602656.1 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.50E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013289.t1 | Q8GXN6 | 63.6 | 220 | 76 | 2 | 1 | 217 | 1 | 219 | 1.0e-63 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013289.t1 | G7JC58 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.0e-93 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013289 | MS.gene75052 | PPI |
| MS.gene013289 | MS.gene66354 | PPI |
| MS.gene013289 | MS.gene06372 | PPI |
| MS.gene013289 | MS.gene049254 | PPI |
| MS.gene40918 | MS.gene013289 | PPI |
| MS.gene013289 | MS.gene030307 | PPI |
| MS.gene013289 | MS.gene064025 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013289.t1 | MTR_3g096680 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.97e-150 | 417 |
| MS.gene013289.t1 | MTR_3g096680 | 90.000 | 240 | 1 | 1 | 1 | 217 | 1 | 240 | 3.43e-145 | 404 |
| MS.gene013289.t1 | MTR_3g096680 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 5.93e-91 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013289.t1 | AT5G09260 | 78.082 | 219 | 43 | 3 | 1 | 217 | 1 | 216 | 3.26e-115 | 327 |
| MS.gene013289.t1 | AT5G63880 | 73.636 | 220 | 54 | 2 | 1 | 217 | 1 | 219 | 2.75e-110 | 315 |
| MS.gene013289.t1 | AT5G63880 | 66.393 | 244 | 54 | 3 | 1 | 217 | 1 | 243 | 1.42e-104 | 301 |
Find 37 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATGAAGAGGAGATTT+TGG | 0.201044 | 3.4:-87482311 | MS.gene013289:CDS |
| GGCTGTCTTTGAAAGTTTAA+AGG | 0.219717 | 3.4:-87482701 | MS.gene013289:CDS |
| ACTGAGCAAGTTTGCGTCTC+TGG | 0.262924 | 3.4:+87483980 | None:intergenic |
| AATGTTTATCTCACTTTGTA+TGG | 0.301517 | 3.4:+87482657 | None:intergenic |
| TGAAGATGTTCAGAAACTTA+TGG | 0.330454 | 3.4:-87482635 | MS.gene013289:CDS |
| GGAACTGTGCTAGGAGCTTC+AGG | 0.332559 | 3.4:+87480817 | None:intergenic |
| TTTGGCAGAGTTTGAGAACT+TGG | 0.390056 | 3.4:-87482293 | MS.gene013289:CDS |
| GAAGAAAGATAGGGCCTTGT+TGG | 0.403435 | 3.4:-87483183 | MS.gene013289:CDS |
| AAGGAAATTAATGCAATACT+TGG | 0.407288 | 3.4:-87482349 | MS.gene013289:CDS |
| CGATCTACGTCCGTTACCTT+AGG | 0.414802 | 3.4:+87484024 | None:intergenic |
| GCATCACTCGTAGTGGTAAC+TGG | 0.415859 | 3.4:+87480745 | None:intergenic |
| AGGAAATTAATGCAATACTT+GGG | 0.470100 | 3.4:-87482348 | MS.gene013289:CDS |
| TTGCTCAACATTTATAAGCC+AGG | 0.478759 | 3.4:+87483112 | None:intergenic |
| CTGAGCAAGTTTGCGTCTCT+GGG | 0.482606 | 3.4:+87483981 | None:intergenic |
| GTCTTTGAAAGTTTAAAGGC+TGG | 0.504167 | 3.4:-87482697 | MS.gene013289:CDS |
| AACAGTTATGGAGGAACCAT+TGG | 0.511723 | 3.4:-87480602 | MS.gene013289:intron |
| CGTAGTGGTAACTGGTGCCT+TGG | 0.515200 | 3.4:+87480753 | None:intergenic |
| TTCGTGAAAAGAAGAAAGAT+AGG | 0.520278 | 3.4:-87483193 | MS.gene013289:CDS |
| TGACAAGGTTGACGAAAAGT+TGG | 0.521454 | 3.4:-87480794 | MS.gene013289:CDS |
| ACTTGCTCAGTATCAACAAA+AGG | 0.527227 | 3.4:-87483968 | MS.gene013289:intron |
| ATTATCAGCAGAAGATGAAG+AGG | 0.529769 | 3.4:-87482320 | MS.gene013289:CDS |
| GTGGTAACTGGTGCCTTGGT+TGG | 0.551235 | 3.4:+87480757 | None:intergenic |
| AATGTTCTTCAAGCTGCCAA+TGG | 0.568542 | 3.4:+87480586 | None:intergenic |
| TATTGAAGCAAGTTGACACC+TGG | 0.572175 | 3.4:-87483130 | MS.gene013289:CDS |
| ACCTTGTCAGGAACTGTGCT+AGG | 0.576734 | 3.4:+87480808 | None:intergenic |
| GGAAATTAATGCAATACTTG+GGG | 0.576994 | 3.4:-87482347 | MS.gene013289:CDS |
| TATATTCGTGAAGAAACCTA+AGG | 0.587486 | 3.4:-87484040 | MS.gene013289:CDS |
| TCGTGAAAAGAAGAAAGATA+GGG | 0.592708 | 3.4:-87483192 | MS.gene013289:CDS |
| TTTCTTCTTTAACGCCAACA+AGG | 0.596260 | 3.4:+87483169 | None:intergenic |
| TGAACTGACAAGCAAGCAGA+AGG | 0.603490 | 3.4:-87482722 | MS.gene013289:CDS |
| TCCTAGCACAGTTCCTGACA+AGG | 0.608316 | 3.4:-87480809 | MS.gene013289:CDS |
| GTTTGAGAACTTGGAAACCC+AGG | 0.622553 | 3.4:-87482284 | MS.gene013289:intron |
| CGTGAAGAAACCTAAGGTAA+CGG | 0.639718 | 3.4:-87484034 | MS.gene013289:CDS |
| TACTTCAGCATCACTCGTAG+TGG | 0.642788 | 3.4:+87480738 | None:intergenic |
| CCTTCTTGATGTTCCAACCA+AGG | 0.644842 | 3.4:-87480770 | MS.gene013289:CDS |
| CCTTGGTTGGAACATCAAGA+AGG | 0.649857 | 3.4:+87480770 | None:intergenic |
| TGATGTTGCAACAGTTATGG+AGG | 0.695628 | 3.4:-87480611 | MS.gene013289:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTTATTTTCTT+TGG | + | chr3.4:87483987-87484006 | None:intergenic | 10.0% |
| !!! | TTATTTTGAAATTTTTCAAT+CGG | + | chr3.4:87482946-87482965 | None:intergenic | 10.0% |
| !! | AAATTAGGAATATGATATAA+AGG | - | chr3.4:87483704-87483723 | MS.gene013289:intron | 15.0% |
| !! | ATTTATATTCATGTTAAAAG+AGG | + | chr3.4:87481845-87481864 | None:intergenic | 15.0% |
| !! | TTTATATTCATGTTAAAAGA+GGG | + | chr3.4:87481844-87481863 | None:intergenic | 15.0% |
| !! | TTTCTGATAATTACTTATTA+GGG | - | chr3.4:87480759-87480778 | MS.gene013289:CDS | 15.0% |
| !!! | ACATTTTGTTACTAAATAAA+TGG | + | chr3.4:87481089-87481108 | None:intergenic | 15.0% |
| !!! | CTATTTTTACAATTTTCAAT+CGG | + | chr3.4:87482890-87482909 | None:intergenic | 15.0% |
| !!! | TTTTCTGATAATTACTTATT+AGG | - | chr3.4:87480758-87480777 | MS.gene013289:CDS | 15.0% |
| !! | AAACATTGAATTCAATTGTT+TGG | - | chr3.4:87483621-87483640 | MS.gene013289:intron | 20.0% |
| !! | AATAACAGATATGAAATTGA+GGG | + | chr3.4:87480715-87480734 | None:intergenic | 20.0% |
| !! | ATGGACTTATATGTATAAAT+AGG | - | chr3.4:87480895-87480914 | MS.gene013289:intron | 20.0% |
| !! | GAGGTTATAAATTCAAAATT+AGG | - | chr3.4:87483689-87483708 | MS.gene013289:intron | 20.0% |
| !! | TAAAATCAATTCAACACTAA+CGG | - | chr3.4:87482974-87482993 | MS.gene013289:intron | 20.0% |
| !! | TAACAATGAAAATAAAGATC+TGG | + | chr3.4:87482778-87482797 | None:intergenic | 20.0% |
| !! | TAACATTAAAACAAGATGAA+GGG | - | chr3.4:87482859-87482878 | MS.gene013289:intron | 20.0% |
| !! | TCAAGAACTGTAATAAATAT+CGG | - | chr3.4:87481009-87481028 | MS.gene013289:intron | 20.0% |
| !! | TTCAAATTTGTGATTTCAAT+CGG | + | chr3.4:87483004-87483023 | None:intergenic | 20.0% |
| !! | TTTAATCATAGTATATGGAA+AGG | - | chr3.4:87482458-87482477 | MS.gene013289:intron | 20.0% |
| !!! | AAAAGTCTACTTATTTGTTT+TGG | - | chr3.4:87481600-87481619 | MS.gene013289:intron | 20.0% |
| !!! | GAAGTATCTATAAAAAGAAA+AGG | - | chr3.4:87483921-87483940 | MS.gene013289:intron | 20.0% |
| !!! | GATACTTACATTTATTTTGT+TGG | - | chr3.4:87481881-87481900 | MS.gene013289:intron | 20.0% |
| !!! | TAAATGTAAGTATCTCTTTT+AGG | + | chr3.4:87481875-87481894 | None:intergenic | 20.0% |
| !!! | TAATATAGCGTTTTAGATTT+TGG | - | chr3.4:87481299-87481318 | MS.gene013289:intron | 20.0% |
| ! | AACATAAAAAGACGTTGTTT+AGG | - | chr3.4:87483096-87483115 | MS.gene013289:intron | 25.0% |
| ! | AACATTAAAACAAGATGAAG+GGG | - | chr3.4:87482860-87482879 | MS.gene013289:intron | 25.0% |
| ! | AACCTTTGGATTAAAATAGA+TGG | - | chr3.4:87482626-87482645 | MS.gene013289:CDS | 25.0% |
| ! | AAGGAAATTAATGCAATACT+TGG | - | chr3.4:87482293-87482312 | MS.gene013289:CDS | 25.0% |
| ! | AATGTTTATCTCACTTTGTA+TGG | + | chr3.4:87481988-87482007 | None:intergenic | 25.0% |
| ! | ACCATCAGATCAAAAATAAA+CGG | + | chr3.4:87483273-87483292 | None:intergenic | 25.0% |
| ! | AGGAAATTAATGCAATACTT+GGG | - | chr3.4:87482294-87482313 | MS.gene013289:CDS | 25.0% |
| ! | ATATATATATAGAGAGAGAG+AGG | + | chr3.4:87483390-87483371 | None:intergenic | 25.0% |
| ! | ATGACATCTAGCATAAAAAA+TGG | - | chr3.4:87483545-87483564 | MS.gene013289:intron | 25.0% |
| ! | ATTGAATTCAATGTTTCGAT+TGG | + | chr3.4:87483617-87483636 | None:intergenic | 25.0% |
| ! | ATTGTAAAAATAGTGCAACT+AGG | - | chr3.4:87482897-87482916 | MS.gene013289:intron | 25.0% |
| ! | GAATAACAGATATGAAATTG+AGG | + | chr3.4:87480716-87480735 | None:intergenic | 25.0% |
| ! | GTAACATTAAAACAAGATGA+AGG | - | chr3.4:87482858-87482877 | MS.gene013289:intron | 25.0% |
| !! | AATTTTATTGGGAGTGAAAA+AGG | + | chr3.4:87482687-87482706 | None:intergenic | 25.0% |
| !! | ATTTGAAATTCATTCGAAAC+AGG | - | chr3.4:87483017-87483036 | MS.gene013289:intron | 25.0% |
| !! | TATGAATGGATTTATAAGTC+AGG | + | chr3.4:87482415-87482434 | None:intergenic | 25.0% |
| !! | TTATGTTTGAGATGTGAATT+GGG | + | chr3.4:87483083-87483102 | None:intergenic | 25.0% |
| !! | TTTATGTTTGAGATGTGAAT+TGG | + | chr3.4:87483084-87483103 | None:intergenic | 25.0% |
| !!! | CACTTTTTTGGTTATTAACT+GGG | - | chr3.4:87481275-87481294 | MS.gene013289:intron | 25.0% |
| !!! | CATGATTTTGCTTAATTTGA+AGG | - | chr3.4:87482274-87482293 | MS.gene013289:intron | 25.0% |
| !!! | TCTACTTATTTGTTTTGGTT+TGG | - | chr3.4:87481605-87481624 | MS.gene013289:intron | 25.0% |
| !!! | TGAGAATGTTTTTTAACCTT+TGG | - | chr3.4:87482612-87482631 | MS.gene013289:CDS | 25.0% |
| AAAGATCTGGTCATTAACAT+TGG | + | chr3.4:87482765-87482784 | None:intergenic | 30.0% | |
| AACAACAGTAATCAATACAG+TGG | + | chr3.4:87480922-87480941 | None:intergenic | 30.0% | |
| AAGTTCAATGAATCTAGATG+TGG | + | chr3.4:87482118-87482137 | None:intergenic | 30.0% | |
| AGAGAGTGAGTCATTATTAT+TGG | + | chr3.4:87481632-87481651 | None:intergenic | 30.0% | |
| CAAATATATTAACAGCCCAA+CGG | + | chr3.4:87482207-87482226 | None:intergenic | 30.0% | |
| CATGCAATAAGAATTTATGG+GGG | + | chr3.4:87483755-87483774 | None:intergenic | 30.0% | |
| CCATGCAATAAGAATTTATG+GGG | + | chr3.4:87483756-87483775 | None:intergenic | 30.0% | |
| GAAAGGAAAAAACTCAAGTA+AGG | + | chr3.4:87481364-87481383 | None:intergenic | 30.0% | |
| GCCATGCAATAAGAATTTAT+GGG | + | chr3.4:87483757-87483776 | None:intergenic | 30.0% | |
| GGAAAATAAAGAACACAGAA+AGG | + | chr3.4:87481381-87481400 | None:intergenic | 30.0% | |
| GGAAATTAATGCAATACTTG+GGG | - | chr3.4:87482295-87482314 | MS.gene013289:CDS | 30.0% | |
| GGAACAATTGAACTAAAGTT+TGG | - | chr3.4:87480793-87480812 | MS.gene013289:CDS | 30.0% | |
| TACCTGTTAGTATCTTTCTA+TGG | - | chr3.4:87481651-87481670 | MS.gene013289:intron | 30.0% | |
| TATAGAAGTTGACTAACTGA+TGG | - | chr3.4:87484007-87484026 | MS.gene013289:CDS | 30.0% | |
| TATATTCGTGAAGAAACCTA+AGG | - | chr3.4:87480602-87480621 | MS.gene013289:intron | 30.0% | |
| TCGTGAAAAGAAGAAAGATA+GGG | - | chr3.4:87481450-87481469 | MS.gene013289:intron | 30.0% | |
| TGAAGATGTTCAGAAACTTA+TGG | - | chr3.4:87482007-87482026 | MS.gene013289:intron | 30.0% | |
| TGCCATGCAATAAGAATTTA+TGG | + | chr3.4:87483758-87483777 | None:intergenic | 30.0% | |
| TTCGTGAAAAGAAGAAAGAT+AGG | - | chr3.4:87481449-87481468 | MS.gene013289:intron | 30.0% | |
| ! | AATGGAGGTTCTTTATTTGT+GGG | - | chr3.4:87483467-87483486 | MS.gene013289:intron | 30.0% |
| ! | ATTGAGATTTTTGTTCCGTT+GGG | - | chr3.4:87482189-87482208 | MS.gene013289:intron | 30.0% |
| ! | CACTACTTCTCATTTTCATA+TGG | - | chr3.4:87480876-87480895 | MS.gene013289:intron | 30.0% |
| ! | TAACTCAGTGTTGTTAATCT+CGG | + | chr3.4:87481188-87481207 | None:intergenic | 30.0% |
| ! | TAATGGAGGTTCTTTATTTG+TGG | - | chr3.4:87483466-87483485 | MS.gene013289:intron | 30.0% |
| ! | TATGTTTGAGATGTGAATTG+GGG | + | chr3.4:87483082-87483101 | None:intergenic | 30.0% |
| !! | AGAAGGCGTGAAAATTTTAT+TGG | + | chr3.4:87482699-87482718 | None:intergenic | 30.0% |
| !! | CTGGCTTTAATCATAGTATA+TGG | - | chr3.4:87482453-87482472 | MS.gene013289:intron | 30.0% |
| !! | GAAATTGAGGGTATTGAAAA+AGG | + | chr3.4:87480703-87480722 | None:intergenic | 30.0% |
| !! | GAAGGCGTGAAAATTTTATT+GGG | + | chr3.4:87482698-87482717 | None:intergenic | 30.0% |
| !! | TTTATTTTCTTTGGGAGAGA+GGG | + | chr3.4:87483978-87483997 | None:intergenic | 30.0% |
| !!! | AGCCATCTATTTTAATCCAA+AGG | + | chr3.4:87482631-87482650 | None:intergenic | 30.0% |
| !!! | GCACTTTTTTGGTTATTAAC+TGG | - | chr3.4:87481274-87481293 | MS.gene013289:intron | 30.0% |
| !!! | TTTTATTTTCTTTGGGAGAG+AGG | + | chr3.4:87483979-87483998 | None:intergenic | 30.0% |
| AAAATGAATTAGCTGGACGT+TGG | - | chr3.4:87481243-87481262 | MS.gene013289:intron | 35.0% | |
| AAAGCTGCAGAAAATCTGAA+TGG | - | chr3.4:87483187-87483206 | MS.gene013289:CDS | 35.0% | |
| AACATTGCTTAGAGAAGAGA+TGG | + | chr3.4:87483648-87483667 | None:intergenic | 35.0% | |
| AACTGAAAAATCCATGTACC+TGG | + | chr3.4:87482379-87482398 | None:intergenic | 35.0% | |
| AAGCTGCAGAAAATCTGAAT+GGG | - | chr3.4:87483188-87483207 | MS.gene013289:CDS | 35.0% | |
| ACACCAGATACAATCAAAGA+CGG | + | chr3.4:87481219-87481238 | None:intergenic | 35.0% | |
| ACAGCTGGAACAAATATGAA+TGG | + | chr3.4:87482429-87482448 | None:intergenic | 35.0% | |
| ACTCAATGGTTCAATAGACA+AGG | + | chr3.4:87481769-87481788 | None:intergenic | 35.0% | |
| ACTCATACCACAAGTAACTT+GGG | + | chr3.4:87483525-87483544 | None:intergenic | 35.0% | |
| ACTGAAAAATCCATGTACCT+GGG | + | chr3.4:87482378-87482397 | None:intergenic | 35.0% | |
| ACTTGCTCAGTATCAACAAA+AGG | - | chr3.4:87480674-87480693 | MS.gene013289:intron | 35.0% | |
| AGCCATAGAAAGATACTAAC+AGG | + | chr3.4:87481656-87481675 | None:intergenic | 35.0% | |
| ATCTCTTCTGAACAGGATAT+CGG | + | chr3.4:87481803-87481822 | None:intergenic | 35.0% | |
| ATTATCAGCAGAAGATGAAG+AGG | - | chr3.4:87482322-87482341 | MS.gene013289:CDS | 35.0% | |
| CAATAAGAATTTATGGGGGA+AGG | + | chr3.4:87483751-87483770 | None:intergenic | 35.0% | |
| CCCCATAAATTCTTATTGCA+TGG | - | chr3.4:87483753-87483772 | MS.gene013289:intron | 35.0% | |
| CGTTGGGCTGTTAATATATT+TGG | - | chr3.4:87482205-87482224 | MS.gene013289:intron | 35.0% | |
| CTAAATTTCCTCTATGCTAC+AGG | + | chr3.4:87481041-87481060 | None:intergenic | 35.0% | |
| CTCAATTATCTCTTCTGAAC+AGG | + | chr3.4:87481810-87481829 | None:intergenic | 35.0% | |
| CTTATTAGGGCTAAAAGAGA+AGG | - | chr3.4:87480772-87480791 | MS.gene013289:CDS | 35.0% | |
| CTTTGATTGTATCTGGTGTA+CGG | - | chr3.4:87481220-87481239 | MS.gene013289:intron | 35.0% | |
| GGCATATCGTAGAACAATAT+AGG | + | chr3.4:87481068-87481087 | None:intergenic | 35.0% | |
| TACCTGTTAGCATCTTTCTA+TGG | - | chr3.4:87481731-87481750 | MS.gene013289:intron | 35.0% | |
| TACTCATACCACAAGTAACT+TGG | + | chr3.4:87483526-87483545 | None:intergenic | 35.0% | |
| TATCAGCCGAGACTAATTAA+TGG | - | chr3.4:87483449-87483468 | MS.gene013289:intron | 35.0% | |
| TGCTAACAGGTAGAGATTAT+CGG | + | chr3.4:87481723-87481742 | None:intergenic | 35.0% | |
| TGTACGGAAAATGAATTAGC+TGG | - | chr3.4:87481236-87481255 | MS.gene013289:intron | 35.0% | |
| TTGCTCAACATTTATAAGCC+AGG | + | chr3.4:87481533-87481552 | None:intergenic | 35.0% | |
| TTTCTTCTTTAACGCCAACA+AGG | + | chr3.4:87481476-87481495 | None:intergenic | 35.0% | |
| ! | AACTTGAGTGTACCTTTTTG+GGG | - | chr3.4:87482133-87482152 | MS.gene013289:intron | 35.0% |
| ! | AATTCTCATCTACTTGCTGA+TGG | - | chr3.4:87482247-87482266 | MS.gene013289:intron | 35.0% |
| ! | AGAAGATGAAGAGGAGATTT+TGG | - | chr3.4:87482331-87482350 | MS.gene013289:CDS | 35.0% |
| ! | GAACCTCCATTAATTAGTCT+CGG | + | chr3.4:87483458-87483477 | None:intergenic | 35.0% |
| ! | GAACTTGAGTGTACCTTTTT+GGG | - | chr3.4:87482132-87482151 | MS.gene013289:intron | 35.0% |
| ! | GATTGAGATTTTTGTTCCGT+TGG | - | chr3.4:87482188-87482207 | MS.gene013289:intron | 35.0% |
| ! | GGCTGTCTTTGAAAGTTTAA+AGG | - | chr3.4:87481941-87481960 | MS.gene013289:intron | 35.0% |
| ! | GTCTTTGAAAGTTTAAAGGC+TGG | - | chr3.4:87481945-87481964 | MS.gene013289:intron | 35.0% |
| ! | TGAACTTGAGTGTACCTTTT+TGG | - | chr3.4:87482131-87482150 | MS.gene013289:intron | 35.0% |
| ! | TTGATAAGCTTTTGCTTCAG+CGG | + | chr3.4:87482039-87482058 | None:intergenic | 35.0% |
| !!! | GCCGTTTATTTTTGATCTGA+TGG | - | chr3.4:87483269-87483288 | MS.gene013289:intron | 35.0% |
| !!! | TGGTGATGATTGCACTTTTT+TGG | - | chr3.4:87481263-87481282 | MS.gene013289:intron | 35.0% |
| AACAGTTATGGAGGAACCAT+TGG | - | chr3.4:87484040-87484059 | MS.gene013289:CDS | 40.0% | |
| ACAGGTAGAGATTATCGGAA+AGG | + | chr3.4:87481718-87481737 | None:intergenic | 40.0% | |
| AGACCGTCTTTGATTGTATC+TGG | - | chr3.4:87481213-87481232 | MS.gene013289:intron | 40.0% | |
| AGCCATAGAAAGATGCTAAC+AGG | + | chr3.4:87481736-87481755 | None:intergenic | 40.0% | |
| ATAGACTAAGTGAGGCACAT+GGG | - | chr3.4:87483219-87483238 | MS.gene013289:CDS | 40.0% | |
| ATTAAAGCCAGTAGTACAGC+TGG | + | chr3.4:87482444-87482463 | None:intergenic | 40.0% | |
| ATTTGTTCCAGCTGTACTAC+TGG | - | chr3.4:87482434-87482453 | MS.gene013289:intron | 40.0% | |
| CAGGTAGAGATTATCGGAAA+GGG | + | chr3.4:87481717-87481736 | None:intergenic | 40.0% | |
| CGGAAAGGGAAAATACTCAA+TGG | + | chr3.4:87481783-87481802 | None:intergenic | 40.0% | |
| CGTGAAGAAACCTAAGGTAA+CGG | - | chr3.4:87480608-87480627 | MS.gene013289:intron | 40.0% | |
| CTTCAATAACAGCATCAAGC+TGG | + | chr3.4:87481402-87481421 | None:intergenic | 40.0% | |
| GAAAATCTGAATGGGTATGG+TGG | - | chr3.4:87483196-87483215 | MS.gene013289:CDS | 40.0% | |
| GAGCTAGTGATTGACTATAG+AGG | - | chr3.4:87483670-87483689 | MS.gene013289:intron | 40.0% | |
| GATCTGGTCATTAACATTGG+TGG | + | chr3.4:87482762-87482781 | None:intergenic | 40.0% | |
| GCAGAAAATCTGAATGGGTA+TGG | - | chr3.4:87483193-87483212 | MS.gene013289:CDS | 40.0% | |
| TACCACAAGTAACTTGGGTT+CGG | + | chr3.4:87483520-87483539 | None:intergenic | 40.0% | |
| TCTATAGCACTGTAGCATAG+AGG | - | chr3.4:87481133-87481152 | MS.gene013289:intron | 40.0% | |
| TCTATGCTACAGTGCTATAG+AGG | + | chr3.4:87481134-87481153 | None:intergenic | 40.0% | |
| TCTGAACAGGATATCGGAAA+GGG | + | chr3.4:87481797-87481816 | None:intergenic | 40.0% | |
| TGACAAGGTTGACGAAAAGT+TGG | - | chr3.4:87483848-87483867 | MS.gene013289:intron | 40.0% | |
| TGATGTTGCAACAGTTATGG+AGG | - | chr3.4:87484031-87484050 | MS.gene013289:CDS | 40.0% | |
| TTCTGAACAGGATATCGGAA+AGG | + | chr3.4:87481798-87481817 | None:intergenic | 40.0% | |
| TTTCAGAAGCAGCAAGAGTA+AGG | + | chr3.4:87482087-87482106 | None:intergenic | 40.0% | |
| TTTGACGTGCACAATGAGAA+TGG | + | chr3.4:87480738-87480757 | None:intergenic | 40.0% | |
| TTTGGCAGAGTTTGAGAACT+TGG | - | chr3.4:87482349-87482368 | MS.gene013289:CDS | 40.0% | |
| ! | AACTTTTCGTCAACCTTGTC+AGG | + | chr3.4:87483849-87483868 | None:intergenic | 40.0% |
| ! | ACTTGAGTGTACCTTTTTGG+GGG | - | chr3.4:87482134-87482153 | MS.gene013289:intron | 40.0% |
| ! | TATTGAAGCAAGTTGACACC+TGG | - | chr3.4:87481512-87481531 | MS.gene013289:intron | 40.0% |
| !! | GTTAGGCATTGAAGTTGTAC+TGG | - | chr3.4:87482162-87482181 | MS.gene013289:intron | 40.0% |
| !! | TATGGTGGATAGACTAAGTG+AGG | - | chr3.4:87483211-87483230 | MS.gene013289:CDS | 40.0% |
| AACTTGGAAACCCAGGTACA+TGG | - | chr3.4:87482365-87482384 | MS.gene013289:intron | 45.0% | |
| CAGCCGAGACTAATTAATGG+AGG | - | chr3.4:87483452-87483471 | MS.gene013289:intron | 45.0% | |
| CCTTCTTGATGTTCCAACCA+AGG | - | chr3.4:87483872-87483891 | MS.gene013289:intron | 45.0% | |
| CCTTGGTTGGAACATCAAGA+AGG | + | chr3.4:87483875-87483894 | None:intergenic | 45.0% | |
| CTGGTCATTAACATTGGTGG+TGG | + | chr3.4:87482759-87482778 | None:intergenic | 45.0% | |
| GAATTGGAGGTTGGAGAAGA+AGG | + | chr3.4:87482716-87482735 | None:intergenic | 45.0% | |
| GATAGACTAAGTGAGGCACA+TGG | - | chr3.4:87483218-87483237 | MS.gene013289:CDS | 45.0% | |
| GATCTTCGACTGCAAACTGT+TGG | + | chr3.4:87483803-87483822 | None:intergenic | 45.0% | |
| GGCTGATGTTGCAACAGTTA+TGG | - | chr3.4:87484028-87484047 | MS.gene013289:CDS | 45.0% | |
| GTTTGAGAACTTGGAAACCC+AGG | - | chr3.4:87482358-87482377 | MS.gene013289:intron | 45.0% | |
| TACTTCAGCATCACTCGTAG+TGG | + | chr3.4:87483907-87483926 | None:intergenic | 45.0% | |
| TGAAAATGGGGGAGTGGAAT+TGG | + | chr3.4:87482732-87482751 | None:intergenic | 45.0% | |
| TGAACTGACAAGCAAGCAGA+AGG | - | chr3.4:87481920-87481939 | MS.gene013289:intron | 45.0% | |
| ! | GAAGAAAGATAGGGCCTTGT+TGG | - | chr3.4:87481459-87481478 | MS.gene013289:intron | 45.0% |
| ! | GTGTCATTCCTCTAGCAACA+AGG | + | chr3.4:87483425-87483444 | None:intergenic | 45.0% |
| !! | CGGAAAGGGAAAGTACTCAA+TGG | + | chr3.4:87481703-87481722 | None:intergenic | 45.0% |
| !! | GTCATTAACATTGGTGGTGG+TGG | + | chr3.4:87482756-87482775 | None:intergenic | 45.0% |
| !! | TGGTGGTGGTGGTTGAAAAT+GGG | + | chr3.4:87482745-87482764 | None:intergenic | 45.0% |
| !! | TTGGTGGTGGTGGTTGAAAA+TGG | + | chr3.4:87482746-87482765 | None:intergenic | 45.0% |
| !! | TTTTCTTTGGGAGAGAGGGA+CGG | + | chr3.4:87483974-87483993 | None:intergenic | 45.0% |
| !!! | TTTTTTATTTTATTTTCTTT+GGG | + | chr3.4:87483986-87484005 | None:intergenic | 5.0% |
| AAATGGGGGAGTGGAATTGG+AGG | + | chr3.4:87482729-87482748 | None:intergenic | 50.0% | |
| ACCTTGTCAGGAACTGTGCT+AGG | + | chr3.4:87483837-87483856 | None:intergenic | 50.0% | |
| ACTGAGCAAGTTTGCGTCTC+TGG | + | chr3.4:87480665-87480684 | None:intergenic | 50.0% | |
| AGCTGCATAATGTGACTGCC+TGG | - | chr3.4:87483580-87483599 | MS.gene013289:intron | 50.0% | |
| CACCGAACCCAAGTTACTTG+TGG | - | chr3.4:87483515-87483534 | MS.gene013289:intron | 50.0% | |
| CGATCTACGTCCGTTACCTT+AGG | + | chr3.4:87480621-87480640 | None:intergenic | 50.0% | |
| CGATTGGCAGCATAACTACC+AGG | + | chr3.4:87483601-87483620 | None:intergenic | 50.0% | |
| CTGAGCAAGTTTGCGTCTCT+GGG | + | chr3.4:87480664-87480683 | None:intergenic | 50.0% | |
| GAGAGACACCTTGTTGCTAG+AGG | - | chr3.4:87483414-87483433 | MS.gene013289:intron | 50.0% | |
| GCATCACTCGTAGTGGTAAC+TGG | + | chr3.4:87483900-87483919 | None:intergenic | 50.0% | |
| TCCTAGCACAGTTCCTGACA+AGG | - | chr3.4:87483833-87483852 | MS.gene013289:intron | 50.0% | |
| ! | TTTCTTTGGGAGAGAGGGAC+GGG | + | chr3.4:87483973-87483992 | None:intergenic | 50.0% |
| !! | AGTGTACCTTTTTGGGGGAC+GGG | - | chr3.4:87482139-87482158 | MS.gene013289:intron | 50.0% |
| !! | GAGTGTACCTTTTTGGGGGA+CGG | - | chr3.4:87482138-87482157 | MS.gene013289:intron | 50.0% |
| !! | GGTGGTGGTGGTTGAAAATG+GGG | + | chr3.4:87482744-87482763 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGTTGAAAATGG+GGG | + | chr3.4:87482743-87482762 | None:intergenic | 50.0% |
| CGTAGTGGTAACTGGTGCCT+TGG | + | chr3.4:87483892-87483911 | None:intergenic | 55.0% | |
| GGAACTGTGCTAGGAGCTTC+AGG | + | chr3.4:87483828-87483847 | None:intergenic | 55.0% | |
| GGCTGTAGCCTGTAGCATAG+AGG | - | chr3.4:87481030-87481049 | MS.gene013289:intron | 55.0% | |
| GGTGGTTGAAAATGGGGGAG+TGG | + | chr3.4:87482738-87482757 | None:intergenic | 55.0% | |
| GTGGTAACTGGTGCCTTGGT+TGG | + | chr3.4:87483888-87483907 | None:intergenic | 55.0% | |
| ! | GTGCTATAGAGGTGCAGCAG+CGG | + | chr3.4:87481123-87481142 | None:intergenic | 55.0% |
| ! | TTCTTTGGGAGAGAGGGACG+GGG | + | chr3.4:87483972-87483991 | None:intergenic | 55.0% |
| !! | GTGTACCTTTTTGGGGGACG+GGG | - | chr3.4:87482140-87482159 | MS.gene013289:intron | 55.0% |
| CCTAACCCCGTCCCCCAAAA+AGG | + | chr3.4:87482148-87482167 | None:intergenic | 60.0% | |
| GGGGGAGTGGAATTGGAGGT+TGG | + | chr3.4:87482725-87482744 | None:intergenic | 60.0% | |
| ! | TATAGAGGTGCAGCAGCGGC+TGG | + | chr3.4:87481119-87481138 | None:intergenic | 60.0% |
| ! | TCTTTGGGAGAGAGGGACGG+GGG | + | chr3.4:87483971-87483990 | None:intergenic | 60.0% |
| !! | CCTTTTTGGGGGACGGGGTT+AGG | - | chr3.4:87482145-87482164 | MS.gene013289:intron | 60.0% |
| ! | GGGGTGGGTTCAGAGGGATG+AGG | + | chr3.4:87483952-87483971 | None:intergenic | 65.0% |
| TGGGAGAGAGGGACGGGGGT+GGG | + | chr3.4:87483967-87483986 | None:intergenic | 70.0% | |
| TTGGGAGAGAGGGACGGGGG+TGG | + | chr3.4:87483968-87483987 | None:intergenic | 70.0% | |
| ! | AGGGACGGGGGTGGGTTCAG+AGG | + | chr3.4:87483959-87483978 | None:intergenic | 70.0% |
| ! | GGGACGGGGGTGGGTTCAGA+GGG | + | chr3.4:87483958-87483977 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87480594 | 87484070 | 87480594 | ID=MS.gene013289 |
| chr3.4 | mRNA | 87480594 | 87484070 | 87480594 | ID=MS.gene013289.t1;Parent=MS.gene013289 |
| chr3.4 | exon | 87483969 | 87484070 | 87483969 | ID=MS.gene013289.t1.exon1;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87483969 | 87484070 | 87483969 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| chr3.4 | exon | 87483109 | 87483261 | 87483109 | ID=MS.gene013289.t1.exon2;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87483109 | 87483261 | 87483109 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| chr3.4 | exon | 87482603 | 87482755 | 87482603 | ID=MS.gene013289.t1.exon3;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87482603 | 87482755 | 87482603 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| chr3.4 | exon | 87482285 | 87482368 | 87482285 | ID=MS.gene013289.t1.exon4;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87482285 | 87482368 | 87482285 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| chr3.4 | exon | 87480722 | 87480857 | 87480722 | ID=MS.gene013289.t1.exon5;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87480722 | 87480857 | 87480722 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| chr3.4 | exon | 87480594 | 87480619 | 87480594 | ID=MS.gene013289.t1.exon6;Parent=MS.gene013289.t1 |
| chr3.4 | CDS | 87480594 | 87480619 | 87480594 | ID=cds.MS.gene013289.t1;Parent=MS.gene013289.t1 |
| Gene Sequence |
| Protein sequence |
