AlfalfaGEDB | MS.gene06372

M. sativa cultivar XinJiangDaYe / MS.gene06372

KEGG: K12195
GO: GO:0006810 GO:0007034 GO:0008150 GO:0051179 GO:0051234
PFAM: PF03357.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06372.t1	XP_003602656.1	100	217	0	0	1	217	1	217	2.20E-94	355.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06372.t1	Q8GXN6	63.6	220	76	2	1	217	1	219	2.3e-63	243.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06372.t1	G7JC58	100.0	217	0	0	1	217	1	217	1.6e-94	355.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene06372	0.855128	7.76E-62	-1.69E-46
MS.gene04918	MS.gene06372	0.816595	5.10E-52	-1.69E-46
MS.gene04920	MS.gene06372	0.82147	3.97E-53	-1.69E-46
MS.gene049254	MS.gene06372	0.97739	1.10E-143	-1.69E-46
MS.gene049264	MS.gene06372	0.80156	8.50E-49	-1.69E-46
MS.gene049283	MS.gene06372	0.829774	4.26E-55	-1.69E-46
MS.gene049343	MS.gene06372	0.807541	4.81E-50	-1.69E-46
MS.gene049368	MS.gene06372	0.807844	4.15E-50	-1.69E-46
MS.gene049404	MS.gene06372	0.818875	1.56E-52	-1.69E-46
MS.gene049499	MS.gene06372	0.858445	8.20E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013289	MS.gene06372	PPI
MS.gene049254	MS.gene06372	PPI
MS.gene06372	MS.gene030307	PPI
MS.gene06372	MS.gene75052	PPI
MS.gene064025	MS.gene06372	PPI
MS.gene40918	MS.gene06372	PPI
MS.gene66354	MS.gene06372	PPI

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Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06372.t1	MTR_3g096680	100.000	217	0	1	217	1	217	4.09e-152	421
MS.gene06372.t1	MTR_3g096680	90.417	240	1	1	217	1	240	9.50e-147	408
MS.gene06372.t1	MTR_3g096680	100.000	136	0	1	136	1	136	4.61e-91	264

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06372.t1	AT5G09260	78.539	219	42	3	1	217	1	216	6.52e-117	332
MS.gene06372.t1	AT5G63880	74.091	220	53	2	1	217	1	219	5.34e-112	320
MS.gene06372.t1	AT5G63880	66.803	244	53	3	1	217	1	243	3.22e-106	306

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Find 38 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTTATGGAGGAACCAT+TGG	0.511723	3.1:-77088026	MS.gene06372:intron
AAGGAAATTAATGCAATACT+TGG	0.407288	3.1:-77089672	MS.gene06372:CDS
AATGTTCTTCAAGCTGCCAA+TGG	0.568542	3.1:+77088010	None:intergenic
AATGTTTATCTCACTTTGTA+TGG	0.301517	3.1:+77089980	None:intergenic
ACCTTGTCAGGAACTGTGCT+AGG	0.576734	3.1:+77088232	None:intergenic
ACTGAGCAAGTTTGCGTCTC+TGG	0.262924	3.1:+77091293	None:intergenic
ACTTGCTCAGTATCAACAAA+AGG	0.527227	3.1:-77091281	MS.gene06372:intron
AGAAGATGAAGAGGAGATTT+TGG	0.201044	3.1:-77089634	MS.gene06372:CDS
AGGAAATTAATGCAATACTT+GGG	0.470100	3.1:-77089671	MS.gene06372:CDS
ATTATCAGCAGAAGATGAAG+AGG	0.529769	3.1:-77089643	MS.gene06372:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCTGGTCATTAACAT+TGG	+	chr3.1:77090080-77090099	None:intergenic	30.0%
AACAACAGTAATCAATACAG+TGG	+	chr3.1:77088346-77088365	None:intergenic	30.0%
AAGTTCAATGAATCTAGATG+TGG	+	chr3.1:77089532-77089551	None:intergenic	30.0%
AGAGAGTGAGTCATTATTAT+TGG	+	chr3.1:77089046-77089065	None:intergenic	30.0%
CATGCAATAAGAATTTATGG+GGG	+	chr3.1:77091068-77091087	None:intergenic	30.0%
CCATGCAATAAGAATTTATG+GGG	+	chr3.1:77091069-77091088	None:intergenic	30.0%
CTAAATTTCCTCTATGCTAT+AGG	+	chr3.1:77088465-77088484	None:intergenic	30.0%
GAAAGGAAAAAACTCAAGTA+AGG	+	chr3.1:77088778-77088797	None:intergenic	30.0%
GCCATGCAATAAGAATTTAT+GGG	+	chr3.1:77091070-77091089	None:intergenic	30.0%
GGAAAATAAAGAACACAGAA+AGG	+	chr3.1:77088795-77088814	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	77088018	77091383	77088018	ID=MS.gene06372
chr3.1	mRNA	77088018	77091383	77088018	ID=MS.gene06372.t1;Parent=MS.gene06372
chr3.1	exon	77091282	77091383	77091282	ID=MS.gene06372.t1.exon1;Parent=MS.gene06372.t1
chr3.1	CDS	77091282	77091383	77091282	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1
chr3.1	exon	77090432	77090584	77090432	ID=MS.gene06372.t1.exon2;Parent=MS.gene06372.t1
chr3.1	CDS	77090432	77090584	77090432	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1
chr3.1	exon	77089926	77090078	77089926	ID=MS.gene06372.t1.exon3;Parent=MS.gene06372.t1
chr3.1	CDS	77089926	77090078	77089926	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1
chr3.1	exon	77089608	77089691	77089608	ID=MS.gene06372.t1.exon4;Parent=MS.gene06372.t1
chr3.1	CDS	77089608	77089691	77089608	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1
chr3.1	exon	77088146	77088281	77088146	ID=MS.gene06372.t1.exon5;Parent=MS.gene06372.t1
chr3.1	CDS	77088146	77088281	77088146	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1
chr3.1	exon	77088018	77088043	77088018	ID=MS.gene06372.t1.exon6;Parent=MS.gene06372.t1
chr3.1	CDS	77088018	77088043	77088018	ID=cds.MS.gene06372.t1;Parent=MS.gene06372.t1

Gene Sequence

>MS.gene06372

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGGTTACCTTTTTCAATACCCTTAATTTCATATCTGTTATTCCATTCTCATTGTGCACGTCAAATTTTCTGATAATTACTTATTAGGGCTAAAAGAGAATGAACAATTGAACTAAAGTTTGGATCAAAAAGTAATCTAACTCATGTATAGTTAGTTTAGATTTAGTTAAGTTAGTTATTGTTCACTACTTCTCATTTTCATATGGACTTATATGTATAAATAGGACCACTGTATTGATTACTGTTGTTCAATACTTCAATTGATAAAGTCGTCAATAATATTTGTTCATTAGTTTTACATACTTTTCAAGTTATATCAAGAATAGTAATAAATATCGGCTATAGCCTATAGCATAGAGGAAATTTAGCAAACCTCTATTGTTCTACGATATGCCATTTATTTAGTAACAAAATGTTGTCAAACCAGCCGCTATAGCACTGTAGCATAGAGGAATTTGAATAAAAACTCTTTTTTGTGTGATCCGAGATTAACAACACTGAGCTAAAATTAGACCGTCTTTGATTGTATCTGGTGTATGGAAAATGAATCAGCTGGACGTTGGTGATGATTGCACTTTTTTGGTTATTAACTGGGATAATATAGTGTTTTAGATTTTGGATAAAACATAAGCACTGAAGTATCAAAGATGATACATTGCCTTACTTGAGTTTTTTCCTTTCTGTGTTCTTTATTTTCCAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAAGTAATATTTTTATTATTGATTTTATTATTCTGTCATTTATTTATAAAAGTCTACTTATTTGTTTTGGTTTGGACCAATAATAATGACTCACTCTCTACCTGTTTGTATCTTTCTATGGCTTTACATTTGTTCTCATCTGTTGAGCCATTGAGTACTTTCCCTTTCCGATAATCTCTACCTGTTAGCATCTTTCTATGGCTTTACAAACGTCCTTGTCTATTGAGCCATTGAGTATTTTCCCTTTCCGATATCCTGTTCAGAAGAGATAATTGAGTGACAACACTGCCCTCTTTTAACATGAATATAAATTTCTACGCCTAAAAGAGATACTTACATTTATTTTGTTGGTTCAGTTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGTGAGCTTGATTTCACTCTTATCCTTACTCTTGCTGCTTCTGAAAACTGATTTCCACATCTAGATTCATTGAACTTGAGTGTACCTTTTTGGGGGACGGGGTTAGGCATTGAAGTTGTACTGGCTTGATTGAGATTTTTGTTCTGTTGGGCTGTTAATATATTTGGCTGCTACTTTTTCTTTGTCAATTCTCATCTACTTGCTGATGGTTTACATGATTTTGCTTAATTTGAAGGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGGTACATGGATTTTTCAGTTTTTGTGATTTTGTCCTGACTTATAAATCCATTCATATTTGTTCCAGCTGTACTACTGGCTTTAATCATAGTATATGGAAAGGACACATTACATGACATGTTTATATGAGAATGATGAGAATGTTTTTTAACCTTTAGATTAAAATAGATGGCTGAGATTATAAGCTCATATGTTAGACACGCGCATCCTTTTTCACTCCCAATAAAATTTTCACGCCTTCTTCTCCAGCCTCCAATTCCACTCCCCCATTTTCAACCACCACCACCAATGTTAATGACCAGATCTTTATTTTCATTGTTATGATTATTGATACAAATAAAGTTTAATTATTGAAAATCAAAATAAATCTTTTTCACGTAACATTAAAACAAGATGAAGGGGAGTTCCGATTGAAAATTGTAAAAATAGTGCAACTAGGATTTTTCACGTAACTATGTGTTTCCGATTGAAAAATTTCAAAATAAATCTCTTTTAAAATCAATTCAACACTAACGGAGTTCCGATTGAAATCACAAATTTGAAATTCATTCGAAACAGGAATACACTTAATTGAAGTTGATTAAAAAACAAACAAAAACCCCAATTCACATCTCAATCATAAAAAGACGTTGTTTAGGTTGATGAAAGAGATGTTTCTATAGATCTGCTTGTAGAAAGAAATTACAGTGAAGATTTGATAGATGAAAAAGCTGCAGAAAATCTGAATGGGTATGGTGGATAGACTAAGTGAGGCACATGGGTTGTTTAAATAAGAATTTTTAATCACAGCCGTTTATTTTTGATCTGATGGTTGATAATTATTCTCATGATTCTCATATAACATACTCATTCTCATAGTATACATCCTCTCTCTCTCTCTCTCTCTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACCTTGTTGCTAGAGGAATGACACATTATATCAGCCGAGACTAATTAATGGAGGTTCTTTATTTGTGGGTTTTATTTGTTTTGATTTTGTTATTCACCGAACCCAAGTTACTTGTGGTATGAGTATGACATCTAGCATAAAAAATGGTGTACTGCAGTTAGCTGCATAATGTGACTGCCTGGTAGTTATGCTGCCAATCGAAACATTGAATTCAATTGTTTGGCCCATCTCTTCTCTAAGCAATGTTTTGAGCTAGTGATTGACTATAGAGGTTATAAATTCAAAATTAGGAATATGATATAAAGGAGACATGTATATGCAATACATCCTTCCCCCATAAATTCTTATTGCATGGCAATTGACTGAATTCATAATATTTCCAACAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCCTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGGTATTGCCTCATCCCTCTGAACCCACCCCCGTCCCTCTCTCCCAAAGAAAATAAAATAAAAAAGTATAGAAGTTGACTAACTGATGGCTGATGTTGCAACAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>MS.gene06372.t1

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA