Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75052.t1 | XP_013453212.1 | 100 | 220 | 0 | 0 | 1 | 220 | 1 | 220 | 1.30E-78 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75052.t1 | Q9SZE4 | 86.5 | 163 | 20 | 1 | 1 | 163 | 1 | 161 | 1.2e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75052.t1 | I3SEH2 | 100.0 | 220 | 0 | 0 | 1 | 220 | 1 | 220 | 9.7e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene75052 | -0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene75052 | 0.831904 | 1.28E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene75052 | 0.814243 | 1.70E-51 | -1.69E-46 |
| MS.gene052685 | MS.gene75052 | 0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene75052 | 0.828001 | 1.15E-54 | -1.69E-46 |
| MS.gene054222 | MS.gene75052 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene75052 | 0.805073 | 1.59E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene75052 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene75052 | 0.807471 | 4.97E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene75052 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene75052 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene060697 | MS.gene75052 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene75052 | 0.806479 | 8.06E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene75052 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene75052 | 0.807339 | 5.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013289 | MS.gene75052 | PPI |
| MS.gene40918 | MS.gene75052 | PPI |
| MS.gene06372 | MS.gene75052 | PPI |
| MS.gene049254 | MS.gene75052 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75052.t1 | MTR_6g090515 | 97.273 | 220 | 6 | 0 | 1 | 220 | 1 | 220 | 4.22e-154 | 426 |
| MS.gene75052.t1 | MTR_8g102030 | 83.182 | 220 | 35 | 2 | 1 | 220 | 5 | 222 | 3.20e-109 | 313 |
| MS.gene75052.t1 | MTR_8g102020 | 70.000 | 220 | 47 | 3 | 1 | 220 | 5 | 205 | 4.36e-81 | 241 |
| MS.gene75052.t1 | MTR_1g090490 | 29.577 | 213 | 127 | 6 | 4 | 194 | 3 | 214 | 7.80e-14 | 68.2 |
| MS.gene75052.t1 | MTR_1g090490 | 29.577 | 213 | 127 | 6 | 4 | 194 | 3 | 214 | 8.82e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75052.t1 | AT2G19830 | 81.982 | 222 | 29 | 5 | 1 | 220 | 1 | 213 | 2.07e-110 | 315 |
| MS.gene75052.t1 | AT4G29160 | 85.068 | 221 | 30 | 2 | 1 | 220 | 1 | 219 | 4.49e-110 | 315 |
| MS.gene75052.t1 | AT4G29160 | 85.068 | 221 | 30 | 2 | 1 | 220 | 1 | 219 | 4.49e-110 | 315 |
| MS.gene75052.t1 | AT2G19830 | 82.828 | 198 | 26 | 3 | 24 | 220 | 4 | 194 | 1.37e-98 | 285 |
| MS.gene75052.t1 | AT4G29160 | 86.667 | 180 | 23 | 1 | 42 | 220 | 13 | 192 | 6.62e-96 | 278 |
| MS.gene75052.t1 | AT5G04850 | 29.143 | 175 | 111 | 3 | 4 | 169 | 3 | 173 | 4.34e-13 | 66.6 |
| MS.gene75052.t1 | AT3G10640 | 29.778 | 225 | 113 | 7 | 4 | 194 | 3 | 216 | 8.66e-13 | 65.9 |
| MS.gene75052.t1 | AT5G04850 | 28.313 | 166 | 106 | 3 | 4 | 160 | 3 | 164 | 8.42e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAGGAGTCGGCTTTGC+AGG | 0.229972 | 6.3:+83671890 | None:intergenic |
| AGATGAATTGGCAGCTTTGC+AGG | 0.277136 | 6.3:-83671867 | MS.gene75052:CDS |
| ACTAGAAATGCTCGAGAAAA+AGG | 0.286111 | 6.3:-83673238 | MS.gene75052:CDS |
| TTGAATCTGCTTCATGTTCT+CGG | 0.295683 | 6.3:+83672577 | None:intergenic |
| GGAAAATGTACTCCTTAAAA+AGG | 0.296574 | 6.3:-83673217 | MS.gene75052:CDS |
| CACCAAAAGAAAGAACAAAA+AGG | 0.308755 | 6.3:-83673163 | MS.gene75052:CDS |
| GGAAGCAGAACTTGAAGAAT+TGG | 0.342673 | 6.3:-83672011 | MS.gene75052:CDS |
| TTGCTGGATGTGTCTTGTTT+AGG | 0.352010 | 6.3:+83675663 | None:intergenic |
| CGTGCAGGTTGCCTCCCAGC+TGG | 0.353565 | 6.3:+83671920 | None:intergenic |
| CCCACAGTGCACGTCCCAGC+TGG | 0.353629 | 6.3:-83671935 | MS.gene75052:CDS |
| CTCGTTTAATTTGTCTAAAG+TGG | 0.361888 | 6.3:+83675632 | None:intergenic |
| TAAAGTGGCAAGAGCATTGC+TGG | 0.395234 | 6.3:+83675647 | None:intergenic |
| GGAGTCGGCTTTGCAGGAAC+AGG | 0.397015 | 6.3:+83671896 | None:intergenic |
| GACTCCTGAGGAAGATGAAT+TGG | 0.412289 | 6.3:-83671879 | MS.gene75052:CDS |
| GGAGCAGGAGCTGTAGTTGC+TGG | 0.442696 | 6.3:+83671956 | None:intergenic |
| CCAGTTGCGTATTCATGACC+AGG | 0.454482 | 6.3:-83672996 | MS.gene75052:intron |
| TTGTTCTTTACAGGACGAAC+TGG | 0.460844 | 6.3:-83672032 | MS.gene75052:intron |
| GCAGATTCAAGAAGCATTGT+CGG | 0.464581 | 6.3:-83672564 | MS.gene75052:CDS |
| AGAATTGGAGAGTGCTGAGT+TGG | 0.466125 | 6.3:-83671996 | MS.gene75052:CDS |
| ACGGTAGATGCGTTAAGAAC+AGG | 0.469044 | 6.3:-83672847 | MS.gene75052:CDS |
| AAATCAGCAGCAGCACCAAT+TGG | 0.472619 | 6.3:+83672539 | None:intergenic |
| TTCAATGTTTGAAGAGGAAG+AGG | 0.475427 | 6.3:-83673054 | MS.gene75052:CDS |
| CCAGCTGGGACGTGCACTGT+GGG | 0.476274 | 6.3:+83671935 | None:intergenic |
| TGCTAAAGCCACCACGGAAA+CGG | 0.478535 | 6.3:-83672866 | MS.gene75052:CDS |
| GGGACGTGCACTGTGGGAGC+AGG | 0.480823 | 6.3:+83671941 | None:intergenic |
| CCTGGTCATGAATACGCAAC+TGG | 0.481018 | 6.3:+83672996 | None:intergenic |
| GAAGCATTGTCGGCTCCAAT+TGG | 0.484568 | 6.3:-83672554 | MS.gene75052:CDS |
| CGCATCTACCGTTTCCGTGG+TGG | 0.487516 | 6.3:+83672858 | None:intergenic |
| GGCAGCTTTGCAGGCTGAGA+TGG | 0.492052 | 6.3:-83671858 | MS.gene75052:CDS |
| TTTGCAGGAACAGGGCGTGC+AGG | 0.497715 | 6.3:+83671905 | None:intergenic |
| GTGCAGGTTGCCTCCCAGCT+GGG | 0.526011 | 6.3:+83671921 | None:intergenic |
| GCTGCCAATTCATCTTCCTC+AGG | 0.526016 | 6.3:+83671875 | None:intergenic |
| CTGCAATTCAATGTTTGAAG+AGG | 0.528685 | 6.3:-83673060 | MS.gene75052:CDS |
| CTGCTCATTTATCTCGTCCA+TGG | 0.531919 | 6.3:+83672601 | None:intergenic |
| TAATAGATGATAATGTTAGA+AGG | 0.546431 | 6.3:-83672889 | MS.gene75052:intron |
| AATTCATCTTCCTCAGGAGT+CGG | 0.548839 | 6.3:+83671881 | None:intergenic |
| CCACAGTGCACGTCCCAGCT+GGG | 0.553286 | 6.3:-83671934 | MS.gene75052:CDS |
| AACAGGAGCAGCTACTATGA+AGG | 0.577122 | 6.3:-83672830 | MS.gene75052:CDS |
| TAACGCATCTACCGTTTCCG+TGG | 0.584559 | 6.3:+83672855 | None:intergenic |
| CCCAGCTGGGACGTGCACTG+TGG | 0.592771 | 6.3:+83671934 | None:intergenic |
| GAACAACAAGTTGAGCAGCT+TGG | 0.596454 | 6.3:-83673025 | MS.gene75052:CDS |
| GAGTCGGCTTTGCAGGAACA+GGG | 0.596697 | 6.3:+83671897 | None:intergenic |
| TCCTGCAAAGCCGACTCCTG+AGG | 0.597589 | 6.3:-83671891 | MS.gene75052:CDS |
| TGATGACGTCGACAAGACCA+TGG | 0.612646 | 6.3:-83672618 | MS.gene75052:CDS |
| CACTTTAGACAAATTAAACG+AGG | 0.618854 | 6.3:-83675631 | MS.gene75052:intron |
| CAGTGCACGTCCCAGCTGGG+AGG | 0.680562 | 6.3:-83671931 | MS.gene75052:CDS |
| AGAAGGTGCTAAAGCCACCA+CGG | 0.700426 | 6.3:-83672872 | MS.gene75052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGGAAAATAAAAAAAAAA+AGG | + | chr6.3:83671966-83671985 | None:intergenic | 10.0% |
| !! | AATTAATCATTTGTTTGAAT+TGG | + | chr6.3:83673268-83673287 | None:intergenic | 15.0% |
| !! | ATGATTTATTTAATTGAGTT+TGG | - | chr6.3:83674872-83674891 | MS.gene75052:intron | 15.0% |
| !! | TACAAATTAACAAATTCAAT+CGG | + | chr6.3:83672536-83672555 | None:intergenic | 15.0% |
| !! | TGAATTAAGAAAAAGTTTAA+GGG | + | chr6.3:83674074-83674093 | None:intergenic | 15.0% |
| !! | TTAATTTATACATAAACACT+TGG | + | chr6.3:83673083-83673102 | None:intergenic | 15.0% |
| !!! | TATGAAGATAAAATTTTTGT+TGG | - | chr6.3:83672258-83672277 | MS.gene75052:intron | 15.0% |
| !!! | TCATTTTCTTAAAATATGAT+TGG | + | chr6.3:83675362-83675381 | None:intergenic | 15.0% |
| !!! | TGTTTAAGTTATTTGTATAA+CGG | - | chr6.3:83672897-83672916 | MS.gene75052:intron | 15.0% |
| !! | AACAAAACCTTATATGATAA+AGG | + | chr6.3:83672124-83672143 | None:intergenic | 20.0% |
| !! | ATGAACAATAGATAAGATAA+AGG | + | chr6.3:83672358-83672377 | None:intergenic | 20.0% |
| !! | GAATGCTTATTTATTTATGT+TGG | - | chr6.3:83675039-83675058 | MS.gene75052:intron | 20.0% |
| !! | GACTTATGAATTAACATAAA+AGG | - | chr6.3:83672423-83672442 | MS.gene75052:intron | 20.0% |
| !! | GGAAAATAAAAAAAAAAAGG+TGG | + | chr6.3:83671963-83671982 | None:intergenic | 20.0% |
| !! | GTGAATTAAGAAAAAGTTTA+AGG | + | chr6.3:83674075-83674094 | None:intergenic | 20.0% |
| !! | TATGACATGTTTATCATATA+AGG | - | chr6.3:83673525-83673544 | MS.gene75052:intron | 20.0% |
| !! | TTGATTACGTAAAAAAAATG+AGG | + | chr6.3:83675207-83675226 | None:intergenic | 20.0% |
| !! | TTTCTTAATTCACACAATTA+CGG | - | chr6.3:83674082-83674101 | MS.gene75052:intron | 20.0% |
| !!! | AAGCTTTTATTTGTTATTCA+TGG | - | chr6.3:83672204-83672223 | MS.gene75052:intron | 20.0% |
| !!! | AAGTTGTTTTTATCTAAACA+GGG | + | chr6.3:83672864-83672883 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAACATT+TGG | - | chr6.3:83673851-83673870 | MS.gene75052:intron | 20.0% |
| !!! | AGCTTTTATTTGTTATTCAT+GGG | - | chr6.3:83672205-83672224 | MS.gene75052:intron | 20.0% |
| !!! | CTTTTCACTTAATTTTGTTT+TGG | - | chr6.3:83675252-83675271 | MS.gene75052:intron | 20.0% |
| !!! | GTTTAAGTTATTTGTATAAC+GGG | - | chr6.3:83672898-83672917 | MS.gene75052:intron | 20.0% |
| !!! | TAAGTTGTTTTTATCTAAAC+AGG | + | chr6.3:83672865-83672884 | None:intergenic | 20.0% |
| !!! | TAATAGATGATAATGTTAGA+AGG | - | chr6.3:83674648-83674667 | MS.gene75052:intron | 20.0% |
| !!! | TTATCATATAAGGTTTTGTT+TGG | - | chr6.3:83672124-83672143 | MS.gene75052:intron | 20.0% |
| !!! | TTTAGTATTAGTTTAGACAA+TGG | - | chr6.3:83674580-83674599 | MS.gene75052:intron | 20.0% |
| ! | AAAAATAAGCCAATCAAAAC+AGG | + | chr6.3:83672165-83672184 | None:intergenic | 25.0% |
| ! | AATAAATTCAGAATGCTACA+CGG | + | chr6.3:83675487-83675506 | None:intergenic | 25.0% |
| ! | ACCAAAAGAAAGAACAAAAA+GGG | - | chr6.3:83674375-83674394 | MS.gene75052:intron | 25.0% |
| ! | AGTGTCTGTATAATTTCAAA+GGG | + | chr6.3:83674282-83674301 | None:intergenic | 25.0% |
| ! | ATCAATTTCTGAGCATATAT+TGG | - | chr6.3:83674136-83674155 | MS.gene75052:intron | 25.0% |
| ! | CTGAATTTATTGTTCTTTAC+AGG | - | chr6.3:83675496-83675515 | MS.gene75052:intron | 25.0% |
| ! | GGATAATCCTTTATCATATA+AGG | - | chr6.3:83672114-83672133 | MS.gene75052:intron | 25.0% |
| ! | GTACATAGTTTATGTGTAAA+CGG | + | chr6.3:83673112-83673131 | None:intergenic | 25.0% |
| ! | TAAAGTCAAACTGTTTCATA+AGG | - | chr6.3:83672929-83672948 | MS.gene75052:intron | 25.0% |
| ! | TAACCTATTAAAGAGAACTA+CGG | + | chr6.3:83672733-83672752 | None:intergenic | 25.0% |
| ! | TAGTGTCTGTATAATTTCAA+AGG | + | chr6.3:83674283-83674302 | None:intergenic | 25.0% |
| ! | TCTCTTTAATAGGTTATGTT+TGG | - | chr6.3:83672737-83672756 | MS.gene75052:intron | 25.0% |
| ! | TGTATCTTCATAAACTAACT+TGG | + | chr6.3:83672388-83672407 | None:intergenic | 25.0% |
| ! | TTCAGACAGATTAAGAAAAA+TGG | - | chr6.3:83675177-83675196 | MS.gene75052:intron | 25.0% |
| ! | TTCTAATTTCACTTAATCCA+TGG | - | chr6.3:83674425-83674444 | MS.gene75052:intron | 25.0% |
| ! | TTTCTATAAGCTCTTACAAA+TGG | - | chr6.3:83673016-83673035 | MS.gene75052:CDS | 25.0% |
| !! | AAAGGTAAACTGTTTTCAAA+AGG | - | chr6.3:83672441-83672460 | MS.gene75052:intron | 25.0% |
| !! | AATAGGTTATGTTTGGAATT+TGG | - | chr6.3:83672744-83672763 | MS.gene75052:intron | 25.0% |
| !! | CTCTTGTTATAGAAATAACT+TGG | + | chr6.3:83673572-83673591 | None:intergenic | 25.0% |
| !! | GTTTGATTATTTGTACCTTT+TGG | - | chr6.3:83675075-83675094 | MS.gene75052:intron | 25.0% |
| !!! | ATAAGTTTTGTGATACTGTT+TGG | - | chr6.3:83673481-83673500 | MS.gene75052:intron | 25.0% |
| !!! | ATAATTGGATCTGTTTTTTG+CGG | + | chr6.3:83672602-83672621 | None:intergenic | 25.0% |
| !!! | CAATTACTCCATTTTTTGTT+CGG | - | chr6.3:83672093-83672112 | MS.gene75052:intron | 25.0% |
| !!! | TAAGTTTTGTGATACTGTTT+GGG | - | chr6.3:83673482-83673501 | MS.gene75052:intron | 25.0% |
| !!! | TAATACTTCTAGGATTGTTT+GGG | + | chr6.3:83673220-83673239 | None:intergenic | 25.0% |
| !!! | TAATCTTATTTTGCCTCTTA+TGG | - | chr6.3:83674613-83674632 | MS.gene75052:intron | 25.0% |
| !!! | TATCATATAAGGTACTGTTT+GGG | - | chr6.3:83673536-83673555 | MS.gene75052:intron | 25.0% |
| !!! | TTAATACTTCTAGGATTGTT+TGG | + | chr6.3:83673221-83673240 | None:intergenic | 25.0% |
| !!! | TTATCATATAAGGTACTGTT+TGG | - | chr6.3:83673535-83673554 | MS.gene75052:intron | 25.0% |
| AAAAAGTTTAAGGGCCTATT+TGG | + | chr6.3:83674065-83674084 | None:intergenic | 30.0% | |
| AAGCTATCATAGAAAGCTTA+TGG | - | chr6.3:83673827-83673846 | MS.gene75052:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr6.3:83673957-83673976 | MS.gene75052:intron | 30.0% | |
| ACGAATAGATAAACAGTTCA+AGG | + | chr6.3:83674199-83674218 | None:intergenic | 30.0% | |
| AGGATTATCCGAACAAAAAA+TGG | + | chr6.3:83672104-83672123 | None:intergenic | 30.0% | |
| ATAGAAACAGGAATTAGAGT+TGG | + | chr6.3:83673329-83673348 | None:intergenic | 30.0% | |
| ATCATGTAGAGTTTATGGAA+AGG | - | chr6.3:83672465-83672484 | MS.gene75052:intron | 30.0% | |
| ATCTACAAAACACAAATGCA+TGG | - | chr6.3:83675333-83675352 | MS.gene75052:intron | 30.0% | |
| CACCAAAAGAAAGAACAAAA+AGG | - | chr6.3:83674374-83674393 | MS.gene75052:intron | 30.0% | |
| CACTTTAGACAAATTAAACG+AGG | - | chr6.3:83671906-83671925 | MS.gene75052:CDS | 30.0% | |
| CATAGGTGAAATATAGAAAC+AGG | + | chr6.3:83673341-83673360 | None:intergenic | 30.0% | |
| CTACTCTGGACTTAAAATAT+AGG | + | chr6.3:83675308-83675327 | None:intergenic | 30.0% | |
| CTACTGCAATTAATACTTCT+AGG | + | chr6.3:83673230-83673249 | None:intergenic | 30.0% | |
| GGAAAATGTACTCCTTAAAA+AGG | - | chr6.3:83674320-83674339 | MS.gene75052:intron | 30.0% | |
| TCAAACAAGACAATCCAAAT+AGG | - | chr6.3:83674048-83674067 | MS.gene75052:intron | 30.0% | |
| TCCAATTATTGCAATCCATT+CGG | - | chr6.3:83672613-83672632 | MS.gene75052:CDS | 30.0% | |
| TCTCTCAAATAGGTTCTATT+TGG | - | chr6.3:83673430-83673449 | MS.gene75052:intron | 30.0% | |
| TTAGACGATAAGCTCAAATA+AGG | - | chr6.3:83673044-83673063 | MS.gene75052:CDS | 30.0% | |
| TTGAATGTAACCACATGTAT+CGG | - | chr6.3:83675387-83675406 | MS.gene75052:intron | 30.0% | |
| TTGTTTGGATAAACAGCTAA+GGG | - | chr6.3:83672139-83672158 | MS.gene75052:intron | 30.0% | |
| TTTCATAAGCTCAATCCAAA+CGG | - | chr6.3:83672330-83672349 | MS.gene75052:intron | 30.0% | |
| TTTCCGTAGTTCTCTTTAAT+AGG | - | chr6.3:83672727-83672746 | MS.gene75052:intron | 30.0% | |
| TTTGTAGATAAGTACTACTC+TGG | + | chr6.3:83675322-83675341 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACAGCTA+AGG | - | chr6.3:83672138-83672157 | MS.gene75052:intron | 30.0% | |
| ! | AAGGTATCATGTAGAGTTTA+TGG | - | chr6.3:83672460-83672479 | MS.gene75052:intron | 30.0% |
| ! | AATGTGCTGGAAATAGTTTT+TGG | - | chr6.3:83673642-83673661 | MS.gene75052:intron | 30.0% |
| ! | ACCCTTTTTGTTCTTTCTTT+TGG | + | chr6.3:83674379-83674398 | None:intergenic | 30.0% |
| ! | AGATACAATTTTCGTTAGTG+AGG | - | chr6.3:83672401-83672420 | MS.gene75052:intron | 30.0% |
| ! | ATGTGTTCAATCTGAAATGT+TGG | - | chr6.3:83675437-83675456 | MS.gene75052:intron | 30.0% |
| !! | CTCGTTTAATTTGTCTAAAG+TGG | + | chr6.3:83671908-83671927 | None:intergenic | 30.0% |
| !! | CTTTCTTTTGGTGTATTCTT+TGG | + | chr6.3:83674367-83674386 | None:intergenic | 30.0% |
| AAAACTCAAGTCACATTCCA+TGG | + | chr6.3:83674445-83674464 | None:intergenic | 35.0% | |
| AACCTATTTGAGAGAGCTTA+TGG | + | chr6.3:83673425-83673444 | None:intergenic | 35.0% | |
| AATACAAATGCATTCACACC+TGG | + | chr6.3:83674562-83674581 | None:intergenic | 35.0% | |
| ACTAGAAATGCTCGAGAAAA+AGG | - | chr6.3:83674299-83674318 | MS.gene75052:intron | 35.0% | |
| CCAATTATTGCAATCCATTC+GGG | - | chr6.3:83672614-83672633 | MS.gene75052:CDS | 35.0% | |
| CCTCATTTCCATAAGATCTA+CGG | + | chr6.3:83672959-83672978 | None:intergenic | 35.0% | |
| CTGCAATTCAATGTTTGAAG+AGG | - | chr6.3:83674477-83674496 | MS.gene75052:intron | 35.0% | |
| GAGAGCTTATGAGAATAAGT+TGG | - | chr6.3:83673152-83673171 | MS.gene75052:intron | 35.0% | |
| TGCATTTAGCAGTACTCTTA+TGG | - | chr6.3:83672665-83672684 | MS.gene75052:intron | 35.0% | |
| TTCAATGTTTGAAGAGGAAG+AGG | - | chr6.3:83674483-83674502 | MS.gene75052:intron | 35.0% | |
| TTCATAAGCTCAATCCAAAC+GGG | - | chr6.3:83672331-83672350 | MS.gene75052:intron | 35.0% | |
| TTCCATAAGCTCTCTCAAAT+AGG | - | chr6.3:83673420-83673439 | MS.gene75052:intron | 35.0% | |
| TTGAATCTGCTTCATGTTCT+CGG | + | chr6.3:83674963-83674982 | None:intergenic | 35.0% | |
| ! | AAGGTATTCCGTAGATCTTA+TGG | - | chr6.3:83672948-83672967 | MS.gene75052:intron | 35.0% |
| ! | TCTTGTTTGAGCTTATCTAC+TGG | + | chr6.3:83674038-83674057 | None:intergenic | 35.0% |
| !! | TGTTATTCATGGGCTTGTTA+AGG | - | chr6.3:83672215-83672234 | MS.gene75052:intron | 35.0% |
| !! | TTGGTTCTGTTTCTTTCTAC+AGG | - | chr6.3:83674891-83674910 | MS.gene75052:intron | 35.0% |
| !!! | TCTTATTTTGCCTCTTATGG+TGG | - | chr6.3:83674616-83674635 | MS.gene75052:intron | 35.0% |
| AATTCATCTTCCTCAGGAGT+CGG | + | chr6.3:83675659-83675678 | None:intergenic | 40.0% | |
| ACAGATTGAGATTGAGAGAG+TGG | - | chr6.3:83674234-83674253 | MS.gene75052:intron | 40.0% | |
| ACATAAACACTTGACCTGCT+TGG | + | chr6.3:83673738-83673757 | None:intergenic | 40.0% | |
| ACATAAACACTTGGCCTGTT+TGG | + | chr6.3:83673074-83673093 | None:intergenic | 40.0% | |
| AGACTGTTTGCAAGAGCTTA+TGG | + | chr6.3:83673686-83673705 | None:intergenic | 40.0% | |
| AGTGCTGTACAATACTCTCT+CGG | - | chr6.3:83675106-83675125 | MS.gene75052:intron | 40.0% | |
| ATGCTATCGAAGAGAGCTTA+TGG | - | chr6.3:83673933-83673952 | MS.gene75052:intron | 40.0% | |
| CACATTTCCATAAGCTCTCT+GGG | + | chr6.3:83673628-83673647 | None:intergenic | 40.0% | |
| CAGCACTATACACAACCAAA+AGG | + | chr6.3:83675093-83675112 | None:intergenic | 40.0% | |
| CATTGACAATCACAGCTCAT+AGG | + | chr6.3:83673358-83673377 | None:intergenic | 40.0% | |
| CCGTAGATCTTATGGAAATG+AGG | - | chr6.3:83672956-83672975 | MS.gene75052:intron | 40.0% | |
| GAGCTTATGGAAACAGCTTA+TGG | + | chr6.3:83673412-83673431 | None:intergenic | 40.0% | |
| GCGCAATTGCAAATAGTTGA+GGG | - | chr6.3:83672978-83672997 | MS.gene75052:intron | 40.0% | |
| GGAAGCAGAACTTGAAGAAT+TGG | - | chr6.3:83675526-83675545 | MS.gene75052:intron | 40.0% | |
| TCAAATAAGGCGATCCAAAC+AGG | - | chr6.3:83673057-83673076 | MS.gene75052:CDS | 40.0% | |
| TCAATGAAGTCAATCCAAGC+AGG | - | chr6.3:83673721-83673740 | MS.gene75052:intron | 40.0% | |
| TCATAAGCTCAATCCAAACG+GGG | - | chr6.3:83672332-83672351 | MS.gene75052:intron | 40.0% | |
| TGCGGAAATCATGTGTGATT+GGG | + | chr6.3:83672584-83672603 | None:intergenic | 40.0% | |
| TGCTATCGAAGAGAGCTTAT+GGG | - | chr6.3:83673934-83673953 | MS.gene75052:intron | 40.0% | |
| TTGCGGAAATCATGTGTGAT+TGG | + | chr6.3:83672585-83672604 | None:intergenic | 40.0% | |
| TTGTTCTTTACAGGACGAAC+TGG | - | chr6.3:83675505-83675524 | MS.gene75052:intron | 40.0% | |
| ! | TATTTTGCCTCTTATGGTGG+TGG | - | chr6.3:83674619-83674638 | MS.gene75052:intron | 40.0% |
| !! | CCCGAATGGATTGCAATAAT+TGG | + | chr6.3:83672617-83672636 | None:intergenic | 40.0% |
| !! | CTGAAATGTTGGTGCTACAT+TGG | - | chr6.3:83675448-83675467 | MS.gene75052:intron | 40.0% |
| !! | GCAGATTCAAGAAGCATTGT+CGG | - | chr6.3:83674973-83674992 | MS.gene75052:intron | 40.0% |
| !! | TTGCTGGATGTGTCTTGTTT+AGG | + | chr6.3:83671877-83671896 | None:intergenic | 40.0% |
| AAATCAGCAGCAGCACCAAT+TGG | + | chr6.3:83675001-83675020 | None:intergenic | 45.0% | |
| AACAGGAGCAGCTACTATGA+AGG | - | chr6.3:83674707-83674726 | MS.gene75052:intron | 45.0% | |
| AAGCTATCCCAGAGAGCTTA+TGG | - | chr6.3:83673618-83673637 | MS.gene75052:intron | 45.0% | |
| AATCGGTCGTGATACATTCG+CGG | + | chr6.3:83672519-83672538 | None:intergenic | 45.0% | |
| ACACAAACCACCACCATAAG+AGG | + | chr6.3:83674629-83674648 | None:intergenic | 45.0% | |
| ACGGTAGATGCGTTAAGAAC+AGG | - | chr6.3:83674690-83674709 | MS.gene75052:intron | 45.0% | |
| AGATGAATTGGCAGCTTTGC+AGG | - | chr6.3:83675670-83675689 | MS.gene75052:CDS | 45.0% | |
| CTGCTCATTTATCTCGTCCA+TGG | + | chr6.3:83674939-83674958 | None:intergenic | 45.0% | |
| GACTCCTGAGGAAGATGAAT+TGG | - | chr6.3:83675658-83675677 | MS.gene75052:CDS | 45.0% | |
| GAGAGCTTATGGAAATGTGC+TGG | - | chr6.3:83673629-83673648 | MS.gene75052:intron | 45.0% | |
| GATAAGATAAAGGCCCCGTT+TGG | + | chr6.3:83672348-83672367 | None:intergenic | 45.0% | |
| GCACATTTCCATAAGCTCTC+TGG | + | chr6.3:83673629-83673648 | None:intergenic | 45.0% | |
| GGCGCAATTGCAAATAGTTG+AGG | - | chr6.3:83672977-83672996 | MS.gene75052:intron | 45.0% | |
| GTGCTGTACAATACTCTCTC+GGG | - | chr6.3:83675107-83675126 | MS.gene75052:intron | 45.0% | |
| ! | GAACAACAAGTTGAGCAGCT+TGG | - | chr6.3:83674512-83674531 | MS.gene75052:intron | 45.0% |
| !! | AGAATTGGAGAGTGCTGAGT+TGG | - | chr6.3:83675541-83675560 | MS.gene75052:intron | 45.0% |
| !! | CAATACAGTGCCGATACATG+TGG | + | chr6.3:83675400-83675419 | None:intergenic | 45.0% |
| !! | TAAAGTGGCAAGAGCATTGC+TGG | + | chr6.3:83671893-83671912 | None:intergenic | 45.0% |
| !!! | AGCTAAGGGCCTGTTTTGAT+TGG | - | chr6.3:83672153-83672172 | MS.gene75052:intron | 45.0% |
| !!! | GGCTTTTTCAACTTCTGCTG+CGG | + | chr6.3:83674346-83674365 | None:intergenic | 45.0% |
| !! | ATAAAAAAACTAAAAATTAA+TGG | + | chr6.3:83671984-83672003 | None:intergenic | 5.0% |
| AAGCACTCGTGAGGCTGTTT+GGG | + | chr6.3:83674012-83674031 | None:intergenic | 50.0% | |
| ACTGTATTGCGTGTCGGACT+CGG | - | chr6.3:83675411-83675430 | MS.gene75052:intron | 50.0% | |
| ATCGGCACTGTATTGCGTGT+CGG | - | chr6.3:83675405-83675424 | MS.gene75052:intron | 50.0% | |
| CCAGTTGCGTATTCATGACC+AGG | - | chr6.3:83674541-83674560 | MS.gene75052:intron | 50.0% | |
| CCTGGTCATGAATACGCAAC+TGG | + | chr6.3:83674544-83674563 | None:intergenic | 50.0% | |
| GATCACGAAGTTGTCCCGAA+TGG | + | chr6.3:83672631-83672650 | None:intergenic | 50.0% | |
| GCTGCCAATTCATCTTCCTC+AGG | + | chr6.3:83675665-83675684 | None:intergenic | 50.0% | |
| TAACGCATCTACCGTTTCCG+TGG | + | chr6.3:83674685-83674704 | None:intergenic | 50.0% | |
| TAAGCACTCGTGAGGCTGTT+TGG | + | chr6.3:83674013-83674032 | None:intergenic | 50.0% | |
| TACTGGCATAAGCACTCGTG+AGG | + | chr6.3:83674021-83674040 | None:intergenic | 50.0% | |
| TGCTAAAGCCACCACGGAAA+CGG | - | chr6.3:83674671-83674690 | MS.gene75052:intron | 50.0% | |
| ! | CTTCTGCTGCGGCCTTTTTA+AGG | + | chr6.3:83674335-83674354 | None:intergenic | 50.0% |
| ! | TGATGACGTCGACAAGACCA+TGG | - | chr6.3:83674919-83674938 | MS.gene75052:intron | 50.0% |
| !! | AGAAGGTGCTAAAGCCACCA+CGG | - | chr6.3:83674665-83674684 | MS.gene75052:intron | 50.0% |
| !! | GAAGCATTGTCGGCTCCAAT+TGG | - | chr6.3:83674983-83675002 | MS.gene75052:intron | 50.0% |
| !!! | TGCTGCTGCTGATTTTGACG+AGG | - | chr6.3:83675006-83675025 | MS.gene75052:intron | 50.0% |
| ! | GAGTCGGCTTTGCAGGAACA+GGG | + | chr6.3:83675643-83675662 | None:intergenic | 55.0% |
| CGCATCTACCGTTTCCGTGG+TGG | + | chr6.3:83674682-83674701 | None:intergenic | 60.0% | |
| GGAGCAGGAGCTGTAGTTGC+TGG | + | chr6.3:83675584-83675603 | None:intergenic | 60.0% | |
| GGCAGCTTTGCAGGCTGAGA+TGG | - | chr6.3:83675679-83675698 | MS.gene75052:CDS | 60.0% | |
| TTTGCAGGAACAGGGCGTGC+AGG | + | chr6.3:83675635-83675654 | None:intergenic | 60.0% | |
| ! | GGAGTCGGCTTTGCAGGAAC+AGG | + | chr6.3:83675644-83675663 | None:intergenic | 60.0% |
| ! | TCCTCAGGAGTCGGCTTTGC+AGG | + | chr6.3:83675650-83675669 | None:intergenic | 60.0% |
| ! | TCCTGCAAAGCCGACTCCTG+AGG | - | chr6.3:83675646-83675665 | MS.gene75052:CDS | 60.0% |
| CCACAGTGCACGTCCCAGCT+GGG | - | chr6.3:83675603-83675622 | MS.gene75052:intron | 65.0% | |
| CCAGCTGGGACGTGCACTGT+GGG | + | chr6.3:83675605-83675624 | None:intergenic | 65.0% | |
| GTGCAGGTTGCCTCCCAGCT+GGG | + | chr6.3:83675619-83675638 | None:intergenic | 65.0% | |
| CAGTGCACGTCCCAGCTGGG+AGG | - | chr6.3:83675606-83675625 | MS.gene75052:intron | 70.0% | |
| CCCACAGTGCACGTCCCAGC+TGG | - | chr6.3:83675602-83675621 | MS.gene75052:intron | 70.0% | |
| CCCAGCTGGGACGTGCACTG+TGG | + | chr6.3:83675606-83675625 | None:intergenic | 70.0% | |
| CGTGCAGGTTGCCTCCCAGC+TGG | + | chr6.3:83675620-83675639 | None:intergenic | 70.0% | |
| GGGACGTGCACTGTGGGAGC+AGG | + | chr6.3:83675599-83675618 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 83671850 | 83675709 | 83671850 | ID=MS.gene75052 |
| chr6.3 | mRNA | 83671850 | 83675709 | 83671850 | ID=MS.gene75052.t1;Parent=MS.gene75052 |
| chr6.3 | exon | 83675632 | 83675709 | 83675632 | ID=MS.gene75052.t1.exon1;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83675632 | 83675709 | 83675632 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| chr6.3 | exon | 83673163 | 83673262 | 83673163 | ID=MS.gene75052.t1.exon2;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83673163 | 83673262 | 83673163 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| chr6.3 | exon | 83672997 | 83673082 | 83672997 | ID=MS.gene75052.t1.exon3;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83672997 | 83673082 | 83672997 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| chr6.3 | exon | 83672814 | 83672905 | 83672814 | ID=MS.gene75052.t1.exon4;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83672814 | 83672905 | 83672814 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| chr6.3 | exon | 83672532 | 83672646 | 83672532 | ID=MS.gene75052.t1.exon5;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83672532 | 83672646 | 83672532 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| chr6.3 | exon | 83671850 | 83672041 | 83671850 | ID=MS.gene75052.t1.exon6;Parent=MS.gene75052.t1 |
| chr6.3 | CDS | 83671850 | 83672041 | 83671850 | ID=cds.MS.gene75052.t1;Parent=MS.gene75052.t1 |
| Gene Sequence |
| Protein sequence |
