Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40918.t1 | XP_003602656.1 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.50E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40918.t1 | Q8GXN6 | 63.6 | 220 | 76 | 2 | 1 | 217 | 1 | 219 | 1.0e-63 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40918.t1 | G7JC58 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.0e-93 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40918 | 0.818364 | 2.04E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene40918 | 0.828437 | 8.99E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene40918 | 0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene40918 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene050439 | MS.gene40918 | 0.800331 | 1.52E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene40918 | 0.828658 | 7.95E-55 | -1.69E-46 |
| MS.gene051655 | MS.gene40918 | 0.824451 | 8.01E-54 | -1.69E-46 |
| MS.gene051676 | MS.gene40918 | 0.80537 | 1.38E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene40918 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene40918 | 0.874043 | 9.19E-68 | -1.69E-46 |
| MS.gene052052 | MS.gene40918 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene40918 | 0.869819 | 2.33E-66 | -1.69E-46 |
| MS.gene052889 | MS.gene40918 | 0.809835 | 1.55E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene40918 | 0.824043 | 1.00E-53 | -1.69E-46 |
| MS.gene053381 | MS.gene40918 | 0.821406 | 4.11E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene40918 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene40918 | 0.848133 | 7.44E-60 | -1.69E-46 |
| MS.gene05517 | MS.gene40918 | 0.824808 | 6.60E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene40918 | 0.837781 | 4.25E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene40918 | 0.84023 | 9.85E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene40918 | 0.81037 | 1.19E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene40918 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene40918 | 0.84176 | 3.91E-58 | -1.69E-46 |
| MS.gene055864 | MS.gene40918 | 0.821509 | 3.89E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene40918 | 0.815995 | 6.95E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene40918 | 0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene40918 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene056638 | MS.gene40918 | 0.82915 | 6.05E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene40918 | 0.827195 | 1.79E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene40918 | 0.812961 | 3.26E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene40918 | 0.886726 | 2.66E-72 | -1.69E-46 |
| MS.gene057102 | MS.gene40918 | 0.83267 | 8.28E-56 | -1.69E-46 |
| MS.gene057360 | MS.gene40918 | 0.833603 | 4.85E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene40918 | 0.833509 | 5.12E-56 | -1.69E-46 |
| MS.gene058081 | MS.gene40918 | 0.803336 | 3.66E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene40918 | 0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene059144 | MS.gene40918 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene40918 | 0.807981 | 3.88E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene40918 | 0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene059360 | MS.gene40918 | 0.83505 | 2.10E-56 | -1.69E-46 |
| MS.gene059774 | MS.gene40918 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene40918 | -0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene40918 | 0.827377 | 1.62E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene40918 | 0.854218 | 1.43E-61 | -1.69E-46 |
| MS.gene060191 | MS.gene40918 | 0.800037 | 1.74E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene40918 | 0.805503 | 1.29E-49 | -1.69E-46 |
| MS.gene060702 | MS.gene40918 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene40918 | 0.815438 | 9.25E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene40918 | 0.816886 | 4.39E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene40918 | 0.819308 | 1.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40918 | MS.gene013289 | PPI |
| MS.gene40918 | MS.gene064025 | PPI |
| MS.gene40918 | MS.gene75052 | PPI |
| MS.gene40918 | MS.gene66354 | PPI |
| MS.gene40918 | MS.gene06372 | PPI |
| MS.gene40918 | MS.gene049254 | PPI |
| MS.gene40918 | MS.gene030307 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40918.t1 | MTR_3g096680 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.97e-150 | 417 |
| MS.gene40918.t1 | MTR_3g096680 | 90.000 | 240 | 1 | 1 | 1 | 217 | 1 | 240 | 3.43e-145 | 404 |
| MS.gene40918.t1 | MTR_3g096680 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 5.93e-91 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40918.t1 | AT5G09260 | 78.082 | 219 | 43 | 3 | 1 | 217 | 1 | 216 | 3.26e-115 | 327 |
| MS.gene40918.t1 | AT5G63880 | 73.636 | 220 | 54 | 2 | 1 | 217 | 1 | 219 | 2.75e-110 | 315 |
| MS.gene40918.t1 | AT5G63880 | 66.393 | 244 | 54 | 3 | 1 | 217 | 1 | 243 | 1.42e-104 | 301 |
Find 37 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATGAAGAGGAGATTT+TGG | 0.201044 | 3.2:-80671004 | MS.gene40918:CDS |
| GGCTGTCTTTGAAAGTTTAA+AGG | 0.219717 | 3.2:-80671394 | MS.gene40918:CDS |
| ACTGAGCAAGTTTGCGTCTC+TGG | 0.262924 | 3.2:+80672659 | None:intergenic |
| AATGTTTATCTCACTTTGTA+TGG | 0.301517 | 3.2:+80671350 | None:intergenic |
| TGAAGATGTTCAGAAACTTA+TGG | 0.330454 | 3.2:-80671328 | MS.gene40918:CDS |
| GGAACTGTGCTAGGAGCTTC+AGG | 0.332559 | 3.2:+80669482 | None:intergenic |
| TTTGGCAGAGTTTGAGAACT+TGG | 0.390056 | 3.2:-80670986 | MS.gene40918:CDS |
| GAAGAAAGATAGGGCCTTGT+TGG | 0.403435 | 3.2:-80671876 | MS.gene40918:CDS |
| AAGGAAATTAATGCAATACT+TGG | 0.407288 | 3.2:-80671042 | MS.gene40918:CDS |
| CGATCTACGTCCGTTACCTT+AGG | 0.414802 | 3.2:+80672703 | None:intergenic |
| GCATCACTCGTAGTGGTAAC+TGG | 0.415859 | 3.2:+80669410 | None:intergenic |
| AGGAAATTAATGCAATACTT+GGG | 0.470100 | 3.2:-80671041 | MS.gene40918:CDS |
| TTGCTCAACATTTATAAGCC+AGG | 0.478759 | 3.2:+80671805 | None:intergenic |
| CTGAGCAAGTTTGCGTCTCT+GGG | 0.482606 | 3.2:+80672660 | None:intergenic |
| GTCTTTGAAAGTTTAAAGGC+TGG | 0.504167 | 3.2:-80671390 | MS.gene40918:CDS |
| AACAGTTATGGAGGAACCAT+TGG | 0.511723 | 3.2:-80669267 | MS.gene40918:intron |
| CGTAGTGGTAACTGGTGCCT+TGG | 0.515200 | 3.2:+80669418 | None:intergenic |
| TTCGTGAAAAGAAGAAAGAT+AGG | 0.520278 | 3.2:-80671886 | MS.gene40918:CDS |
| TGACAAGGTTGACGAAAAGT+TGG | 0.521454 | 3.2:-80669459 | MS.gene40918:CDS |
| ACTTGCTCAGTATCAACAAA+AGG | 0.527227 | 3.2:-80672647 | MS.gene40918:intron |
| ATTATCAGCAGAAGATGAAG+AGG | 0.529769 | 3.2:-80671013 | MS.gene40918:CDS |
| GTGGTAACTGGTGCCTTGGT+TGG | 0.551235 | 3.2:+80669422 | None:intergenic |
| AATGTTCTTCAAGCTGCCAA+TGG | 0.568542 | 3.2:+80669251 | None:intergenic |
| TATTGAAGCAAGTTGACACC+TGG | 0.572175 | 3.2:-80671823 | MS.gene40918:CDS |
| ACCTTGTCAGGAACTGTGCT+AGG | 0.576734 | 3.2:+80669473 | None:intergenic |
| GGAAATTAATGCAATACTTG+GGG | 0.576994 | 3.2:-80671040 | MS.gene40918:CDS |
| TATATTCGTGAAGAAACCTA+AGG | 0.587486 | 3.2:-80672719 | MS.gene40918:CDS |
| TCGTGAAAAGAAGAAAGATA+GGG | 0.592708 | 3.2:-80671885 | MS.gene40918:CDS |
| TTTCTTCTTTAACGCCAACA+AGG | 0.596260 | 3.2:+80671862 | None:intergenic |
| TGAACTGACAAGCAAGCAGA+AGG | 0.603490 | 3.2:-80671415 | MS.gene40918:CDS |
| TCCTAGCACAGTTCCTGACA+AGG | 0.608316 | 3.2:-80669474 | MS.gene40918:CDS |
| GTTTGAGAACTTGGAAACCC+AGG | 0.622553 | 3.2:-80670977 | MS.gene40918:intron |
| CGTGAAGAAACCTAAGGTAA+CGG | 0.639718 | 3.2:-80672713 | MS.gene40918:CDS |
| TACTTCAGCATCACTCGTAG+TGG | 0.642788 | 3.2:+80669403 | None:intergenic |
| CCTTCTTGATGTTCCAACCA+AGG | 0.644842 | 3.2:-80669435 | MS.gene40918:CDS |
| CCTTGGTTGGAACATCAAGA+AGG | 0.649857 | 3.2:+80669435 | None:intergenic |
| TGATGTTGCAACAGTTATGG+AGG | 0.695628 | 3.2:-80669276 | MS.gene40918:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTTATTTTCTT+TGG | + | chr3.2:80672666-80672685 | None:intergenic | 10.0% |
| !!! | TTATTTTGAAATTTTTCAAT+CGG | + | chr3.2:80671611-80671630 | None:intergenic | 10.0% |
| !! | AAATTAGGAATATGATATAA+AGG | - | chr3.2:80672383-80672402 | MS.gene40918:intron | 15.0% |
| !! | ATTTATATTCATGTTAAAAG+AGG | + | chr3.2:80670496-80670515 | None:intergenic | 15.0% |
| !! | TTTATATTCATGTTAAAAGA+GGG | + | chr3.2:80670495-80670514 | None:intergenic | 15.0% |
| !! | TTTCTGATAATTACTTATTA+GGG | - | chr3.2:80669424-80669443 | MS.gene40918:CDS | 15.0% |
| !!! | ACATTTTGTTACTAAATAAA+TGG | + | chr3.2:80669754-80669773 | None:intergenic | 15.0% |
| !!! | CTATTTTTACAATTTTCAAT+CGG | + | chr3.2:80671555-80671574 | None:intergenic | 15.0% |
| !!! | TTTTCTGATAATTACTTATT+AGG | - | chr3.2:80669423-80669442 | MS.gene40918:CDS | 15.0% |
| !! | AAACATTGAATTCAATTGTT+TGG | - | chr3.2:80672300-80672319 | MS.gene40918:intron | 20.0% |
| !! | AACCTTTAGATTAAAATAGA+TGG | - | chr3.2:80671291-80671310 | MS.gene40918:intron | 20.0% |
| !! | AATAACAGATATGAAATTGA+GGG | + | chr3.2:80669380-80669399 | None:intergenic | 20.0% |
| !! | ATGGACTTATATGTATAAAT+AGG | - | chr3.2:80669560-80669579 | MS.gene40918:intron | 20.0% |
| !! | GAGGTTATAAATTCAAAATT+AGG | - | chr3.2:80672368-80672387 | MS.gene40918:intron | 20.0% |
| !! | TAAAATCAATTCAACACTAA+CGG | - | chr3.2:80671639-80671658 | MS.gene40918:intron | 20.0% |
| !! | TAACAATGAAAATAAAGATC+TGG | + | chr3.2:80671443-80671462 | None:intergenic | 20.0% |
| !! | TAACATTAAAACAAGATGAA+GGG | - | chr3.2:80671524-80671543 | MS.gene40918:intron | 20.0% |
| !! | TCAAGAACTGTAATAAATAT+CGG | - | chr3.2:80669674-80669693 | MS.gene40918:intron | 20.0% |
| !! | TTCAAATTTGTGATTTCAAT+CGG | + | chr3.2:80671669-80671688 | None:intergenic | 20.0% |
| !! | TTTAATCATAGTATATGGAA+AGG | - | chr3.2:80671109-80671128 | MS.gene40918:intron | 20.0% |
| !!! | AAAAGTCTACTTATTTGTTT+TGG | - | chr3.2:80670251-80670270 | MS.gene40918:intron | 20.0% |
| !!! | GAAGTATCTATAAAAAGAAA+AGG | - | chr3.2:80672600-80672619 | MS.gene40918:intron | 20.0% |
| !!! | GATACTTACATTTATTTTGT+TGG | - | chr3.2:80670532-80670551 | MS.gene40918:intron | 20.0% |
| !!! | TAAATGTAAGTATCTCTTTT+AGG | + | chr3.2:80670526-80670545 | None:intergenic | 20.0% |
| !!! | TAATATAGCGTTTTAGATTT+TGG | - | chr3.2:80669950-80669969 | MS.gene40918:intron | 20.0% |
| ! | AACATAAAAAGACGTTGTTT+AGG | - | chr3.2:80671761-80671780 | MS.gene40918:intron | 25.0% |
| ! | AACATTAAAACAAGATGAAG+GGG | - | chr3.2:80671525-80671544 | MS.gene40918:intron | 25.0% |
| ! | AAGGAAATTAATGCAATACT+TGG | - | chr3.2:80670944-80670963 | MS.gene40918:intron | 25.0% |
| ! | AATGTTTATCTCACTTTGTA+TGG | + | chr3.2:80670639-80670658 | None:intergenic | 25.0% |
| ! | ACCATCAGATCAAAAATAAA+CGG | + | chr3.2:80671938-80671957 | None:intergenic | 25.0% |
| ! | AGGAAATTAATGCAATACTT+GGG | - | chr3.2:80670945-80670964 | MS.gene40918:intron | 25.0% |
| ! | ATGACATCTAGCATAAAAAA+TGG | - | chr3.2:80672224-80672243 | MS.gene40918:intron | 25.0% |
| ! | ATTGAATTCAATGTTTCGAT+TGG | + | chr3.2:80672296-80672315 | None:intergenic | 25.0% |
| ! | ATTGTAAAAATAGTGCAACT+AGG | - | chr3.2:80671562-80671581 | MS.gene40918:intron | 25.0% |
| ! | GAATAACAGATATGAAATTG+AGG | + | chr3.2:80669381-80669400 | None:intergenic | 25.0% |
| ! | GTAACATTAAAACAAGATGA+AGG | - | chr3.2:80671523-80671542 | MS.gene40918:intron | 25.0% |
| ! | TGAACAATTGAACTAAAGTT+TGG | - | chr3.2:80669458-80669477 | MS.gene40918:CDS | 25.0% |
| ! | TTAAAATTGTATCTGGTGTA+TGG | - | chr3.2:80669871-80669890 | MS.gene40918:intron | 25.0% |
| !! | AATTTTATTGGGAGTGAAAA+AGG | + | chr3.2:80671352-80671371 | None:intergenic | 25.0% |
| !! | ATTTGAAATTCATTCGAAAC+AGG | - | chr3.2:80671682-80671701 | MS.gene40918:intron | 25.0% |
| !! | TATGAATGGATTTATAAGTC+AGG | + | chr3.2:80671066-80671085 | None:intergenic | 25.0% |
| !! | TTATGTTTGAGATGTGAATT+GGG | + | chr3.2:80671748-80671767 | None:intergenic | 25.0% |
| !! | TTTATGTTTGAGATGTGAAT+TGG | + | chr3.2:80671749-80671768 | None:intergenic | 25.0% |
| !!! | AGCCATCTATTTTAATCTAA+AGG | + | chr3.2:80671296-80671315 | None:intergenic | 25.0% |
| !!! | CACTTTTTTGGTTATTAACT+GGG | - | chr3.2:80669926-80669945 | MS.gene40918:intron | 25.0% |
| !!! | CATGATTTTGCTTAATTTGA+AGG | - | chr3.2:80670925-80670944 | MS.gene40918:intron | 25.0% |
| !!! | TCTACTTATTTGTTTTGGTT+TGG | - | chr3.2:80670256-80670275 | MS.gene40918:intron | 25.0% |
| AAAATGAATTAGCTGGACAT+TGG | - | chr3.2:80669894-80669913 | MS.gene40918:intron | 30.0% | |
| AAAGATCTGGTCATTAACAT+TGG | + | chr3.2:80671430-80671449 | None:intergenic | 30.0% | |
| AACAACAGTAATCAATACAG+TGG | + | chr3.2:80669587-80669606 | None:intergenic | 30.0% | |
| AAGTTCAATGAATCTAGATG+TGG | + | chr3.2:80670769-80670788 | None:intergenic | 30.0% | |
| AGAGAGTGAGTCATTATTAT+TGG | + | chr3.2:80670283-80670302 | None:intergenic | 30.0% | |
| CAAATATATTAACAGCCCAA+CGG | + | chr3.2:80670858-80670877 | None:intergenic | 30.0% | |
| CACTGAGTTAAAATTGTATC+TGG | - | chr3.2:80669864-80669883 | MS.gene40918:intron | 30.0% | |
| CATGCAATAAGAATTTATGG+GGG | + | chr3.2:80672434-80672453 | None:intergenic | 30.0% | |
| CCATGCAATAAGAATTTATG+GGG | + | chr3.2:80672435-80672454 | None:intergenic | 30.0% | |
| GAAAGGAAAAAACTCAAGTA+AGG | + | chr3.2:80670015-80670034 | None:intergenic | 30.0% | |
| GCCATGCAATAAGAATTTAT+GGG | + | chr3.2:80672436-80672455 | None:intergenic | 30.0% | |
| GGAAAATAAAGAACACAGAA+AGG | + | chr3.2:80670032-80670051 | None:intergenic | 30.0% | |
| GGAAATTAATGCAATACTTG+GGG | - | chr3.2:80670946-80670965 | MS.gene40918:intron | 30.0% | |
| TACCTGTTAGTATCTTTCTA+TGG | - | chr3.2:80670302-80670321 | MS.gene40918:intron | 30.0% | |
| TATAGAAGTTGACTAACTGA+TGG | - | chr3.2:80672686-80672705 | MS.gene40918:CDS | 30.0% | |
| TATATTCGTGAAGAAACCTA+AGG | - | chr3.2:80669267-80669286 | MS.gene40918:intron | 30.0% | |
| TCGTGAAAAGAAGAAAGATA+GGG | - | chr3.2:80670101-80670120 | MS.gene40918:intron | 30.0% | |
| TGAAGATGTTCAGAAACTTA+TGG | - | chr3.2:80670658-80670677 | MS.gene40918:intron | 30.0% | |
| TGCCATGCAATAAGAATTTA+TGG | + | chr3.2:80672437-80672456 | None:intergenic | 30.0% | |
| TGTATGGAAAATGAATTAGC+TGG | - | chr3.2:80669887-80669906 | MS.gene40918:intron | 30.0% | |
| TTCGTGAAAAGAAGAAAGAT+AGG | - | chr3.2:80670100-80670119 | MS.gene40918:intron | 30.0% | |
| ! | AATGGAGGTTCTTTATTTGT+GGG | - | chr3.2:80672146-80672165 | MS.gene40918:intron | 30.0% |
| ! | ATTGAGATTTTTGTTCCGTT+GGG | - | chr3.2:80670840-80670859 | MS.gene40918:intron | 30.0% |
| ! | CACTACTTCTCATTTTCATA+TGG | - | chr3.2:80669541-80669560 | MS.gene40918:intron | 30.0% |
| ! | TAACTCAGTGTTGTTAATCT+CGG | + | chr3.2:80669854-80669873 | None:intergenic | 30.0% |
| ! | TAATGGAGGTTCTTTATTTG+TGG | - | chr3.2:80672145-80672164 | MS.gene40918:intron | 30.0% |
| ! | TATGTTTGAGATGTGAATTG+GGG | + | chr3.2:80671747-80671766 | None:intergenic | 30.0% |
| !! | AGAAGGCGTGAAAATTTTAT+TGG | + | chr3.2:80671364-80671383 | None:intergenic | 30.0% |
| !! | CTGGCTTTAATCATAGTATA+TGG | - | chr3.2:80671104-80671123 | MS.gene40918:intron | 30.0% |
| !! | GAAATTGAGGGTATTGAAAA+AGG | + | chr3.2:80669368-80669387 | None:intergenic | 30.0% |
| !! | GAAGGCGTGAAAATTTTATT+GGG | + | chr3.2:80671363-80671382 | None:intergenic | 30.0% |
| !! | TTTATTTTCTTTGGGAGAGA+GGG | + | chr3.2:80672657-80672676 | None:intergenic | 30.0% |
| !!! | GCACTTTTTTGGTTATTAAC+TGG | - | chr3.2:80669925-80669944 | MS.gene40918:intron | 30.0% |
| !!! | TTTTATTTTCTTTGGGAGAG+AGG | + | chr3.2:80672658-80672677 | None:intergenic | 30.0% |
| AAAGCTGCAGAAAATCTGAA+TGG | - | chr3.2:80671852-80671871 | MS.gene40918:CDS | 35.0% | |
| AACATTGCTTAGAGAAGAGA+TGG | + | chr3.2:80672327-80672346 | None:intergenic | 35.0% | |
| AACTGAAAAATCCATGTACC+TGG | + | chr3.2:80671030-80671049 | None:intergenic | 35.0% | |
| AAGCTGCAGAAAATCTGAAT+GGG | - | chr3.2:80671853-80671872 | MS.gene40918:CDS | 35.0% | |
| ACAGCTGGAACAAATATGAA+TGG | + | chr3.2:80671080-80671099 | None:intergenic | 35.0% | |
| ACTCATACCACAAGTAACTT+GGG | + | chr3.2:80672204-80672223 | None:intergenic | 35.0% | |
| ACTGAAAAATCCATGTACCT+GGG | + | chr3.2:80671029-80671048 | None:intergenic | 35.0% | |
| ACTTGCTCAGTATCAACAAA+AGG | - | chr3.2:80669339-80669358 | MS.gene40918:intron | 35.0% | |
| AGCCATAGAAAGATACTAAC+AGG | + | chr3.2:80670307-80670326 | None:intergenic | 35.0% | |
| ATCTCTTCTGAACAGGATAT+CGG | + | chr3.2:80670454-80670473 | None:intergenic | 35.0% | |
| ATTATCAGCAGAAGATGAAG+AGG | - | chr3.2:80670973-80670992 | MS.gene40918:intron | 35.0% | |
| CAATAAGAATTTATGGGGGA+AGG | + | chr3.2:80672430-80672449 | None:intergenic | 35.0% | |
| CCCCATAAATTCTTATTGCA+TGG | - | chr3.2:80672432-80672451 | MS.gene40918:intron | 35.0% | |
| CGTTGGGCTGTTAATATATT+TGG | - | chr3.2:80670856-80670875 | MS.gene40918:intron | 35.0% | |
| CTAAATTTCCTCTATGCTAC+AGG | + | chr3.2:80669706-80669725 | None:intergenic | 35.0% | |
| CTCAATTATCTCTTCTGAAC+AGG | + | chr3.2:80670461-80670480 | None:intergenic | 35.0% | |
| GGCATATCGTAGAACAATAT+AGG | + | chr3.2:80669733-80669752 | None:intergenic | 35.0% | |
| TACCTGTTAGCATCTTTCTA+TGG | - | chr3.2:80670382-80670401 | MS.gene40918:intron | 35.0% | |
| TACTCATACCACAAGTAACT+TGG | + | chr3.2:80672205-80672224 | None:intergenic | 35.0% | |
| TATCAGCCGAGACTAATTAA+TGG | - | chr3.2:80672128-80672147 | MS.gene40918:intron | 35.0% | |
| TGCTAACAGGTAGAGATTAT+CGG | + | chr3.2:80670374-80670393 | None:intergenic | 35.0% | |
| TTGCTCAACATTTATAAGCC+AGG | + | chr3.2:80670184-80670203 | None:intergenic | 35.0% | |
| TTTCTTCTTTAACGCCAACA+AGG | + | chr3.2:80670127-80670146 | None:intergenic | 35.0% | |
| ! | AACTTGAGTGTACCTTTTTG+GGG | - | chr3.2:80670784-80670803 | MS.gene40918:intron | 35.0% |
| ! | AATTCTCATCTACTTGCTGA+TGG | - | chr3.2:80670898-80670917 | MS.gene40918:intron | 35.0% |
| ! | AGAAGATGAAGAGGAGATTT+TGG | - | chr3.2:80670982-80671001 | MS.gene40918:CDS | 35.0% |
| ! | GAACCTCCATTAATTAGTCT+CGG | + | chr3.2:80672137-80672156 | None:intergenic | 35.0% |
| ! | GAACTTGAGTGTACCTTTTT+GGG | - | chr3.2:80670783-80670802 | MS.gene40918:intron | 35.0% |
| ! | GATTGAGATTTTTGTTCCGT+TGG | - | chr3.2:80670839-80670858 | MS.gene40918:intron | 35.0% |
| ! | GGCTGTCTTTGAAAGTTTAA+AGG | - | chr3.2:80670592-80670611 | MS.gene40918:intron | 35.0% |
| ! | GTCTTTGAAAGTTTAAAGGC+TGG | - | chr3.2:80670596-80670615 | MS.gene40918:intron | 35.0% |
| ! | TGAACTTGAGTGTACCTTTT+TGG | - | chr3.2:80670782-80670801 | MS.gene40918:intron | 35.0% |
| ! | TTGATAAGCTTTTGCTTCAG+CGG | + | chr3.2:80670690-80670709 | None:intergenic | 35.0% |
| !!! | GCCGTTTATTTTTGATCTGA+TGG | - | chr3.2:80671934-80671953 | MS.gene40918:CDS | 35.0% |
| !!! | TGGTGATGATTGCACTTTTT+TGG | - | chr3.2:80669914-80669933 | MS.gene40918:intron | 35.0% |
| AACAGTTATGGAGGAACCAT+TGG | - | chr3.2:80672719-80672738 | MS.gene40918:CDS | 40.0% | |
| ACAGGTAGAGATTATCGGAA+AGG | + | chr3.2:80670369-80670388 | None:intergenic | 40.0% | |
| ACTCAATGGCTCAATAGACA+AGG | + | chr3.2:80670420-80670439 | None:intergenic | 40.0% | |
| AGCCATAGAAAGATGCTAAC+AGG | + | chr3.2:80670387-80670406 | None:intergenic | 40.0% | |
| ATAGACTAAGTGAGGCACAT+GGG | - | chr3.2:80671884-80671903 | MS.gene40918:CDS | 40.0% | |
| ATTAAAGCCAGTAGTACAGC+TGG | + | chr3.2:80671095-80671114 | None:intergenic | 40.0% | |
| ATTTGTTCCAGCTGTACTAC+TGG | - | chr3.2:80671085-80671104 | MS.gene40918:intron | 40.0% | |
| CAGGTAGAGATTATCGGAAA+GGG | + | chr3.2:80670368-80670387 | None:intergenic | 40.0% | |
| CGGAAAGGGAAAATACTCAA+TGG | + | chr3.2:80670434-80670453 | None:intergenic | 40.0% | |
| CGTGAAGAAACCTAAGGTAA+CGG | - | chr3.2:80669273-80669292 | MS.gene40918:intron | 40.0% | |
| CTTCAATAACAGCATCAAGC+TGG | + | chr3.2:80670053-80670072 | None:intergenic | 40.0% | |
| GAAAATCTGAATGGGTATGG+TGG | - | chr3.2:80671861-80671880 | MS.gene40918:CDS | 40.0% | |
| GAGCTAGTGATTGACTATAG+AGG | - | chr3.2:80672349-80672368 | MS.gene40918:intron | 40.0% | |
| GATCTGGTCATTAACATTGG+TGG | + | chr3.2:80671427-80671446 | None:intergenic | 40.0% | |
| GCAGAAAATCTGAATGGGTA+TGG | - | chr3.2:80671858-80671877 | MS.gene40918:CDS | 40.0% | |
| TACCACAAGTAACTTGGGTT+CGG | + | chr3.2:80672199-80672218 | None:intergenic | 40.0% | |
| TCTATAGCACTGTAGCATAG+AGG | - | chr3.2:80669798-80669817 | MS.gene40918:intron | 40.0% | |
| TCTATGCTACAGTGCTATAG+AGG | + | chr3.2:80669799-80669818 | None:intergenic | 40.0% | |
| TCTGAACAGGATATCGGAAA+GGG | + | chr3.2:80670448-80670467 | None:intergenic | 40.0% | |
| TGACAAGGTTGACGAAAAGT+TGG | - | chr3.2:80672527-80672546 | MS.gene40918:intron | 40.0% | |
| TGATGTTGCAACAGTTATGG+AGG | - | chr3.2:80672710-80672729 | MS.gene40918:CDS | 40.0% | |
| TTCTGAACAGGATATCGGAA+AGG | + | chr3.2:80670449-80670468 | None:intergenic | 40.0% | |
| TTTCAGAAGCAGCAAGAGTA+AGG | + | chr3.2:80670738-80670757 | None:intergenic | 40.0% | |
| TTTGACGTGCACAATGAGAA+TGG | + | chr3.2:80669403-80669422 | None:intergenic | 40.0% | |
| TTTGGCAGAGTTTGAGAACT+TGG | - | chr3.2:80671000-80671019 | MS.gene40918:CDS | 40.0% | |
| ! | AACTTTTCGTCAACCTTGTC+AGG | + | chr3.2:80672528-80672547 | None:intergenic | 40.0% |
| ! | ACTTGAGTGTACCTTTTTGG+GGG | - | chr3.2:80670785-80670804 | MS.gene40918:intron | 40.0% |
| ! | TATTGAAGCAAGTTGACACC+TGG | - | chr3.2:80670163-80670182 | MS.gene40918:intron | 40.0% |
| !! | GTTAGGCATTGAAGTTGTAC+TGG | - | chr3.2:80670813-80670832 | MS.gene40918:intron | 40.0% |
| !! | TATGGTGGATAGACTAAGTG+AGG | - | chr3.2:80671876-80671895 | MS.gene40918:CDS | 40.0% |
| AACTTGGAAACCCAGGTACA+TGG | - | chr3.2:80671016-80671035 | MS.gene40918:CDS | 45.0% | |
| CAGCCGAGACTAATTAATGG+AGG | - | chr3.2:80672131-80672150 | MS.gene40918:intron | 45.0% | |
| CCTTCTTGATGTTCCAACCA+AGG | - | chr3.2:80672551-80672570 | MS.gene40918:intron | 45.0% | |
| CCTTGGTTGGAACATCAAGA+AGG | + | chr3.2:80672554-80672573 | None:intergenic | 45.0% | |
| CTGGTCATTAACATTGGTGG+TGG | + | chr3.2:80671424-80671443 | None:intergenic | 45.0% | |
| GAATTGGAGGTTGGAGAAGA+AGG | + | chr3.2:80671381-80671400 | None:intergenic | 45.0% | |
| GATAGACTAAGTGAGGCACA+TGG | - | chr3.2:80671883-80671902 | MS.gene40918:CDS | 45.0% | |
| GATCTTCGACTGCAAACTGT+TGG | + | chr3.2:80672482-80672501 | None:intergenic | 45.0% | |
| GGCTGATGTTGCAACAGTTA+TGG | - | chr3.2:80672707-80672726 | MS.gene40918:CDS | 45.0% | |
| GTTTGAGAACTTGGAAACCC+AGG | - | chr3.2:80671009-80671028 | MS.gene40918:CDS | 45.0% | |
| TACTTCAGCATCACTCGTAG+TGG | + | chr3.2:80672586-80672605 | None:intergenic | 45.0% | |
| TGAAAATGGGGGAGTGGAAT+TGG | + | chr3.2:80671397-80671416 | None:intergenic | 45.0% | |
| TGAACTGACAAGCAAGCAGA+AGG | - | chr3.2:80670571-80670590 | MS.gene40918:intron | 45.0% | |
| ! | GAAGAAAGATAGGGCCTTGT+TGG | - | chr3.2:80670110-80670129 | MS.gene40918:intron | 45.0% |
| ! | GTGTCATTCCTCTAGCAACA+AGG | + | chr3.2:80672104-80672123 | None:intergenic | 45.0% |
| !! | CGGAAAGGGAAAGTACTCAA+TGG | + | chr3.2:80670354-80670373 | None:intergenic | 45.0% |
| !! | GTCATTAACATTGGTGGTGG+TGG | + | chr3.2:80671421-80671440 | None:intergenic | 45.0% |
| !! | TGGTGGTGGTGGTTGAAAAT+GGG | + | chr3.2:80671410-80671429 | None:intergenic | 45.0% |
| !! | TTGGTGGTGGTGGTTGAAAA+TGG | + | chr3.2:80671411-80671430 | None:intergenic | 45.0% |
| !! | TTTTCTTTGGGAGAGAGGGA+CGG | + | chr3.2:80672653-80672672 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+AGG | + | chr3.2:80671238-80671219 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTATTTTCTTT+GGG | + | chr3.2:80672665-80672684 | None:intergenic | 5.0% |
| AAATGGGGGAGTGGAATTGG+AGG | + | chr3.2:80671394-80671413 | None:intergenic | 50.0% | |
| ACCTTGTCAGGAACTGTGCT+AGG | + | chr3.2:80672516-80672535 | None:intergenic | 50.0% | |
| ACTGAGCAAGTTTGCGTCTC+TGG | + | chr3.2:80669330-80669349 | None:intergenic | 50.0% | |
| AGCTGCATAATGTGACTGCC+TGG | - | chr3.2:80672259-80672278 | MS.gene40918:intron | 50.0% | |
| CACCGAACCCAAGTTACTTG+TGG | - | chr3.2:80672194-80672213 | MS.gene40918:intron | 50.0% | |
| CGATCTACGTCCGTTACCTT+AGG | + | chr3.2:80669286-80669305 | None:intergenic | 50.0% | |
| CGATTGGCAGCATAACTACC+AGG | + | chr3.2:80672280-80672299 | None:intergenic | 50.0% | |
| CTGAGCAAGTTTGCGTCTCT+GGG | + | chr3.2:80669329-80669348 | None:intergenic | 50.0% | |
| GAGAGACACCTTGTTGCTAG+AGG | - | chr3.2:80672093-80672112 | MS.gene40918:intron | 50.0% | |
| GCATCACTCGTAGTGGTAAC+TGG | + | chr3.2:80672579-80672598 | None:intergenic | 50.0% | |
| TCCTAGCACAGTTCCTGACA+AGG | - | chr3.2:80672512-80672531 | MS.gene40918:intron | 50.0% | |
| ! | TTTCTTTGGGAGAGAGGGAC+GGG | + | chr3.2:80672652-80672671 | None:intergenic | 50.0% |
| !! | AGTGTACCTTTTTGGGGGAC+GGG | - | chr3.2:80670790-80670809 | MS.gene40918:intron | 50.0% |
| !! | GAGTGTACCTTTTTGGGGGA+CGG | - | chr3.2:80670789-80670808 | MS.gene40918:intron | 50.0% |
| !! | GGTGGTGGTGGTTGAAAATG+GGG | + | chr3.2:80671409-80671428 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGTTGAAAATGG+GGG | + | chr3.2:80671408-80671427 | None:intergenic | 50.0% |
| CGTAGTGGTAACTGGTGCCT+TGG | + | chr3.2:80672571-80672590 | None:intergenic | 55.0% | |
| GGAACTGTGCTAGGAGCTTC+AGG | + | chr3.2:80672507-80672526 | None:intergenic | 55.0% | |
| GGCTGTAGCCTGTAGCATAG+AGG | - | chr3.2:80669695-80669714 | MS.gene40918:intron | 55.0% | |
| GGTGGTTGAAAATGGGGGAG+TGG | + | chr3.2:80671403-80671422 | None:intergenic | 55.0% | |
| GTGGTAACTGGTGCCTTGGT+TGG | + | chr3.2:80672567-80672586 | None:intergenic | 55.0% | |
| ! | GTGCTATAGAGGTGCAGCAG+CGG | + | chr3.2:80669788-80669807 | None:intergenic | 55.0% |
| ! | TTCTTTGGGAGAGAGGGACG+GGG | + | chr3.2:80672651-80672670 | None:intergenic | 55.0% |
| !! | GTGTACCTTTTTGGGGGACG+GGG | - | chr3.2:80670791-80670810 | MS.gene40918:intron | 55.0% |
| CCTAACCCCGTCCCCCAAAA+AGG | + | chr3.2:80670799-80670818 | None:intergenic | 60.0% | |
| GGGGGAGTGGAATTGGAGGT+TGG | + | chr3.2:80671390-80671409 | None:intergenic | 60.0% | |
| ! | TATAGAGGTGCAGCAGCGGC+TGG | + | chr3.2:80669784-80669803 | None:intergenic | 60.0% |
| ! | TCTTTGGGAGAGAGGGACGG+GGG | + | chr3.2:80672650-80672669 | None:intergenic | 60.0% |
| !! | CCTTTTTGGGGGACGGGGTT+AGG | - | chr3.2:80670796-80670815 | MS.gene40918:intron | 60.0% |
| ! | GGGGTGGGTTCAGAGGGATG+AGG | + | chr3.2:80672631-80672650 | None:intergenic | 65.0% |
| TGGGAGAGAGGGACGGGGGT+GGG | + | chr3.2:80672646-80672665 | None:intergenic | 70.0% | |
| TTGGGAGAGAGGGACGGGGG+TGG | + | chr3.2:80672647-80672666 | None:intergenic | 70.0% | |
| ! | AGGGACGGGGGTGGGTTCAG+AGG | + | chr3.2:80672638-80672657 | None:intergenic | 70.0% |
| ! | GGGACGGGGGTGGGTTCAGA+GGG | + | chr3.2:80672637-80672656 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80669259 | 80672749 | 80669259 | ID=MS.gene40918 |
| chr3.2 | mRNA | 80669259 | 80672749 | 80669259 | ID=MS.gene40918.t1;Parent=MS.gene40918 |
| chr3.2 | exon | 80672648 | 80672749 | 80672648 | ID=MS.gene40918.t1.exon1;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80672648 | 80672749 | 80672648 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| chr3.2 | exon | 80671802 | 80671954 | 80671802 | ID=MS.gene40918.t1.exon2;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80671802 | 80671954 | 80671802 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| chr3.2 | exon | 80671296 | 80671448 | 80671296 | ID=MS.gene40918.t1.exon3;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80671296 | 80671448 | 80671296 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| chr3.2 | exon | 80670978 | 80671061 | 80670978 | ID=MS.gene40918.t1.exon4;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80670978 | 80671061 | 80670978 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| chr3.2 | exon | 80669387 | 80669522 | 80669387 | ID=MS.gene40918.t1.exon5;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80669387 | 80669522 | 80669387 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| chr3.2 | exon | 80669259 | 80669284 | 80669259 | ID=MS.gene40918.t1.exon6;Parent=MS.gene40918.t1 |
| chr3.2 | CDS | 80669259 | 80669284 | 80669259 | ID=cds.MS.gene40918.t1;Parent=MS.gene40918.t1 |
| Gene Sequence |
| Protein sequence |
