Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064025.t1 | XP_013453212.1 | 99.5 | 191 | 1 | 0 | 1 | 191 | 30 | 220 | 1.70E-61 | 245.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064025.t1 | O82197 | 91.8 | 134 | 10 | 1 | 1 | 134 | 29 | 161 | 4.8e-57 | 222.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064025.t1 | I3SEH2 | 99.5 | 191 | 1 | 0 | 1 | 191 | 30 | 220 | 1.2e-61 | 245.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene064025 | 0.82398 | 1.03E-53 | -1.69E-46 |
MS.gene050221 | MS.gene064025 | 0.819375 | 1.20E-52 | -1.69E-46 |
MS.gene051181 | MS.gene064025 | 0.811481 | 6.85E-51 | -1.69E-46 |
MS.gene052037 | MS.gene064025 | 0.823225 | 1.55E-53 | -1.69E-46 |
MS.gene052333 | MS.gene064025 | 0.806084 | 9.77E-50 | -1.69E-46 |
MS.gene056050 | MS.gene064025 | 0.813801 | 2.13E-51 | -1.69E-46 |
MS.gene059550 | MS.gene064025 | 0.811782 | 5.89E-51 | -1.69E-46 |
MS.gene060011 | MS.gene064025 | 0.831016 | 2.12E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40918 | MS.gene064025 | PPI |
MS.gene064025 | MS.gene06372 | PPI |
MS.gene064025 | MS.gene049254 | PPI |
MS.gene013289 | MS.gene064025 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064025.t1 | MTR_6g090515 | 96.335 | 191 | 7 | 0 | 1 | 191 | 30 | 220 | 1.69e-130 | 365 |
MS.gene064025.t1 | MTR_8g102030 | 85.864 | 191 | 25 | 2 | 1 | 191 | 34 | 222 | 1.34e-93 | 272 |
MS.gene064025.t1 | MTR_8g102020 | 72.775 | 191 | 35 | 2 | 1 | 191 | 32 | 205 | 1.37e-71 | 216 |
MS.gene064025.t1 | MTR_1g090490 | 30.000 | 180 | 107 | 4 | 4 | 165 | 36 | 214 | 3.34e-13 | 65.9 |
MS.gene064025.t1 | MTR_1g090490 | 30.000 | 180 | 107 | 4 | 4 | 165 | 36 | 214 | 3.43e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064025.t1 | AT2G19830 | 83.854 | 192 | 23 | 3 | 1 | 191 | 10 | 194 | 1.71e-97 | 281 |
MS.gene064025.t1 | AT2G19830 | 83.854 | 192 | 23 | 3 | 1 | 191 | 29 | 213 | 3.00e-97 | 281 |
MS.gene064025.t1 | AT4G29160 | 86.667 | 180 | 23 | 1 | 13 | 191 | 13 | 192 | 3.21e-96 | 277 |
MS.gene064025.t1 | AT4G29160 | 86.667 | 180 | 23 | 1 | 13 | 191 | 40 | 219 | 1.03e-95 | 277 |
MS.gene064025.t1 | AT4G29160 | 86.667 | 180 | 23 | 1 | 13 | 191 | 40 | 219 | 1.03e-95 | 277 |
MS.gene064025.t1 | AT5G04850 | 30.935 | 139 | 88 | 1 | 10 | 140 | 35 | 173 | 3.02e-12 | 63.5 |
MS.gene064025.t1 | AT3G10640 | 30.220 | 182 | 101 | 4 | 10 | 165 | 35 | 216 | 1.01e-11 | 62.0 |
MS.gene064025.t1 | AT3G10640 | 30.488 | 164 | 93 | 4 | 33 | 175 | 1 | 164 | 6.22e-11 | 58.9 |
MS.gene064025.t1 | AT5G09260 | 31.250 | 144 | 94 | 2 | 15 | 157 | 41 | 180 | 8.70e-11 | 59.3 |
Find 43 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAGAAATGCTTGAGAAAA+AGG | 0.221659 | 6.1:-79187969 | None:intergenic |
TCCTCAGGAGTCGGCTTTGC+AGG | 0.229972 | 6.1:+79186639 | None:intergenic |
AGATGAATTGGCAGCTTTGC+AGG | 0.277136 | 6.1:-79186616 | MS.gene064025:CDS |
TTGAATCTGCTTCATGTTCT+CGG | 0.295683 | 6.1:+79187340 | None:intergenic |
GGAAAATGTACTCCTTAAAA+AGG | 0.296574 | 6.1:-79187948 | MS.gene064025:CDS |
CACCAAAAGAAAGAACAAAA+AGG | 0.308755 | 6.1:-79187894 | MS.gene064025:CDS |
GGAAGCAGAACTTGAAGAAT+TGG | 0.338385 | 6.1:-79186760 | MS.gene064025:CDS |
CCCACAGTGCATGTCCCAGC+TGG | 0.344057 | 6.1:-79186684 | MS.gene064025:CDS |
CGTGCAGGTTGCCTCCCAGC+TGG | 0.353565 | 6.1:+79186669 | None:intergenic |
GGAGTCGGCTTTGCAGGAAC+AGG | 0.397015 | 6.1:+79186645 | None:intergenic |
GACTCCTGAGGAAGATGAAT+TGG | 0.412289 | 6.1:-79186628 | MS.gene064025:CDS |
TTGTTCTTTACAGGACGAAT+TGG | 0.437007 | 6.1:-79186781 | MS.gene064025:intron |
GGAGCAGGAGCTGTAGTTGC+TGG | 0.442696 | 6.1:+79186705 | None:intergenic |
AAATCAGCAGCTGCACCAAT+TGG | 0.448641 | 6.1:+79187302 | None:intergenic |
TAATAGATGATAATGTTAGA+AGG | 0.453601 | 6.1:-79187594 | MS.gene064025:intron |
CCAGTTGCGTATTCATGACC+AGG | 0.454482 | 6.1:-79187701 | MS.gene064025:intron |
CCAGCTGGGACATGCACTGT+GGG | 0.462898 | 6.1:+79186684 | None:intergenic |
GCAGATTCAAGAAGCATTGT+CGG | 0.464581 | 6.1:-79187327 | MS.gene064025:CDS |
AGAATTGGAGAGTGCTGAGT+TGG | 0.466125 | 6.1:-79186745 | MS.gene064025:CDS |
ACGGTAGATGCGTTAAGAAC+AGG | 0.469044 | 6.1:-79187552 | MS.gene064025:CDS |
TTCAATGTTTGAAGAGGAAG+AGG | 0.475427 | 6.1:-79187759 | MS.gene064025:CDS |
TGCTAAAGCCACCACGGAAA+CGG | 0.478535 | 6.1:-79187571 | MS.gene064025:CDS |
CCTGGTCATGAATACGCAAC+TGG | 0.481018 | 6.1:+79187701 | None:intergenic |
GGGACATGCACTGTGGGAGC+AGG | 0.482842 | 6.1:+79186690 | None:intergenic |
GAAGCATTGTCGGCTCCAAT+TGG | 0.484568 | 6.1:-79187317 | MS.gene064025:CDS |
CGCATCTACCGTTTCCGTGG+TGG | 0.487516 | 6.1:+79187563 | None:intergenic |
GGCAGCTTTGCAGGCTGAGA+TGG | 0.492052 | 6.1:-79186607 | MS.gene064025:CDS |
TTTGCAGGAACAGGGCGTGC+AGG | 0.497715 | 6.1:+79186654 | None:intergenic |
CTGTTCATTTATCTCGTCCA+TGG | 0.501356 | 6.1:+79187364 | None:intergenic |
CCACAGTGCATGTCCCAGCT+GGG | 0.512082 | 6.1:-79186683 | MS.gene064025:CDS |
GCTGCCAATTCATCTTCCTC+AGG | 0.526016 | 6.1:+79186624 | None:intergenic |
AATTCATCTTCCTCAGGAGT+CGG | 0.548839 | 6.1:+79186630 | None:intergenic |
GTGCAGGTTGCCTCCCAGCT+GGG | 0.551247 | 6.1:+79186670 | None:intergenic |
CGGCAATTCAATGTTTGAAG+AGG | 0.561917 | 6.1:-79187765 | MS.gene064025:CDS |
CCCAGCTGGGACATGCACTG+TGG | 0.570484 | 6.1:+79186683 | None:intergenic |
AACAGGAGCAGCTACTATGA+AGG | 0.577122 | 6.1:-79187535 | MS.gene064025:CDS |
TAACGCATCTACCGTTTCCG+TGG | 0.584559 | 6.1:+79187560 | None:intergenic |
GAACAACAAGTTGAGCAGCT+TGG | 0.596454 | 6.1:-79187730 | MS.gene064025:CDS |
GAGTCGGCTTTGCAGGAACA+GGG | 0.596697 | 6.1:+79186646 | None:intergenic |
TCCTGCAAAGCCGACTCCTG+AGG | 0.597589 | 6.1:-79186640 | MS.gene064025:CDS |
CAGTGCATGTCCCAGCTGGG+AGG | 0.671305 | 6.1:-79186680 | MS.gene064025:CDS |
TGATGACGTTGACAAGACCA+TGG | 0.678474 | 6.1:-79187381 | MS.gene064025:CDS |
AGAAGGTGCTAAAGCCACCA+CGG | 0.700426 | 6.1:-79187577 | MS.gene064025:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATGCTTATTTATTTATGT+TGG | - | chr6.1:79187300-79187319 | MS.gene064025:CDS | 15.0% |
!! | ATGATTTATTTAATTGAGTT+TGG | - | chr6.1:79187133-79187152 | MS.gene064025:intron | 15.0% |
!!! | TCATTTTCTTAAAATATGAT+TGG | + | chr6.1:79187634-79187653 | None:intergenic | 15.0% |
!! | TTGATTACGTAAAAAAAATG+AGG | + | chr6.1:79187476-79187495 | None:intergenic | 20.0% |
!!! | CTTTTCACTTAATTTTGTTT+TGG | - | chr6.1:79187524-79187543 | MS.gene064025:CDS | 20.0% |
!!! | TAATAGATGATAATGTTAGA+AGG | - | chr6.1:79186967-79186986 | MS.gene064025:intron | 20.0% |
!!! | TTTAGTATTAGTTTAGACAA+TGG | - | chr6.1:79186899-79186918 | MS.gene064025:intron | 20.0% |
! | AATAAATTCAGAATGCTACA+CGG | + | chr6.1:79187762-79187781 | None:intergenic | 25.0% |
! | ACCAAAAGAAAGAACAAAAA+GGG | - | chr6.1:79186668-79186687 | MS.gene064025:CDS | 25.0% |
! | ATATACAAAACACTAATGCA+TGG | - | chr6.1:79187605-79187624 | MS.gene064025:intron | 25.0% |
! | CTGAATTTATTGTTCTTTAC+AGG | - | chr6.1:79187771-79187790 | MS.gene064025:intron | 25.0% |
! | TTCTAATTTCACTTAATCCA+TGG | - | chr6.1:79186744-79186763 | MS.gene064025:CDS | 25.0% |
! | TTTGTATATAAGTACTACTC+TGG | + | chr6.1:79187594-79187613 | None:intergenic | 25.0% |
!! | GTTTGATTATTTGTACCTTT+TGG | - | chr6.1:79187336-79187355 | MS.gene064025:CDS | 25.0% |
AAAGAAAGAACAAAAAGGGT+AGG | - | chr6.1:79186672-79186691 | MS.gene064025:CDS | 30.0% | |
CACCAAAAGAAAGAACAAAA+AGG | - | chr6.1:79186667-79186686 | MS.gene064025:CDS | 30.0% | |
CTACTCTGGACTTAAAATAT+AGG | + | chr6.1:79187580-79187599 | None:intergenic | 30.0% | |
GGAAAATGTACTCCTTAAAA+AGG | - | chr6.1:79186613-79186632 | MS.gene064025:CDS | 30.0% | |
TTCAGACAGATTACGAAAAA+TGG | - | chr6.1:79187446-79187465 | MS.gene064025:intron | 30.0% | |
TTGAATGTAACCACATGTAT+CGG | - | chr6.1:79187659-79187678 | MS.gene064025:intron | 30.0% | |
! | ACCCTTTTTGTTCTTTCTTT+TGG | + | chr6.1:79186672-79186691 | None:intergenic | 30.0% |
!! | CTTTCTTTTGGTGTATTCTT+TGG | + | chr6.1:79186660-79186679 | None:intergenic | 30.0% |
!!! | TGATTTTTTGTTTTACGCAG+CGG | - | chr6.1:79186776-79186795 | MS.gene064025:intron | 30.0% |
AAAAATCAAGTCACGTTCCA+TGG | + | chr6.1:79186764-79186783 | None:intergenic | 35.0% | |
CTTCAGATTGAACACATGTT+CGG | + | chr6.1:79187706-79187725 | None:intergenic | 35.0% | |
TTCAATGTTTGAAGAGGAAG+AGG | - | chr6.1:79186802-79186821 | MS.gene064025:intron | 35.0% | |
TTGAATCTGCTTCATGTTCT+CGG | + | chr6.1:79187224-79187243 | None:intergenic | 35.0% | |
TTGTTCTTTACAGGACGAAT+TGG | - | chr6.1:79187780-79187799 | MS.gene064025:intron | 35.0% | |
! | AAACTCTGAAGAACAAGTAG+AGG | + | chr6.1:79186717-79186736 | None:intergenic | 35.0% |
! | ATGTGTTCAATCTGAAGTGT+TGG | - | chr6.1:79187709-79187728 | MS.gene064025:CDS | 35.0% |
! | TAATCTTCTTTTGCGTCTTC+TGG | - | chr6.1:79186932-79186951 | MS.gene064025:intron | 35.0% |
!! | TTGGTTCTGTTTCTTTCTAC+AGG | - | chr6.1:79187152-79187171 | MS.gene064025:intron | 35.0% |
AATACAACTGTGTTCACACC+TGG | + | chr6.1:79186881-79186900 | None:intergenic | 40.0% | |
AATTCATCTTCCTCAGGAGT+CGG | + | chr6.1:79187934-79187953 | None:intergenic | 40.0% | |
AGTGCTGTACAATACTCTCT+CGG | - | chr6.1:79187367-79187386 | MS.gene064025:CDS | 40.0% | |
CAGCACTATACACAACCAAA+AGG | + | chr6.1:79187354-79187373 | None:intergenic | 40.0% | |
CGGCAATTCAATGTTTGAAG+AGG | - | chr6.1:79186796-79186815 | MS.gene064025:intron | 40.0% | |
CTGTTCATTTATCTCGTCCA+TGG | + | chr6.1:79187200-79187219 | None:intergenic | 40.0% | |
GGAAGCAGAACTTGAAGAAT+TGG | - | chr6.1:79187801-79187820 | MS.gene064025:intron | 40.0% | |
TGTACTCCTTAAAAAGGCCA+CGG | - | chr6.1:79186619-79186638 | MS.gene064025:CDS | 40.0% | |
!! | GCAGATTCAAGAAGCATTGT+CGG | - | chr6.1:79187234-79187253 | MS.gene064025:intron | 40.0% |
!! | TGTTCAATCTGAAGTGTTGG+TGG | - | chr6.1:79187712-79187731 | MS.gene064025:CDS | 40.0% |
AAATCAGCAGCTGCACCAAT+TGG | + | chr6.1:79187262-79187281 | None:intergenic | 45.0% | |
AACAGGAGCAGCTACTATGA+AGG | - | chr6.1:79187026-79187045 | MS.gene064025:intron | 45.0% | |
ACGGTAGATGCGTTAAGAAC+AGG | - | chr6.1:79187009-79187028 | MS.gene064025:intron | 45.0% | |
AGATGAATTGGCAGCTTTGC+AGG | - | chr6.1:79187945-79187964 | MS.gene064025:CDS | 45.0% | |
GACTCCTGAGGAAGATGAAT+TGG | - | chr6.1:79187933-79187952 | MS.gene064025:CDS | 45.0% | |
GTGCTGTACAATACTCTCTC+GGG | - | chr6.1:79187368-79187387 | MS.gene064025:CDS | 45.0% | |
! | GAACAACAAGTTGAGCAGCT+TGG | - | chr6.1:79186831-79186850 | MS.gene064025:intron | 45.0% |
! | TCTTCTTTTGCGTCTTCTGG+TGG | - | chr6.1:79186935-79186954 | MS.gene064025:intron | 45.0% |
! | TGATGACGTTGACAAGACCA+TGG | - | chr6.1:79187180-79187199 | MS.gene064025:intron | 45.0% |
!! | AAGTGTTGGTGGTGCTACAT+TGG | - | chr6.1:79187723-79187742 | MS.gene064025:CDS | 45.0% |
!! | AGAATTGGAGAGTGCTGAGT+TGG | - | chr6.1:79187816-79187835 | MS.gene064025:intron | 45.0% |
!! | CAATACAGTGCCGATACATG+TGG | + | chr6.1:79187672-79187691 | None:intergenic | 45.0% |
ATCGGCACTGTATTGCGTGT+CGG | - | chr6.1:79187677-79187696 | MS.gene064025:intron | 50.0% | |
CCAGTTGCGTATTCATGACC+AGG | - | chr6.1:79186860-79186879 | MS.gene064025:intron | 50.0% | |
CCTGGTCATGAATACGCAAC+TGG | + | chr6.1:79186863-79186882 | None:intergenic | 50.0% | |
GCTGCCAATTCATCTTCCTC+AGG | + | chr6.1:79187940-79187959 | None:intergenic | 50.0% | |
TAACGCATCTACCGTTTCCG+TGG | + | chr6.1:79187004-79187023 | None:intergenic | 50.0% | |
TGCTAAAGCCACCACGGAAA+CGG | - | chr6.1:79186990-79187009 | MS.gene064025:intron | 50.0% | |
! | CTTCTGCCGTGGCCTTTTTA+AGG | + | chr6.1:79186628-79186647 | None:intergenic | 50.0% |
! | TCTTTTGCGTCTTCTGGTGG+TGG | - | chr6.1:79186938-79186957 | MS.gene064025:intron | 50.0% |
!! | AGAAGGTGCTAAAGCCACCA+CGG | - | chr6.1:79186984-79187003 | MS.gene064025:intron | 50.0% |
!! | GAAGCATTGTCGGCTCCAAT+TGG | - | chr6.1:79187244-79187263 | MS.gene064025:intron | 50.0% |
!! | TGTTGGTGGTGCTACATTGG+TGG | - | chr6.1:79187726-79187745 | MS.gene064025:CDS | 50.0% |
!!! | GGCTTTTTCAACTTCTGCCG+TGG | + | chr6.1:79186639-79186658 | None:intergenic | 50.0% |
!!! | TGCAGCTGCTGATTTTGACG+AGG | - | chr6.1:79187267-79187286 | MS.gene064025:intron | 50.0% |
! | GAGTCGGCTTTGCAGGAACA+GGG | + | chr6.1:79187918-79187937 | None:intergenic | 55.0% |
CCACAGTGCATGTCCCAGCT+GGG | - | chr6.1:79187878-79187897 | MS.gene064025:intron | 60.0% | |
CCAGCTGGGACATGCACTGT+GGG | + | chr6.1:79187880-79187899 | None:intergenic | 60.0% | |
CGCATCTACCGTTTCCGTGG+TGG | + | chr6.1:79187001-79187020 | None:intergenic | 60.0% | |
GGAGCAGGAGCTGTAGTTGC+TGG | + | chr6.1:79187859-79187878 | None:intergenic | 60.0% | |
GGCAGCTTTGCAGGCTGAGA+TGG | - | chr6.1:79187954-79187973 | MS.gene064025:CDS | 60.0% | |
TTTGCAGGAACAGGGCGTGC+AGG | + | chr6.1:79187910-79187929 | None:intergenic | 60.0% | |
! | GGAGTCGGCTTTGCAGGAAC+AGG | + | chr6.1:79187919-79187938 | None:intergenic | 60.0% |
! | TCCTCAGGAGTCGGCTTTGC+AGG | + | chr6.1:79187925-79187944 | None:intergenic | 60.0% |
! | TCCTGCAAAGCCGACTCCTG+AGG | - | chr6.1:79187921-79187940 | MS.gene064025:CDS | 60.0% |
CAGTGCATGTCCCAGCTGGG+AGG | - | chr6.1:79187881-79187900 | MS.gene064025:intron | 65.0% | |
CCCACAGTGCATGTCCCAGC+TGG | - | chr6.1:79187877-79187896 | MS.gene064025:intron | 65.0% | |
CCCAGCTGGGACATGCACTG+TGG | + | chr6.1:79187881-79187900 | None:intergenic | 65.0% | |
GGGACATGCACTGTGGGAGC+AGG | + | chr6.1:79187874-79187893 | None:intergenic | 65.0% | |
GTGCAGGTTGCCTCCCAGCT+GGG | + | chr6.1:79187894-79187913 | None:intergenic | 65.0% | |
CGTGCAGGTTGCCTCCCAGC+TGG | + | chr6.1:79187895-79187914 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 79186599 | 79187984 | 79186599 | ID=MS.gene064025 |
chr6.1 | mRNA | 79186599 | 79187984 | 79186599 | ID=MS.gene064025.t1;Parent=MS.gene064025 |
chr6.1 | exon | 79187894 | 79187984 | 79187894 | ID=MS.gene064025.t1.exon1;Parent=MS.gene064025.t1 |
chr6.1 | CDS | 79187894 | 79187984 | 79187894 | ID=cds.MS.gene064025.t1;Parent=MS.gene064025.t1 |
chr6.1 | exon | 79187702 | 79187787 | 79187702 | ID=MS.gene064025.t1.exon2;Parent=MS.gene064025.t1 |
chr6.1 | CDS | 79187702 | 79187787 | 79187702 | ID=cds.MS.gene064025.t1;Parent=MS.gene064025.t1 |
chr6.1 | exon | 79187519 | 79187610 | 79187519 | ID=MS.gene064025.t1.exon3;Parent=MS.gene064025.t1 |
chr6.1 | CDS | 79187519 | 79187610 | 79187519 | ID=cds.MS.gene064025.t1;Parent=MS.gene064025.t1 |
chr6.1 | exon | 79187295 | 79187409 | 79187295 | ID=MS.gene064025.t1.exon4;Parent=MS.gene064025.t1 |
chr6.1 | CDS | 79187295 | 79187409 | 79187295 | ID=cds.MS.gene064025.t1;Parent=MS.gene064025.t1 |
chr6.1 | exon | 79186599 | 79186790 | 79186599 | ID=MS.gene064025.t1.exon5;Parent=MS.gene064025.t1 |
chr6.1 | CDS | 79186599 | 79186790 | 79186599 | ID=cds.MS.gene064025.t1;Parent=MS.gene064025.t1 |
Gene Sequence |
Protein sequence |