Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013466.t1 | XP_003602432.1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 1.50E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013466.t1 | Q56WD3 | 67.5 | 421 | 132 | 2 | 16 | 432 | 19 | 438 | 1.8e-166 | 587.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013466.t1 | G7J9P1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 1.1e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013466 | MS.gene06574 | PPI |
| MS.gene013466 | MS.gene049444 | PPI |
| MS.gene049443 | MS.gene013466 | PPI |
| MS.gene013466 | MS.gene013467 | PPI |
| MS.gene06573 | MS.gene013466 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013466.t1 | MTR_3g093290 | 98.000 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 0.0 | 908 |
| MS.gene013466.t1 | MTR_3g093270 | 93.987 | 449 | 26 | 1 | 3 | 450 | 2 | 450 | 0.0 | 851 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013466.t1 | AT1G18010 | 67.981 | 431 | 133 | 2 | 16 | 442 | 19 | 448 | 0.0 | 616 |
| MS.gene013466.t1 | AT1G18000 | 67.981 | 431 | 133 | 2 | 16 | 442 | 19 | 448 | 0.0 | 616 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGTGTGGTTTCTGTTCT+TGG | 0.163642 | 3.4:-85221777 | MS.gene013466:CDS |
| CTTTCACAAATCATCCTTAT+TGG | 0.164299 | 3.4:-85222635 | MS.gene013466:CDS |
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.4:-85222590 | MS.gene013466:CDS |
| CTGTTCTTGGATCTATTATA+TGG | 0.213344 | 3.4:-85221764 | MS.gene013466:CDS |
| AGATGCCATGTTTCAGAGTA+TGG | 0.258685 | 3.4:-85221628 | MS.gene013466:CDS |
| TGTTTCAGAGTATGGTTTAC+TGG | 0.266519 | 3.4:-85221620 | MS.gene013466:CDS |
| TTTCACAAATCATCCTTATT+GGG | 0.293770 | 3.4:-85222634 | MS.gene013466:CDS |
| GCATCGGAGCTGGACTATTA+TGG | 0.301187 | 3.4:-85222337 | MS.gene013466:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.307736 | 3.4:-85222161 | MS.gene013466:CDS |
| TGTTCTTGGATCTATTATAT+GGG | 0.310982 | 3.4:-85221763 | MS.gene013466:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.4:-85222236 | MS.gene013466:CDS |
| CGATTGTAATTAAGAATAAA+AGG | 0.315237 | 3.4:+85222203 | None:intergenic |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.4:+85222280 | None:intergenic |
| TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3.4:-85222153 | MS.gene013466:CDS |
| AGGTACACAGGATTCTATAA+AGG | 0.355926 | 3.4:-85221174 | MS.gene013466:CDS |
| AGTATGGTTTACTGGTCTAT+TGG | 0.363404 | 3.4:-85221612 | MS.gene013466:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.4:-85221841 | MS.gene013466:CDS |
| GCTGTTCTCGGCATCGGAGC+TGG | 0.372968 | 3.4:-85222347 | MS.gene013466:CDS |
| ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3.4:-85221715 | MS.gene013466:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.383645 | 3.4:-85221867 | MS.gene013466:CDS |
| TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3.4:-85222007 | MS.gene013466:CDS |
| TTCACAATCAACTGTGTCAT+TGG | 0.386175 | 3.4:+85221096 | None:intergenic |
| TCCGGTGCTGTTCTCGGCAT+CGG | 0.396725 | 3.4:-85222353 | MS.gene013466:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.404295 | 3.4:-85222584 | MS.gene013466:CDS |
| TGACACAGTTGATTGTGAAT+TGG | 0.408150 | 3.4:-85221092 | MS.gene013466:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.4:-85221858 | MS.gene013466:CDS |
| GCTTGTGTAGAGTGCGGTTA+AGG | 0.415646 | 3.4:+85222523 | None:intergenic |
| GTAGTTTCCGGTGCTGTTCT+CGG | 0.424731 | 3.4:-85222359 | MS.gene013466:CDS |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.4:-85221977 | MS.gene013466:CDS |
| TAGAAAGAAAAGAGGAATTG+TGG | 0.430494 | 3.4:-85221802 | MS.gene013466:CDS |
| TTACTGGTCTATTGGAGCAT+TGG | 0.434243 | 3.4:-85221604 | MS.gene013466:CDS |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.4:-85221857 | MS.gene013466:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.440838 | 3.4:-85221810 | MS.gene013466:CDS |
| AGAAAGAAAAGAGGAATTGT+GGG | 0.444597 | 3.4:-85221801 | MS.gene013466:CDS |
| GACACAGTTGATTGTGAATT+GGG | 0.445991 | 3.4:-85221091 | MS.gene013466:CDS |
| ACTAAGCTATCCGTTATTGT+TGG | 0.457774 | 3.4:-85221058 | MS.gene013466:CDS |
| GGTACACAGGATTCTATAAA+GGG | 0.462985 | 3.4:-85221173 | MS.gene013466:CDS |
| CTTTCAGGAATGGGTGGTGG+TGG | 0.463947 | 3.4:-85222575 | MS.gene013466:CDS |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.4:-85222083 | MS.gene013466:CDS |
| TCCTCCTATGTCCTTTACAC+TGG | 0.471720 | 3.4:-85222425 | MS.gene013466:CDS |
| TATTATATGGGGTGGTGCAT+TGG | 0.473668 | 3.4:-85221751 | MS.gene013466:CDS |
| AGATGTCATAATAGCGCCTT+GGG | 0.476314 | 3.4:+85222310 | None:intergenic |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.477707 | 3.4:-85222585 | MS.gene013466:CDS |
| ATCATTAAAACCAACAATAA+CGG | 0.482912 | 3.4:+85221048 | None:intergenic |
| ACAAATCATCCTTATTGGGT+TGG | 0.488006 | 3.4:-85222630 | MS.gene013466:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.4:-85221852 | MS.gene013466:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.4:-85222233 | MS.gene013466:CDS |
| GAAAGAGCATTGAACATGCC+TGG | 0.498347 | 3.4:+85222593 | None:intergenic |
| ATAAGGATGATTTGTGAAAG+AGG | 0.505507 | 3.4:+85222638 | None:intergenic |
| GAGTGCGGTTAAGGCGTTGT+TGG | 0.510267 | 3.4:+85222532 | None:intergenic |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.4:+85222281 | None:intergenic |
| TTCCTTTACGATTCATGGGT+GGG | 0.515970 | 3.4:+85222285 | None:intergenic |
| GCTCTTTCAGGAATGGGTGG+TGG | 0.525680 | 3.4:-85222578 | MS.gene013466:CDS |
| GTTCTTGGATCTATTATATG+GGG | 0.526358 | 3.4:-85221762 | MS.gene013466:CDS |
| AGAGGAAAGAACCAGTGTAA+AGG | 0.529052 | 3.4:+85222414 | None:intergenic |
| TCCGATGCCGAGAACAGCAC+CGG | 0.530799 | 3.4:+85222352 | None:intergenic |
| ATTGGGGAGCACAAATGATA+GGG | 0.533554 | 3.4:-85221866 | MS.gene013466:CDS |
| CATCATTAACAGTAGCAGCT+TGG | 0.533655 | 3.4:+85222174 | None:intergenic |
| AGGAATTGTGGGAATTAGTG+TGG | 0.534409 | 3.4:-85221790 | MS.gene013466:CDS |
| GTTGTTTATGATTGTAGTAG+AGG | 0.539382 | 3.4:+85222396 | None:intergenic |
| AAGATGTCATAATAGCGCCT+TGG | 0.539436 | 3.4:+85222309 | None:intergenic |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.4:-85221578 | MS.gene013466:intron |
| ACCTGCGAAAAGAGTTAAGT+GGG | 0.545077 | 3.4:+85222451 | None:intergenic |
| TTTATTCTTAATTACAATCG+TGG | 0.549060 | 3.4:-85222200 | MS.gene013466:CDS |
| CAAGCTGCTACTGTTAATGA+TGG | 0.549832 | 3.4:-85222173 | MS.gene013466:CDS |
| TATAAAGGGATACAAAGTGC+GGG | 0.551438 | 3.4:-85221159 | MS.gene013466:CDS |
| TACCCACCCATGAATCGTAA+AGG | 0.557859 | 3.4:-85222287 | MS.gene013466:CDS |
| CAATTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.4:-85221906 | MS.gene013466:CDS |
| TGTTCAACGACACCACCCAT+TGG | 0.559220 | 3.4:+85222725 | None:intergenic |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.4:+85222089 | None:intergenic |
| GTTCCTTTACGATTCATGGG+TGG | 0.571188 | 3.4:+85222284 | None:intergenic |
| AGAACCAGTGTAAAGGACAT+AGG | 0.581796 | 3.4:+85222421 | None:intergenic |
| AACCTGCGAAAAGAGTTAAG+TGG | 0.585770 | 3.4:+85222450 | None:intergenic |
| CTTGGATCTATTATATGGGG+TGG | 0.589106 | 3.4:-85221759 | MS.gene013466:CDS |
| AATGCTCTTTCAGGAATGGG+TGG | 0.595210 | 3.4:-85222581 | MS.gene013466:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.4:+85221966 | None:intergenic |
| GATTAAACATAAACATGGCA+AGG | 0.600741 | 3.4:-85221721 | MS.gene013466:CDS |
| TGAGGTTTCCGGTGGTTGAG+TGG | 0.602501 | 3.4:+85222691 | None:intergenic |
| AGAATCAGCCACTCAACCAC+CGG | 0.603694 | 3.4:-85222699 | MS.gene013466:CDS |
| GGTGGCATCTATAACATCCT+CGG | 0.603879 | 3.4:-85222476 | MS.gene013466:CDS |
| TGTTATAGATGCCACCACCT+AGG | 0.620884 | 3.4:+85222483 | None:intergenic |
| TTGGACTTACACAGGTACAC+AGG | 0.625881 | 3.4:-85221186 | MS.gene013466:intron |
| GGACTATTATGGAGTGCCCA+AGG | 0.635009 | 3.4:-85222326 | MS.gene013466:CDS |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.4:-85222033 | MS.gene013466:CDS |
| ATAAAGGGATACAAAGTGCG+GGG | 0.639763 | 3.4:-85221158 | MS.gene013466:CDS |
| ACCAGTGTAAAGGACATAGG+AGG | 0.645176 | 3.4:+85222424 | None:intergenic |
| AATTTAGTTTGAGAACAAGA+GGG | 0.657205 | 3.4:-85221905 | MS.gene013466:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.664350 | 3.4:-85221726 | MS.gene013466:CDS |
| AAAGAGTTAAGTGGGGTCCG+AGG | 0.668411 | 3.4:+85222459 | None:intergenic |
| CTATAAAGGGATACAAAGTG+CGG | 0.672233 | 3.4:-85221160 | MS.gene013466:CDS |
| GTAAACCATACTCTGAAACA+TGG | 0.672850 | 3.4:+85221623 | None:intergenic |
| TAAAGGGATACAAAGTGCGG+GGG | 0.692575 | 3.4:-85221157 | MS.gene013466:CDS |
| TGTGAAGCTTGTGTAGAGTG+CGG | 0.751066 | 3.4:+85222517 | None:intergenic |
| CCTGCGAAAAGAGTTAAGTG+GGG | 0.759382 | 3.4:+85222452 | None:intergenic |
| TGTGAAAGAGGACAATAACG+AGG | 0.786049 | 3.4:-85221019 | MS.gene013466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAATACAAAACAAA+AGG | + | chr3.4:85222073-85222092 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTATTTTTCTTTT+GGG | - | chr3.4:85222074-85222093 | MS.gene013466:CDS | 15.0% |
| !!! | TTTGTTTTGTATTTTTCTTT+TGG | - | chr3.4:85222073-85222092 | MS.gene013466:CDS | 15.0% |
| !! | AATAATCCACAAAAAAATAC+TGG | + | chr3.4:85222395-85222414 | None:intergenic | 20.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.4:85222004-85222023 | MS.gene013466:CDS | 20.0% |
| !! | ATCATTAAAACCAACAATAA+CGG | + | chr3.4:85222685-85222704 | None:intergenic | 20.0% |
| !! | CGATTGTAATTAAGAATAAA+AGG | + | chr3.4:85221530-85221549 | None:intergenic | 20.0% |
| !! | TGAAACTTCAAGAAAATATT+TGG | - | chr3.4:85222329-85222348 | MS.gene013466:CDS | 20.0% |
| !! | TTCTTAAATTGTTCTACAAT+TGG | - | chr3.4:85221723-85221742 | MS.gene013466:CDS | 20.0% |
| !! | TTTATTCTTAATTACAATCG+TGG | - | chr3.4:85221530-85221549 | MS.gene013466:intron | 20.0% |
| !!! | ATTGTTGGTTTTAATGATTT+TGG | - | chr3.4:85222687-85222706 | MS.gene013466:CDS | 20.0% |
| !!! | TAATTTGTAGTTTTAGTGAT+TGG | - | chr3.4:85222452-85222471 | MS.gene013466:CDS | 20.0% |
| ! | ATTTCCAAATTTCAACTATC+AGG | + | chr3.4:85222496-85222515 | None:intergenic | 25.0% |
| ! | TGTTCTTGGATCTATTATAT+GGG | - | chr3.4:85221967-85221986 | MS.gene013466:CDS | 25.0% |
| ! | TTAACTATTCCATTTGTTCT+TGG | - | chr3.4:85222211-85222230 | MS.gene013466:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.4:85221920-85221939 | MS.gene013466:CDS | 25.0% |
| ! | TTTCACAAATCATCCTTATT+GGG | - | chr3.4:85221096-85221115 | MS.gene013466:CDS | 25.0% |
| ! | TTTCCAAATTTCAACTATCA+GGG | + | chr3.4:85222495-85222514 | None:intergenic | 25.0% |
| !! | GAACTTACATTTCAATTTTC+TGG | - | chr3.4:85221465-85221484 | MS.gene013466:intron | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.4:85221569-85221588 | MS.gene013466:intron | 25.0% |
| !!! | AATTTAGTTTGAGAACAAGA+GGG | - | chr3.4:85221825-85221844 | MS.gene013466:CDS | 25.0% |
| !!! | GTTGAACAATGTGTTTTATT+GGG | - | chr3.4:85221847-85221866 | MS.gene013466:CDS | 25.0% |
| !!! | TATCAACCAGTATTTTTTTG+TGG | - | chr3.4:85222386-85222405 | MS.gene013466:CDS | 25.0% |
| !!! | TTGAACAATGTGTTTTATTG+GGG | - | chr3.4:85221848-85221867 | MS.gene013466:CDS | 25.0% |
| AAAAACAAACCAACCCAATA+AGG | + | chr3.4:85221112-85221131 | None:intergenic | 30.0% | |
| AAAATGCAACCAAGAACAAA+TGG | + | chr3.4:85222223-85222242 | None:intergenic | 30.0% | |
| AGAAAGAAAAGAGGAATTGT+GGG | - | chr3.4:85221929-85221948 | MS.gene013466:CDS | 30.0% | |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.4:85221647-85221666 | MS.gene013466:CDS | 30.0% | |
| CTGTTCTTGGATCTATTATA+TGG | - | chr3.4:85221966-85221985 | MS.gene013466:CDS | 30.0% | |
| CTTTCACAAATCATCCTTAT+TGG | - | chr3.4:85221095-85221114 | MS.gene013466:CDS | 30.0% | |
| GATTAAACATAAACATGGCA+AGG | - | chr3.4:85222009-85222028 | MS.gene013466:CDS | 30.0% | |
| GTTCTTGGATCTATTATATG+GGG | - | chr3.4:85221968-85221987 | MS.gene013466:CDS | 30.0% | |
| GTTGTTTATGATTGTAGTAG+AGG | + | chr3.4:85221337-85221356 | None:intergenic | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.4:85221452-85221471 | None:intergenic | 30.0% | |
| TAGAAAGAAAAGAGGAATTG+TGG | - | chr3.4:85221928-85221947 | MS.gene013466:CDS | 30.0% | |
| TATCCCTGATAGTTGAAATT+TGG | - | chr3.4:85222489-85222508 | MS.gene013466:CDS | 30.0% | |
| TGGAACTTATATAGGTTTCA+TGG | - | chr3.4:85221577-85221596 | MS.gene013466:intron | 30.0% | |
| TTAGTGATTGGCATTTCATT+TGG | - | chr3.4:85222464-85222483 | MS.gene013466:CDS | 30.0% | |
| ! | AAGAAGTGATGAAGTTTTTG+AGG | + | chr3.4:85221060-85221079 | None:intergenic | 30.0% |
| ! | ATAAGGATGATTTGTGAAAG+AGG | + | chr3.4:85221095-85221114 | None:intergenic | 30.0% |
| ! | GGTTGAACAATGTGTTTTAT+TGG | - | chr3.4:85221846-85221865 | MS.gene013466:CDS | 30.0% |
| ! | TACACAAGCTTCACAATTTT+CGG | - | chr3.4:85221221-85221240 | MS.gene013466:intron | 30.0% |
| !! | CAATTTAGTTTGAGAACAAG+AGG | - | chr3.4:85221824-85221843 | MS.gene013466:CDS | 30.0% |
| !!! | AATGATTTTGGTTGTGAAAG+AGG | - | chr3.4:85222699-85222718 | MS.gene013466:CDS | 30.0% |
| !!! | TTCTGGAGTATTTTCAACAT+GGG | - | chr3.4:85221482-85221501 | MS.gene013466:intron | 30.0% |
| !!! | TTTCTGGAGTATTTTCAACA+TGG | - | chr3.4:85221481-85221500 | MS.gene013466:intron | 30.0% |
| ACAAATCATCCTTATTGGGT+TGG | - | chr3.4:85221100-85221119 | MS.gene013466:CDS | 35.0% | |
| ACTAAGCTATCCGTTATTGT+TGG | - | chr3.4:85222672-85222691 | MS.gene013466:CDS | 35.0% | |
| ACTAATGTTTGGACTTACAC+AGG | - | chr3.4:85222536-85222555 | MS.gene013466:CDS | 35.0% | |
| AGGTACACAGGATTCTATAA+AGG | - | chr3.4:85222556-85222575 | MS.gene013466:CDS | 35.0% | |
| ATTAGTGTGGTTTCTGTTCT+TGG | - | chr3.4:85221953-85221972 | MS.gene013466:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.4:85221873-85221892 | MS.gene013466:CDS | 35.0% | |
| CTACTGCTAGTACTAATGTT+TGG | - | chr3.4:85222525-85222544 | MS.gene013466:CDS | 35.0% | |
| CTATAAAGGGATACAAAGTG+CGG | - | chr3.4:85222570-85222589 | MS.gene013466:CDS | 35.0% | |
| GACACAGTTGATTGTGAATT+GGG | - | chr3.4:85222639-85222658 | MS.gene013466:CDS | 35.0% | |
| GGTACACAGGATTCTATAAA+GGG | - | chr3.4:85222557-85222576 | MS.gene013466:CDS | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.4:85221453-85221472 | None:intergenic | 35.0% | |
| TATAAAGGGATACAAAGTGC+GGG | - | chr3.4:85222571-85222590 | MS.gene013466:CDS | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.4:85221644-85221663 | None:intergenic | 35.0% | |
| TGACACAGTTGATTGTGAAT+TGG | - | chr3.4:85222638-85222657 | MS.gene013466:CDS | 35.0% | |
| TGTTTCAGAGTATGGTTTAC+TGG | - | chr3.4:85222110-85222129 | MS.gene013466:CDS | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.4:85221146-85221165 | MS.gene013466:CDS | 35.0% | |
| TTCACAATCAACTGTGTCAT+TGG | + | chr3.4:85222637-85222656 | None:intergenic | 35.0% | |
| ! | AGTATGGTTTACTGGTCTAT+TGG | - | chr3.4:85222118-85222137 | MS.gene013466:CDS | 35.0% |
| ! | TCATGGCTTTTATGTCACTA+GGG | - | chr3.4:85221594-85221613 | MS.gene013466:CDS | 35.0% |
| ! | TTCACAATTTTCGGAATCCT+AGG | - | chr3.4:85221230-85221249 | MS.gene013466:intron | 35.0% |
| ! | TTCATGGCTTTTATGTCACT+AGG | - | chr3.4:85221593-85221612 | MS.gene013466:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.4:85221889-85221908 | MS.gene013466:CDS | 35.0% |
| !! | GTAAACCATACTCTGAAACA+TGG | + | chr3.4:85222110-85222129 | None:intergenic | 35.0% |
| !!! | GATGAAGTTTTTGAGGTTTC+CGG | + | chr3.4:85221053-85221072 | None:intergenic | 35.0% |
| !!! | TTGGTTTGTTTTTGTTGTCC+AGG | - | chr3.4:85221119-85221138 | MS.gene013466:CDS | 35.0% |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.4:85221697-85221716 | MS.gene013466:CDS | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.4:85221767-85221786 | None:intergenic | 40.0% | |
| AACCTGCGAAAAGAGTTAAG+TGG | + | chr3.4:85221283-85221302 | None:intergenic | 40.0% | |
| AAGATGTCATAATAGCGCCT+TGG | + | chr3.4:85221424-85221443 | None:intergenic | 40.0% | |
| ACATAAACATGGCAAGGTCT+TGG | - | chr3.4:85222015-85222034 | MS.gene013466:CDS | 40.0% | |
| ACCTGCGAAAAGAGTTAAGT+GGG | + | chr3.4:85221282-85221301 | None:intergenic | 40.0% | |
| AGAACCAGTGTAAAGGACAT+AGG | + | chr3.4:85221312-85221331 | None:intergenic | 40.0% | |
| AGAGGAAAGAACCAGTGTAA+AGG | + | chr3.4:85221319-85221338 | None:intergenic | 40.0% | |
| AGATGCCATGTTTCAGAGTA+TGG | - | chr3.4:85222102-85222121 | MS.gene013466:CDS | 40.0% | |
| AGATGTCATAATAGCGCCTT+GGG | + | chr3.4:85221423-85221442 | None:intergenic | 40.0% | |
| AGGAATTGTGGGAATTAGTG+TGG | - | chr3.4:85221940-85221959 | MS.gene013466:CDS | 40.0% | |
| ATAAAGGGATACAAAGTGCG+GGG | - | chr3.4:85222572-85222591 | MS.gene013466:CDS | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.4:85221878-85221897 | MS.gene013466:CDS | 40.0% | |
| CAAGCTGCTACTGTTAATGA+TGG | - | chr3.4:85221557-85221576 | MS.gene013466:intron | 40.0% | |
| CATCATTAACAGTAGCAGCT+TGG | + | chr3.4:85221559-85221578 | None:intergenic | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.4:85221971-85221990 | MS.gene013466:CDS | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.4:85221872-85221891 | MS.gene013466:CDS | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.4:85221145-85221164 | MS.gene013466:CDS | 40.0% | |
| TATTATATGGGGTGGTGCAT+TGG | - | chr3.4:85221979-85221998 | MS.gene013466:CDS | 40.0% | |
| TGTGAAAGAGGACAATAACG+AGG | - | chr3.4:85222711-85222730 | MS.gene013466:CDS | 40.0% | |
| TTCCTTTACGATTCATGGGT+GGG | + | chr3.4:85221448-85221467 | None:intergenic | 40.0% | |
| ! | ACAATTTTCGGAATCCTAGG+TGG | - | chr3.4:85221233-85221252 | MS.gene013466:intron | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.4:85221864-85221883 | MS.gene013466:CDS | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.4:85221863-85221882 | MS.gene013466:CDS | 40.0% |
| ! | TGGCAAGGTCTTGGATTTTA+AGG | - | chr3.4:85222024-85222043 | MS.gene013466:CDS | 40.0% |
| ! | TTACTGGTCTATTGGAGCAT+TGG | - | chr3.4:85222126-85222145 | MS.gene013466:CDS | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.4:85222152-85222171 | MS.gene013466:CDS | 40.0% |
| !! | CAAGCTTTTGCTGTAGTTTC+CGG | - | chr3.4:85221359-85221378 | MS.gene013466:intron | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.4:85222031-85222050 | MS.gene013466:CDS | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.4:85221485-85221504 | MS.gene013466:intron | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.4:85221494-85221513 | MS.gene013466:intron | 40.0% |
| AATGCTCTTTCAGGAATGGG+TGG | - | chr3.4:85221149-85221168 | MS.gene013466:CDS | 45.0% | |
| ACCAGTGTAAAGGACATAGG+AGG | + | chr3.4:85221309-85221328 | None:intergenic | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+GGG | + | chr3.4:85221281-85221300 | None:intergenic | 45.0% | |
| GGCATGTTCAATGCTCTTTC+AGG | - | chr3.4:85221140-85221159 | MS.gene013466:CDS | 45.0% | |
| GGTGGCATCTATAACATCCT+CGG | - | chr3.4:85221254-85221273 | MS.gene013466:intron | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.4:85221449-85221468 | None:intergenic | 45.0% | |
| TAAAGGGATACAAAGTGCGG+GGG | - | chr3.4:85222573-85222592 | MS.gene013466:CDS | 45.0% | |
| TACCCACCCATGAATCGTAA+AGG | - | chr3.4:85221443-85221462 | MS.gene013466:intron | 45.0% | |
| TCCTCCTATGTCCTTTACAC+TGG | - | chr3.4:85221305-85221324 | MS.gene013466:intron | 45.0% | |
| TGTGAAGCTTGTGTAGAGTG+CGG | + | chr3.4:85221216-85221235 | None:intergenic | 45.0% | |
| TGTTATAGATGCCACCACCT+AGG | + | chr3.4:85221250-85221269 | None:intergenic | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.4:85221753-85221772 | MS.gene013466:CDS | 45.0% | |
| TTGGACTTACACAGGTACAC+AGG | - | chr3.4:85222544-85222563 | MS.gene013466:CDS | 45.0% | |
| ! | ATTTTCGGAATCCTAGGTGG+TGG | - | chr3.4:85221236-85221255 | MS.gene013466:intron | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.4:85221497-85221516 | MS.gene013466:intron | 45.0% |
| !! | GAAAGAGCATTGAACATGCC+TGG | + | chr3.4:85221140-85221159 | None:intergenic | 45.0% |
| !!! | GAAGTTTTTGAGGTTTCCGG+TGG | + | chr3.4:85221050-85221069 | None:intergenic | 45.0% |
| !!! | GAGTCTGGTTCTGATTTTGC+TGG | - | chr3.4:85222046-85222065 | MS.gene013466:CDS | 45.0% |
| !!! | ATTAAAAAAATATTATGTTT+TGG | + | chr3.4:85222302-85222321 | None:intergenic | 5.0% |
| AAAGAGTTAAGTGGGGTCCG+AGG | + | chr3.4:85221274-85221293 | None:intergenic | 50.0% | |
| AGAATCAGCCACTCAACCAC+CGG | - | chr3.4:85221031-85221050 | MS.gene013466:CDS | 50.0% | |
| GCATCGGAGCTGGACTATTA+TGG | - | chr3.4:85221393-85221412 | MS.gene013466:intron | 50.0% | |
| GCTTGTGTAGAGTGCGGTTA+AGG | + | chr3.4:85221210-85221229 | None:intergenic | 50.0% | |
| ! | CCCCACTTAACTCTTTTCGC+AGG | - | chr3.4:85221278-85221297 | MS.gene013466:intron | 50.0% |
| ! | GGACTATTATGGAGTGCCCA+AGG | - | chr3.4:85221404-85221423 | MS.gene013466:intron | 50.0% |
| !! | GTAGTTTCCGGTGCTGTTCT+CGG | - | chr3.4:85221371-85221390 | MS.gene013466:intron | 50.0% |
| GCTCTTTCAGGAATGGGTGG+TGG | - | chr3.4:85221152-85221171 | MS.gene013466:CDS | 55.0% | |
| TGAGGTTTCCGGTGGTTGAG+TGG | + | chr3.4:85221042-85221061 | None:intergenic | 55.0% | |
| ! | CTTTCAGGAATGGGTGGTGG+TGG | - | chr3.4:85221155-85221174 | MS.gene013466:CDS | 55.0% |
| !! | GAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.4:85221201-85221220 | None:intergenic | 55.0% |
| TCCGATGCCGAGAACAGCAC+CGG | + | chr3.4:85221381-85221400 | None:intergenic | 60.0% | |
| !! | TCCGGTGCTGTTCTCGGCAT+CGG | - | chr3.4:85221377-85221396 | MS.gene013466:intron | 60.0% |
| ! | GCTGTTCTCGGCATCGGAGC+TGG | - | chr3.4:85221383-85221402 | MS.gene013466:intron | 65.0% |
| GTGCGGGGGCTGCAGTTGCA+TGG | - | chr3.4:85222587-85222606 | MS.gene013466:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85221008 | 85222744 | 85221008 | ID=MS.gene013466 |
| chr3.4 | mRNA | 85221008 | 85222744 | 85221008 | ID=MS.gene013466.t1;Parent=MS.gene013466 |
| chr3.4 | exon | 85221579 | 85222744 | 85221579 | ID=MS.gene013466.t1.exon1;Parent=MS.gene013466.t1 |
| chr3.4 | CDS | 85221579 | 85222744 | 85221579 | ID=cds.MS.gene013466.t1;Parent=MS.gene013466.t1 |
| chr3.4 | exon | 85221008 | 85221194 | 85221008 | ID=MS.gene013466.t1.exon2;Parent=MS.gene013466.t1 |
| chr3.4 | CDS | 85221008 | 85221194 | 85221008 | ID=cds.MS.gene013466.t1;Parent=MS.gene013466.t1 |
| Gene Sequence |
| Protein sequence |
