Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013467.t1 | XP_003602430.1 | 99.7 | 387 | 1 | 0 | 1 | 387 | 46 | 432 | 5.50E-222 | 780 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013467.t1 | Q56WD3 | 70.3 | 391 | 111 | 2 | 1 | 387 | 49 | 438 | 6.9e-157 | 555.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013467.t1 | G7J9N9 | 99.7 | 387 | 1 | 0 | 1 | 387 | 46 | 432 | 3.9e-222 | 780.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013467 | MS.gene06574 | PPI |
| MS.gene049443 | MS.gene013467 | PPI |
| MS.gene06573 | MS.gene013467 | PPI |
| MS.gene013466 | MS.gene013467 | PPI |
| MS.gene049444 | MS.gene013467 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013467.t1 | MTR_3g093270 | 99.048 | 420 | 4 | 0 | 1 | 420 | 46 | 465 | 0.0 | 849 |
| MS.gene013467.t1 | MTR_3g093290 | 95.309 | 405 | 19 | 0 | 1 | 405 | 46 | 450 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013467.t1 | AT1G18010 | 70.823 | 401 | 112 | 2 | 1 | 397 | 49 | 448 | 0.0 | 582 |
| MS.gene013467.t1 | AT1G18000 | 70.823 | 401 | 112 | 2 | 1 | 397 | 49 | 448 | 0.0 | 582 |
Find 101 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAACTTATATAGGATTTA+TGG | 0.148115 | 3.4:-85211681 | MS.gene013467:CDS |
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.4:-85212118 | MS.gene013467:CDS |
| GAACTTACATTTCAATATTC+TGG | 0.208125 | 3.4:-85211793 | MS.gene013467:CDS |
| CTGTTCTTGGATCTATTATA+TGG | 0.213344 | 3.4:-85211292 | MS.gene013467:CDS |
| TTCTTAAATTGTTCTATAAT+TGG | 0.220500 | 3.4:-85211535 | MS.gene013467:CDS |
| ATTAGTGTGGTTGCTGTTCT+TGG | 0.242665 | 3.4:-85211305 | MS.gene013467:CDS |
| AACCATCAAAACTAACAATA+AGG | 0.245935 | 3.4:+85210190 | None:intergenic |
| TGTTTCAGAGTATGGTTTAC+TGG | 0.260675 | 3.4:-85211148 | MS.gene013467:CDS |
| GCATCGGAGCAGGTCTATTA+TGG | 0.282301 | 3.4:-85211865 | MS.gene013467:CDS |
| GGATGCTATGTTTCAGAGTA+TGG | 0.305991 | 3.4:-85211156 | MS.gene013467:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.4:-85211764 | MS.gene013467:CDS |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.4:+85211808 | None:intergenic |
| CGATTGTAATTAAGAATAAA+AGG | 0.319960 | 3.4:+85211731 | None:intergenic |
| GTTGAACAATGTGTTCTATT+GGG | 0.323401 | 3.4:-85211411 | MS.gene013467:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.333207 | 3.4:-85211689 | MS.gene013467:CDS |
| TACACAACCTTTGCAGTGTT+TGG | 0.337488 | 3.4:-85212037 | MS.gene013467:CDS |
| TGTTCTTGGATCTATTATAT+GGG | 0.338310 | 3.4:-85211291 | MS.gene013467:CDS |
| GGTTGAACAATGTGTTCTAT+TGG | 0.354183 | 3.4:-85211412 | MS.gene013467:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.4:-85211369 | MS.gene013467:CDS |
| ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3.4:-85211243 | MS.gene013467:CDS |
| TGGCACAGTTGATAGTGAAT+TGG | 0.376213 | 3.4:-85210235 | MS.gene013467:CDS |
| TCTTATTAACATGATTAAAC+TGG | 0.395610 | 3.4:+85211459 | None:intergenic |
| ATAGTTGCCGGCGCCCTTCT+CGG | 0.399605 | 3.4:-85211887 | MS.gene013467:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.404295 | 3.4:-85212112 | MS.gene013467:CDS |
| GCCCTTCTCGGCATCGGAGC+AGG | 0.411839 | 3.4:-85211875 | MS.gene013467:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.4:-85211386 | MS.gene013467:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.414914 | 3.4:-85211395 | MS.gene013467:CDS |
| AGGTACACTGGATTCTATAA+AGG | 0.416951 | 3.4:-85210317 | MS.gene013467:CDS |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.4:-85211505 | MS.gene013467:CDS |
| TAGAAAGAAAAGAGGAATTG+TGG | 0.430494 | 3.4:-85211330 | MS.gene013467:CDS |
| TTTGCAGTGTTTGGTATCCT+AGG | 0.434690 | 3.4:-85212028 | MS.gene013467:CDS |
| ACCATCAAAACTAACAATAA+GGG | 0.439660 | 3.4:+85210191 | None:intergenic |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.4:-85211385 | MS.gene013467:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.440838 | 3.4:-85211338 | MS.gene013467:CDS |
| AGAAAGAAAAGAGGAATTGT+GGG | 0.444597 | 3.4:-85211329 | MS.gene013467:CDS |
| GTGCCATTGGAGACACGTTA+TGG | 0.446519 | 3.4:+85210252 | None:intergenic |
| GAAGGAGCAACTTGTTTGAC+AGG | 0.447780 | 3.4:+85210131 | None:intergenic |
| ACAGACCCATTGTTATTTGA+AGG | 0.448515 | 3.4:+85210113 | None:intergenic |
| CTTTCAGGAATGGGTGGTGG+TGG | 0.449687 | 3.4:-85212103 | MS.gene013467:CDS |
| GGCACAGTTGATAGTGAATT+GGG | 0.449830 | 3.4:-85210234 | MS.gene013467:CDS |
| GCCGGCGCCCTTCTCGGCAT+CGG | 0.454685 | 3.4:-85211881 | MS.gene013467:CDS |
| CATCGGAGCAGGTCTATTAT+GGG | 0.456390 | 3.4:-85211864 | MS.gene013467:CDS |
| TTCACTATCAACTGTGCCAT+TGG | 0.456806 | 3.4:+85210239 | None:intergenic |
| GTTGTTTATGATTGTAGTAA+AGG | 0.465037 | 3.4:+85211924 | None:intergenic |
| GGTTGTGTAAAGTGCGGTTA+AGG | 0.466041 | 3.4:+85212051 | None:intergenic |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.4:-85211611 | MS.gene013467:CDS |
| TATTATATGGGGTGGTGCAT+TGG | 0.473668 | 3.4:-85211279 | MS.gene013467:CDS |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.477707 | 3.4:-85212113 | MS.gene013467:CDS |
| TTGCTCCTTCAAATAACAAT+GGG | 0.494966 | 3.4:-85210118 | MS.gene013467:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.4:-85211380 | MS.gene013467:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.4:-85211761 | MS.gene013467:CDS |
| TCCGATGCCGAGAAGGGCGC+CGG | 0.500028 | 3.4:+85211880 | None:intergenic |
| AAGTGCGGTTAAGGCGTTGT+TGG | 0.502056 | 3.4:+85212060 | None:intergenic |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.4:+85211809 | None:intergenic |
| TATAAAGGAATACAGAGTGC+AGG | 0.516636 | 3.4:-85210302 | MS.gene013467:CDS |
| CGGCAACTATAGCAAAAGCT+TGG | 0.518114 | 3.4:+85211900 | None:intergenic |
| GGTGGCATCTACAACATCCT+TGG | 0.520393 | 3.4:-85212004 | MS.gene013467:CDS |
| AGTATGGTTTACTGGTCCAT+TGG | 0.520928 | 3.4:-85211140 | MS.gene013467:CDS |
| GAAAGAGAACAATGAGGAAG+AGG | 0.525286 | 3.4:-85210159 | MS.gene013467:CDS |
| GCTCTTTCAGGAATGGGTGG+TGG | 0.525680 | 3.4:-85212106 | MS.gene013467:CDS |
| TGGAAGCAGTTGCGTTGACT+TGG | 0.530574 | 3.4:+85212080 | None:intergenic |
| CATCATTAACCGTAGCAGCT+TGG | 0.533655 | 3.4:+85211702 | None:intergenic |
| GTCATTAGCTAGAGCTCCAA+TGG | 0.537931 | 3.4:+85211124 | None:intergenic |
| CAAGCTGCTACGGTTAATGA+TGG | 0.538435 | 3.4:-85211701 | MS.gene013467:CDS |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.4:-85211106 | MS.gene013467:intron |
| GTGCAGGGGCTGCAGTTGCA+TGG | 0.546926 | 3.4:-85210286 | MS.gene013467:CDS |
| TTTATTCTTAATTACAATCG+TGG | 0.549385 | 3.4:-85211728 | MS.gene013467:CDS |
| ACCTGCTCCGATGCCGAGAA+GGG | 0.549963 | 3.4:+85211874 | None:intergenic |
| TATCCACCCATGAATCGTAA+AGG | 0.557634 | 3.4:-85211815 | MS.gene013467:CDS |
| CAGTTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.4:-85211434 | MS.gene013467:CDS |
| TCGTGGTGACCAAGCTGCTA+CGG | 0.558801 | 3.4:-85211711 | MS.gene013467:CDS |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.4:+85211617 | None:intergenic |
| GACCTGCTCCGATGCCGAGA+AGG | 0.561229 | 3.4:+85211873 | None:intergenic |
| GTTGCTCCTTCAAATAACAA+TGG | 0.563333 | 3.4:-85210119 | MS.gene013467:CDS |
| ATAAAGGAATACAGAGTGCA+GGG | 0.563470 | 3.4:-85210301 | MS.gene013467:CDS |
| TTGAACAATGTGTTCTATTG+GGG | 0.569076 | 3.4:-85211410 | MS.gene013467:CDS |
| TTACACATACACAGGTACAC+TGG | 0.578312 | 3.4:-85210329 | MS.gene013467:intron |
| GTTCTTGGATCTATTATATG+GGG | 0.579371 | 3.4:-85211290 | MS.gene013467:CDS |
| CTTGGATCTATTATATGGGG+TGG | 0.589106 | 3.4:-85211287 | MS.gene013467:CDS |
| AGAGAACAATGAGGAAGAGG+AGG | 0.591963 | 3.4:-85210156 | MS.gene013467:CDS |
| AATGCTCTTTCAGGAATGGG+TGG | 0.595210 | 3.4:-85212109 | MS.gene013467:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.4:+85211494 | None:intergenic |
| GATTAAACATAAACATGGCA+AGG | 0.600741 | 3.4:-85211249 | MS.gene013467:CDS |
| ATTGGGGAGCACAAATGATA+GGG | 0.606614 | 3.4:-85211394 | MS.gene013467:CDS |
| TCAACTTATGTACTCTACGC+TGG | 0.608201 | 3.4:-85211953 | MS.gene013467:CDS |
| GTGTTTGGTATCCTAGGTGG+TGG | 0.616607 | 3.4:-85212022 | MS.gene013467:CDS |
| TAACCATAACGTGTCTCCAA+TGG | 0.617946 | 3.4:-85210255 | MS.gene013467:CDS |
| AGGAATTGTGGGAATTAGTG+TGG | 0.626228 | 3.4:-85211318 | MS.gene013467:CDS |
| GTTCCTTTACGATTCATGGG+TGG | 0.628209 | 3.4:+85211812 | None:intergenic |
| TGTTGTAGATGCCACCACCT+AGG | 0.637389 | 3.4:+85212011 | None:intergenic |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.4:-85211561 | MS.gene013467:CDS |
| GGTCTATTATGGGCTGCACA+AGG | 0.640527 | 3.4:-85211854 | MS.gene013467:CDS |
| TAGGATACCAAACACTGCAA+AGG | 0.650625 | 3.4:+85212030 | None:intergenic |
| GCAGTGTTTGGTATCCTAGG+TGG | 0.651404 | 3.4:-85212025 | MS.gene013467:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.664350 | 3.4:-85211254 | MS.gene013467:CDS |
| AGTTTAGTTTGAGAACAAGA+GGG | 0.664873 | 3.4:-85211433 | MS.gene013467:CDS |
| GGCTGTGAAAGAGAACAATG+AGG | 0.665070 | 3.4:-85210165 | MS.gene013467:CDS |
| TGCAAAGGTTGTGTAAAGTG+CGG | 0.675637 | 3.4:+85212045 | None:intergenic |
| AAAGAGTTAAGTGAGGTCCA+AGG | 0.685571 | 3.4:+85211987 | None:intergenic |
| TAAAGGAATACAGAGTGCAG+GGG | 0.705125 | 3.4:-85210300 | MS.gene013467:CDS |
| CCTGCGAAAAGAGTTAAGTG+AGG | 0.734855 | 3.4:+85211980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATGATATATGAAATT+TGG | - | chr3.4:85211836-85211855 | MS.gene013467:CDS | 10.0% |
| !! | AAAGAAAAATACAAAACAAA+AGG | + | chr3.4:85211036-85211055 | None:intergenic | 15.0% |
| !! | AGTTAAAAATATATTTCAAG+TGG | + | chr3.4:85211288-85211307 | None:intergenic | 15.0% |
| !! | TTCTTAAATTGTTCTATAAT+TGG | - | chr3.4:85210686-85210705 | MS.gene013467:intron | 15.0% |
| !!! | GTTAATAAATATTTAGAGTA+GGG | - | chr3.4:85211561-85211580 | MS.gene013467:CDS | 15.0% |
| !!! | TGTTAATAAATATTTAGAGT+AGG | - | chr3.4:85211560-85211579 | MS.gene013467:CDS | 15.0% |
| !!! | TTAGTATTTGTTAACAAAAA+GGG | - | chr3.4:85211450-85211469 | MS.gene013467:CDS | 15.0% |
| !!! | TTGTTTTGTATTTTTCTTTT+GGG | - | chr3.4:85211037-85211056 | MS.gene013467:intron | 15.0% |
| !!! | TTTAGTATTTGTTAACAAAA+AGG | - | chr3.4:85211449-85211468 | MS.gene013467:CDS | 15.0% |
| !!! | TTTGTTTTGTATTTTTCTTT+TGG | - | chr3.4:85211036-85211055 | MS.gene013467:intron | 15.0% |
| !! | AAAAAGTAACTCAAAACAAA+TGG | + | chr3.4:85211201-85211220 | None:intergenic | 20.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.4:85210967-85210986 | MS.gene013467:intron | 20.0% |
| !! | CGATTGTAATTAAGAATAAA+AGG | + | chr3.4:85210493-85210512 | None:intergenic | 20.0% |
| !! | CTAAAAATACAAATTAGTGT+TGG | + | chr3.4:85211783-85211802 | None:intergenic | 20.0% |
| !! | GTATGATAATAGTTGAAATT+TGG | - | chr3.4:85211662-85211681 | MS.gene013467:CDS | 20.0% |
| !! | TCTTATTAACATGATTAAAC+TGG | + | chr3.4:85210765-85210784 | None:intergenic | 20.0% |
| !! | TTTATTCTTAATTACAATCG+TGG | - | chr3.4:85210493-85210512 | MS.gene013467:intron | 20.0% |
| !!! | TGATGATGATAATTGAAATT+TGG | - | chr3.4:85211744-85211763 | MS.gene013467:CDS | 20.0% |
| ! | AACCATCAAAACTAACAATA+AGG | + | chr3.4:85212034-85212053 | None:intergenic | 25.0% |
| ! | ACCATCAAAACTAACAATAA+GGG | + | chr3.4:85212033-85212052 | None:intergenic | 25.0% |
| ! | GAACTTACATTTCAATATTC+TGG | - | chr3.4:85210428-85210447 | MS.gene013467:intron | 25.0% |
| ! | GTTGTTTATGATTGTAGTAA+AGG | + | chr3.4:85210300-85210319 | None:intergenic | 25.0% |
| ! | TGGAACTTATATAGGATTTA+TGG | - | chr3.4:85210540-85210559 | MS.gene013467:intron | 25.0% |
| ! | TGTTCTTGGATCTATTATAT+GGG | - | chr3.4:85210930-85210949 | MS.gene013467:intron | 25.0% |
| ! | TTAGTGATTAGAATTTCTTG+TGG | - | chr3.4:85211638-85211657 | MS.gene013467:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.4:85210883-85210902 | MS.gene013467:intron | 25.0% |
| !! | GTCTATTTCTTGTCAAAATT+TGG | - | chr3.4:85211583-85211602 | MS.gene013467:CDS | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.4:85210532-85210551 | MS.gene013467:intron | 25.0% |
| !!! | ATTGTTAGTTTTGATGGTTT+TGG | - | chr3.4:85212035-85212054 | MS.gene013467:CDS | 25.0% |
| AGAAAGAAAAGAGGAATTGT+GGG | - | chr3.4:85210892-85210911 | MS.gene013467:intron | 30.0% | |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.4:85210610-85210629 | MS.gene013467:intron | 30.0% | |
| CAAAGAATTATCTAAGCTGT+AGG | - | chr3.4:85211237-85211256 | MS.gene013467:CDS | 30.0% | |
| CTGTTCTTGGATCTATTATA+TGG | - | chr3.4:85210929-85210948 | MS.gene013467:intron | 30.0% | |
| GATTAAACATAAACATGGCA+AGG | - | chr3.4:85210972-85210991 | MS.gene013467:intron | 30.0% | |
| GTTCTTGGATCTATTATATG+GGG | - | chr3.4:85210931-85210950 | MS.gene013467:intron | 30.0% | |
| GTTGAACAATGTGTTCTATT+GGG | - | chr3.4:85210810-85210829 | MS.gene013467:intron | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.4:85210415-85210434 | None:intergenic | 30.0% | |
| TAGAAAGAAAAGAGGAATTG+TGG | - | chr3.4:85210891-85210910 | MS.gene013467:intron | 30.0% | |
| TTAGTGATTAGCATTTCTTG+TGG | - | chr3.4:85211717-85211736 | MS.gene013467:CDS | 30.0% | |
| TTGAACAATGTGTTCTATTG+GGG | - | chr3.4:85210811-85210830 | MS.gene013467:intron | 30.0% | |
| TTGCTCCTTCAAATAACAAT+GGG | - | chr3.4:85212103-85212122 | MS.gene013467:CDS | 30.0% | |
| !! | ACTGATTTTTACACATACAC+AGG | - | chr3.4:85211884-85211903 | MS.gene013467:CDS | 30.0% |
| !! | AGTTTAGTTTGAGAACAAGA+GGG | - | chr3.4:85210788-85210807 | MS.gene013467:intron | 30.0% |
| !!! | ATTCTGGAGTATTTTCAACA+TGG | - | chr3.4:85210444-85210463 | MS.gene013467:intron | 30.0% |
| !!! | GTATTTTTCTTTTGGGTTGT+TGG | - | chr3.4:85211044-85211063 | MS.gene013467:intron | 30.0% |
| !!! | TCCCTTATTGTTAGTTTTGA+TGG | - | chr3.4:85212029-85212048 | MS.gene013467:CDS | 30.0% |
| !!! | TTCTGGAGTATTTTCAACAT+GGG | - | chr3.4:85210445-85210464 | MS.gene013467:intron | 30.0% |
| AGGTACACTGGATTCTATAA+AGG | - | chr3.4:85211904-85211923 | MS.gene013467:CDS | 35.0% | |
| ATAAAGGAATACAGAGTGCA+GGG | - | chr3.4:85211920-85211939 | MS.gene013467:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.4:85210836-85210855 | MS.gene013467:intron | 35.0% | |
| CAGTACTAGTAGTACTTCAA+TGG | + | chr3.4:85211868-85211887 | None:intergenic | 35.0% | |
| GGTTGAACAATGTGTTCTAT+TGG | - | chr3.4:85210809-85210828 | MS.gene013467:intron | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.4:85210416-85210435 | None:intergenic | 35.0% | |
| GTTGCTCCTTCAAATAACAA+TGG | - | chr3.4:85212102-85212121 | MS.gene013467:CDS | 35.0% | |
| TATAAAGGAATACAGAGTGC+AGG | - | chr3.4:85211919-85211938 | MS.gene013467:CDS | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.4:85210607-85210626 | None:intergenic | 35.0% | |
| TGTTTCAGAGTATGGTTTAC+TGG | - | chr3.4:85211073-85211092 | MS.gene013467:intron | 35.0% | |
| TTAGCAACTAGCATTTCTTG+TGG | - | chr3.4:85211799-85211818 | MS.gene013467:CDS | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.4:85210109-85210128 | MS.gene013467:CDS | 35.0% | |
| ! | TTATGGCTTTTATGTCGCTA+GGG | - | chr3.4:85210557-85210576 | MS.gene013467:intron | 35.0% |
| ! | TTTATGGCTTTTATGTCGCT+AGG | - | chr3.4:85210556-85210575 | MS.gene013467:intron | 35.0% |
| !! | AAATTGATTAGCTTGTGAGC+AGG | - | chr3.4:85211330-85211349 | MS.gene013467:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.4:85210852-85210871 | MS.gene013467:intron | 35.0% |
| !! | ACAGACCCATTGTTATTTGA+AGG | + | chr3.4:85212111-85212130 | None:intergenic | 35.0% |
| !! | CAGTTTAGTTTGAGAACAAG+AGG | - | chr3.4:85210787-85210806 | MS.gene013467:intron | 35.0% |
| AAAGAGTTAAGTGAGGTCCA+AGG | + | chr3.4:85210237-85210256 | None:intergenic | 40.0% | |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.4:85210660-85210679 | MS.gene013467:intron | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.4:85210730-85210749 | None:intergenic | 40.0% | |
| ACATAAACATGGCAAGGTCT+TGG | - | chr3.4:85210978-85210997 | MS.gene013467:intron | 40.0% | |
| AGGAATTGTGGGAATTAGTG+TGG | - | chr3.4:85210903-85210922 | MS.gene013467:intron | 40.0% | |
| AGTATGGTTTACTGGTCCAT+TGG | - | chr3.4:85211081-85211100 | MS.gene013467:intron | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.4:85210841-85210860 | MS.gene013467:intron | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.4:85210934-85210953 | MS.gene013467:intron | 40.0% | |
| GAAAGAGAACAATGAGGAAG+AGG | - | chr3.4:85212062-85212081 | MS.gene013467:CDS | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.4:85210835-85210854 | MS.gene013467:intron | 40.0% | |
| GGATGCTATGTTTCAGAGTA+TGG | - | chr3.4:85211065-85211084 | MS.gene013467:intron | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.4:85210108-85210127 | MS.gene013467:CDS | 40.0% | |
| TAAAGGAATACAGAGTGCAG+GGG | - | chr3.4:85211921-85211940 | MS.gene013467:CDS | 40.0% | |
| TAACCATAACGTGTCTCCAA+TGG | - | chr3.4:85211966-85211985 | MS.gene013467:CDS | 40.0% | |
| TACACAACCTTTGCAGTGTT+TGG | - | chr3.4:85210184-85210203 | MS.gene013467:CDS | 40.0% | |
| TAGGATACCAAACACTGCAA+AGG | + | chr3.4:85210194-85210213 | None:intergenic | 40.0% | |
| TATCCACCCATGAATCGTAA+AGG | - | chr3.4:85210406-85210425 | MS.gene013467:intron | 40.0% | |
| TATTATATGGGGTGGTGCAT+TGG | - | chr3.4:85210942-85210961 | MS.gene013467:intron | 40.0% | |
| TCAACTTATGTACTCTACGC+TGG | - | chr3.4:85210268-85210287 | MS.gene013467:CDS | 40.0% | |
| TGCAAAGGTTGTGTAAAGTG+CGG | + | chr3.4:85210179-85210198 | None:intergenic | 40.0% | |
| TTACACATACACAGGTACAC+TGG | - | chr3.4:85211892-85211911 | MS.gene013467:CDS | 40.0% | |
| TTCACTATCAACTGTGCCAT+TGG | + | chr3.4:85211985-85212004 | None:intergenic | 40.0% | |
| TTGACGCATGAGTACCAAAA+TGG | - | chr3.4:85211478-85211497 | MS.gene013467:CDS | 40.0% | |
| TTGAGTCACAGTTGCAGTTA+CGG | - | chr3.4:85211357-85211376 | MS.gene013467:CDS | 40.0% | |
| TTTGCAGTGTTTGGTATCCT+AGG | - | chr3.4:85210193-85210212 | MS.gene013467:CDS | 40.0% | |
| ! | AAAATGGTGGGACCATTTCA+CGG | - | chr3.4:85211494-85211513 | MS.gene013467:CDS | 40.0% |
| ! | ATTAGTGTGGTTGCTGTTCT+TGG | - | chr3.4:85210916-85210935 | MS.gene013467:intron | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.4:85210827-85210846 | MS.gene013467:intron | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.4:85210826-85210845 | MS.gene013467:intron | 40.0% |
| ! | TGGCAAGGTCTTGGATTTTA+AGG | - | chr3.4:85210987-85211006 | MS.gene013467:intron | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.4:85211115-85211134 | MS.gene013467:CDS | 40.0% |
| !! | ATTTTGGTACTCATGCGTCA+AGG | + | chr3.4:85211479-85211498 | None:intergenic | 40.0% |
| !! | CAAGCTTTTGCTATAGTTGC+CGG | - | chr3.4:85210322-85210341 | MS.gene013467:intron | 40.0% |
| !! | GGCACAGTTGATAGTGAATT+GGG | - | chr3.4:85211987-85212006 | MS.gene013467:CDS | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.4:85210994-85211013 | MS.gene013467:intron | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.4:85210448-85210467 | MS.gene013467:intron | 40.0% |
| !! | TGGCACAGTTGATAGTGAAT+TGG | - | chr3.4:85211986-85212005 | MS.gene013467:CDS | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.4:85210457-85210476 | MS.gene013467:intron | 40.0% |
| AATGCTCTTTCAGGAATGGG+TGG | - | chr3.4:85210112-85210131 | MS.gene013467:CDS | 45.0% | |
| ACGCATGAGTACCAAAATGG+TGG | - | chr3.4:85211481-85211500 | MS.gene013467:CDS | 45.0% | |
| AGAGAACAATGAGGAAGAGG+AGG | - | chr3.4:85212065-85212084 | MS.gene013467:CDS | 45.0% | |
| CAAGCTGCTACGGTTAATGA+TGG | - | chr3.4:85210520-85210539 | MS.gene013467:intron | 45.0% | |
| CATCATTAACCGTAGCAGCT+TGG | + | chr3.4:85210522-85210541 | None:intergenic | 45.0% | |
| CATCGGAGCAGGTCTATTAT+GGG | - | chr3.4:85210357-85210376 | MS.gene013467:intron | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+AGG | + | chr3.4:85210244-85210263 | None:intergenic | 45.0% | |
| CGCATGAGTACCAAAATGGT+GGG | - | chr3.4:85211482-85211501 | MS.gene013467:CDS | 45.0% | |
| CGGCAACTATAGCAAAAGCT+TGG | + | chr3.4:85210324-85210343 | None:intergenic | 45.0% | |
| GGCTGTGAAAGAGAACAATG+AGG | - | chr3.4:85212056-85212075 | MS.gene013467:CDS | 45.0% | |
| GGTTGTGTAAAGTGCGGTTA+AGG | + | chr3.4:85210173-85210192 | None:intergenic | 45.0% | |
| GTCATTAGCTAGAGCTCCAA+TGG | + | chr3.4:85211100-85211119 | None:intergenic | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.4:85210412-85210431 | None:intergenic | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.4:85210716-85210735 | MS.gene013467:intron | 45.0% | |
| ! | CACGTGCACTAAAGCTCTAA+CGG | + | chr3.4:85211522-85211541 | None:intergenic | 45.0% |
| ! | CCTCACTTAACTCTTTTCGC+AGG | - | chr3.4:85210241-85210260 | MS.gene013467:CDS | 45.0% |
| ! | GAAGGAGCAACTTGTTTGAC+AGG | + | chr3.4:85212093-85212112 | None:intergenic | 45.0% |
| ! | GTGAAATGGTCCCACCATTT+TGG | + | chr3.4:85211495-85211514 | None:intergenic | 45.0% |
| ! | GTTAGAGCTTTAGTGCACGT+GGG | - | chr3.4:85211521-85211540 | MS.gene013467:CDS | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.4:85210460-85210479 | MS.gene013467:intron | 45.0% |
| !!! | GAGTCTGGTTCTGATTTTGC+TGG | - | chr3.4:85211009-85211028 | MS.gene013467:intron | 45.0% |
| !! | ATTTATTAACAAATAAAAAA+AGG | + | chr3.4:85211551-85211570 | None:intergenic | 5.0% |
| GCAGTGTTTGGTATCCTAGG+TGG | - | chr3.4:85210196-85210215 | MS.gene013467:CDS | 50.0% | |
| GCATCGGAGCAGGTCTATTA+TGG | - | chr3.4:85210356-85210375 | MS.gene013467:intron | 50.0% | |
| GGTGGCATCTACAACATCCT+TGG | - | chr3.4:85210217-85210236 | MS.gene013467:CDS | 50.0% | |
| GTGTTTGGTATCCTAGGTGG+TGG | - | chr3.4:85210199-85210218 | MS.gene013467:CDS | 50.0% | |
| TGTTGTAGATGCCACCACCT+AGG | + | chr3.4:85210213-85210232 | None:intergenic | 50.0% | |
| ! | CGTTAGAGCTTTAGTGCACG+TGG | - | chr3.4:85211520-85211539 | MS.gene013467:CDS | 50.0% |
| ! | GCTCTAACGGATCCGTGAAA+TGG | + | chr3.4:85211509-85211528 | None:intergenic | 50.0% |
| ! | GGTCTATTATGGGCTGCACA+AGG | - | chr3.4:85210367-85210386 | MS.gene013467:intron | 50.0% |
| ! | GTGCCATTGGAGACACGTTA+TGG | + | chr3.4:85211972-85211991 | None:intergenic | 50.0% |
| !! | AAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.4:85210164-85210183 | None:intergenic | 50.0% |
| !! | TGGAAGCAGTTGCGTTGACT+TGG | + | chr3.4:85210144-85210163 | None:intergenic | 50.0% |
| GCTCTTTCAGGAATGGGTGG+TGG | - | chr3.4:85210115-85210134 | MS.gene013467:CDS | 55.0% | |
| TCGTGGTGACCAAGCTGCTA+CGG | - | chr3.4:85210510-85210529 | MS.gene013467:intron | 55.0% | |
| ! | CTTTCAGGAATGGGTGGTGG+TGG | - | chr3.4:85210118-85210137 | MS.gene013467:CDS | 55.0% |
| ACCTGCTCCGATGCCGAGAA+GGG | + | chr3.4:85210350-85210369 | None:intergenic | 60.0% | |
| ATAGTTGCCGGCGCCCTTCT+CGG | - | chr3.4:85210334-85210353 | MS.gene013467:intron | 60.0% | |
| GACCTGCTCCGATGCCGAGA+AGG | + | chr3.4:85210351-85210370 | None:intergenic | 65.0% | |
| GTGCAGGGGCTGCAGTTGCA+TGG | - | chr3.4:85211935-85211954 | MS.gene013467:CDS | 65.0% | |
| ! | GCCCTTCTCGGCATCGGAGC+AGG | - | chr3.4:85210346-85210365 | MS.gene013467:intron | 70.0% |
| ! | TCCGATGCCGAGAAGGGCGC+CGG | + | chr3.4:85210344-85210363 | None:intergenic | 70.0% |
| GCCGGCGCCCTTCTCGGCAT+CGG | - | chr3.4:85210340-85210359 | MS.gene013467:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85210106 | 85212137 | 85210106 | ID=MS.gene013467 |
| chr3.4 | mRNA | 85210106 | 85212137 | 85210106 | ID=MS.gene013467.t1;Parent=MS.gene013467 |
| chr3.4 | exon | 85211107 | 85212137 | 85211107 | ID=MS.gene013467.t1.exon1;Parent=MS.gene013467.t1 |
| chr3.4 | CDS | 85211107 | 85212137 | 85211107 | ID=cds.MS.gene013467.t1;Parent=MS.gene013467.t1 |
| chr3.4 | exon | 85210106 | 85210337 | 85210106 | ID=MS.gene013467.t1.exon2;Parent=MS.gene013467.t1 |
| chr3.4 | CDS | 85210106 | 85210337 | 85210106 | ID=cds.MS.gene013467.t1;Parent=MS.gene013467.t1 |
| Gene Sequence |
| Protein sequence |
