Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06574.t1 | XP_003602430.1 | 98.8 | 432 | 5 | 0 | 1 | 432 | 1 | 432 | 7.10E-247 | 862.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06574.t1 | Q56WD3 | 68.0 | 435 | 132 | 3 | 2 | 432 | 7 | 438 | 8.7e-169 | 594.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06574.t1 | G7J9N9 | 98.8 | 432 | 5 | 0 | 1 | 432 | 1 | 432 | 5.1e-247 | 862.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049444 | MS.gene06574 | 0.827304 | 1.68E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049443 | MS.gene06574 | PPI |
| MS.gene013467 | MS.gene06574 | PPI |
| MS.gene06573 | MS.gene06574 | PPI |
| MS.gene013466 | MS.gene06574 | PPI |
| MS.gene049444 | MS.gene06574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06574.t1 | MTR_3g093270 | 98.065 | 465 | 9 | 0 | 1 | 465 | 1 | 465 | 0.0 | 935 |
| MS.gene06574.t1 | MTR_3g093290 | 93.764 | 449 | 27 | 1 | 2 | 450 | 3 | 450 | 0.0 | 851 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06574.t1 | AT1G18010 | 68.539 | 445 | 133 | 3 | 2 | 442 | 7 | 448 | 0.0 | 626 |
| MS.gene06574.t1 | AT1G18000 | 68.539 | 445 | 133 | 3 | 2 | 442 | 7 | 448 | 0.0 | 626 |
Find 104 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACAAATCATCCTTAT+TGG | 0.166397 | 3.2:-78372628 | MS.gene06574:CDS |
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.2:-78372583 | MS.gene06574:CDS |
| CTGTTCTTGGATCTATTATA+TGG | 0.213344 | 3.2:-78371757 | MS.gene06574:CDS |
| ATTAGTGTGGTTGCTGTTCT+TGG | 0.242665 | 3.2:-78371770 | MS.gene06574:CDS |
| AACCATCAAAACTAACAATA+AGG | 0.245935 | 3.2:+78370652 | None:intergenic |
| TGTTTCAGAGTATGGTTTAC+TGG | 0.260675 | 3.2:-78371613 | MS.gene06574:CDS |
| GCATCGGAGCAGGTCTATTA+TGG | 0.282301 | 3.2:-78372330 | MS.gene06574:CDS |
| GGATGCTATGTTTCAGAGTA+TGG | 0.305991 | 3.2:-78371621 | MS.gene06574:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.312658 | 3.2:-78372154 | MS.gene06574:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.2:-78372229 | MS.gene06574:CDS |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.2:+78372273 | None:intergenic |
| CGGTTGTAATTAAGAATAAA+AGG | 0.319960 | 3.2:+78372196 | None:intergenic |
| GTTGAACAATGTGTTCTATT+GGG | 0.323401 | 3.2:-78371876 | MS.gene06574:CDS |
| TACACAACCTTTGCAGTGTT+TGG | 0.337488 | 3.2:-78372502 | MS.gene06574:CDS |
| TGTTCTTGGATCTATTATAT+GGG | 0.338310 | 3.2:-78371756 | MS.gene06574:CDS |
| TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3.2:-78372146 | MS.gene06574:CDS |
| GGTTGAACAATGTGTTCTAT+TGG | 0.354183 | 3.2:-78371877 | MS.gene06574:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.2:-78371834 | MS.gene06574:CDS |
| ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3.2:-78371708 | MS.gene06574:CDS |
| TGGCACAGTTGATAGTGAAT+TGG | 0.376213 | 3.2:-78370697 | MS.gene06574:CDS |
| TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3.2:-78372000 | MS.gene06574:CDS |
| ATAGTTGCCGGCGCCCTTCT+CGG | 0.399605 | 3.2:-78372352 | MS.gene06574:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.403885 | 3.2:-78372577 | MS.gene06574:CDS |
| GCCCTTCTCGGCATCGGAGC+AGG | 0.411839 | 3.2:-78372340 | MS.gene06574:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.2:-78371851 | MS.gene06574:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.414914 | 3.2:-78371860 | MS.gene06574:CDS |
| AGGTACACTGGATTCTATAA+AGG | 0.416951 | 3.2:-78370779 | MS.gene06574:CDS |
| GTTGTTTATGATTATAGTAA+AGG | 0.424936 | 3.2:+78372389 | None:intergenic |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.2:-78371970 | MS.gene06574:CDS |
| TAGAAAGAAAAGAGGAATTG+TGG | 0.430494 | 3.2:-78371795 | MS.gene06574:CDS |
| TTTGCAGTGTTTGGTATCCT+AGG | 0.434690 | 3.2:-78372493 | MS.gene06574:CDS |
| ACCATCAAAACTAACAATAA+GGG | 0.439660 | 3.2:+78370653 | None:intergenic |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.2:-78371850 | MS.gene06574:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.440838 | 3.2:-78371803 | MS.gene06574:CDS |
| AGAAAGAAAAGAGGAATTGT+GGG | 0.444597 | 3.2:-78371794 | MS.gene06574:CDS |
| GTGCCATTGGAGACACGTTA+TGG | 0.446519 | 3.2:+78370714 | None:intergenic |
| GAAGGAGCAACTTGTTTGAC+AGG | 0.447780 | 3.2:+78370593 | None:intergenic |
| GGCACAGTTGATAGTGAATT+GGG | 0.449830 | 3.2:-78370696 | MS.gene06574:CDS |
| TCAACTGAACATGAAGAATC+AGG | 0.450329 | 3.2:-78372709 | MS.gene06574:CDS |
| GCCGGCGCCCTTCTCGGCAT+CGG | 0.454685 | 3.2:-78372346 | MS.gene06574:CDS |
| CATCGGAGCAGGTCTATTAT+GGG | 0.456390 | 3.2:-78372329 | MS.gene06574:CDS |
| TTCACTATCAACTGTGCCAT+TGG | 0.456806 | 3.2:+78370701 | None:intergenic |
| ACAGGCCCATTGTTATTTGA+AGG | 0.460439 | 3.2:+78370575 | None:intergenic |
| GGTTGTGTAAAGTGCGGTTA+AGG | 0.466041 | 3.2:+78372516 | None:intergenic |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.2:-78372076 | MS.gene06574:CDS |
| TATTATATGGGGTGGTGCAT+TGG | 0.473668 | 3.2:-78371744 | MS.gene06574:CDS |
| GAGGTGAATTGTATCTGAAA+AGG | 0.477765 | 3.2:+78372650 | None:intergenic |
| CTTTCAGGAATGGGAGGTGG+TGG | 0.494644 | 3.2:-78372568 | MS.gene06574:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.2:-78371845 | MS.gene06574:CDS |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.495365 | 3.2:-78372578 | MS.gene06574:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.2:-78372226 | MS.gene06574:CDS |
| GAAAGAGCATTGAACATGCC+TGG | 0.498347 | 3.2:+78372586 | None:intergenic |
| TCCGATGCCGAGAAGGGCGC+CGG | 0.500028 | 3.2:+78372345 | None:intergenic |
| AAGTGCGGTTAAGGCGTTGT+TGG | 0.502056 | 3.2:+78372525 | None:intergenic |
| ATAAGGATGATTTGTGAAAG+AGG | 0.505507 | 3.2:+78372631 | None:intergenic |
| TTGCTCCTTCAAATAACAAT+GGG | 0.507627 | 3.2:-78370580 | MS.gene06574:CDS |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.2:+78372274 | None:intergenic |
| TATAAAGGAATACAGAGTGC+AGG | 0.516636 | 3.2:-78370764 | MS.gene06574:CDS |
| CGGCAACTATAGCAAAAGCT+TGG | 0.518114 | 3.2:+78372365 | None:intergenic |
| AGTATGGTTTACTGGTCCAT+TGG | 0.520928 | 3.2:-78371605 | MS.gene06574:CDS |
| GAAAGAGAACAATGAGGAAG+AGG | 0.525286 | 3.2:-78370621 | MS.gene06574:CDS |
| CAAGCTGCTACGGTTAATGA+TGG | 0.526016 | 3.2:-78372166 | MS.gene06574:CDS |
| TACTAGCATAGTCAATGGAC+AGG | 0.536545 | 3.2:+78370557 | None:intergenic |
| GTCATTAGCTAGAGCTCCAA+TGG | 0.537931 | 3.2:+78371589 | None:intergenic |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.2:-78371571 | MS.gene06574:intron |
| GTGCAGGGGCTGCAGTTGCA+TGG | 0.546926 | 3.2:-78370748 | MS.gene06574:CDS |
| ACCTGCTCCGATGCCGAGAA+GGG | 0.549963 | 3.2:+78372339 | None:intergenic |
| CCGTGGTGATCAAGCTGCTA+CGG | 0.550707 | 3.2:-78372176 | MS.gene06574:CDS |
| TATCCACCCATGAATCGTAA+AGG | 0.557634 | 3.2:-78372280 | MS.gene06574:CDS |
| CAATTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.2:-78371899 | MS.gene06574:CDS |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.2:+78372082 | None:intergenic |
| GACCTGCTCCGATGCCGAGA+AGG | 0.561229 | 3.2:+78372338 | None:intergenic |
| ATAAAGGAATACAGAGTGCA+GGG | 0.563470 | 3.2:-78370763 | MS.gene06574:CDS |
| TTGAACAATGTGTTCTATTG+GGG | 0.569076 | 3.2:-78371875 | MS.gene06574:CDS |
| TTACACATACACAGGTACAC+TGG | 0.578312 | 3.2:-78370791 | MS.gene06574:intron |
| GTTCTTGGATCTATTATATG+GGG | 0.579371 | 3.2:-78371755 | MS.gene06574:CDS |
| GCTCTTTCAGGAATGGGAGG+TGG | 0.583306 | 3.2:-78372571 | MS.gene06574:CDS |
| CTTGGATCTATTATATGGGG+TGG | 0.589106 | 3.2:-78371752 | MS.gene06574:CDS |
| GTTGCTCCTTCAAATAACAA+TGG | 0.590508 | 3.2:-78370581 | MS.gene06574:CDS |
| AGAGAACAATGAGGAAGAGG+AGG | 0.591963 | 3.2:-78370618 | MS.gene06574:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.2:+78371959 | None:intergenic |
| GATTAAACATAAACATGGCA+AGG | 0.600741 | 3.2:-78371714 | MS.gene06574:CDS |
| TTTATTCTTAATTACAACCG+TGG | 0.604418 | 3.2:-78372193 | MS.gene06574:CDS |
| ATTGGGGAGCACAAATGATA+GGG | 0.606614 | 3.2:-78371859 | MS.gene06574:CDS |
| TCAACTTATGTACTCTACGC+TGG | 0.608201 | 3.2:-78372418 | MS.gene06574:CDS |
| GGTGGCATCTACAACATCCT+CGG | 0.616298 | 3.2:-78372469 | MS.gene06574:CDS |
| GTGTTTGGTATCCTAGGTGG+TGG | 0.616607 | 3.2:-78372487 | MS.gene06574:CDS |
| TAACCATAACGTGTCTCCAA+TGG | 0.617946 | 3.2:-78370717 | MS.gene06574:CDS |
| AGGAATTGTGGGAATTAGTG+TGG | 0.626228 | 3.2:-78371783 | MS.gene06574:CDS |
| GTTCCTTTACGATTCATGGG+TGG | 0.628209 | 3.2:+78372277 | None:intergenic |
| TGTTGTAGATGCCACCACCT+AGG | 0.637389 | 3.2:+78372476 | None:intergenic |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.2:-78372026 | MS.gene06574:CDS |
| AATGCTCTTTCAGGAATGGG+AGG | 0.638536 | 3.2:-78372574 | MS.gene06574:CDS |
| GGTCTATTATGGGCTGCACA+AGG | 0.640527 | 3.2:-78372319 | MS.gene06574:CDS |
| TAGGATACCAAACACTGCAA+AGG | 0.650625 | 3.2:+78372495 | None:intergenic |
| GCAGTGTTTGGTATCCTAGG+TGG | 0.651404 | 3.2:-78372490 | MS.gene06574:CDS |
| AATTTAGTTTGAGAACAAGA+GGG | 0.657205 | 3.2:-78371898 | MS.gene06574:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.664350 | 3.2:-78371719 | MS.gene06574:CDS |
| GGCTGTGAAAGAGAACAATG+AGG | 0.665070 | 3.2:-78370627 | MS.gene06574:CDS |
| TGCAAAGGTTGTGTAAAGTG+CGG | 0.675637 | 3.2:+78372510 | None:intergenic |
| CCGTAGCAGCTTGATCACCA+CGG | 0.690669 | 3.2:+78372176 | None:intergenic |
| TAAAGGAATACAGAGTGCAG+GGG | 0.705125 | 3.2:-78370762 | MS.gene06574:CDS |
| CCTGCGAAAAGAGTTAAGTG+AGG | 0.734855 | 3.2:+78372445 | None:intergenic |
| AAAGAGTTAAGTGAGGTCCG+AGG | 0.738397 | 3.2:+78372452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATGATATATGAAATT+TGG | - | chr3.2:78372436-78372455 | MS.gene06574:CDS | 10.0% |
| !! | AAAGAAAAATACAAAACAAA+AGG | + | chr3.2:78371633-78371652 | None:intergenic | 15.0% |
| !! | AGTTAAAAATATATTTCAAG+TGG | + | chr3.2:78371885-78371904 | None:intergenic | 15.0% |
| !!! | GTTAATAAATATTTAGAGTA+GGG | - | chr3.2:78372158-78372177 | MS.gene06574:CDS | 15.0% |
| !!! | TGTTAATAAATATTTAGAGT+AGG | - | chr3.2:78372157-78372176 | MS.gene06574:CDS | 15.0% |
| !!! | TTAGTATTTGTTAACAAAAA+GGG | - | chr3.2:78372047-78372066 | MS.gene06574:CDS | 15.0% |
| !!! | TTGTTTTGTATTTTTCTTTT+GGG | - | chr3.2:78371634-78371653 | MS.gene06574:CDS | 15.0% |
| !!! | TTTAGTATTTGTTAACAAAA+AGG | - | chr3.2:78372046-78372065 | MS.gene06574:CDS | 15.0% |
| !!! | TTTGTTTTGTATTTTTCTTT+TGG | - | chr3.2:78371633-78371652 | MS.gene06574:CDS | 15.0% |
| !! | AAAAAGTAACTCAAAACAAA+TGG | + | chr3.2:78371798-78371817 | None:intergenic | 20.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.2:78371564-78371583 | MS.gene06574:intron | 20.0% |
| !! | CTAAAAATACAAATTAGTGT+TGG | + | chr3.2:78372383-78372402 | None:intergenic | 20.0% |
| !! | GTATGATAATAGTTGAAATT+TGG | - | chr3.2:78372259-78372278 | MS.gene06574:CDS | 20.0% |
| !! | GTTGTTTATGATTATAGTAA+AGG | + | chr3.2:78370897-78370916 | None:intergenic | 20.0% |
| !! | TTCTTAAATTGTTCTACAAT+TGG | - | chr3.2:78371283-78371302 | MS.gene06574:intron | 20.0% |
| !!! | GAACTTACATTTCAATTTTT+TGG | - | chr3.2:78371025-78371044 | MS.gene06574:intron | 20.0% |
| !!! | TGATGATGATAATTGAAATT+TGG | - | chr3.2:78372344-78372363 | MS.gene06574:CDS | 20.0% |
| ! | AAAAACAAACTAAGCCAATA+AGG | + | chr3.2:78370672-78370691 | None:intergenic | 25.0% |
| ! | AACCATCAAAACTAACAATA+AGG | + | chr3.2:78372634-78372653 | None:intergenic | 25.0% |
| ! | ACCATCAAAACTAACAATAA+GGG | + | chr3.2:78372633-78372652 | None:intergenic | 25.0% |
| ! | CGGTTGTAATTAAGAATAAA+AGG | + | chr3.2:78371090-78371109 | None:intergenic | 25.0% |
| ! | TGTTCTTGGATCTATTATAT+GGG | - | chr3.2:78371527-78371546 | MS.gene06574:intron | 25.0% |
| ! | TTAGTGATTAGAATTTCTTG+TGG | - | chr3.2:78372235-78372254 | MS.gene06574:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.2:78371480-78371499 | MS.gene06574:intron | 25.0% |
| ! | TTTATTCTTAATTACAACCG+TGG | - | chr3.2:78371090-78371109 | MS.gene06574:intron | 25.0% |
| !! | GTCTATTTCTTGTCAAAATT+TGG | - | chr3.2:78372180-78372199 | MS.gene06574:CDS | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.2:78371129-78371148 | MS.gene06574:intron | 25.0% |
| !!! | AATTTAGTTTGAGAACAAGA+GGG | - | chr3.2:78371385-78371404 | MS.gene06574:intron | 25.0% |
| !!! | ATTGTTAGTTTTGATGGTTT+TGG | - | chr3.2:78372635-78372654 | MS.gene06574:CDS | 25.0% |
| !!! | TTTTGGAGTATTTTCAACAT+GGG | - | chr3.2:78371042-78371061 | MS.gene06574:intron | 25.0% |
| !!! | TTTTTGGAGTATTTTCAACA+TGG | - | chr3.2:78371041-78371060 | MS.gene06574:intron | 25.0% |
| AGAAAGAAAAGAGGAATTGT+GGG | - | chr3.2:78371489-78371508 | MS.gene06574:intron | 30.0% | |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.2:78371207-78371226 | MS.gene06574:intron | 30.0% | |
| CAAAGAATTATCTAAGCTGT+AGG | - | chr3.2:78371834-78371853 | MS.gene06574:CDS | 30.0% | |
| CTGTTCTTGGATCTATTATA+TGG | - | chr3.2:78371526-78371545 | MS.gene06574:intron | 30.0% | |
| CTTTCACAAATCATCCTTAT+TGG | - | chr3.2:78370655-78370674 | MS.gene06574:CDS | 30.0% | |
| GATTAAACATAAACATGGCA+AGG | - | chr3.2:78371569-78371588 | MS.gene06574:intron | 30.0% | |
| GTTCTTGGATCTATTATATG+GGG | - | chr3.2:78371528-78371547 | MS.gene06574:intron | 30.0% | |
| GTTGAACAATGTGTTCTATT+GGG | - | chr3.2:78371407-78371426 | MS.gene06574:intron | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.2:78371012-78371031 | None:intergenic | 30.0% | |
| TAGAAAGAAAAGAGGAATTG+TGG | - | chr3.2:78371488-78371507 | MS.gene06574:intron | 30.0% | |
| TGGAACTTATATAGGTTTCA+TGG | - | chr3.2:78371137-78371156 | MS.gene06574:intron | 30.0% | |
| TTAGTGATTAGCATTTCTTG+TGG | - | chr3.2:78372317-78372336 | MS.gene06574:CDS | 30.0% | |
| TTGAACAATGTGTTCTATTG+GGG | - | chr3.2:78371408-78371427 | MS.gene06574:intron | 30.0% | |
| TTGCTCCTTCAAATAACAAT+GGG | - | chr3.2:78372703-78372722 | MS.gene06574:CDS | 30.0% | |
| ! | ATAAGGATGATTTGTGAAAG+AGG | + | chr3.2:78370655-78370674 | None:intergenic | 30.0% |
| !! | ACTGATTTTTACACATACAC+AGG | - | chr3.2:78372484-78372503 | MS.gene06574:CDS | 30.0% |
| !! | CAATTTAGTTTGAGAACAAG+AGG | - | chr3.2:78371384-78371403 | MS.gene06574:intron | 30.0% |
| !!! | GATGAAGTTTTTGTTGTTTC+TGG | + | chr3.2:78370610-78370629 | None:intergenic | 30.0% |
| !!! | GTATTTTTCTTTTGGGTTGT+TGG | - | chr3.2:78371641-78371660 | MS.gene06574:CDS | 30.0% |
| !!! | TCCCTTATTGTTAGTTTTGA+TGG | - | chr3.2:78372629-78372648 | MS.gene06574:CDS | 30.0% |
| !!! | TTAGTTTGTTTTTGTTGTCC+AGG | - | chr3.2:78370679-78370698 | MS.gene06574:CDS | 30.0% |
| AGGTACACTGGATTCTATAA+AGG | - | chr3.2:78372504-78372523 | MS.gene06574:CDS | 35.0% | |
| ATAAAGGAATACAGAGTGCA+GGG | - | chr3.2:78372520-78372539 | MS.gene06574:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.2:78371433-78371452 | MS.gene06574:intron | 35.0% | |
| CAGTACTAGTAGTACTTCAA+TGG | + | chr3.2:78372468-78372487 | None:intergenic | 35.0% | |
| GAGGTGAATTGTATCTGAAA+AGG | + | chr3.2:78370636-78370655 | None:intergenic | 35.0% | |
| GGTTGAACAATGTGTTCTAT+TGG | - | chr3.2:78371406-78371425 | MS.gene06574:intron | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.2:78371013-78371032 | None:intergenic | 35.0% | |
| GTTGCTCCTTCAAATAACAA+TGG | - | chr3.2:78372702-78372721 | MS.gene06574:CDS | 35.0% | |
| TATAAAGGAATACAGAGTGC+AGG | - | chr3.2:78372519-78372538 | MS.gene06574:CDS | 35.0% | |
| TCAACTGAACATGAAGAATC+AGG | - | chr3.2:78370574-78370593 | MS.gene06574:CDS | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.2:78371204-78371223 | None:intergenic | 35.0% | |
| TGTTTCAGAGTATGGTTTAC+TGG | - | chr3.2:78371670-78371689 | MS.gene06574:CDS | 35.0% | |
| TTAGCAACTAGCATTTCTTG+TGG | - | chr3.2:78372399-78372418 | MS.gene06574:CDS | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.2:78370706-78370725 | MS.gene06574:CDS | 35.0% | |
| ! | TCATGGCTTTTATGTCACTA+GGG | - | chr3.2:78371154-78371173 | MS.gene06574:intron | 35.0% |
| ! | TTCATGGCTTTTATGTCACT+AGG | - | chr3.2:78371153-78371172 | MS.gene06574:intron | 35.0% |
| !! | AAATTGATTAGCTTGTGAGC+AGG | - | chr3.2:78371927-78371946 | MS.gene06574:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.2:78371449-78371468 | MS.gene06574:intron | 35.0% |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.2:78371257-78371276 | MS.gene06574:intron | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.2:78371327-78371346 | None:intergenic | 40.0% | |
| ACATAAACATGGCAAGGTCT+TGG | - | chr3.2:78371575-78371594 | MS.gene06574:CDS | 40.0% | |
| AGGAATTGTGGGAATTAGTG+TGG | - | chr3.2:78371500-78371519 | MS.gene06574:intron | 40.0% | |
| AGTATGGTTTACTGGTCCAT+TGG | - | chr3.2:78371678-78371697 | MS.gene06574:CDS | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.2:78371438-78371457 | MS.gene06574:intron | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.2:78371531-78371550 | MS.gene06574:intron | 40.0% | |
| GAAAGAGAACAATGAGGAAG+AGG | - | chr3.2:78372662-78372681 | MS.gene06574:CDS | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.2:78371432-78371451 | MS.gene06574:intron | 40.0% | |
| GGATGCTATGTTTCAGAGTA+TGG | - | chr3.2:78371662-78371681 | MS.gene06574:CDS | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.2:78370705-78370724 | MS.gene06574:CDS | 40.0% | |
| TAAAGGAATACAGAGTGCAG+GGG | - | chr3.2:78372521-78372540 | MS.gene06574:CDS | 40.0% | |
| TAACCATAACGTGTCTCCAA+TGG | - | chr3.2:78372566-78372585 | MS.gene06574:CDS | 40.0% | |
| TACACAACCTTTGCAGTGTT+TGG | - | chr3.2:78370781-78370800 | MS.gene06574:intron | 40.0% | |
| TAGGATACCAAACACTGCAA+AGG | + | chr3.2:78370791-78370810 | None:intergenic | 40.0% | |
| TATCCACCCATGAATCGTAA+AGG | - | chr3.2:78371003-78371022 | MS.gene06574:intron | 40.0% | |
| TATTATATGGGGTGGTGCAT+TGG | - | chr3.2:78371539-78371558 | MS.gene06574:intron | 40.0% | |
| TCAACTTATGTACTCTACGC+TGG | - | chr3.2:78370865-78370884 | MS.gene06574:intron | 40.0% | |
| TGCAAAGGTTGTGTAAAGTG+CGG | + | chr3.2:78370776-78370795 | None:intergenic | 40.0% | |
| TTACACATACACAGGTACAC+TGG | - | chr3.2:78372492-78372511 | MS.gene06574:CDS | 40.0% | |
| TTCACTATCAACTGTGCCAT+TGG | + | chr3.2:78372585-78372604 | None:intergenic | 40.0% | |
| TTGACGCATGAGTACCAAAA+TGG | - | chr3.2:78372075-78372094 | MS.gene06574:CDS | 40.0% | |
| TTGAGTCACAGTTGCAGTTA+CGG | - | chr3.2:78371954-78371973 | MS.gene06574:CDS | 40.0% | |
| TTTGCAGTGTTTGGTATCCT+AGG | - | chr3.2:78370790-78370809 | MS.gene06574:intron | 40.0% | |
| ! | AAAATGGTGGGACCATTTCA+CGG | - | chr3.2:78372091-78372110 | MS.gene06574:CDS | 40.0% |
| ! | ATTAGTGTGGTTGCTGTTCT+TGG | - | chr3.2:78371513-78371532 | MS.gene06574:intron | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.2:78371424-78371443 | MS.gene06574:intron | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.2:78371423-78371442 | MS.gene06574:intron | 40.0% |
| ! | TGGCAAGGTCTTGGATTTTA+AGG | - | chr3.2:78371584-78371603 | MS.gene06574:CDS | 40.0% |
| !! | ACAGGCCCATTGTTATTTGA+AGG | + | chr3.2:78372711-78372730 | None:intergenic | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.2:78371712-78371731 | MS.gene06574:CDS | 40.0% |
| !! | ATTTTGGTACTCATGCGTCA+AGG | + | chr3.2:78372076-78372095 | None:intergenic | 40.0% |
| !! | CAAGCTTTTGCTATAGTTGC+CGG | - | chr3.2:78370919-78370938 | MS.gene06574:intron | 40.0% |
| !! | GGCACAGTTGATAGTGAATT+GGG | - | chr3.2:78372587-78372606 | MS.gene06574:CDS | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.2:78371591-78371610 | MS.gene06574:CDS | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.2:78371045-78371064 | MS.gene06574:intron | 40.0% |
| !! | TGGCACAGTTGATAGTGAAT+TGG | - | chr3.2:78372586-78372605 | MS.gene06574:CDS | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.2:78371054-78371073 | MS.gene06574:intron | 40.0% |
| AAAGAGTTAAGTGAGGTCCG+AGG | + | chr3.2:78370834-78370853 | None:intergenic | 45.0% | |
| AATGCTCTTTCAGGAATGGG+AGG | - | chr3.2:78370709-78370728 | MS.gene06574:CDS | 45.0% | |
| ACGCATGAGTACCAAAATGG+TGG | - | chr3.2:78372078-78372097 | MS.gene06574:CDS | 45.0% | |
| AGAGAACAATGAGGAAGAGG+AGG | - | chr3.2:78372665-78372684 | MS.gene06574:CDS | 45.0% | |
| CAAGCTGCTACGGTTAATGA+TGG | - | chr3.2:78371117-78371136 | MS.gene06574:intron | 45.0% | |
| CATCGGAGCAGGTCTATTAT+GGG | - | chr3.2:78370954-78370973 | MS.gene06574:intron | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+AGG | + | chr3.2:78370841-78370860 | None:intergenic | 45.0% | |
| CGCATGAGTACCAAAATGGT+GGG | - | chr3.2:78372079-78372098 | MS.gene06574:CDS | 45.0% | |
| CGGCAACTATAGCAAAAGCT+TGG | + | chr3.2:78370921-78370940 | None:intergenic | 45.0% | |
| GGCATGTTCAATGCTCTTTC+AGG | - | chr3.2:78370700-78370719 | MS.gene06574:CDS | 45.0% | |
| GGCTGTGAAAGAGAACAATG+AGG | - | chr3.2:78372656-78372675 | MS.gene06574:CDS | 45.0% | |
| GGTTGTGTAAAGTGCGGTTA+AGG | + | chr3.2:78370770-78370789 | None:intergenic | 45.0% | |
| GTCATTAGCTAGAGCTCCAA+TGG | + | chr3.2:78371697-78371716 | None:intergenic | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.2:78371009-78371028 | None:intergenic | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.2:78371313-78371332 | MS.gene06574:intron | 45.0% | |
| ! | CACGTGCACTAAAGCTCTAA+CGG | + | chr3.2:78372119-78372138 | None:intergenic | 45.0% |
| ! | CCTCACTTAACTCTTTTCGC+AGG | - | chr3.2:78370838-78370857 | MS.gene06574:intron | 45.0% |
| ! | GAAGGAGCAACTTGTTTGAC+AGG | + | chr3.2:78372693-78372712 | None:intergenic | 45.0% |
| ! | GTGAAATGGTCCCACCATTT+TGG | + | chr3.2:78372092-78372111 | None:intergenic | 45.0% |
| ! | GTTAGAGCTTTAGTGCACGT+GGG | - | chr3.2:78372118-78372137 | MS.gene06574:CDS | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.2:78371057-78371076 | MS.gene06574:intron | 45.0% |
| !! | GAAAGAGCATTGAACATGCC+TGG | + | chr3.2:78370700-78370719 | None:intergenic | 45.0% |
| !!! | GAGTCTGGTTCTGATTTTGC+TGG | - | chr3.2:78371606-78371625 | MS.gene06574:CDS | 45.0% |
| !! | ATTTATTAACAAATAAAAAA+AGG | + | chr3.2:78372148-78372167 | None:intergenic | 5.0% |
| GCAGTGTTTGGTATCCTAGG+TGG | - | chr3.2:78370793-78370812 | MS.gene06574:intron | 50.0% | |
| GCATCGGAGCAGGTCTATTA+TGG | - | chr3.2:78370953-78370972 | MS.gene06574:intron | 50.0% | |
| GGTGGCATCTACAACATCCT+CGG | - | chr3.2:78370814-78370833 | MS.gene06574:intron | 50.0% | |
| GTGTTTGGTATCCTAGGTGG+TGG | - | chr3.2:78370796-78370815 | MS.gene06574:intron | 50.0% | |
| TGTTGTAGATGCCACCACCT+AGG | + | chr3.2:78370810-78370829 | None:intergenic | 50.0% | |
| ! | CGTTAGAGCTTTAGTGCACG+TGG | - | chr3.2:78372117-78372136 | MS.gene06574:CDS | 50.0% |
| ! | GCTCTAACGGATCCGTGAAA+TGG | + | chr3.2:78372106-78372125 | None:intergenic | 50.0% |
| ! | GGTCTATTATGGGCTGCACA+AGG | - | chr3.2:78370964-78370983 | MS.gene06574:intron | 50.0% |
| ! | GTGCCATTGGAGACACGTTA+TGG | + | chr3.2:78372572-78372591 | None:intergenic | 50.0% |
| !! | AAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.2:78370761-78370780 | None:intergenic | 50.0% |
| CCGTAGCAGCTTGATCACCA+CGG | + | chr3.2:78371110-78371129 | None:intergenic | 55.0% | |
| CCGTGGTGATCAAGCTGCTA+CGG | - | chr3.2:78371107-78371126 | MS.gene06574:intron | 55.0% | |
| CTTTCAGGAATGGGAGGTGG+TGG | - | chr3.2:78370715-78370734 | MS.gene06574:CDS | 55.0% | |
| GCTCTTTCAGGAATGGGAGG+TGG | - | chr3.2:78370712-78370731 | MS.gene06574:CDS | 55.0% | |
| ACCTGCTCCGATGCCGAGAA+GGG | + | chr3.2:78370947-78370966 | None:intergenic | 60.0% | |
| ATAGTTGCCGGCGCCCTTCT+CGG | - | chr3.2:78370931-78370950 | MS.gene06574:intron | 60.0% | |
| GACCTGCTCCGATGCCGAGA+AGG | + | chr3.2:78370948-78370967 | None:intergenic | 65.0% | |
| GTGCAGGGGCTGCAGTTGCA+TGG | - | chr3.2:78372535-78372554 | MS.gene06574:CDS | 65.0% | |
| ! | GCCCTTCTCGGCATCGGAGC+AGG | - | chr3.2:78370943-78370962 | MS.gene06574:intron | 70.0% |
| ! | TCCGATGCCGAGAAGGGCGC+CGG | + | chr3.2:78370941-78370960 | None:intergenic | 70.0% |
| GCCGGCGCCCTTCTCGGCAT+CGG | - | chr3.2:78370937-78370956 | MS.gene06574:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78370568 | 78372737 | 78370568 | ID=MS.gene06574 |
| chr3.2 | mRNA | 78370568 | 78372737 | 78370568 | ID=MS.gene06574.t1;Parent=MS.gene06574 |
| chr3.2 | exon | 78371572 | 78372737 | 78371572 | ID=MS.gene06574.t1.exon1;Parent=MS.gene06574.t1 |
| chr3.2 | CDS | 78371572 | 78372737 | 78371572 | ID=cds.MS.gene06574.t1;Parent=MS.gene06574.t1 |
| chr3.2 | exon | 78370568 | 78370799 | 78370568 | ID=MS.gene06574.t1.exon2;Parent=MS.gene06574.t1 |
| chr3.2 | CDS | 78370568 | 78370799 | 78370568 | ID=cds.MS.gene06574.t1;Parent=MS.gene06574.t1 |
| Gene Sequence |
| Protein sequence |
