Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049444.t1 | XP_003602430.1 | 88.3 | 419 | 20 | 1 | 1 | 390 | 46 | 464 | 5.10E-206 | 726.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049444.t1 | Q56WD3 | 64.5 | 392 | 105 | 2 | 1 | 359 | 49 | 439 | 1.2e-139 | 497.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049444.t1 | G7J9N9 | 88.3 | 419 | 20 | 1 | 1 | 390 | 46 | 464 | 3.7e-206 | 726.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049444 | MS.gene06574 | 0.827304 | 1.68E-54 | -1.69E-46 |
| MS.gene049444 | MS.gene068127 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene049444 | MS.gene27501 | 0.830047 | 3.66E-55 | -1.69E-46 |
| MS.gene049444 | MS.gene92764 | 0.82688 | 2.13E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049443 | MS.gene049444 | PPI |
| MS.gene06573 | MS.gene049444 | PPI |
| MS.gene013466 | MS.gene049444 | PPI |
| MS.gene049444 | MS.gene06574 | PPI |
| MS.gene049444 | MS.gene013467 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049444.t1 | MTR_3g093270 | 91.429 | 420 | 7 | 1 | 1 | 391 | 46 | 465 | 0.0 | 769 |
| MS.gene049444.t1 | MTR_3g093290 | 87.901 | 405 | 20 | 1 | 1 | 376 | 46 | 450 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049444.t1 | AT1G18010 | 65.087 | 401 | 106 | 2 | 1 | 368 | 49 | 448 | 0.0 | 523 |
| MS.gene049444.t1 | AT1G18000 | 65.087 | 401 | 106 | 2 | 1 | 368 | 49 | 448 | 0.0 | 523 |
Find 96 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.3:-77756030 | MS.gene049444:CDS |
| AACCATCAAAACTAACAATA+AGG | 0.245935 | 3.3:+77754098 | None:intergenic |
| ATTAGTGTGGTTGCTATTCT+TGG | 0.268061 | 3.3:-77755217 | MS.gene049444:CDS |
| CTATTCTTGGATCTATTATA+TGG | 0.272979 | 3.3:-77755204 | MS.gene049444:CDS |
| GCATCGGAGCAGGTCTATTA+TGG | 0.282301 | 3.3:-77755777 | MS.gene049444:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.312658 | 3.3:-77755601 | MS.gene049444:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.3:-77755676 | MS.gene049444:CDS |
| AGTATGGTTTATTGGTCTAT+TGG | 0.314079 | 3.3:-77755052 | MS.gene049444:CDS |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.3:+77755720 | None:intergenic |
| GTTGAACAATGTGTTCTATT+GGG | 0.323401 | 3.3:-77755323 | MS.gene049444:CDS |
| TGTTTCAGAGTATGGTTTAT+TGG | 0.332800 | 3.3:-77755060 | MS.gene049444:intron |
| TACACAACCTTTGCAGTGTT+TGG | 0.337488 | 3.3:-77755949 | MS.gene049444:CDS |
| TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3.3:-77755593 | MS.gene049444:CDS |
| GGTTGAACAATGTGTTCTAT+TGG | 0.354183 | 3.3:-77755324 | MS.gene049444:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.3:-77755281 | MS.gene049444:CDS |
| ACGGTTGTAATTAAGAATAA+AGG | 0.366335 | 3.3:+77755642 | None:intergenic |
| TATTCTTGGATCTATTATAT+GGG | 0.375257 | 3.3:-77755203 | MS.gene049444:CDS |
| TGGCACAGTTGATAGTGAAT+TGG | 0.376213 | 3.3:-77754143 | MS.gene049444:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.378192 | 3.3:-77755250 | MS.gene049444:CDS |
| TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3.3:-77755447 | MS.gene049444:CDS |
| TATTATATGGGGTGGTGCAC+TGG | 0.396545 | 3.3:-77755191 | MS.gene049444:CDS |
| ATAGTTGCCGGCGCCCTTCT+CGG | 0.399605 | 3.3:-77755799 | MS.gene049444:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.403885 | 3.3:-77756024 | MS.gene049444:CDS |
| GCCCTTCTCGGCATCGGAGC+AGG | 0.411839 | 3.3:-77755787 | MS.gene049444:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.3:-77755298 | MS.gene049444:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.414914 | 3.3:-77755307 | MS.gene049444:CDS |
| AGGTACACTGGATTCTATAA+AGG | 0.416951 | 3.3:-77754225 | MS.gene049444:CDS |
| GTTGTTTATGATTATAGTAA+AGG | 0.424936 | 3.3:+77755836 | None:intergenic |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.3:-77755417 | MS.gene049444:CDS |
| TTTGCAGTGTTTGGTATCCT+AGG | 0.434690 | 3.3:-77755940 | MS.gene049444:CDS |
| ACCATCAAAACTAACAATAA+GGG | 0.439660 | 3.3:+77754099 | None:intergenic |
| TAGAAAGAAAAGAGGGATTG+TGG | 0.440451 | 3.3:-77755242 | MS.gene049444:CDS |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.3:-77755297 | MS.gene049444:CDS |
| AGAAAGAAAAGAGGGATTGT+GGG | 0.444597 | 3.3:-77755241 | MS.gene049444:CDS |
| CGGTTGTAATTAAGAATAAA+GGG | 0.445614 | 3.3:+77755643 | None:intergenic |
| GTGCCATTGGAGACACGTTA+TGG | 0.446519 | 3.3:+77754160 | None:intergenic |
| GGCACAGTTGATAGTGAATT+GGG | 0.449830 | 3.3:-77754142 | MS.gene049444:CDS |
| TTAAGAGTAGAAAGAAAAGA+GGG | 0.452339 | 3.3:-77755249 | MS.gene049444:CDS |
| GCCGGCGCCCTTCTCGGCAT+CGG | 0.454685 | 3.3:-77755793 | MS.gene049444:CDS |
| CATCGGAGCAGGTCTATTAT+GGG | 0.456390 | 3.3:-77755776 | MS.gene049444:CDS |
| TTCACTATCAACTGTGCCAT+TGG | 0.456806 | 3.3:+77754147 | None:intergenic |
| GGTTGTGTAAAGTGCGGTTA+AGG | 0.466041 | 3.3:+77755963 | None:intergenic |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.3:-77755523 | MS.gene049444:CDS |
| TATAAAGGAATACAAAGTGC+AGG | 0.485329 | 3.3:-77754210 | MS.gene049444:CDS |
| GAAGGAGCAACATGCTTGAC+AGG | 0.493201 | 3.3:+77754039 | None:intergenic |
| CTTTCAGGAATGGGAGGTGG+TGG | 0.494644 | 3.3:-77756015 | MS.gene049444:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.3:-77755292 | MS.gene049444:CDS |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.495365 | 3.3:-77756025 | MS.gene049444:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.3:-77755673 | MS.gene049444:CDS |
| TCCGATGCCGAGAAGGGCGC+CGG | 0.500028 | 3.3:+77755792 | None:intergenic |
| AAGTGCGGTTAAGGCGTTGT+TGG | 0.502056 | 3.3:+77755972 | None:intergenic |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.3:+77755721 | None:intergenic |
| CGGCAACTATAGCAAAAGCT+TGG | 0.518114 | 3.3:+77755812 | None:intergenic |
| CAAGCTGCTACGGTTAATGA+TGG | 0.526016 | 3.3:-77755613 | MS.gene049444:CDS |
| CTTGGATCTATTATATGGGG+TGG | 0.527962 | 3.3:-77755199 | MS.gene049444:CDS |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.3:-77755018 | MS.gene049444:intron |
| ACCTGCTCCGATGCCGAGAA+GGG | 0.549963 | 3.3:+77755786 | None:intergenic |
| CCGTGGTGATCAAGCTGCTA+CGG | 0.550707 | 3.3:-77755623 | MS.gene049444:CDS |
| ATTCTTGGATCTATTATATG+GGG | 0.555375 | 3.3:-77755202 | MS.gene049444:CDS |
| TATCCACCCATGAATCGTAA+AGG | 0.557634 | 3.3:-77755727 | MS.gene049444:CDS |
| CAATTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.3:-77755346 | MS.gene049444:CDS |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.3:+77755529 | None:intergenic |
| GACCTGCTCCGATGCCGAGA+AGG | 0.561229 | 3.3:+77755785 | None:intergenic |
| TTGAACAATGTGTTCTATTG+GGG | 0.569076 | 3.3:-77755322 | MS.gene049444:CDS |
| ATAAAGGAATACAAAGTGCA+GGG | 0.569652 | 3.3:-77754209 | MS.gene049444:CDS |
| TTACACATACACAGGTACAC+TGG | 0.578312 | 3.3:-77754237 | MS.gene049444:intron |
| GAAAGAGAACAATGATGAAG+AGG | 0.582616 | 3.3:-77754067 | MS.gene049444:CDS |
| GCTCTTTCAGGAATGGGAGG+TGG | 0.583306 | 3.3:-77756018 | MS.gene049444:CDS |
| GTGCAGGGGCAGCAGTTGCA+TGG | 0.584419 | 3.3:-77754194 | MS.gene049444:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.592314 | 3.3:-77755166 | MS.gene049444:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.3:+77755406 | None:intergenic |
| GATTAAACATAAACATGGGA+AGG | 0.600527 | 3.3:-77755161 | MS.gene049444:intron |
| AGAGAACAATGATGAAGAGG+AGG | 0.602443 | 3.3:-77754064 | MS.gene049444:CDS |
| TTTATTCTTAATTACAACCG+TGG | 0.604418 | 3.3:-77755640 | MS.gene049444:CDS |
| ACAGAGCCATTGTTATCTGA+AGG | 0.606305 | 3.3:+77754021 | None:intergenic |
| ATTGGGGAGCACAAATGATA+GGG | 0.606614 | 3.3:-77755306 | MS.gene049444:CDS |
| TCAACTTATGTACTCTACGC+TGG | 0.608201 | 3.3:-77755865 | MS.gene049444:CDS |
| GGTGGCATCTACAACATCCT+CGG | 0.616298 | 3.3:-77755916 | MS.gene049444:CDS |
| GTGTTTGGTATCCTAGGTGG+TGG | 0.616607 | 3.3:-77755934 | MS.gene049444:CDS |
| TAACCATAACGTGTCTCCAA+TGG | 0.617946 | 3.3:-77754163 | MS.gene049444:CDS |
| ATCAGATTAAACATAAACAT+GGG | 0.623105 | 3.3:-77755165 | MS.gene049444:CDS |
| AGGGATTGTGGGAATTAGTG+TGG | 0.623531 | 3.3:-77755230 | MS.gene049444:CDS |
| GTTCCTTTACGATTCATGGG+TGG | 0.628209 | 3.3:+77755724 | None:intergenic |
| TGTTGTAGATGCCACCACCT+AGG | 0.637389 | 3.3:+77755923 | None:intergenic |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.3:-77755473 | MS.gene049444:CDS |
| AATGCTCTTTCAGGAATGGG+AGG | 0.638536 | 3.3:-77756021 | MS.gene049444:CDS |
| GGTCTATTATGGGCTGCACA+AGG | 0.640527 | 3.3:-77755766 | MS.gene049444:CDS |
| TAGGATACCAAACACTGCAA+AGG | 0.650625 | 3.3:+77755942 | None:intergenic |
| GCAGTGTTTGGTATCCTAGG+TGG | 0.651404 | 3.3:-77755937 | MS.gene049444:CDS |
| AATTTAGTTTGAGAACAAGA+GGG | 0.657205 | 3.3:-77755345 | MS.gene049444:CDS |
| TAAAGGAATACAAAGTGCAG+GGG | 0.659624 | 3.3:-77754208 | MS.gene049444:CDS |
| TGCAAAGGTTGTGTAAAGTG+CGG | 0.675637 | 3.3:+77755957 | None:intergenic |
| GTTGCTCCTTCAGATAACAA+TGG | 0.683587 | 3.3:-77754027 | MS.gene049444:CDS |
| CCGTAGCAGCTTGATCACCA+CGG | 0.690669 | 3.3:+77755623 | None:intergenic |
| CCTGCGAAAAGAGTTAAGTG+AGG | 0.734855 | 3.3:+77755892 | None:intergenic |
| AAAGAGTTAAGTGAGGTCCG+AGG | 0.738397 | 3.3:+77755899 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATGATATATGAAATT+TGG | - | chr3.3:77755748-77755767 | MS.gene049444:CDS | 10.0% |
| !!! | ATTTATATTTGTTAACAAAA+AGG | - | chr3.3:77755361-77755380 | MS.gene049444:CDS | 10.0% |
| !!! | TTTATATTTGTTAACAAAAA+GGG | - | chr3.3:77755362-77755381 | MS.gene049444:CDS | 10.0% |
| !! | AATGAAAAATACAAAACAAA+AGG | + | chr3.3:77754944-77754963 | None:intergenic | 15.0% |
| !! | AGTTAAAAATATATTTCAAG+TGG | + | chr3.3:77755196-77755215 | None:intergenic | 15.0% |
| !!! | GTTAATAAATATTTAGAGTA+GGG | - | chr3.3:77755473-77755492 | MS.gene049444:CDS | 15.0% |
| !!! | TGTTAATAAATATTTAGAGT+AGG | - | chr3.3:77755472-77755491 | MS.gene049444:CDS | 15.0% |
| !!! | TTGTTTTGTATTTTTCATTT+GGG | - | chr3.3:77754945-77754964 | MS.gene049444:intron | 15.0% |
| !!! | TTTGTTTTGTATTTTTCATT+TGG | - | chr3.3:77754944-77754963 | MS.gene049444:intron | 15.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.3:77754875-77754894 | MS.gene049444:intron | 20.0% |
| !! | ATCAGATTAAACATAAACAT+GGG | - | chr3.3:77754876-77754895 | MS.gene049444:intron | 20.0% |
| !! | CTAAAAATACAAATTAGTGT+TGG | + | chr3.3:77755695-77755714 | None:intergenic | 20.0% |
| !! | GTATGATAATAGTTGAAATT+TGG | - | chr3.3:77755577-77755596 | MS.gene049444:CDS | 20.0% |
| !! | GTTGTTTATGATTATAGTAA+AGG | + | chr3.3:77754208-77754227 | None:intergenic | 20.0% |
| !! | TAATAAAATCAAACAGAATC+TGG | + | chr3.3:77755061-77755080 | None:intergenic | 20.0% |
| !! | TATTCTTGGATCTATTATAT+GGG | - | chr3.3:77754838-77754857 | MS.gene049444:intron | 20.0% |
| !! | TTCTTAAATTGTTCTACAAT+TGG | - | chr3.3:77754594-77754613 | MS.gene049444:intron | 20.0% |
| !!! | GAACTTACATTTCAATTTTT+TGG | - | chr3.3:77754336-77754355 | MS.gene049444:intron | 20.0% |
| ! | AACCATCAAAACTAACAATA+AGG | + | chr3.3:77755946-77755965 | None:intergenic | 25.0% |
| ! | ACCATCAAAACTAACAATAA+GGG | + | chr3.3:77755945-77755964 | None:intergenic | 25.0% |
| ! | ACGGTTGTAATTAAGAATAA+AGG | + | chr3.3:77754402-77754421 | None:intergenic | 25.0% |
| ! | ATTCTTGGATCTATTATATG+GGG | - | chr3.3:77754839-77754858 | MS.gene049444:intron | 25.0% |
| ! | CGGTTGTAATTAAGAATAAA+GGG | + | chr3.3:77754401-77754420 | None:intergenic | 25.0% |
| ! | CTATTCTTGGATCTATTATA+TGG | - | chr3.3:77754837-77754856 | MS.gene049444:intron | 25.0% |
| ! | TTAAGAGTAGAAAGAAAAGA+GGG | - | chr3.3:77754792-77754811 | MS.gene049444:intron | 25.0% |
| ! | TTAGTGATTAGAATTTCTTG+TGG | - | chr3.3:77755553-77755572 | MS.gene049444:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.3:77754791-77754810 | MS.gene049444:intron | 25.0% |
| ! | TTTATTCTTAATTACAACCG+TGG | - | chr3.3:77754401-77754420 | MS.gene049444:intron | 25.0% |
| !! | GTCTATTTCTTGTCAAAATT+TGG | - | chr3.3:77755495-77755514 | MS.gene049444:CDS | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.3:77754440-77754459 | MS.gene049444:intron | 25.0% |
| !!! | AATTTAGTTTGAGAACAAGA+GGG | - | chr3.3:77754696-77754715 | MS.gene049444:intron | 25.0% |
| !!! | ATTGTTAGTTTTGATGGTTT+TGG | - | chr3.3:77755947-77755966 | MS.gene049444:CDS | 25.0% |
| !!! | TTTTGGAGTATTTTCAACAT+GGG | - | chr3.3:77754353-77754372 | MS.gene049444:intron | 25.0% |
| !!! | TTTTTGGAGTATTTTCAACA+TGG | - | chr3.3:77754352-77754371 | MS.gene049444:intron | 25.0% |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.3:77754518-77754537 | MS.gene049444:intron | 30.0% | |
| ATAAAGGAATACAAAGTGCA+GGG | - | chr3.3:77755832-77755851 | MS.gene049444:CDS | 30.0% | |
| CAAAGAATTATCTAAGCTGT+AGG | - | chr3.3:77755145-77755164 | MS.gene049444:intron | 30.0% | |
| GATTAAACATAAACATGGGA+AGG | - | chr3.3:77754880-77754899 | MS.gene049444:intron | 30.0% | |
| GTATGATGATAGTCGAAATT+TGG | - | chr3.3:77755656-77755675 | MS.gene049444:CDS | 30.0% | |
| GTTGAACAATGTGTTCTATT+GGG | - | chr3.3:77754718-77754737 | MS.gene049444:intron | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.3:77754323-77754342 | None:intergenic | 30.0% | |
| TATAAAGGAATACAAAGTGC+AGG | - | chr3.3:77755831-77755850 | MS.gene049444:CDS | 30.0% | |
| TGGAACTTATATAGGTTTCA+TGG | - | chr3.3:77754448-77754467 | MS.gene049444:intron | 30.0% | |
| TGTTTCAGAGTATGGTTTAT+TGG | - | chr3.3:77754981-77755000 | MS.gene049444:intron | 30.0% | |
| TTAGTAACTAGCATTTCTTG+TGG | - | chr3.3:77755711-77755730 | MS.gene049444:CDS | 30.0% | |
| TTAGTGATTAGCATTTCTTG+TGG | - | chr3.3:77755632-77755651 | MS.gene049444:CDS | 30.0% | |
| TTGAACAATGTGTTCTATTG+GGG | - | chr3.3:77754719-77754738 | MS.gene049444:intron | 30.0% | |
| ! | AGTATGGTTTATTGGTCTAT+TGG | - | chr3.3:77754989-77755008 | MS.gene049444:intron | 30.0% |
| !! | ACTGATTTTTACACATACAC+AGG | - | chr3.3:77755796-77755815 | MS.gene049444:CDS | 30.0% |
| !! | CAATTTAGTTTGAGAACAAG+AGG | - | chr3.3:77754695-77754714 | MS.gene049444:intron | 30.0% |
| !!! | GTATTTTTCATTTGGGTTGT+TGG | - | chr3.3:77754952-77754971 | MS.gene049444:intron | 30.0% |
| !!! | TCCCTTATTGTTAGTTTTGA+TGG | - | chr3.3:77755941-77755960 | MS.gene049444:CDS | 30.0% |
| AGAAAGAAAAGAGGGATTGT+GGG | - | chr3.3:77754800-77754819 | MS.gene049444:intron | 35.0% | |
| AGGTACACTGGATTCTATAA+AGG | - | chr3.3:77755816-77755835 | MS.gene049444:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.3:77754744-77754763 | MS.gene049444:intron | 35.0% | |
| GAAAGAGAACAATGATGAAG+AGG | - | chr3.3:77755974-77755993 | MS.gene049444:CDS | 35.0% | |
| GGTTGAACAATGTGTTCTAT+TGG | - | chr3.3:77754717-77754736 | MS.gene049444:intron | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.3:77754324-77754343 | None:intergenic | 35.0% | |
| TAAAGGAATACAAAGTGCAG+GGG | - | chr3.3:77755833-77755852 | MS.gene049444:CDS | 35.0% | |
| TAGAAAGAAAAGAGGGATTG+TGG | - | chr3.3:77754799-77754818 | MS.gene049444:intron | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.3:77754515-77754534 | None:intergenic | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.3:77754017-77754036 | MS.gene049444:CDS | 35.0% | |
| ! | ATTAGTGTGGTTGCTATTCT+TGG | - | chr3.3:77754824-77754843 | MS.gene049444:intron | 35.0% |
| ! | TCATGGCTTTTATGTCACTA+GGG | - | chr3.3:77754465-77754484 | MS.gene049444:intron | 35.0% |
| ! | TTCATGGCTTTTATGTCACT+AGG | - | chr3.3:77754464-77754483 | MS.gene049444:intron | 35.0% |
| !! | AAATTGATTAGCTTGTGAGC+AGG | - | chr3.3:77755238-77755257 | MS.gene049444:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.3:77754760-77754779 | MS.gene049444:intron | 35.0% |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.3:77754568-77754587 | MS.gene049444:intron | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.3:77754638-77754657 | None:intergenic | 40.0% | |
| ACAGAGCCATTGTTATCTGA+AGG | + | chr3.3:77756023-77756042 | None:intergenic | 40.0% | |
| ACATAAACATGGGAAGGTCT+TGG | - | chr3.3:77754886-77754905 | MS.gene049444:intron | 40.0% | |
| AGAGAACAATGATGAAGAGG+AGG | - | chr3.3:77755977-77755996 | MS.gene049444:CDS | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.3:77754749-77754768 | MS.gene049444:intron | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.3:77754842-77754861 | MS.gene049444:intron | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.3:77754743-77754762 | MS.gene049444:intron | 40.0% | |
| GGATGCTATGTTTCAGAGTA+TGG | - | chr3.3:77754973-77754992 | MS.gene049444:intron | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.3:77754016-77754035 | MS.gene049444:CDS | 40.0% | |
| GTTGCTCCTTCAGATAACAA+TGG | - | chr3.3:77756014-77756033 | MS.gene049444:CDS | 40.0% | |
| TAACCATAACGTGTCTCCAA+TGG | - | chr3.3:77755878-77755897 | MS.gene049444:CDS | 40.0% | |
| TACACAACCTTTGCAGTGTT+TGG | - | chr3.3:77754092-77754111 | MS.gene049444:CDS | 40.0% | |
| TAGGATACCAAACACTGCAA+AGG | + | chr3.3:77754102-77754121 | None:intergenic | 40.0% | |
| TATCCACCCATGAATCGTAA+AGG | - | chr3.3:77754314-77754333 | MS.gene049444:intron | 40.0% | |
| TCAACTTATGTACTCTACGC+TGG | - | chr3.3:77754176-77754195 | MS.gene049444:CDS | 40.0% | |
| TGCAAAGGTTGTGTAAAGTG+CGG | + | chr3.3:77754087-77754106 | None:intergenic | 40.0% | |
| TTACACATACACAGGTACAC+TGG | - | chr3.3:77755804-77755823 | MS.gene049444:CDS | 40.0% | |
| TTCACTATCAACTGTGCCAT+TGG | + | chr3.3:77755897-77755916 | None:intergenic | 40.0% | |
| TTGACGCATCAGTACCAAAA+TGG | - | chr3.3:77755390-77755409 | MS.gene049444:CDS | 40.0% | |
| TTTGCAGTGTTTGGTATCCT+AGG | - | chr3.3:77754101-77754120 | MS.gene049444:CDS | 40.0% | |
| ! | AAAATGGTGGGACCATTTCA+TGG | - | chr3.3:77755406-77755425 | MS.gene049444:CDS | 40.0% |
| ! | ACTAGAGCTTTAGTGCAAGT+GGG | - | chr3.3:77755433-77755452 | MS.gene049444:CDS | 40.0% |
| ! | ATGAAATGGTCCCACCATTT+TGG | + | chr3.3:77755407-77755426 | None:intergenic | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.3:77754735-77754754 | MS.gene049444:intron | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.3:77754734-77754753 | MS.gene049444:intron | 40.0% |
| ! | TGGGAAGGTCTTGGATTTTA+AGG | - | chr3.3:77754895-77754914 | MS.gene049444:intron | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.3:77755023-77755042 | MS.gene049444:CDS | 40.0% |
| !! | CAAGCTTTTGCTATAGTTGC+CGG | - | chr3.3:77754230-77754249 | MS.gene049444:intron | 40.0% |
| !! | GGCACAGTTGATAGTGAATT+GGG | - | chr3.3:77755899-77755918 | MS.gene049444:CDS | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.3:77754902-77754921 | MS.gene049444:intron | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.3:77754356-77754375 | MS.gene049444:intron | 40.0% |
| !! | TGGCACAGTTGATAGTGAAT+TGG | - | chr3.3:77755898-77755917 | MS.gene049444:CDS | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.3:77754365-77754384 | MS.gene049444:intron | 40.0% |
| !!! | ATTTTGGTACTGATGCGTCA+AGG | + | chr3.3:77755391-77755410 | None:intergenic | 40.0% |
| AAAGAGTTAAGTGAGGTCCG+AGG | + | chr3.3:77754145-77754164 | None:intergenic | 45.0% | |
| AATGCTCTTTCAGGAATGGG+AGG | - | chr3.3:77754020-77754039 | MS.gene049444:CDS | 45.0% | |
| ACGCATCAGTACCAAAATGG+TGG | - | chr3.3:77755393-77755412 | MS.gene049444:CDS | 45.0% | |
| AGGGATTGTGGGAATTAGTG+TGG | - | chr3.3:77754811-77754830 | MS.gene049444:intron | 45.0% | |
| CAAGCTGCTACGGTTAATGA+TGG | - | chr3.3:77754428-77754447 | MS.gene049444:intron | 45.0% | |
| CATCGGAGCAGGTCTATTAT+GGG | - | chr3.3:77754265-77754284 | MS.gene049444:intron | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+AGG | + | chr3.3:77754152-77754171 | None:intergenic | 45.0% | |
| CGCATCAGTACCAAAATGGT+GGG | - | chr3.3:77755394-77755413 | MS.gene049444:CDS | 45.0% | |
| CGGCAACTATAGCAAAAGCT+TGG | + | chr3.3:77754232-77754251 | None:intergenic | 45.0% | |
| GGTTGTGTAAAGTGCGGTTA+AGG | + | chr3.3:77754081-77754100 | None:intergenic | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.3:77754320-77754339 | None:intergenic | 45.0% | |
| TAGCATTTCTTGTGGAGCAC+TGG | - | chr3.3:77755719-77755738 | MS.gene049444:CDS | 45.0% | |
| TATTATATGGGGTGGTGCAC+TGG | - | chr3.3:77754850-77754869 | MS.gene049444:intron | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.3:77754624-77754643 | MS.gene049444:intron | 45.0% | |
| ! | CACTAGAGCTTTAGTGCAAG+TGG | - | chr3.3:77755432-77755451 | MS.gene049444:CDS | 45.0% |
| ! | CACTTGCACTAAAGCTCTAG+TGG | + | chr3.3:77755434-77755453 | None:intergenic | 45.0% |
| ! | CCTCACTTAACTCTTTTCGC+AGG | - | chr3.3:77754149-77754168 | MS.gene049444:CDS | 45.0% |
| ! | GCTCTAGTGGATCCATGAAA+TGG | + | chr3.3:77755421-77755440 | None:intergenic | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.3:77754368-77754387 | MS.gene049444:intron | 45.0% |
| !! | ATTTATTAACAAATAAAAAA+AGG | + | chr3.3:77755463-77755482 | None:intergenic | 5.0% |
| GAAGGAGCAACATGCTTGAC+AGG | + | chr3.3:77756005-77756024 | None:intergenic | 50.0% | |
| GCAGTGTTTGGTATCCTAGG+TGG | - | chr3.3:77754104-77754123 | MS.gene049444:CDS | 50.0% | |
| GCATCGGAGCAGGTCTATTA+TGG | - | chr3.3:77754264-77754283 | MS.gene049444:intron | 50.0% | |
| GGTGGCATCTACAACATCCT+CGG | - | chr3.3:77754125-77754144 | MS.gene049444:CDS | 50.0% | |
| GTGTTTGGTATCCTAGGTGG+TGG | - | chr3.3:77754107-77754126 | MS.gene049444:CDS | 50.0% | |
| TGTTGTAGATGCCACCACCT+AGG | + | chr3.3:77754121-77754140 | None:intergenic | 50.0% | |
| ! | GGTCTATTATGGGCTGCACA+AGG | - | chr3.3:77754275-77754294 | MS.gene049444:intron | 50.0% |
| ! | GTGCCATTGGAGACACGTTA+TGG | + | chr3.3:77755884-77755903 | None:intergenic | 50.0% |
| !! | AAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.3:77754072-77754091 | None:intergenic | 50.0% |
| !!! | GAGTCTGGTTCTGCTTTTGC+TGG | - | chr3.3:77754917-77754936 | MS.gene049444:intron | 50.0% |
| CCGTAGCAGCTTGATCACCA+CGG | + | chr3.3:77754421-77754440 | None:intergenic | 55.0% | |
| CCGTGGTGATCAAGCTGCTA+CGG | - | chr3.3:77754418-77754437 | MS.gene049444:intron | 55.0% | |
| CTTTCAGGAATGGGAGGTGG+TGG | - | chr3.3:77754026-77754045 | MS.gene049444:CDS | 55.0% | |
| GCTCTTTCAGGAATGGGAGG+TGG | - | chr3.3:77754023-77754042 | MS.gene049444:CDS | 55.0% | |
| ACCTGCTCCGATGCCGAGAA+GGG | + | chr3.3:77754258-77754277 | None:intergenic | 60.0% | |
| ATAGTTGCCGGCGCCCTTCT+CGG | - | chr3.3:77754242-77754261 | MS.gene049444:intron | 60.0% | |
| GACCTGCTCCGATGCCGAGA+AGG | + | chr3.3:77754259-77754278 | None:intergenic | 65.0% | |
| GTGCAGGGGCAGCAGTTGCA+TGG | - | chr3.3:77755847-77755866 | MS.gene049444:CDS | 65.0% | |
| ! | GCCCTTCTCGGCATCGGAGC+AGG | - | chr3.3:77754254-77754273 | MS.gene049444:intron | 70.0% |
| ! | TCCGATGCCGAGAAGGGCGC+CGG | + | chr3.3:77754252-77754271 | None:intergenic | 70.0% |
| GCCGGCGCCCTTCTCGGCAT+CGG | - | chr3.3:77754248-77754267 | MS.gene049444:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77754014 | 77756049 | 77754014 | ID=MS.gene049444 |
| chr3.3 | mRNA | 77754014 | 77756049 | 77754014 | ID=MS.gene049444.t1;Parent=MS.gene049444 |
| chr3.3 | exon | 77755162 | 77756049 | 77755162 | ID=MS.gene049444.t1.exon1;Parent=MS.gene049444.t1 |
| chr3.3 | CDS | 77755162 | 77756049 | 77755162 | ID=cds.MS.gene049444.t1;Parent=MS.gene049444.t1 |
| chr3.3 | exon | 77755019 | 77755074 | 77755019 | ID=MS.gene049444.t1.exon2;Parent=MS.gene049444.t1 |
| chr3.3 | CDS | 77755019 | 77755074 | 77755019 | ID=cds.MS.gene049444.t1;Parent=MS.gene049444.t1 |
| chr3.3 | exon | 77754014 | 77754245 | 77754014 | ID=MS.gene049444.t1.exon3;Parent=MS.gene049444.t1 |
| chr3.3 | CDS | 77754014 | 77754245 | 77754014 | ID=cds.MS.gene049444.t1;Parent=MS.gene049444.t1 |
| Gene Sequence |
| Protein sequence |
