Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049443.t1 | XP_003602432.1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 4.50E-246 | 860.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049443.t1 | Q56WD3 | 67.5 | 421 | 132 | 2 | 16 | 432 | 19 | 438 | 5.1e-166 | 585.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049443.t1 | G7J9P1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 3.2e-246 | 860.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049443 | MS.gene050128 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene05316 | 0.810665 | 1.03E-50 | -1.69E-46 |
| MS.gene049443 | MS.gene053494 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene054930 | 0.801121 | 1.05E-48 | -1.69E-46 |
| MS.gene049443 | MS.gene056447 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene049443 | MS.gene06573 | 0.82423 | 9.03E-54 | -1.69E-46 |
| MS.gene049443 | MS.gene066865 | 0.803805 | 2.92E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene066866 | 0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene066868 | 0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene074393 | -0.82438 | 8.33E-54 | -1.69E-46 |
| MS.gene049443 | MS.gene08753 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene20184 | 0.81808 | 2.36E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene20315 | 0.801311 | 9.56E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene22820 | -0.803833 | 2.89E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene25913 | -0.826084 | 3.29E-54 | -1.69E-46 |
| MS.gene049443 | MS.gene26514 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene049443 | MS.gene28693 | 0.825061 | 5.76E-54 | -1.69E-46 |
| MS.gene049443 | MS.gene28694 | 0.828387 | 9.25E-55 | -1.69E-46 |
| MS.gene049443 | MS.gene29000 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene29986 | 0.80537 | 1.38E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene31671 | 0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene39638 | 0.828913 | 6.90E-55 | -1.69E-46 |
| MS.gene049443 | MS.gene40169 | 0.834372 | 3.11E-56 | -1.69E-46 |
| MS.gene049443 | MS.gene45170 | 0.81617 | 6.35E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene45171 | 0.821627 | 3.65E-53 | -1.69E-46 |
| MS.gene049443 | MS.gene45533 | 0.804157 | 2.47E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene52512 | 0.80252 | 5.40E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene58676 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene049443 | MS.gene59149 | 0.843295 | 1.53E-58 | -1.69E-46 |
| MS.gene049443 | MS.gene68819 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene70102 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene70586 | -0.819983 | 8.72E-53 | -1.69E-46 |
| MS.gene049443 | MS.gene80025 | 0.802733 | 4.88E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene80298 | 0.806099 | 9.70E-50 | -1.69E-46 |
| MS.gene049443 | MS.gene84523 | 0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene049443 | MS.gene85253 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene87170 | 0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene89092 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene049443 | MS.gene93887 | 0.801507 | 8.72E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene93890 | 0.809065 | 2.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049443 | MS.gene06574 | PPI |
| MS.gene049443 | MS.gene049444 | PPI |
| MS.gene06573 | MS.gene049443 | PPI |
| MS.gene049443 | MS.gene013467 | PPI |
| MS.gene049443 | MS.gene013466 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049443.t1 | MTR_3g093290 | 98.000 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 0.0 | 907 |
| MS.gene049443.t1 | MTR_3g093270 | 93.987 | 449 | 26 | 1 | 3 | 450 | 2 | 450 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049443.t1 | AT1G18010 | 67.981 | 431 | 133 | 2 | 16 | 442 | 19 | 448 | 0.0 | 615 |
| MS.gene049443.t1 | AT1G18000 | 67.981 | 431 | 133 | 2 | 16 | 442 | 19 | 448 | 0.0 | 615 |
Find 96 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACAAATCATCCTTAT+TGG | 0.164299 | 3.3:-77768756 | MS.gene049443:CDS |
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.3:-77768711 | MS.gene049443:CDS |
| CTGTTCTTGGATCTATTATA+TGG | 0.213344 | 3.3:-77767885 | MS.gene049443:CDS |
| ATTAGTGTGGTTGCTGTTCT+TGG | 0.242665 | 3.3:-77767898 | MS.gene049443:CDS |
| AGATGCCATGTTTCAGAGTA+TGG | 0.258685 | 3.3:-77767749 | MS.gene049443:CDS |
| TGTTTCAGAGTATGGTTTAC+TGG | 0.266519 | 3.3:-77767741 | MS.gene049443:CDS |
| TTTCACAAATCATCCTTATT+GGG | 0.293770 | 3.3:-77768755 | MS.gene049443:CDS |
| GCATCGGAGCTGGACTATTA+TGG | 0.301187 | 3.3:-77768458 | MS.gene049443:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.312658 | 3.3:-77768282 | MS.gene049443:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.3:-77768357 | MS.gene049443:CDS |
| CGATTGTAATTAAGAATAAA+AGG | 0.315237 | 3.3:+77768324 | None:intergenic |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.3:+77768401 | None:intergenic |
| TGTTCTTGGATCTATTATAT+GGG | 0.338310 | 3.3:-77767884 | MS.gene049443:CDS |
| TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3.3:-77768274 | MS.gene049443:CDS |
| AGGTACACAGGATTCTATAA+AGG | 0.355926 | 3.3:-77767295 | MS.gene049443:CDS |
| AGTATGGTTTACTGGTCTAT+TGG | 0.363404 | 3.3:-77767733 | MS.gene049443:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.3:-77767962 | MS.gene049443:CDS |
| GCTGTTCTCGGCATCGGAGC+TGG | 0.372968 | 3.3:-77768468 | MS.gene049443:CDS |
| ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3.3:-77767836 | MS.gene049443:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.383645 | 3.3:-77767988 | MS.gene049443:CDS |
| TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3.3:-77768128 | MS.gene049443:CDS |
| TTCACAATCAACTGTGTCAT+TGG | 0.386175 | 3.3:+77767217 | None:intergenic |
| TCCGGTGCTGTTCTCGGCAT+CGG | 0.396725 | 3.3:-77768474 | MS.gene049443:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.404295 | 3.3:-77768705 | MS.gene049443:CDS |
| TGACACAGTTGATTGTGAAT+TGG | 0.408150 | 3.3:-77767213 | MS.gene049443:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.3:-77767979 | MS.gene049443:CDS |
| GCTTGTGTAGAGTGCGGTTA+AGG | 0.415646 | 3.3:+77768644 | None:intergenic |
| GTAGTTTCCGGTGCTGTTCT+CGG | 0.424731 | 3.3:-77768480 | MS.gene049443:CDS |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.3:-77768098 | MS.gene049443:CDS |
| TAGAAAGAAAAGAGGAATTG+TGG | 0.430494 | 3.3:-77767923 | MS.gene049443:CDS |
| TTACTGGTCTATTGGAGCAT+TGG | 0.434243 | 3.3:-77767725 | MS.gene049443:CDS |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.3:-77767978 | MS.gene049443:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.440838 | 3.3:-77767931 | MS.gene049443:CDS |
| AGAAAGAAAAGAGGAATTGT+GGG | 0.444597 | 3.3:-77767922 | MS.gene049443:CDS |
| GACACAGTTGATTGTGAATT+GGG | 0.445991 | 3.3:-77767212 | MS.gene049443:CDS |
| ACTAAGCTATCCGTTATTGT+TGG | 0.457774 | 3.3:-77767179 | MS.gene049443:CDS |
| GGTACACAGGATTCTATAAA+GGG | 0.462985 | 3.3:-77767294 | MS.gene049443:CDS |
| CTTTCAGGAATGGGTGGTGG+TGG | 0.463947 | 3.3:-77768696 | MS.gene049443:CDS |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.3:-77768204 | MS.gene049443:CDS |
| TATTATATGGGGTGGTGCAT+TGG | 0.473668 | 3.3:-77767872 | MS.gene049443:CDS |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.477707 | 3.3:-77768706 | MS.gene049443:CDS |
| AGATGTCATAATAGCACCTT+GGG | 0.481690 | 3.3:+77768431 | None:intergenic |
| ATCATTAAAACCAACAATAA+CGG | 0.482912 | 3.3:+77767169 | None:intergenic |
| ACAAATCATCCTTATTGGGT+TGG | 0.488006 | 3.3:-77768751 | MS.gene049443:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.3:-77767973 | MS.gene049443:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.3:-77768354 | MS.gene049443:CDS |
| TCCTCCTATGTCCTTTACAC+TGG | 0.496955 | 3.3:-77768546 | MS.gene049443:CDS |
| GAAAGAGCATTGAACATGCC+TGG | 0.498347 | 3.3:+77768714 | None:intergenic |
| ATAAGGATGATTTGTGAAAG+AGG | 0.505507 | 3.3:+77768759 | None:intergenic |
| GAGTGCGGTTAAGGCGTTGT+TGG | 0.510267 | 3.3:+77768653 | None:intergenic |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.3:+77768402 | None:intergenic |
| TTCCTTTACGATTCATGGGT+GGG | 0.515970 | 3.3:+77768406 | None:intergenic |
| GCTCTTTCAGGAATGGGTGG+TGG | 0.525680 | 3.3:-77768699 | MS.gene049443:CDS |
| TCCTGCGAAAAGAGTTAAGT+GGG | 0.528449 | 3.3:+77768572 | None:intergenic |
| AGAGGAAAGAACCAGTGTAA+AGG | 0.529052 | 3.3:+77768535 | None:intergenic |
| TCCGATGCCGAGAACAGCAC+CGG | 0.530799 | 3.3:+77768473 | None:intergenic |
| ATTGGGGAGCACAAATGATA+GGG | 0.533554 | 3.3:-77767987 | MS.gene049443:CDS |
| GTTGTTTATGATTGTAGTAG+AGG | 0.539382 | 3.3:+77768517 | None:intergenic |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.3:-77767699 | MS.gene049443:intron |
| CATCATTAACCGTAGCAGCT+TGG | 0.541866 | 3.3:+77768295 | None:intergenic |
| CAAGCTGCTACGGTTAATGA+TGG | 0.544285 | 3.3:-77768294 | MS.gene049443:CDS |
| TTTATTCTTAATTACAATCG+TGG | 0.549060 | 3.3:-77768321 | MS.gene049443:CDS |
| TATAAAGGGATACAAAGTGC+GGG | 0.551438 | 3.3:-77767280 | MS.gene049443:CDS |
| TACCCACCCATGAATCGTAA+AGG | 0.557859 | 3.3:-77768408 | MS.gene049443:CDS |
| CAATTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.3:-77768027 | MS.gene049443:CDS |
| TGTTCAACGACACCACCCAT+TGG | 0.559220 | 3.3:+77768846 | None:intergenic |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.3:+77768210 | None:intergenic |
| TCGTGGCGACCAAGCTGCTA+CGG | 0.562798 | 3.3:-77768304 | MS.gene049443:CDS |
| GTTCCTTTACGATTCATGGG+TGG | 0.571188 | 3.3:+77768405 | None:intergenic |
| GTTCTTGGATCTATTATATG+GGG | 0.579371 | 3.3:-77767883 | MS.gene049443:CDS |
| ATCCTGCGAAAAGAGTTAAG+TGG | 0.581047 | 3.3:+77768571 | None:intergenic |
| AGAACCAGTGTAAAGGACAT+AGG | 0.581796 | 3.3:+77768542 | None:intergenic |
| CTTGGATCTATTATATGGGG+TGG | 0.589106 | 3.3:-77767880 | MS.gene049443:CDS |
| AATGCTCTTTCAGGAATGGG+TGG | 0.595210 | 3.3:-77768702 | MS.gene049443:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.3:+77768087 | None:intergenic |
| AAGATGTCATAATAGCACCT+TGG | 0.600718 | 3.3:+77768430 | None:intergenic |
| GATTAAACATAAACATGGCA+AGG | 0.600741 | 3.3:-77767842 | MS.gene049443:CDS |
| TGAGGTTTCCGGTGGTTGAG+TGG | 0.602501 | 3.3:+77768812 | None:intergenic |
| AGAATCAGCCACTCAACCAC+CGG | 0.603694 | 3.3:-77768820 | MS.gene049443:CDS |
| GGTGGCATCTATAACATCCT+CGG | 0.603879 | 3.3:-77768597 | MS.gene049443:CDS |
| TGTTATAGATGCCACCACCT+AGG | 0.620884 | 3.3:+77768604 | None:intergenic |
| GGACTATTATGGAGTGCCCA+AGG | 0.624792 | 3.3:-77768447 | MS.gene049443:CDS |
| TTGGACTTACACAGGTACAC+AGG | 0.625881 | 3.3:-77767307 | MS.gene049443:intron |
| AGGAATTGTGGGAATTAGTG+TGG | 0.626228 | 3.3:-77767911 | MS.gene049443:CDS |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.3:-77768154 | MS.gene049443:CDS |
| ATAAAGGGATACAAAGTGCG+GGG | 0.639763 | 3.3:-77767279 | MS.gene049443:CDS |
| ACCAGTGTAAAGGACATAGG+AGG | 0.645176 | 3.3:+77768545 | None:intergenic |
| AATTTAGTTTGAGAACAAGA+GGG | 0.657205 | 3.3:-77768026 | MS.gene049443:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.664350 | 3.3:-77767847 | MS.gene049443:CDS |
| AAAGAGTTAAGTGGGGTCCG+AGG | 0.668411 | 3.3:+77768580 | None:intergenic |
| CTATAAAGGGATACAAAGTG+CGG | 0.672233 | 3.3:-77767281 | MS.gene049443:CDS |
| GTAAACCATACTCTGAAACA+TGG | 0.672850 | 3.3:+77767744 | None:intergenic |
| TAAAGGGATACAAAGTGCGG+GGG | 0.692575 | 3.3:-77767278 | MS.gene049443:CDS |
| TGTGAAGCTTGTGTAGAGTG+CGG | 0.751066 | 3.3:+77768638 | None:intergenic |
| CCTGCGAAAAGAGTTAAGTG+GGG | 0.759171 | 3.3:+77768573 | None:intergenic |
| TGTGAAAGAGGACAATAACG+AGG | 0.786049 | 3.3:-77767140 | MS.gene049443:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAATACAAAACAAA+AGG | + | chr3.3:77768194-77768213 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTATTTTTCTTTT+GGG | - | chr3.3:77768195-77768214 | MS.gene049443:CDS | 15.0% |
| !!! | TTTGTTTTGTATTTTTCTTT+TGG | - | chr3.3:77768194-77768213 | MS.gene049443:CDS | 15.0% |
| !! | AATAATCCACAAAAAAATAC+TGG | + | chr3.3:77768516-77768535 | None:intergenic | 20.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.3:77768125-77768144 | MS.gene049443:CDS | 20.0% |
| !! | ATCATTAAAACCAACAATAA+CGG | + | chr3.3:77768806-77768825 | None:intergenic | 20.0% |
| !! | CGATTGTAATTAAGAATAAA+AGG | + | chr3.3:77767651-77767670 | None:intergenic | 20.0% |
| !! | TGAAACTTCAAGAAAATATT+TGG | - | chr3.3:77768450-77768469 | MS.gene049443:CDS | 20.0% |
| !! | TTCTTAAATTGTTCTACAAT+TGG | - | chr3.3:77767844-77767863 | MS.gene049443:CDS | 20.0% |
| !! | TTTATTCTTAATTACAATCG+TGG | - | chr3.3:77767651-77767670 | MS.gene049443:intron | 20.0% |
| !!! | ATTGTTGGTTTTAATGATTT+TGG | - | chr3.3:77768808-77768827 | MS.gene049443:CDS | 20.0% |
| !!! | TAATTTGTAGTTTTAGTGAT+TGG | - | chr3.3:77768573-77768592 | MS.gene049443:CDS | 20.0% |
| ! | ATTTCCAAATTTCAACTATC+AGG | + | chr3.3:77768617-77768636 | None:intergenic | 25.0% |
| ! | TGTTCTTGGATCTATTATAT+GGG | - | chr3.3:77768088-77768107 | MS.gene049443:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.3:77768041-77768060 | MS.gene049443:CDS | 25.0% |
| ! | TTTCACAAATCATCCTTATT+GGG | - | chr3.3:77767217-77767236 | MS.gene049443:CDS | 25.0% |
| ! | TTTCCAAATTTCAACTATCA+GGG | + | chr3.3:77768616-77768635 | None:intergenic | 25.0% |
| !! | GAACTTACATTTCAATTTTC+TGG | - | chr3.3:77767586-77767605 | MS.gene049443:intron | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.3:77767690-77767709 | MS.gene049443:intron | 25.0% |
| !!! | AATTTAGTTTGAGAACAAGA+GGG | - | chr3.3:77767946-77767965 | MS.gene049443:CDS | 25.0% |
| !!! | GTTGAACAATGTGTTTTATT+GGG | - | chr3.3:77767968-77767987 | MS.gene049443:CDS | 25.0% |
| !!! | TATCAACCAGTATTTTTTTG+TGG | - | chr3.3:77768507-77768526 | MS.gene049443:CDS | 25.0% |
| !!! | TTGAACAATGTGTTTTATTG+GGG | - | chr3.3:77767969-77767988 | MS.gene049443:CDS | 25.0% |
| AAAAACAAACCAACCCAATA+AGG | + | chr3.3:77767233-77767252 | None:intergenic | 30.0% | |
| AAAATGCAACGAAGAACAAA+TGG | + | chr3.3:77768344-77768363 | None:intergenic | 30.0% | |
| AGAAAGAAAAGAGGAATTGT+GGG | - | chr3.3:77768050-77768069 | MS.gene049443:CDS | 30.0% | |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.3:77767768-77767787 | MS.gene049443:CDS | 30.0% | |
| CTGTTCTTGGATCTATTATA+TGG | - | chr3.3:77768087-77768106 | MS.gene049443:CDS | 30.0% | |
| CTTTCACAAATCATCCTTAT+TGG | - | chr3.3:77767216-77767235 | MS.gene049443:CDS | 30.0% | |
| GATTAAACATAAACATGGCA+AGG | - | chr3.3:77768130-77768149 | MS.gene049443:CDS | 30.0% | |
| GTTCTTGGATCTATTATATG+GGG | - | chr3.3:77768089-77768108 | MS.gene049443:CDS | 30.0% | |
| GTTGTTTATGATTGTAGTAG+AGG | + | chr3.3:77767458-77767477 | None:intergenic | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.3:77767573-77767592 | None:intergenic | 30.0% | |
| TAGAAAGAAAAGAGGAATTG+TGG | - | chr3.3:77768049-77768068 | MS.gene049443:CDS | 30.0% | |
| TATCCCTGATAGTTGAAATT+TGG | - | chr3.3:77768610-77768629 | MS.gene049443:CDS | 30.0% | |
| TGGAACTTATATAGGTTTCA+TGG | - | chr3.3:77767698-77767717 | MS.gene049443:intron | 30.0% | |
| TTAGTGATTGGCATTTCATT+TGG | - | chr3.3:77768585-77768604 | MS.gene049443:CDS | 30.0% | |
| ! | AAGAAGTGATGAAGTTTTTG+AGG | + | chr3.3:77767181-77767200 | None:intergenic | 30.0% |
| ! | ATAAGGATGATTTGTGAAAG+AGG | + | chr3.3:77767216-77767235 | None:intergenic | 30.0% |
| ! | GGTTGAACAATGTGTTTTAT+TGG | - | chr3.3:77767967-77767986 | MS.gene049443:CDS | 30.0% |
| ! | TACACAAGCTTCACAATTTT+CGG | - | chr3.3:77767342-77767361 | MS.gene049443:intron | 30.0% |
| !! | CAATTTAGTTTGAGAACAAG+AGG | - | chr3.3:77767945-77767964 | MS.gene049443:CDS | 30.0% |
| !!! | AATGATTTTGGTTGTGAAAG+AGG | - | chr3.3:77768820-77768839 | MS.gene049443:CDS | 30.0% |
| !!! | TTCTGGAGTATTTTCAACAT+GGG | - | chr3.3:77767603-77767622 | MS.gene049443:intron | 30.0% |
| !!! | TTTCTGGAGTATTTTCAACA+TGG | - | chr3.3:77767602-77767621 | MS.gene049443:intron | 30.0% |
| AAGATGTCATAATAGCACCT+TGG | + | chr3.3:77767545-77767564 | None:intergenic | 35.0% | |
| ACAAATCATCCTTATTGGGT+TGG | - | chr3.3:77767221-77767240 | MS.gene049443:CDS | 35.0% | |
| ACTAAGCTATCCGTTATTGT+TGG | - | chr3.3:77768793-77768812 | MS.gene049443:CDS | 35.0% | |
| ACTAATGTTTGGACTTACAC+AGG | - | chr3.3:77768657-77768676 | MS.gene049443:CDS | 35.0% | |
| AGATGTCATAATAGCACCTT+GGG | + | chr3.3:77767544-77767563 | None:intergenic | 35.0% | |
| AGGTACACAGGATTCTATAA+AGG | - | chr3.3:77768677-77768696 | MS.gene049443:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.3:77767994-77768013 | MS.gene049443:CDS | 35.0% | |
| CTACTGCTAGTACTAATGTT+TGG | - | chr3.3:77768646-77768665 | MS.gene049443:CDS | 35.0% | |
| CTATAAAGGGATACAAAGTG+CGG | - | chr3.3:77768691-77768710 | MS.gene049443:CDS | 35.0% | |
| GACACAGTTGATTGTGAATT+GGG | - | chr3.3:77768760-77768779 | MS.gene049443:CDS | 35.0% | |
| GGTACACAGGATTCTATAAA+GGG | - | chr3.3:77768678-77768697 | MS.gene049443:CDS | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.3:77767574-77767593 | None:intergenic | 35.0% | |
| TATAAAGGGATACAAAGTGC+GGG | - | chr3.3:77768692-77768711 | MS.gene049443:CDS | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.3:77767765-77767784 | None:intergenic | 35.0% | |
| TGACACAGTTGATTGTGAAT+TGG | - | chr3.3:77768759-77768778 | MS.gene049443:CDS | 35.0% | |
| TGTTTCAGAGTATGGTTTAC+TGG | - | chr3.3:77768231-77768250 | MS.gene049443:CDS | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.3:77767267-77767286 | MS.gene049443:CDS | 35.0% | |
| TTCACAATCAACTGTGTCAT+TGG | + | chr3.3:77768758-77768777 | None:intergenic | 35.0% | |
| ! | AGTATGGTTTACTGGTCTAT+TGG | - | chr3.3:77768239-77768258 | MS.gene049443:CDS | 35.0% |
| ! | TCATGGCTTTTATGTCACTA+GGG | - | chr3.3:77767715-77767734 | MS.gene049443:CDS | 35.0% |
| ! | TTCACAATTTTCGGAATCCT+AGG | - | chr3.3:77767351-77767370 | MS.gene049443:intron | 35.0% |
| ! | TTCATGGCTTTTATGTCACT+AGG | - | chr3.3:77767714-77767733 | MS.gene049443:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.3:77768010-77768029 | MS.gene049443:CDS | 35.0% |
| !! | GTAAACCATACTCTGAAACA+TGG | + | chr3.3:77768231-77768250 | None:intergenic | 35.0% |
| !!! | GATGAAGTTTTTGAGGTTTC+CGG | + | chr3.3:77767174-77767193 | None:intergenic | 35.0% |
| !!! | TTGGTTTGTTTTTGTTGTCC+AGG | - | chr3.3:77767240-77767259 | MS.gene049443:CDS | 35.0% |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.3:77767818-77767837 | MS.gene049443:CDS | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.3:77767888-77767907 | None:intergenic | 40.0% | |
| ACATAAACATGGCAAGGTCT+TGG | - | chr3.3:77768136-77768155 | MS.gene049443:CDS | 40.0% | |
| AGAACCAGTGTAAAGGACAT+AGG | + | chr3.3:77767433-77767452 | None:intergenic | 40.0% | |
| AGAGGAAAGAACCAGTGTAA+AGG | + | chr3.3:77767440-77767459 | None:intergenic | 40.0% | |
| AGATGCCATGTTTCAGAGTA+TGG | - | chr3.3:77768223-77768242 | MS.gene049443:CDS | 40.0% | |
| AGGAATTGTGGGAATTAGTG+TGG | - | chr3.3:77768061-77768080 | MS.gene049443:CDS | 40.0% | |
| ATAAAGGGATACAAAGTGCG+GGG | - | chr3.3:77768693-77768712 | MS.gene049443:CDS | 40.0% | |
| ATCCTGCGAAAAGAGTTAAG+TGG | + | chr3.3:77767404-77767423 | None:intergenic | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.3:77767999-77768018 | MS.gene049443:CDS | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.3:77768092-77768111 | MS.gene049443:CDS | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.3:77767993-77768012 | MS.gene049443:CDS | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.3:77767266-77767285 | MS.gene049443:CDS | 40.0% | |
| TATTATATGGGGTGGTGCAT+TGG | - | chr3.3:77768100-77768119 | MS.gene049443:CDS | 40.0% | |
| TCCTGCGAAAAGAGTTAAGT+GGG | + | chr3.3:77767403-77767422 | None:intergenic | 40.0% | |
| TGTGAAAGAGGACAATAACG+AGG | - | chr3.3:77768832-77768851 | MS.gene049443:CDS | 40.0% | |
| TTCCTTTACGATTCATGGGT+GGG | + | chr3.3:77767569-77767588 | None:intergenic | 40.0% | |
| ! | ACAATTTTCGGAATCCTAGG+TGG | - | chr3.3:77767354-77767373 | MS.gene049443:intron | 40.0% |
| ! | ATTAGTGTGGTTGCTGTTCT+TGG | - | chr3.3:77768074-77768093 | MS.gene049443:CDS | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.3:77767985-77768004 | MS.gene049443:CDS | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.3:77767984-77768003 | MS.gene049443:CDS | 40.0% |
| ! | TGGCAAGGTCTTGGATTTTA+AGG | - | chr3.3:77768145-77768164 | MS.gene049443:CDS | 40.0% |
| ! | TTACTGGTCTATTGGAGCAT+TGG | - | chr3.3:77768247-77768266 | MS.gene049443:CDS | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.3:77768273-77768292 | MS.gene049443:CDS | 40.0% |
| !! | CAAGCTTTTGCTGTAGTTTC+CGG | - | chr3.3:77767480-77767499 | MS.gene049443:intron | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.3:77768152-77768171 | MS.gene049443:CDS | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.3:77767606-77767625 | MS.gene049443:intron | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.3:77767615-77767634 | MS.gene049443:intron | 40.0% |
| AATGCTCTTTCAGGAATGGG+TGG | - | chr3.3:77767270-77767289 | MS.gene049443:CDS | 45.0% | |
| ACCAGTGTAAAGGACATAGG+AGG | + | chr3.3:77767430-77767449 | None:intergenic | 45.0% | |
| CAAGCTGCTACGGTTAATGA+TGG | - | chr3.3:77767678-77767697 | MS.gene049443:intron | 45.0% | |
| CATCATTAACCGTAGCAGCT+TGG | + | chr3.3:77767680-77767699 | None:intergenic | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+GGG | + | chr3.3:77767402-77767421 | None:intergenic | 45.0% | |
| GGCATGTTCAATGCTCTTTC+AGG | - | chr3.3:77767261-77767280 | MS.gene049443:CDS | 45.0% | |
| GGTGGCATCTATAACATCCT+CGG | - | chr3.3:77767375-77767394 | MS.gene049443:intron | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.3:77767570-77767589 | None:intergenic | 45.0% | |
| TAAAGGGATACAAAGTGCGG+GGG | - | chr3.3:77768694-77768713 | MS.gene049443:CDS | 45.0% | |
| TACCCACCCATGAATCGTAA+AGG | - | chr3.3:77767564-77767583 | MS.gene049443:intron | 45.0% | |
| TCCTCCTATGTCCTTTACAC+TGG | - | chr3.3:77767426-77767445 | MS.gene049443:intron | 45.0% | |
| TGTGAAGCTTGTGTAGAGTG+CGG | + | chr3.3:77767337-77767356 | None:intergenic | 45.0% | |
| TGTTATAGATGCCACCACCT+AGG | + | chr3.3:77767371-77767390 | None:intergenic | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.3:77767874-77767893 | MS.gene049443:CDS | 45.0% | |
| TTGGACTTACACAGGTACAC+AGG | - | chr3.3:77768665-77768684 | MS.gene049443:CDS | 45.0% | |
| ! | ATTTTCGGAATCCTAGGTGG+TGG | - | chr3.3:77767357-77767376 | MS.gene049443:intron | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.3:77767618-77767637 | MS.gene049443:intron | 45.0% |
| !! | GAAAGAGCATTGAACATGCC+TGG | + | chr3.3:77767261-77767280 | None:intergenic | 45.0% |
| !!! | GAAGTTTTTGAGGTTTCCGG+TGG | + | chr3.3:77767171-77767190 | None:intergenic | 45.0% |
| !!! | GAGTCTGGTTCTGATTTTGC+TGG | - | chr3.3:77768167-77768186 | MS.gene049443:CDS | 45.0% |
| !!! | ATTAAAAAAATATTATGTTT+TGG | + | chr3.3:77768423-77768442 | None:intergenic | 5.0% |
| AAAGAGTTAAGTGGGGTCCG+AGG | + | chr3.3:77767395-77767414 | None:intergenic | 50.0% | |
| AGAATCAGCCACTCAACCAC+CGG | - | chr3.3:77767152-77767171 | MS.gene049443:CDS | 50.0% | |
| GCATCGGAGCTGGACTATTA+TGG | - | chr3.3:77767514-77767533 | MS.gene049443:intron | 50.0% | |
| GCTTGTGTAGAGTGCGGTTA+AGG | + | chr3.3:77767331-77767350 | None:intergenic | 50.0% | |
| ! | CCCCACTTAACTCTTTTCGC+AGG | - | chr3.3:77767399-77767418 | MS.gene049443:intron | 50.0% |
| ! | GGACTATTATGGAGTGCCCA+AGG | - | chr3.3:77767525-77767544 | MS.gene049443:intron | 50.0% |
| !! | GTAGTTTCCGGTGCTGTTCT+CGG | - | chr3.3:77767492-77767511 | MS.gene049443:intron | 50.0% |
| GCTCTTTCAGGAATGGGTGG+TGG | - | chr3.3:77767273-77767292 | MS.gene049443:CDS | 55.0% | |
| TGAGGTTTCCGGTGGTTGAG+TGG | + | chr3.3:77767163-77767182 | None:intergenic | 55.0% | |
| ! | CTTTCAGGAATGGGTGGTGG+TGG | - | chr3.3:77767276-77767295 | MS.gene049443:CDS | 55.0% |
| !! | GAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.3:77767322-77767341 | None:intergenic | 55.0% |
| TCCGATGCCGAGAACAGCAC+CGG | + | chr3.3:77767502-77767521 | None:intergenic | 60.0% | |
| TCGTGGCGACCAAGCTGCTA+CGG | - | chr3.3:77767668-77767687 | MS.gene049443:intron | 60.0% | |
| !! | TCCGGTGCTGTTCTCGGCAT+CGG | - | chr3.3:77767498-77767517 | MS.gene049443:intron | 60.0% |
| ! | GCTGTTCTCGGCATCGGAGC+TGG | - | chr3.3:77767504-77767523 | MS.gene049443:intron | 65.0% |
| GTGCGGGGGCTGCAGTTGCA+TGG | - | chr3.3:77768708-77768727 | MS.gene049443:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77767129 | 77768865 | 77767129 | ID=MS.gene049443 |
| chr3.3 | mRNA | 77767129 | 77768865 | 77767129 | ID=MS.gene049443.t1;Parent=MS.gene049443 |
| chr3.3 | exon | 77767700 | 77768865 | 77767700 | ID=MS.gene049443.t1.exon1;Parent=MS.gene049443.t1 |
| chr3.3 | CDS | 77767700 | 77768865 | 77767700 | ID=cds.MS.gene049443.t1;Parent=MS.gene049443.t1 |
| chr3.3 | exon | 77767129 | 77767315 | 77767129 | ID=MS.gene049443.t1.exon2;Parent=MS.gene049443.t1 |
| chr3.3 | CDS | 77767129 | 77767315 | 77767129 | ID=cds.MS.gene049443.t1;Parent=MS.gene049443.t1 |
| Gene Sequence |
| Protein sequence |
