Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06573.t1 | XP_003602432.1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 2.00E-246 | 861.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06573.t1 | Q56WD3 | 67.7 | 421 | 131 | 2 | 16 | 432 | 19 | 438 | 6.0e-167 | 588.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06573.t1 | G7J9P1 | 98.1 | 432 | 8 | 0 | 1 | 432 | 1 | 432 | 1.4e-246 | 861.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049443 | MS.gene06573 | 0.82423 | 9.03E-54 | -1.69E-46 |
| MS.gene053169 | MS.gene06573 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene06573 | 0.805069 | 1.59E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene06573 | 0.81155 | 6.62E-51 | -1.69E-46 |
| MS.gene057610 | MS.gene06573 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene06573 | 0.805358 | 1.39E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene06573 | 0.806995 | 6.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06573 | MS.gene06574 | PPI |
| MS.gene06573 | MS.gene049443 | PPI |
| MS.gene06573 | MS.gene049444 | PPI |
| MS.gene06573 | MS.gene013467 | PPI |
| MS.gene06573 | MS.gene013466 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06573.t1 | MTR_3g093290 | 98.000 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 0.0 | 907 |
| MS.gene06573.t1 | MTR_3g093270 | 93.987 | 449 | 26 | 1 | 3 | 450 | 2 | 450 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06573.t1 | AT1G18010 | 68.213 | 431 | 132 | 2 | 16 | 442 | 19 | 448 | 0.0 | 617 |
| MS.gene06573.t1 | AT1G18000 | 68.213 | 431 | 132 | 2 | 16 | 442 | 19 | 448 | 0.0 | 617 |
Find 95 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACAAATCATCCTTAT+TGG | 0.164299 | 3.2:-78381554 | MS.gene06573:CDS |
| GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3.2:-78381509 | MS.gene06573:CDS |
| CTGTTCTTGGATCTATTATA+TGG | 0.213344 | 3.2:-78380683 | MS.gene06573:CDS |
| ATTAGTGTGGTTGCTGTTCT+TGG | 0.242665 | 3.2:-78380696 | MS.gene06573:CDS |
| AGATGCCATGTTTCAGAGTA+TGG | 0.258685 | 3.2:-78380547 | MS.gene06573:CDS |
| TGTTTCAGAGTATGGTTTAC+TGG | 0.266519 | 3.2:-78380539 | MS.gene06573:CDS |
| TTTCACAAATCATCCTTATT+GGG | 0.293770 | 3.2:-78381553 | MS.gene06573:CDS |
| GCATCGGAGCTGGACTATTA+TGG | 0.301187 | 3.2:-78381256 | MS.gene06573:CDS |
| GTTAATGATGGAACTTATAT+AGG | 0.307736 | 3.2:-78381080 | MS.gene06573:CDS |
| TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3.2:-78381155 | MS.gene06573:CDS |
| CGATTGTAATTAAGAATAAA+AGG | 0.315237 | 3.2:+78381122 | None:intergenic |
| GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3.2:+78381199 | None:intergenic |
| TGTTCTTGGATCTATTATAT+GGG | 0.338310 | 3.2:-78380682 | MS.gene06573:CDS |
| TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3.2:-78381072 | MS.gene06573:CDS |
| AGGTACACAGGATTCTATAA+AGG | 0.355926 | 3.2:-78380093 | MS.gene06573:CDS |
| AGTATGGTTTACTGGTCTAT+TGG | 0.363404 | 3.2:-78380531 | MS.gene06573:CDS |
| AATTGGGATTGGTTACACTA+TGG | 0.364274 | 3.2:-78380760 | MS.gene06573:CDS |
| GCTGTTCTCGGCATCGGAGC+TGG | 0.372968 | 3.2:-78381266 | MS.gene06573:CDS |
| ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3.2:-78380634 | MS.gene06573:CDS |
| TATTGGGGAGCACAAATGAT+AGG | 0.383645 | 3.2:-78380786 | MS.gene06573:CDS |
| TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3.2:-78380926 | MS.gene06573:CDS |
| TTCACAATCAACTGTGTCAT+TGG | 0.386175 | 3.2:+78380015 | None:intergenic |
| TCCGGTGCTGTTCTCGGCAT+CGG | 0.396725 | 3.2:-78381272 | MS.gene06573:CDS |
| TTCAATGCTCTTTCAGGAAT+GGG | 0.404295 | 3.2:-78381503 | MS.gene06573:CDS |
| TGACACAGTTGATTGTGAAT+TGG | 0.408150 | 3.2:-78380011 | MS.gene06573:CDS |
| GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3.2:-78380777 | MS.gene06573:CDS |
| GCTTGTGTAGAGTGCGGTTA+AGG | 0.415646 | 3.2:+78381442 | None:intergenic |
| GTAGTTTCCGGTGCTGTTCT+CGG | 0.424731 | 3.2:-78381278 | MS.gene06573:CDS |
| TTCTCATGATTCCTGCAGCT+TGG | 0.429163 | 3.2:-78380896 | MS.gene06573:CDS |
| TAGAAAGAAAAGAGGAATTG+TGG | 0.430494 | 3.2:-78380721 | MS.gene06573:CDS |
| TTACTGGTCTATTGGAGCAT+TGG | 0.434243 | 3.2:-78380523 | MS.gene06573:CDS |
| CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3.2:-78380776 | MS.gene06573:CDS |
| TTTAAGAGTAGAAAGAAAAG+AGG | 0.440838 | 3.2:-78380729 | MS.gene06573:CDS |
| AGAAAGAAAAGAGGAATTGT+GGG | 0.444597 | 3.2:-78380720 | MS.gene06573:CDS |
| GACACAGTTGATTGTGAATT+GGG | 0.445991 | 3.2:-78380010 | MS.gene06573:CDS |
| ACTAAGCTATCCGTTATTGT+TGG | 0.457774 | 3.2:-78379977 | MS.gene06573:CDS |
| GGTACACAGGATTCTATAAA+GGG | 0.462985 | 3.2:-78380092 | MS.gene06573:CDS |
| CTTTCAGGAATGGGTGGTGG+TGG | 0.463947 | 3.2:-78381494 | MS.gene06573:CDS |
| AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3.2:-78381002 | MS.gene06573:CDS |
| TCCTCCTATGTCCTTTACAC+TGG | 0.471720 | 3.2:-78381344 | MS.gene06573:CDS |
| TATTATATGGGGTGGTGCAT+TGG | 0.473668 | 3.2:-78380670 | MS.gene06573:CDS |
| GTTCAATGCTCTTTCAGGAA+TGG | 0.477707 | 3.2:-78381504 | MS.gene06573:CDS |
| AGATGTCATAATAGCACCTT+GGG | 0.481690 | 3.2:+78381229 | None:intergenic |
| ATCATTAAAACCAACAATAA+CGG | 0.482912 | 3.2:+78379967 | None:intergenic |
| ACAAATCATCCTTATTGGGT+TGG | 0.488006 | 3.2:-78381549 | MS.gene06573:CDS |
| ATGATAGGGTCAATTGGGAT+TGG | 0.495144 | 3.2:-78380771 | MS.gene06573:CDS |
| AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3.2:-78381152 | MS.gene06573:CDS |
| GAAAGAGCATTGAACATGCC+TGG | 0.498347 | 3.2:+78381512 | None:intergenic |
| ATAAGGATGATTTGTGAAAG+AGG | 0.505507 | 3.2:+78381557 | None:intergenic |
| GAGTGCGGTTAAGGCGTTGT+TGG | 0.510267 | 3.2:+78381451 | None:intergenic |
| TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3.2:+78381200 | None:intergenic |
| TTCCTTTACGATTCATGGGT+GGG | 0.515970 | 3.2:+78381204 | None:intergenic |
| GCTCTTTCAGGAATGGGTGG+TGG | 0.525680 | 3.2:-78381497 | MS.gene06573:CDS |
| AGAGGAAAGAACCAGTGTAA+AGG | 0.529052 | 3.2:+78381333 | None:intergenic |
| TCCGATGCCGAGAACAGCAC+CGG | 0.530799 | 3.2:+78381271 | None:intergenic |
| ATTGGGGAGCACAAATGATA+GGG | 0.533554 | 3.2:-78380785 | MS.gene06573:CDS |
| CATCATTAACAGTAGCAGCT+TGG | 0.533655 | 3.2:+78381093 | None:intergenic |
| GTTGTTTATGATTGTAGTAG+AGG | 0.539382 | 3.2:+78381315 | None:intergenic |
| ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3.2:-78380497 | MS.gene06573:intron |
| ACCTGCGAAAAGAGTTAAGT+GGG | 0.545077 | 3.2:+78381370 | None:intergenic |
| TTTATTCTTAATTACAATCG+TGG | 0.549060 | 3.2:-78381119 | MS.gene06573:CDS |
| CAAGCTGCTACTGTTAATGA+TGG | 0.549832 | 3.2:-78381092 | MS.gene06573:CDS |
| TATAAAGGGATACAAAGTGC+GGG | 0.551438 | 3.2:-78380078 | MS.gene06573:CDS |
| TACCCACCCATGAATCGTAA+AGG | 0.557859 | 3.2:-78381206 | MS.gene06573:CDS |
| CAATTTAGTTTGAGAACAAG+AGG | 0.558289 | 3.2:-78380825 | MS.gene06573:CDS |
| TGTTCAACGACACCACCCAT+TGG | 0.559220 | 3.2:+78381644 | None:intergenic |
| TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3.2:+78381008 | None:intergenic |
| GTTCCTTTACGATTCATGGG+TGG | 0.571188 | 3.2:+78381203 | None:intergenic |
| GTTCTTGGATCTATTATATG+GGG | 0.579371 | 3.2:-78380681 | MS.gene06573:CDS |
| AGAACCAGTGTAAAGGACAT+AGG | 0.581796 | 3.2:+78381340 | None:intergenic |
| AACCTGCGAAAAGAGTTAAG+TGG | 0.585770 | 3.2:+78381369 | None:intergenic |
| CTTGGATCTATTATATGGGG+TGG | 0.589106 | 3.2:-78380678 | MS.gene06573:CDS |
| AATGCTCTTTCAGGAATGGG+TGG | 0.595210 | 3.2:-78381500 | MS.gene06573:CDS |
| AAATTACTAGACCAAGCTGC+AGG | 0.599898 | 3.2:+78380885 | None:intergenic |
| AAGATGTCATAATAGCACCT+TGG | 0.600718 | 3.2:+78381228 | None:intergenic |
| GATTAAACATAAACATGGCA+AGG | 0.600741 | 3.2:-78380640 | MS.gene06573:CDS |
| TGAGGTTTCCGGTGGTTGAG+TGG | 0.602501 | 3.2:+78381610 | None:intergenic |
| AGAATCAGCCACTCAACCAC+CGG | 0.603694 | 3.2:-78381618 | MS.gene06573:CDS |
| GGTGGCATCTATAACATCCT+CGG | 0.603879 | 3.2:-78381395 | MS.gene06573:CDS |
| TGTTATAGATGCCACCACCT+AGG | 0.620884 | 3.2:+78381402 | None:intergenic |
| GGACTATTATGGAGTGCCCA+AGG | 0.624792 | 3.2:-78381245 | MS.gene06573:CDS |
| TTGGACTTACACAGGTACAC+AGG | 0.625881 | 3.2:-78380105 | MS.gene06573:intron |
| AGGAATTGTGGGAATTAGTG+TGG | 0.626228 | 3.2:-78380709 | MS.gene06573:CDS |
| AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3.2:-78380952 | MS.gene06573:CDS |
| ATAAAGGGATACAAAGTGCG+GGG | 0.639763 | 3.2:-78380077 | MS.gene06573:CDS |
| ACCAGTGTAAAGGACATAGG+AGG | 0.645176 | 3.2:+78381343 | None:intergenic |
| AATTTAGTTTGAGAACAAGA+GGG | 0.657205 | 3.2:-78380824 | MS.gene06573:CDS |
| AATCAGATTAAACATAAACA+TGG | 0.664350 | 3.2:-78380645 | MS.gene06573:CDS |
| AAAGAGTTAAGTGGGGTCCG+AGG | 0.668411 | 3.2:+78381378 | None:intergenic |
| CTATAAAGGGATACAAAGTG+CGG | 0.672233 | 3.2:-78380079 | MS.gene06573:CDS |
| GTAAACCATACTCTGAAACA+TGG | 0.672850 | 3.2:+78380542 | None:intergenic |
| TAAAGGGATACAAAGTGCGG+GGG | 0.692575 | 3.2:-78380076 | MS.gene06573:CDS |
| TGTGAAGCTTGTGTAGAGTG+CGG | 0.751066 | 3.2:+78381436 | None:intergenic |
| CCTGCGAAAAGAGTTAAGTG+GGG | 0.759382 | 3.2:+78381371 | None:intergenic |
| TGTGAAAGAGGACAATAACG+AGG | 0.786049 | 3.2:-78379938 | MS.gene06573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAATACAAAACAAA+AGG | + | chr3.2:78380992-78381011 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTATTTTTCTTTT+GGG | - | chr3.2:78380993-78381012 | MS.gene06573:CDS | 15.0% |
| !!! | TTTGTTTTGTATTTTTCTTT+TGG | - | chr3.2:78380992-78381011 | MS.gene06573:CDS | 15.0% |
| !! | AATCAGATTAAACATAAACA+TGG | - | chr3.2:78380923-78380942 | MS.gene06573:CDS | 20.0% |
| !! | AGAAACTTCAAGAAAATATT+TGG | - | chr3.2:78381248-78381267 | MS.gene06573:CDS | 20.0% |
| !! | ATCATTAAAACCAACAATAA+CGG | + | chr3.2:78381604-78381623 | None:intergenic | 20.0% |
| !! | CGATTGTAATTAAGAATAAA+AGG | + | chr3.2:78380449-78380468 | None:intergenic | 20.0% |
| !! | TTCTTAAATTGTTCTACAAT+TGG | - | chr3.2:78380642-78380661 | MS.gene06573:CDS | 20.0% |
| !! | TTTATTCTTAATTACAATCG+TGG | - | chr3.2:78380449-78380468 | MS.gene06573:intron | 20.0% |
| !!! | ATTGTTGGTTTTAATGATTT+TGG | - | chr3.2:78381606-78381625 | MS.gene06573:CDS | 20.0% |
| !!! | TAATTTGTAGTTTTAGTGAT+TGG | - | chr3.2:78381371-78381390 | MS.gene06573:CDS | 20.0% |
| ! | AATAATCCACCAAAAAATAC+TGG | + | chr3.2:78381314-78381333 | None:intergenic | 25.0% |
| ! | ATTTCCAAATTTCAACTATC+AGG | + | chr3.2:78381415-78381434 | None:intergenic | 25.0% |
| ! | TGTTCTTGGATCTATTATAT+GGG | - | chr3.2:78380886-78380905 | MS.gene06573:CDS | 25.0% |
| ! | TTAACTATTCCATTTGTTCT+TGG | - | chr3.2:78381130-78381149 | MS.gene06573:CDS | 25.0% |
| ! | TTTAAGAGTAGAAAGAAAAG+AGG | - | chr3.2:78380839-78380858 | MS.gene06573:CDS | 25.0% |
| ! | TTTCACAAATCATCCTTATT+GGG | - | chr3.2:78380015-78380034 | MS.gene06573:CDS | 25.0% |
| ! | TTTCCAAATTTCAACTATCA+GGG | + | chr3.2:78381414-78381433 | None:intergenic | 25.0% |
| !! | GAACTTACATTTCAATTTTC+TGG | - | chr3.2:78380384-78380403 | MS.gene06573:intron | 25.0% |
| !! | GTTAATGATGGAACTTATAT+AGG | - | chr3.2:78380488-78380507 | MS.gene06573:intron | 25.0% |
| !!! | AATTTAGTTTGAGAACAAGA+GGG | - | chr3.2:78380744-78380763 | MS.gene06573:CDS | 25.0% |
| !!! | GTTGAACAATGTGTTTTATT+GGG | - | chr3.2:78380766-78380785 | MS.gene06573:CDS | 25.0% |
| !!! | TAGTATCAACCAGTATTTTT+TGG | - | chr3.2:78381302-78381321 | MS.gene06573:CDS | 25.0% |
| !!! | TTGAACAATGTGTTTTATTG+GGG | - | chr3.2:78380767-78380786 | MS.gene06573:CDS | 25.0% |
| AAAAACAAACCAACCCAATA+AGG | + | chr3.2:78380031-78380050 | None:intergenic | 30.0% | |
| AAAATGCAACCAAGAACAAA+TGG | + | chr3.2:78381142-78381161 | None:intergenic | 30.0% | |
| AGAAAGAAAAGAGGAATTGT+GGG | - | chr3.2:78380848-78380867 | MS.gene06573:CDS | 30.0% | |
| AGTAAAGTTATTCGTGATGA+TGG | - | chr3.2:78380566-78380585 | MS.gene06573:CDS | 30.0% | |
| CTGTTCTTGGATCTATTATA+TGG | - | chr3.2:78380885-78380904 | MS.gene06573:CDS | 30.0% | |
| CTTTCACAAATCATCCTTAT+TGG | - | chr3.2:78380014-78380033 | MS.gene06573:CDS | 30.0% | |
| GATTAAACATAAACATGGCA+AGG | - | chr3.2:78380928-78380947 | MS.gene06573:CDS | 30.0% | |
| GTTCTTGGATCTATTATATG+GGG | - | chr3.2:78380887-78380906 | MS.gene06573:CDS | 30.0% | |
| GTTGTTTATGATTGTAGTAG+AGG | + | chr3.2:78380256-78380275 | None:intergenic | 30.0% | |
| TAAGTTCCTTTACGATTCAT+GGG | + | chr3.2:78380371-78380390 | None:intergenic | 30.0% | |
| TAGAAAGAAAAGAGGAATTG+TGG | - | chr3.2:78380847-78380866 | MS.gene06573:CDS | 30.0% | |
| TATCCCTGATAGTTGAAATT+TGG | - | chr3.2:78381408-78381427 | MS.gene06573:CDS | 30.0% | |
| TGGAACTTATATAGGTTTCA+TGG | - | chr3.2:78380496-78380515 | MS.gene06573:intron | 30.0% | |
| TTAGTGATTGGCATTTCATT+TGG | - | chr3.2:78381383-78381402 | MS.gene06573:CDS | 30.0% | |
| ! | AAGAAGTGATGAAGTTTTTG+AGG | + | chr3.2:78379979-78379998 | None:intergenic | 30.0% |
| ! | ATAAGGATGATTTGTGAAAG+AGG | + | chr3.2:78380014-78380033 | None:intergenic | 30.0% |
| ! | GGTTGAACAATGTGTTTTAT+TGG | - | chr3.2:78380765-78380784 | MS.gene06573:CDS | 30.0% |
| ! | TACACAAGCTTCACAATTTT+CGG | - | chr3.2:78380140-78380159 | MS.gene06573:intron | 30.0% |
| !! | CAATTTAGTTTGAGAACAAG+AGG | - | chr3.2:78380743-78380762 | MS.gene06573:CDS | 30.0% |
| !!! | AATGATTTTGGTTGTGAAAG+AGG | - | chr3.2:78381618-78381637 | MS.gene06573:CDS | 30.0% |
| !!! | TATCAACCAGTATTTTTTGG+TGG | - | chr3.2:78381305-78381324 | MS.gene06573:CDS | 30.0% |
| !!! | TTCTGGAGTATTTTCAACAT+GGG | - | chr3.2:78380401-78380420 | MS.gene06573:intron | 30.0% |
| !!! | TTTCTGGAGTATTTTCAACA+TGG | - | chr3.2:78380400-78380419 | MS.gene06573:intron | 30.0% |
| AAGATGTCATAATAGCACCT+TGG | + | chr3.2:78380343-78380362 | None:intergenic | 35.0% | |
| ACAAATCATCCTTATTGGGT+TGG | - | chr3.2:78380019-78380038 | MS.gene06573:CDS | 35.0% | |
| ACTAAGCTATCCGTTATTGT+TGG | - | chr3.2:78381591-78381610 | MS.gene06573:CDS | 35.0% | |
| ACTAATGTTTGGACTTACAC+AGG | - | chr3.2:78381455-78381474 | MS.gene06573:CDS | 35.0% | |
| AGATGTCATAATAGCACCTT+GGG | + | chr3.2:78380342-78380361 | None:intergenic | 35.0% | |
| AGGTACACAGGATTCTATAA+AGG | - | chr3.2:78381475-78381494 | MS.gene06573:CDS | 35.0% | |
| CACAAATGATAGGGTCAATT+GGG | - | chr3.2:78380792-78380811 | MS.gene06573:CDS | 35.0% | |
| CTACTGCTAGTACTAATGTT+TGG | - | chr3.2:78381444-78381463 | MS.gene06573:CDS | 35.0% | |
| CTATAAAGGGATACAAAGTG+CGG | - | chr3.2:78381489-78381508 | MS.gene06573:CDS | 35.0% | |
| GACACAGTTGATTGTGAATT+GGG | - | chr3.2:78381558-78381577 | MS.gene06573:CDS | 35.0% | |
| GGTACACAGGATTCTATAAA+GGG | - | chr3.2:78381476-78381495 | MS.gene06573:CDS | 35.0% | |
| GTAAGTTCCTTTACGATTCA+TGG | + | chr3.2:78380372-78380391 | None:intergenic | 35.0% | |
| TATAAAGGGATACAAAGTGC+GGG | - | chr3.2:78381490-78381509 | MS.gene06573:CDS | 35.0% | |
| TCACGAATAACTTTACTAGC+AGG | + | chr3.2:78380563-78380582 | None:intergenic | 35.0% | |
| TGACACAGTTGATTGTGAAT+TGG | - | chr3.2:78381557-78381576 | MS.gene06573:CDS | 35.0% | |
| TGTTTCAGAGTATGGTTTAC+TGG | - | chr3.2:78381029-78381048 | MS.gene06573:CDS | 35.0% | |
| TTCAATGCTCTTTCAGGAAT+GGG | - | chr3.2:78380065-78380084 | MS.gene06573:CDS | 35.0% | |
| TTCACAATCAACTGTGTCAT+TGG | + | chr3.2:78381556-78381575 | None:intergenic | 35.0% | |
| ! | AGTATGGTTTACTGGTCTAT+TGG | - | chr3.2:78381037-78381056 | MS.gene06573:CDS | 35.0% |
| ! | TCATGGCTTTTATGTCACTA+GGG | - | chr3.2:78380513-78380532 | MS.gene06573:CDS | 35.0% |
| ! | TTCACAATTTTCGGAATCCT+AGG | - | chr3.2:78380149-78380168 | MS.gene06573:intron | 35.0% |
| ! | TTCATGGCTTTTATGTCACT+AGG | - | chr3.2:78380512-78380531 | MS.gene06573:CDS | 35.0% |
| !! | AATTGGGATTGGTTACACTA+TGG | - | chr3.2:78380808-78380827 | MS.gene06573:CDS | 35.0% |
| !! | GTAAACCATACTCTGAAACA+TGG | + | chr3.2:78381029-78381048 | None:intergenic | 35.0% |
| !!! | GATGAAGTTTTTGAGGTTTC+CGG | + | chr3.2:78379972-78379991 | None:intergenic | 35.0% |
| !!! | TTGGTTTGTTTTTGTTGTCC+AGG | - | chr3.2:78380038-78380057 | MS.gene06573:CDS | 35.0% |
| AAATGTTGCAACTGAGTGTG+TGG | - | chr3.2:78380616-78380635 | MS.gene06573:CDS | 40.0% | |
| AAATTACTAGACCAAGCTGC+AGG | + | chr3.2:78380686-78380705 | None:intergenic | 40.0% | |
| AACCTGCGAAAAGAGTTAAG+TGG | + | chr3.2:78380202-78380221 | None:intergenic | 40.0% | |
| ACATAAACATGGCAAGGTCT+TGG | - | chr3.2:78380934-78380953 | MS.gene06573:CDS | 40.0% | |
| ACCTGCGAAAAGAGTTAAGT+GGG | + | chr3.2:78380201-78380220 | None:intergenic | 40.0% | |
| AGAACCAGTGTAAAGGACAT+AGG | + | chr3.2:78380231-78380250 | None:intergenic | 40.0% | |
| AGAGGAAAGAACCAGTGTAA+AGG | + | chr3.2:78380238-78380257 | None:intergenic | 40.0% | |
| AGATGCCATGTTTCAGAGTA+TGG | - | chr3.2:78381021-78381040 | MS.gene06573:CDS | 40.0% | |
| AGGAATTGTGGGAATTAGTG+TGG | - | chr3.2:78380859-78380878 | MS.gene06573:CDS | 40.0% | |
| ATAAAGGGATACAAAGTGCG+GGG | - | chr3.2:78381491-78381510 | MS.gene06573:CDS | 40.0% | |
| ATGATAGGGTCAATTGGGAT+TGG | - | chr3.2:78380797-78380816 | MS.gene06573:CDS | 40.0% | |
| CAAGCTGCTACTGTTAATGA+TGG | - | chr3.2:78380476-78380495 | MS.gene06573:intron | 40.0% | |
| CATCATTAACAGTAGCAGCT+TGG | + | chr3.2:78380478-78380497 | None:intergenic | 40.0% | |
| CTTGGATCTATTATATGGGG+TGG | - | chr3.2:78380890-78380909 | MS.gene06573:CDS | 40.0% | |
| GCACAAATGATAGGGTCAAT+TGG | - | chr3.2:78380791-78380810 | MS.gene06573:CDS | 40.0% | |
| GTTCAATGCTCTTTCAGGAA+TGG | - | chr3.2:78380064-78380083 | MS.gene06573:CDS | 40.0% | |
| TATTATATGGGGTGGTGCAT+TGG | - | chr3.2:78380898-78380917 | MS.gene06573:CDS | 40.0% | |
| TGTGAAAGAGGACAATAACG+AGG | - | chr3.2:78381630-78381649 | MS.gene06573:CDS | 40.0% | |
| TTCCTTTACGATTCATGGGT+GGG | + | chr3.2:78380367-78380386 | None:intergenic | 40.0% | |
| ! | ACAATTTTCGGAATCCTAGG+TGG | - | chr3.2:78380152-78380171 | MS.gene06573:intron | 40.0% |
| ! | ATTAGTGTGGTTGCTGTTCT+TGG | - | chr3.2:78380872-78380891 | MS.gene06573:CDS | 40.0% |
| ! | ATTGGGGAGCACAAATGATA+GGG | - | chr3.2:78380783-78380802 | MS.gene06573:CDS | 40.0% |
| ! | TATTGGGGAGCACAAATGAT+AGG | - | chr3.2:78380782-78380801 | MS.gene06573:CDS | 40.0% |
| ! | TGGCAAGGTCTTGGATTTTA+AGG | - | chr3.2:78380943-78380962 | MS.gene06573:CDS | 40.0% |
| ! | TTACTGGTCTATTGGAGCAT+TGG | - | chr3.2:78381045-78381064 | MS.gene06573:CDS | 40.0% |
| !! | ATGACTCTGAAGTTCTTAGC+AGG | - | chr3.2:78381071-78381090 | MS.gene06573:CDS | 40.0% |
| !! | CAAGCTTTTGCTGTAGTTTC+CGG | - | chr3.2:78380278-78380297 | MS.gene06573:intron | 40.0% |
| !! | GTCTTGGATTTTAAGGAGTC+TGG | - | chr3.2:78380950-78380969 | MS.gene06573:CDS | 40.0% |
| !! | TGGAGTATTTTCAACATGGG+TGG | - | chr3.2:78380404-78380423 | MS.gene06573:intron | 40.0% |
| !! | TTCAACATGGGTGGTGTTAT+TGG | - | chr3.2:78380413-78380432 | MS.gene06573:intron | 40.0% |
| AATGCTCTTTCAGGAATGGG+TGG | - | chr3.2:78380068-78380087 | MS.gene06573:CDS | 45.0% | |
| ACCAGTGTAAAGGACATAGG+AGG | + | chr3.2:78380228-78380247 | None:intergenic | 45.0% | |
| CCTGCGAAAAGAGTTAAGTG+GGG | + | chr3.2:78380200-78380219 | None:intergenic | 45.0% | |
| GGCATGTTCAATGCTCTTTC+AGG | - | chr3.2:78380059-78380078 | MS.gene06573:CDS | 45.0% | |
| GGTGGCATCTATAACATCCT+CGG | - | chr3.2:78380173-78380192 | MS.gene06573:intron | 45.0% | |
| GTTCCTTTACGATTCATGGG+TGG | + | chr3.2:78380368-78380387 | None:intergenic | 45.0% | |
| TAAAGGGATACAAAGTGCGG+GGG | - | chr3.2:78381492-78381511 | MS.gene06573:CDS | 45.0% | |
| TACCCACCCATGAATCGTAA+AGG | - | chr3.2:78380362-78380381 | MS.gene06573:intron | 45.0% | |
| TCCTCCTATGTCCTTTACAC+TGG | - | chr3.2:78380224-78380243 | MS.gene06573:intron | 45.0% | |
| TGTGAAGCTTGTGTAGAGTG+CGG | + | chr3.2:78380135-78380154 | None:intergenic | 45.0% | |
| TGTTATAGATGCCACCACCT+AGG | + | chr3.2:78380169-78380188 | None:intergenic | 45.0% | |
| TTCTCATGATTCCTGCAGCT+TGG | - | chr3.2:78380672-78380691 | MS.gene06573:CDS | 45.0% | |
| TTGGACTTACACAGGTACAC+AGG | - | chr3.2:78381463-78381482 | MS.gene06573:CDS | 45.0% | |
| ! | ATTTTCGGAATCCTAGGTGG+TGG | - | chr3.2:78380155-78380174 | MS.gene06573:intron | 45.0% |
| !! | AACATGGGTGGTGTTATTGG+TGG | - | chr3.2:78380416-78380435 | MS.gene06573:intron | 45.0% |
| !! | GAAAGAGCATTGAACATGCC+TGG | + | chr3.2:78380059-78380078 | None:intergenic | 45.0% |
| !!! | GAAGTTTTTGAGGTTTCCGG+TGG | + | chr3.2:78379969-78379988 | None:intergenic | 45.0% |
| !!! | GAGTCTGGTTCTGATTTTGC+TGG | - | chr3.2:78380965-78380984 | MS.gene06573:CDS | 45.0% |
| !!! | ATTAAAAAAATATTATGTTT+TGG | + | chr3.2:78381221-78381240 | None:intergenic | 5.0% |
| AAAGAGTTAAGTGGGGTCCG+AGG | + | chr3.2:78380193-78380212 | None:intergenic | 50.0% | |
| AGAATCAGCCACTCAACCAC+CGG | - | chr3.2:78379950-78379969 | MS.gene06573:CDS | 50.0% | |
| GCATCGGAGCTGGACTATTA+TGG | - | chr3.2:78380312-78380331 | MS.gene06573:intron | 50.0% | |
| GCTTGTGTAGAGTGCGGTTA+AGG | + | chr3.2:78380129-78380148 | None:intergenic | 50.0% | |
| ! | CCCCACTTAACTCTTTTCGC+AGG | - | chr3.2:78380197-78380216 | MS.gene06573:intron | 50.0% |
| ! | GGACTATTATGGAGTGCCCA+AGG | - | chr3.2:78380323-78380342 | MS.gene06573:intron | 50.0% |
| !! | GTAGTTTCCGGTGCTGTTCT+CGG | - | chr3.2:78380290-78380309 | MS.gene06573:intron | 50.0% |
| GCTCTTTCAGGAATGGGTGG+TGG | - | chr3.2:78380071-78380090 | MS.gene06573:CDS | 55.0% | |
| TGAGGTTTCCGGTGGTTGAG+TGG | + | chr3.2:78379961-78379980 | None:intergenic | 55.0% | |
| ! | CTTTCAGGAATGGGTGGTGG+TGG | - | chr3.2:78380074-78380093 | MS.gene06573:CDS | 55.0% |
| !! | GAGTGCGGTTAAGGCGTTGT+TGG | + | chr3.2:78380120-78380139 | None:intergenic | 55.0% |
| TCCGATGCCGAGAACAGCAC+CGG | + | chr3.2:78380300-78380319 | None:intergenic | 60.0% | |
| !! | TCCGGTGCTGTTCTCGGCAT+CGG | - | chr3.2:78380296-78380315 | MS.gene06573:intron | 60.0% |
| ! | GCTGTTCTCGGCATCGGAGC+TGG | - | chr3.2:78380302-78380321 | MS.gene06573:intron | 65.0% |
| GTGCGGGGGCTGCAGTTGCA+TGG | - | chr3.2:78381506-78381525 | MS.gene06573:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78379927 | 78381663 | 78379927 | ID=MS.gene06573 |
| chr3.2 | mRNA | 78379927 | 78381663 | 78379927 | ID=MS.gene06573.t1;Parent=MS.gene06573 |
| chr3.2 | exon | 78380498 | 78381663 | 78380498 | ID=MS.gene06573.t1.exon1;Parent=MS.gene06573.t1 |
| chr3.2 | CDS | 78380498 | 78381663 | 78380498 | ID=cds.MS.gene06573.t1;Parent=MS.gene06573.t1 |
| chr3.2 | exon | 78379927 | 78380113 | 78379927 | ID=MS.gene06573.t1.exon2;Parent=MS.gene06573.t1 |
| chr3.2 | CDS | 78379927 | 78380113 | 78379927 | ID=cds.MS.gene06573.t1;Parent=MS.gene06573.t1 |
| Gene Sequence |
| Protein sequence |
