Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013838.t1 | XP_003602014.1 | 80.3 | 284 | 34 | 1 | 1 | 262 | 1 | 284 | 2.40E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013838.t1 | G4N286 | 29.4 | 269 | 163 | 6 | 17 | 261 | 10 | 275 | 5.3e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013838.t1 | G7J4E2 | 80.3 | 284 | 34 | 1 | 1 | 262 | 1 | 284 | 1.8e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013841 | MS.gene013838 | PPI |
| MS.gene013838 | MS.gene052246 | PPI |
| MS.gene013838 | MS.gene015282 | PPI |
| MS.gene013838 | MS.gene09624 | PPI |
| MS.gene013838 | MS.gene013839 | PPI |
| MS.gene013838 | MS.gene013840 | PPI |
| MS.gene013838 | MS.gene43514 | PPI |
| MS.gene75444 | MS.gene013838 | PPI |
| MS.gene013838 | MS.gene045079 | PPI |
| MS.gene045080 | MS.gene013838 | PPI |
| MS.gene013838 | MS.gene052244 | PPI |
| MS.gene013838 | MS.gene75445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013838.t1 | MTR_3g087850 | 82.686 | 283 | 27 | 1 | 1 | 261 | 16 | 298 | 1.99e-172 | 477 |
| MS.gene013838.t1 | MTR_3g087860 | 84.859 | 284 | 21 | 1 | 1 | 262 | 1 | 284 | 5.87e-168 | 466 |
| MS.gene013838.t1 | MTR_4g097510 | 43.657 | 268 | 126 | 3 | 13 | 256 | 4 | 270 | 2.47e-72 | 223 |
| MS.gene013838.t1 | MTR_3g085740 | 30.928 | 194 | 105 | 4 | 8 | 173 | 72 | 264 | 2.74e-17 | 80.1 |
| MS.gene013838.t1 | MTR_8g096580 | 31.250 | 192 | 99 | 6 | 13 | 174 | 47 | 235 | 1.29e-14 | 72.8 |
| MS.gene013838.t1 | MTR_8g096620 | 29.119 | 261 | 140 | 11 | 15 | 241 | 49 | 298 | 1.30e-13 | 70.1 |
| MS.gene013838.t1 | MTR_4g052320 | 30.366 | 191 | 102 | 7 | 4 | 166 | 2 | 189 | 3.53e-12 | 65.1 |
| MS.gene013838.t1 | MTR_4g052300 | 31.111 | 180 | 94 | 6 | 15 | 166 | 12 | 189 | 5.01e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013838.t1 | AT5G65205 | 60.886 | 271 | 84 | 1 | 11 | 259 | 6 | 276 | 2.09e-124 | 355 |
| MS.gene013838.t1 | AT5G10050 | 61.397 | 272 | 83 | 1 | 11 | 260 | 5 | 276 | 3.99e-124 | 354 |
| MS.gene013838.t1 | AT5G50600 | 28.723 | 188 | 102 | 5 | 15 | 173 | 49 | 233 | 1.13e-14 | 73.2 |
| MS.gene013838.t1 | AT5G50700 | 28.723 | 188 | 102 | 5 | 15 | 173 | 49 | 233 | 1.13e-14 | 73.2 |
| MS.gene013838.t1 | AT1G24360 | 31.313 | 198 | 99 | 6 | 8 | 173 | 71 | 263 | 1.58e-14 | 72.4 |
| MS.gene013838.t1 | AT3G03330 | 25.746 | 268 | 143 | 6 | 15 | 248 | 45 | 290 | 7.35e-14 | 70.5 |
| MS.gene013838.t1 | AT3G55310 | 31.818 | 198 | 100 | 7 | 10 | 173 | 16 | 212 | 1.22e-13 | 69.7 |
| MS.gene013838.t1 | AT3G55290 | 30.303 | 198 | 103 | 7 | 10 | 173 | 17 | 213 | 7.80e-13 | 67.4 |
| MS.gene013838.t1 | AT3G55290 | 30.303 | 198 | 103 | 7 | 10 | 173 | 16 | 212 | 8.04e-13 | 67.4 |
| MS.gene013838.t1 | AT1G10310 | 29.902 | 204 | 108 | 6 | 16 | 187 | 20 | 220 | 1.50e-12 | 65.9 |
| MS.gene013838.t1 | AT5G50690 | 30.332 | 211 | 113 | 9 | 15 | 196 | 49 | 254 | 3.00e-12 | 65.9 |
| MS.gene013838.t1 | AT5G50590 | 30.332 | 211 | 113 | 9 | 15 | 196 | 49 | 254 | 3.00e-12 | 65.9 |
| MS.gene013838.t1 | AT5G50690 | 30.890 | 191 | 98 | 8 | 15 | 176 | 49 | 234 | 8.74e-12 | 63.9 |
| MS.gene013838.t1 | AT5G50590 | 30.890 | 191 | 98 | 8 | 15 | 176 | 49 | 234 | 8.74e-12 | 63.9 |
| MS.gene013838.t1 | AT3G47360 | 26.768 | 198 | 113 | 6 | 5 | 173 | 39 | 233 | 1.11e-11 | 64.3 |
Find 67 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTGGAACTTGGAAATTT+TGG | 0.076726 | 3.1:-70716941 | MS.gene013838:CDS |
| AGTTCTTGAAGAAAGAATTT+AGG | 0.187004 | 3.1:+70719618 | None:intergenic |
| AATACTGTTCTAGATAAATT+TGG | 0.254759 | 3.1:-70719558 | MS.gene013838:CDS |
| ATGCTTTGACAGATACATTA+AGG | 0.281542 | 3.1:-70718695 | MS.gene013838:intron |
| GTTCTTGAAGAAAGAATTTA+GGG | 0.282188 | 3.1:+70719619 | None:intergenic |
| ACGTTCAACCATGGCGGATT+TGG | 0.307727 | 3.1:-70719649 | MS.gene013838:CDS |
| AAGTCAAATATTGGAAATTC+CGG | 0.338697 | 3.1:-70716884 | MS.gene013838:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3.1:-70718802 | MS.gene013838:CDS |
| AGTGTTGCTGGGTTGGCATC+TGG | 0.375364 | 3.1:-70718759 | MS.gene013838:CDS |
| CTCTAACACAGAGAGGTAAA+TGG | 0.378798 | 3.1:+70716657 | None:intergenic |
| CTCCGGCATGCGGTTGTAGA+TGG | 0.385536 | 3.1:+70716856 | None:intergenic |
| TCTCGGATTGCTGCTTCAAA+TGG | 0.389909 | 3.1:+70716818 | None:intergenic |
| GGAGCTGTGAAGTCAAATAT+TGG | 0.400907 | 3.1:-70716893 | MS.gene013838:CDS |
| GTTAACGTTGGAAGTGTTGC+TGG | 0.406103 | 3.1:-70718771 | MS.gene013838:CDS |
| CTGGGTTGGCATCTGGACCT+TGG | 0.422583 | 3.1:-70718752 | MS.gene013838:CDS |
| CAGCCATGACAGTAGAATAA+TGG | 0.425148 | 3.1:+70716687 | None:intergenic |
| GGTTGCAGCGGAGGAGGTAT+AGG | 0.425422 | 3.1:-70719732 | MS.gene013838:CDS |
| ATATTTGACTTCACAGCTCC+AGG | 0.429584 | 3.1:+70716896 | None:intergenic |
| CGTTTAGCAAACTCGTCTGT+AGG | 0.435097 | 3.1:+70716761 | None:intergenic |
| CCACCTGCATGGTTCTCATA+TGG | 0.458843 | 3.1:-70716710 | MS.gene013838:CDS |
| GCACCGTAGCTGCTGTCCTT+AGG | 0.465314 | 3.1:-70716739 | MS.gene013838:CDS |
| AACTCTGTTCACGCTTTCAT+CGG | 0.468082 | 3.1:+70719584 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+GGG | 0.475638 | 3.1:+70716762 | None:intergenic |
| CGTTGGAAGTGTTGCTGGGT+TGG | 0.478666 | 3.1:-70718766 | MS.gene013838:CDS |
| TCAACAAACAGATTGGAACT+TGG | 0.486654 | 3.1:-70716950 | MS.gene013838:intron |
| ATGCAGGTGGTTTCTTCCTA+AGG | 0.489801 | 3.1:+70716723 | None:intergenic |
| AAACCAGTGGTTCTCATCAC+AGG | 0.491991 | 3.1:-70719753 | MS.gene013838:CDS |
| TTGGCATCTGGACCTTGGAA+TGG | 0.498857 | 3.1:-70718747 | MS.gene013838:CDS |
| ATCACAGGTTGCAGCGGAGG+AGG | 0.503558 | 3.1:-70719738 | MS.gene013838:CDS |
| TTTGCAGCTGTTAGCTGCGA+AGG | 0.507590 | 3.1:+70719692 | None:intergenic |
| TAGTTCCTCACATGGCAACT+AGG | 0.516282 | 3.1:-70718809 | MS.gene013838:CDS |
| GCAAAGTGGTTGCAACCAGC+AGG | 0.517343 | 3.1:-70719674 | MS.gene013838:CDS |
| CTTCCTAAGGACAGCAGCTA+CGG | 0.519587 | 3.1:+70716736 | None:intergenic |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3.1:+70716865 | None:intergenic |
| CTCATCACAGGTTGCAGCGG+AGG | 0.528829 | 3.1:-70719741 | MS.gene013838:CDS |
| AACGCTGGTGTTCTTTGTGT+GGG | 0.556188 | 3.1:-70719513 | MS.gene013838:CDS |
| CATGGTTGAACGTGACCTGC+TGG | 0.557065 | 3.1:+70719659 | None:intergenic |
| TAACGCTGGTGTTCTTTGTG+TGG | 0.562477 | 3.1:-70719514 | MS.gene013838:CDS |
| CAACCTGTGATGAGAACCAC+TGG | 0.563963 | 3.1:+70719750 | None:intergenic |
| TGGCCATTATTCTACTGTCA+TGG | 0.570312 | 3.1:-70716690 | MS.gene013838:CDS |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3.1:+70718804 | None:intergenic |
| GAGAGAGGAACTTCAGCAAG+TGG | 0.573540 | 3.1:+70719489 | None:intergenic |
| CCAGGCTGTAGTTCCTCACA+TGG | 0.580243 | 3.1:-70718817 | MS.gene013838:intron |
| GAGAAAATAGAGCTCTCTCT+CGG | 0.580696 | 3.1:+70716801 | None:intergenic |
| CGCAGCTAACAGCTGCAAAG+TGG | 0.582001 | 3.1:-70719688 | MS.gene013838:CDS |
| TTAACGTTGGAAGTGTTGCT+GGG | 0.587244 | 3.1:-70718770 | MS.gene013838:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3.1:-70718801 | MS.gene013838:CDS |
| GATGTTGTGAATGTTCTCCC+TGG | 0.591417 | 3.1:-70716914 | MS.gene013838:CDS |
| GCACTGTAAGCACCATTCCA+AGG | 0.593829 | 3.1:+70718735 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3.1:-70718783 | MS.gene013838:CDS |
| TTTAGCAAACTCGTCTGTAG+GGG | 0.599552 | 3.1:+70716763 | None:intergenic |
| TATTTGACTTCACAGCTCCA+GGG | 0.603014 | 3.1:+70716897 | None:intergenic |
| TGGCCATATGAGAACCATGC+AGG | 0.604496 | 3.1:+70716707 | None:intergenic |
| GATGTTCTTGTAAATAACGC+TGG | 0.609735 | 3.1:-70719528 | MS.gene013838:CDS |
| AGCCATCTACAACCGCATGC+CGG | 0.618672 | 3.1:-70716858 | MS.gene013838:CDS |
| GGTTTGAATAGTTTCCACTC+CGG | 0.618933 | 3.1:+70716839 | None:intergenic |
| ATAGTTTCCACTCCGGCATG+CGG | 0.621048 | 3.1:+70716846 | None:intergenic |
| TTAGGAAGAAACCACCTGCA+TGG | 0.623601 | 3.1:-70716721 | MS.gene013838:CDS |
| TCAAGAAGATTCAAAACCAG+TGG | 0.624130 | 3.1:-70719766 | MS.gene013838:CDS |
| GTCTTGATCCAAATCCGCCA+TGG | 0.629951 | 3.1:+70719641 | None:intergenic |
| GTTCTCATCACAGGTTGCAG+CGG | 0.636969 | 3.1:-70719744 | MS.gene013838:CDS |
| AGAGAGGAACTTCAGCAAGT+GGG | 0.639603 | 3.1:+70719490 | None:intergenic |
| TCTACAACCGCATGCCGGAG+TGG | 0.644601 | 3.1:-70716853 | MS.gene013838:CDS |
| CAGCAGGTCACGTTCAACCA+TGG | 0.654260 | 3.1:-70719658 | MS.gene013838:CDS |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3.1:+70716650 | None:intergenic |
| CCATATGAGAACCATGCAGG+TGG | 0.696627 | 3.1:+70716710 | None:intergenic |
| CAGGTCACGTTCAACCATGG+CGG | 0.709328 | 3.1:-70719655 | MS.gene013838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAAATTTAAT+CGG | - | chr3.1:70717282-70717301 | MS.gene013838:intron | 10.0% |
| !! | AAGTTAATTGAGTTTATTAA+CGG | - | chr3.1:70718799-70718818 | MS.gene013838:CDS | 15.0% |
| !! | ACTATATTCATATTCATATT+AGG | - | chr3.1:70719302-70719321 | MS.gene013838:intron | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | - | chr3.1:70717510-70717529 | MS.gene013838:intron | 15.0% |
| !!! | TTTCAAACTTGTTTTAATTT+TGG | - | chr3.1:70717752-70717771 | MS.gene013838:intron | 15.0% |
| !! | AAGAACCAAAAAATACATTT+CGG | + | chr3.1:70718103-70718122 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAAAAGTCAATT+TGG | + | chr3.1:70719425-70719444 | None:intergenic | 20.0% |
| !! | GCAACTACAAAATTAAATAA+TGG | + | chr3.1:70719399-70719418 | None:intergenic | 20.0% |
| !! | TCATGCAATTACATTAAAAA+AGG | + | chr3.1:70718152-70718171 | None:intergenic | 20.0% |
| !!! | AATACTGTTCTAGATAAATT+TGG | - | chr3.1:70716856-70716875 | MS.gene013838:CDS | 20.0% |
| !!! | ATTGAAGTTTCTTTTGTTTT+GGG | + | chr3.1:70717406-70717425 | None:intergenic | 20.0% |
| !!! | TTAATTCTAGTTTTGTTTGT+TGG | - | chr3.1:70717075-70717094 | MS.gene013838:intron | 20.0% |
| !!! | TTTTTTTATGCAGTATACTT+TGG | + | chr3.1:70718578-70718597 | None:intergenic | 20.0% |
| ! | AAGTCAAATATTGGAAATTC+CGG | - | chr3.1:70719530-70719549 | MS.gene013838:CDS | 25.0% |
| ! | AATTGAGTTTATTAACGGTT+CGG | - | chr3.1:70718804-70718823 | MS.gene013838:CDS | 25.0% |
| ! | ACTATTTCAACAATTCAGTT+CGG | + | chr3.1:70717966-70717985 | None:intergenic | 25.0% |
| ! | ACTGAATTGTTGAAATAGTT+TGG | - | chr3.1:70717967-70717986 | MS.gene013838:intron | 25.0% |
| ! | AGATTTCTATAACTTCCATA+TGG | + | chr3.1:70717807-70717826 | None:intergenic | 25.0% |
| ! | AGTTCTTGAAGAAAGAATTT+AGG | + | chr3.1:70716799-70716818 | None:intergenic | 25.0% |
| ! | ATAGATTTCTACCTATTGAT+TGG | - | chr3.1:70718335-70718354 | MS.gene013838:intron | 25.0% |
| ! | ATCAAATTAACACATTGATC+CGG | + | chr3.1:70719031-70719050 | None:intergenic | 25.0% |
| ! | ATGAAGAAGAGAAAAGAAAA+GGG | - | chr3.1:70718416-70718435 | MS.gene013838:intron | 25.0% |
| ! | CTGAATTGTTGAAATAGTTT+GGG | - | chr3.1:70717968-70717987 | MS.gene013838:intron | 25.0% |
| ! | GTTCTTGAAGAAAGAATTTA+GGG | + | chr3.1:70716798-70716817 | None:intergenic | 25.0% |
| ! | TAACAACATGTAAGACATAA+AGG | + | chr3.1:70719441-70719460 | None:intergenic | 25.0% |
| ! | TATGAAGAAGAGAAAAGAAA+AGG | - | chr3.1:70718415-70718434 | MS.gene013838:intron | 25.0% |
| ! | TATTAGGTATTACAGTACTA+AGG | - | chr3.1:70719318-70719337 | MS.gene013838:intron | 25.0% |
| ! | TGAAATGAAATAGTTCATGA+TGG | - | chr3.1:70719135-70719154 | MS.gene013838:intron | 25.0% |
| ! | TGGAGTTCTTAATCTATATT+GGG | - | chr3.1:70718233-70718252 | MS.gene013838:intron | 25.0% |
| ! | TGTATTCAGTTCATTTATGT+TGG | - | chr3.1:70717375-70717394 | MS.gene013838:intron | 25.0% |
| ! | TTGGAGTTCTTAATCTATAT+TGG | - | chr3.1:70718232-70718251 | MS.gene013838:intron | 25.0% |
| ! | TTTGAATCAAATGAACCATA+TGG | - | chr3.1:70717789-70717808 | MS.gene013838:intron | 25.0% |
| !! | TACCTGTTTTCATGTTTAAT+TGG | - | chr3.1:70718290-70718309 | MS.gene013838:intron | 25.0% |
| !! | TCGGTTCAAAATATTGTTTT+TGG | + | chr3.1:70718084-70718103 | None:intergenic | 25.0% |
| !! | TTGGCTAAAAAAGAAGTATA+TGG | - | chr3.1:70718354-70718373 | MS.gene013838:intron | 25.0% |
| !! | TTTTCTTTTCTCTTCTTCAT+AGG | + | chr3.1:70718416-70718435 | None:intergenic | 25.0% |
| !!! | CATTGAAGTTTCTTTTGTTT+TGG | + | chr3.1:70717407-70717426 | None:intergenic | 25.0% |
| !!! | GTTATTTTCAACAAACAGAT+TGG | - | chr3.1:70719457-70719476 | MS.gene013838:intron | 25.0% |
| !!! | TTCTTTTGAAGAATGAGAAT+GGG | - | chr3.1:70717145-70717164 | MS.gene013838:intron | 25.0% |
| !!! | TTCTTTTTTAGCCAATCAAT+AGG | + | chr3.1:70718349-70718368 | None:intergenic | 25.0% |
| !!! | TTGAACCGAAATGTATTTTT+TGG | - | chr3.1:70718095-70718114 | MS.gene013838:intron | 25.0% |
| AACTTAAACCAGTGATTTCT+AGG | + | chr3.1:70718938-70718957 | None:intergenic | 30.0% | |
| ACGTTTGATACTAACGTATT+TGG | - | chr3.1:70716961-70716980 | MS.gene013838:intron | 30.0% | |
| ACTTAAACCAGTGATTTCTA+GGG | + | chr3.1:70718937-70718956 | None:intergenic | 30.0% | |
| ATCTATATTGGGCACAATAT+AGG | - | chr3.1:70718244-70718263 | MS.gene013838:intron | 30.0% | |
| ATGCTTTGACAGATACATTA+AGG | - | chr3.1:70717719-70717738 | MS.gene013838:intron | 30.0% | |
| ATGTCAATAGAAATCACTAG+GGG | - | chr3.1:70717908-70717927 | MS.gene013838:intron | 30.0% | |
| CATGTCAATAGAAATCACTA+GGG | - | chr3.1:70717907-70717926 | MS.gene013838:intron | 30.0% | |
| GGTAACCGTTATCAAAATAA+TGG | - | chr3.1:70718835-70718854 | MS.gene013838:intron | 30.0% | |
| GTCCAATTAAACATGAAAAC+AGG | + | chr3.1:70718295-70718314 | None:intergenic | 30.0% | |
| GTTGTTTACAAATGTTGTGA+TGG | - | chr3.1:70718197-70718216 | MS.gene013838:intron | 30.0% | |
| TACTAGTACCAAGTACAATT+GGG | - | chr3.1:70717469-70717488 | MS.gene013838:intron | 30.0% | |
| TAGAAACATGGTTAATGGTT+CGG | - | chr3.1:70718769-70718788 | MS.gene013838:CDS | 30.0% | |
| TCAGTTCATTTATGTTGGTA+TGG | - | chr3.1:70717380-70717399 | MS.gene013838:intron | 30.0% | |
| TCAGTTCGTAGGTAATAAAA+TGG | + | chr3.1:70718060-70718079 | None:intergenic | 30.0% | |
| TTACTAGTACCAAGTACAAT+TGG | - | chr3.1:70717468-70717487 | MS.gene013838:intron | 30.0% | |
| TTGATACTAACGTATTTGGT+TGG | - | chr3.1:70716965-70716984 | MS.gene013838:intron | 30.0% | |
| ! | AAATGTTGTGATGGAATTTG+AGG | - | chr3.1:70718206-70718225 | MS.gene013838:intron | 30.0% |
| ! | AGATTGGAACTTGGAAATTT+TGG | - | chr3.1:70719473-70719492 | MS.gene013838:intron | 30.0% |
| ! | TTGATGAAAGTGTAATCTAG+CGG | - | chr3.1:70719046-70719065 | MS.gene013838:intron | 30.0% |
| !! | ACTTTTTCTCTTTCAGACTT+GGG | - | chr3.1:70718501-70718520 | MS.gene013838:intron | 30.0% |
| !! | CCGTTATCAAAATAATGGAT+CGG | - | chr3.1:70718840-70718859 | MS.gene013838:intron | 30.0% |
| !! | GTTCTTTTGAAGAATGAGAA+TGG | - | chr3.1:70717144-70717163 | MS.gene013838:intron | 30.0% |
| !! | TACTCATAAAGTACTGTGTA+GGG | + | chr3.1:70719083-70719102 | None:intergenic | 30.0% |
| !! | TAGAGATTTTTGCTTTGTTG+TGG | - | chr3.1:70717838-70717857 | MS.gene013838:intron | 30.0% |
| !! | TGTTTAGAAGTATCAGATTG+AGG | - | chr3.1:70719269-70719288 | MS.gene013838:intron | 30.0% |
| !! | TTACTCATAAAGTACTGTGT+AGG | + | chr3.1:70719084-70719103 | None:intergenic | 30.0% |
| !!! | CCGATCCATTATTTTGATAA+CGG | + | chr3.1:70718843-70718862 | None:intergenic | 30.0% |
| !!! | TACTTTTTCTCTTTCAGACT+TGG | - | chr3.1:70718500-70718519 | MS.gene013838:intron | 30.0% |
| !!! | TGAAATGGTTCGGTTAATTT+TGG | - | chr3.1:70718875-70718894 | MS.gene013838:intron | 30.0% |
| !!! | TGTTTTTTGCAATGTTCACT+TGG | + | chr3.1:70719110-70719129 | None:intergenic | 30.0% |
| ACTGAACCAAACTTATGGTT+CGG | - | chr3.1:70718030-70718049 | MS.gene013838:intron | 35.0% | |
| AGAAGGAAACCTTGGTTTAA+CGG | - | chr3.1:70717867-70717886 | MS.gene013838:intron | 35.0% | |
| AGTACATGTTTAGTCCAGTT+CGG | + | chr3.1:70718644-70718663 | None:intergenic | 35.0% | |
| ATGGGTTTGATGCTCAAAAA+GGG | - | chr3.1:70717163-70717182 | MS.gene013838:intron | 35.0% | |
| CAAGAATTGGTGAAATGGTT+CGG | - | chr3.1:70718865-70718884 | MS.gene013838:intron | 35.0% | |
| CCATGTCAATAGAAATCACT+AGG | - | chr3.1:70717906-70717925 | MS.gene013838:intron | 35.0% | |
| CCTAGTGATTTCTATTGACA+TGG | + | chr3.1:70717909-70717928 | None:intergenic | 35.0% | |
| GAACCATTAACCATGTTTCT+AGG | + | chr3.1:70718770-70718789 | None:intergenic | 35.0% | |
| GAAGTTGAAAAGTAGTTGTC+TGG | - | chr3.1:70717101-70717120 | MS.gene013838:intron | 35.0% | |
| GATGCAACAATACACCATTT+GGG | - | chr3.1:70719354-70719373 | MS.gene013838:intron | 35.0% | |
| GATGTTCTTGTAAATAACGC+TGG | - | chr3.1:70716886-70716905 | MS.gene013838:CDS | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | - | chr3.1:70717481-70717500 | MS.gene013838:intron | 35.0% | |
| GTTTAGTCCTTGAAAGTGAA+AGG | + | chr3.1:70719239-70719258 | None:intergenic | 35.0% | |
| TATCAAACTGCCTAGAAACA+TGG | - | chr3.1:70718757-70718776 | MS.gene013838:CDS | 35.0% | |
| TCAACAAACAGATTGGAACT+TGG | - | chr3.1:70719464-70719483 | MS.gene013838:intron | 35.0% | |
| TCAAGAAGATTCAAAACCAG+TGG | - | chr3.1:70716648-70716667 | MS.gene013838:CDS | 35.0% | |
| TGTTTACACCCAATTGTACT+TGG | + | chr3.1:70717480-70717499 | None:intergenic | 35.0% | |
| TTAATTGGACTGTGCTTAGT+CGG | - | chr3.1:70718305-70718324 | MS.gene013838:intron | 35.0% | |
| TTAGATGCCTTTCACTTTCA+AGG | - | chr3.1:70719229-70719248 | MS.gene013838:intron | 35.0% | |
| ! | AATGGGTTTGATGCTCAAAA+AGG | - | chr3.1:70717162-70717181 | MS.gene013838:intron | 35.0% |
| ! | ACAATACACCATTTGGGATT+TGG | - | chr3.1:70719360-70719379 | MS.gene013838:intron | 35.0% |
| ! | ACCATAAGTTTGGTTCAGTT+CGG | + | chr3.1:70718029-70718048 | None:intergenic | 35.0% |
| ! | CGTTAGTATCAAACGTGTTT+TGG | + | chr3.1:70716957-70716976 | None:intergenic | 35.0% |
| ! | CTTAAACCAGTGATTTCTAG+GGG | + | chr3.1:70718936-70718955 | None:intergenic | 35.0% |
| ! | TAATGGATCGGTTCAAGAAT+TGG | - | chr3.1:70718852-70718871 | MS.gene013838:intron | 35.0% |
| ! | TCGAAGATTTTTGCAACACT+TGG | - | chr3.1:70718175-70718194 | MS.gene013838:intron | 35.0% |
| !! | AATTTTGGTCCAATTCGGTT+TGG | - | chr3.1:70718890-70718909 | MS.gene013838:intron | 35.0% |
| !! | AGTTTATTAACGGTTCGGTT+CGG | - | chr3.1:70718809-70718828 | MS.gene013838:CDS | 35.0% |
| !! | CGGTTAATTTTGGTCCAATT+CGG | - | chr3.1:70718885-70718904 | MS.gene013838:intron | 35.0% |
| !! | CTTTTAGAGATAGTCTGATC+CGG | - | chr3.1:70719009-70719028 | MS.gene013838:intron | 35.0% |
| !!! | AAAGTAGTTGTCTGGCTTTT+TGG | - | chr3.1:70717109-70717128 | MS.gene013838:intron | 35.0% |
| !!! | TTGTTTTTGGTTCAGTTCGT+AGG | + | chr3.1:70718071-70718090 | None:intergenic | 35.0% |
| AACCAAGAACCAAACCGAAT+TGG | + | chr3.1:70718902-70718921 | None:intergenic | 40.0% | |
| AACTCTGTTCACGCTTTCAT+CGG | + | chr3.1:70716833-70716852 | None:intergenic | 40.0% | |
| AAGCACAAATACTCGGATAC+TGG | + | chr3.1:70717313-70717332 | None:intergenic | 40.0% | |
| AAGTGTAATCTAGCGGAGTT+TGG | - | chr3.1:70719053-70719072 | MS.gene013838:intron | 40.0% | |
| ACCGAACTGAACCAAACTTA+TGG | - | chr3.1:70718025-70718044 | MS.gene013838:intron | 40.0% | |
| ACTGTAACACCGTTAAACCA+AGG | + | chr3.1:70717879-70717898 | None:intergenic | 40.0% | |
| AGAAAGTCTCTAACACAGAG+AGG | + | chr3.1:70719767-70719786 | None:intergenic | 40.0% | |
| ATATCACTCCATACATGTGC+AGG | - | chr3.1:70717559-70717578 | MS.gene013838:intron | 40.0% | |
| CAATAGAAATCACTAGGGGT+GGG | - | chr3.1:70717912-70717931 | MS.gene013838:intron | 40.0% | |
| CAGCCATGACAGTAGAATAA+TGG | + | chr3.1:70719730-70719749 | None:intergenic | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | - | chr3.1:70717631-70717650 | MS.gene013838:intron | 40.0% | |
| CCCTATGAAGCACAAATACT+CGG | + | chr3.1:70717320-70717339 | None:intergenic | 40.0% | |
| CCGAGTATTTGTGCTTCATA+GGG | - | chr3.1:70717317-70717336 | MS.gene013838:intron | 40.0% | |
| CGGTTCAAGAATTGGTGAAA+TGG | - | chr3.1:70718860-70718879 | MS.gene013838:intron | 40.0% | |
| CTCTAACACAGAGAGGTAAA+TGG | + | chr3.1:70719760-70719779 | None:intergenic | 40.0% | |
| CTGCCTAGAAACATGGTTAA+TGG | - | chr3.1:70718764-70718783 | MS.gene013838:CDS | 40.0% | |
| GAGAAAATAGAGCTCTCTCT+CGG | + | chr3.1:70719616-70719635 | None:intergenic | 40.0% | |
| GGAGCTGTGAAGTCAAATAT+TGG | - | chr3.1:70719521-70719540 | MS.gene013838:CDS | 40.0% | |
| GGATGCAACAATACACCATT+TGG | - | chr3.1:70719353-70719372 | MS.gene013838:intron | 40.0% | |
| GGTTAACCGAACCATAAGTT+TGG | + | chr3.1:70718039-70718058 | None:intergenic | 40.0% | |
| GGTTCGTTCCAAACCTTAAA+CGG | + | chr3.1:70718003-70718022 | None:intergenic | 40.0% | |
| GGTTTGAATAGTTTCCACTC+CGG | + | chr3.1:70719578-70719597 | None:intergenic | 40.0% | |
| GTTCCAAACCTTAAACGGTT+CGG | + | chr3.1:70717998-70718017 | None:intergenic | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+GGG | + | chr3.1:70719655-70719674 | None:intergenic | 40.0% | |
| TCAATAGAAATCACTAGGGG+TGG | - | chr3.1:70717911-70717930 | MS.gene013838:intron | 40.0% | |
| TCCGAGTATTTGTGCTTCAT+AGG | - | chr3.1:70717316-70717335 | MS.gene013838:intron | 40.0% | |
| TGGCCATTATTCTACTGTCA+TGG | - | chr3.1:70719724-70719743 | MS.gene013838:CDS | 40.0% | |
| TTGTTATGCTTACACCGAAC+TGG | - | chr3.1:70718627-70718646 | MS.gene013838:intron | 40.0% | |
| TTGTTGCATCCACCAAAACT+TGG | + | chr3.1:70719344-70719363 | None:intergenic | 40.0% | |
| TTTAGCAAACTCGTCTGTAG+GGG | + | chr3.1:70719654-70719673 | None:intergenic | 40.0% | |
| ! | AAACCGAACCGTTTAAGGTT+TGG | - | chr3.1:70717992-70718011 | MS.gene013838:intron | 40.0% |
| ! | AAGTTTGGTTCAGTTCGGTT+CGG | + | chr3.1:70718024-70718043 | None:intergenic | 40.0% |
| ! | ACACGCGTTCTGTTCATTTT+AGG | + | chr3.1:70718737-70718756 | None:intergenic | 40.0% |
| ! | ACAGTACTAAGGCCAAGTTT+TGG | - | chr3.1:70719329-70719348 | MS.gene013838:intron | 40.0% |
| ! | AGAGAGAGCTCTATTTTCTC+AGG | - | chr3.1:70719616-70719635 | MS.gene013838:CDS | 40.0% |
| ! | AGAGAGCTCTATTTTCTCAG+GGG | - | chr3.1:70719618-70719637 | MS.gene013838:CDS | 40.0% |
| ! | ATACACCATTTGGGATTTGG+TGG | - | chr3.1:70719363-70719382 | MS.gene013838:intron | 40.0% |
| ! | ATATTTGACTTCACAGCTCC+AGG | + | chr3.1:70719521-70719540 | None:intergenic | 40.0% |
| ! | GAGAGAGCTCTATTTTCTCA+GGG | - | chr3.1:70719617-70719636 | MS.gene013838:CDS | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | + | chr3.1:70719520-70719539 | None:intergenic | 40.0% |
| !! | TTAACGTTGGAAGTGTTGCT+GGG | - | chr3.1:70717644-70717663 | MS.gene013838:intron | 40.0% |
| AAACCAGTGGTTCTCATCAC+AGG | - | chr3.1:70716661-70716680 | MS.gene013838:CDS | 45.0% | |
| AACGCTGGTGTTCTTTGTGT+GGG | - | chr3.1:70716901-70716920 | MS.gene013838:CDS | 45.0% | |
| AGAGAGGAACTTCAGCAAGT+GGG | + | chr3.1:70716927-70716946 | None:intergenic | 45.0% | |
| ATGCAGGTGGTTTCTTCCTA+AGG | + | chr3.1:70719694-70719713 | None:intergenic | 45.0% | |
| ATGTGCAGGAACCATGAGAA+TGG | - | chr3.1:70717573-70717592 | MS.gene013838:intron | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | - | chr3.1:70717613-70717632 | MS.gene013838:intron | 45.0% | |
| CGTTTAGCAAACTCGTCTGT+AGG | + | chr3.1:70719656-70719675 | None:intergenic | 45.0% | |
| GATGTTGTGAATGTTCTCCC+TGG | - | chr3.1:70719500-70719519 | MS.gene013838:CDS | 45.0% | |
| GCGCAGACAATTCTGTTTGA+AGG | - | chr3.1:70717202-70717221 | MS.gene013838:intron | 45.0% | |
| GTATCAGATTGAGGCTCTAC+TGG | - | chr3.1:70719278-70719297 | MS.gene013838:intron | 45.0% | |
| GTCGAACACTGACACATGTT+GGG | + | chr3.1:70717240-70717259 | None:intergenic | 45.0% | |
| TAACGCTGGTGTTCTTTGTG+TGG | - | chr3.1:70716900-70716919 | MS.gene013838:CDS | 45.0% | |
| TAGTTCCTCACATGGCAACT+AGG | - | chr3.1:70717605-70717624 | MS.gene013838:intron | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | - | chr3.1:70717612-70717631 | MS.gene013838:intron | 45.0% | |
| TCATGGTTCCTGCACATGTA+TGG | + | chr3.1:70717570-70717589 | None:intergenic | 45.0% | |
| TGGGAAAACCGAACCGTTTA+AGG | - | chr3.1:70717987-70718006 | MS.gene013838:intron | 45.0% | |
| TGTCGAACACTGACACATGT+TGG | + | chr3.1:70717241-70717260 | None:intergenic | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | + | chr3.1:70717613-70717632 | None:intergenic | 45.0% | |
| TTAGGAAGAAACCACCTGCA+TGG | - | chr3.1:70719693-70719712 | MS.gene013838:CDS | 45.0% | |
| ! | AAACCAGTGATTTCTAGGGG+TGG | + | chr3.1:70718933-70718952 | None:intergenic | 45.0% |
| ! | AACCAGTGATTTCTAGGGGT+GGG | + | chr3.1:70718932-70718951 | None:intergenic | 45.0% |
| ! | CTTTGTTGTGGTGTACGAGA+AGG | - | chr3.1:70717850-70717869 | MS.gene013838:intron | 45.0% |
| ! | GTGATGGAATTTGAGGCACT+TGG | - | chr3.1:70718213-70718232 | MS.gene013838:intron | 45.0% |
| ! | TCTCGGATTGCTGCTTCAAA+TGG | + | chr3.1:70719599-70719618 | None:intergenic | 45.0% |
| !! | ATTAACGGTTCGGTTCGGTT+AGG | - | chr3.1:70718814-70718833 | MS.gene013838:CDS | 45.0% |
| !! | GTACTAAGGCCAAGTTTTGG+TGG | - | chr3.1:70719332-70719351 | MS.gene013838:intron | 45.0% |
| !! | GTCCAATTCGGTTTGGTTCT+TGG | - | chr3.1:70718897-70718916 | MS.gene013838:intron | 45.0% |
| !! | GTGTTTTGGATTGCAGAGAG+AGG | + | chr3.1:70716943-70716962 | None:intergenic | 45.0% |
| !! | GTTAACGTTGGAAGTGTTGC+TGG | - | chr3.1:70717643-70717662 | MS.gene013838:intron | 45.0% |
| AGGAACCATGAGAATGGTCC+AGG | - | chr3.1:70717579-70717598 | MS.gene013838:intron | 50.0% | |
| ATAGTTTCCACTCCGGCATG+CGG | + | chr3.1:70719571-70719590 | None:intergenic | 50.0% | |
| CAACCTGTGATGAGAACCAC+TGG | + | chr3.1:70716667-70716686 | None:intergenic | 50.0% | |
| CCACCTGCATGGTTCTCATA+TGG | - | chr3.1:70719704-70719723 | MS.gene013838:CDS | 50.0% | |
| CCATATGAGAACCATGCAGG+TGG | + | chr3.1:70719707-70719726 | None:intergenic | 50.0% | |
| CTTCCTAAGGACAGCAGCTA+CGG | + | chr3.1:70719681-70719700 | None:intergenic | 50.0% | |
| GAGAGAGGAACTTCAGCAAG+TGG | + | chr3.1:70716928-70716947 | None:intergenic | 50.0% | |
| GCACTGTAAGCACCATTCCA+AGG | + | chr3.1:70717682-70717701 | None:intergenic | 50.0% | |
| GGTGTACGAGAAGGAAACCT+TGG | - | chr3.1:70717859-70717878 | MS.gene013838:intron | 50.0% | |
| GTCTTGATCCAAATCCGCCA+TGG | + | chr3.1:70716776-70716795 | None:intergenic | 50.0% | |
| GTTCTCATCACAGGTTGCAG+CGG | - | chr3.1:70716670-70716689 | MS.gene013838:CDS | 50.0% | |
| TACAGCCTGGACCATTCTCA+TGG | + | chr3.1:70717587-70717606 | None:intergenic | 50.0% | |
| TCCAGCCACCAAATCCCAAA+TGG | + | chr3.1:70719371-70719390 | None:intergenic | 50.0% | |
| TGGCCATATGAGAACCATGC+AGG | + | chr3.1:70719710-70719729 | None:intergenic | 50.0% | |
| TTGGCATCTGGACCTTGGAA+TGG | - | chr3.1:70717667-70717686 | MS.gene013838:intron | 50.0% | |
| TTTGCAGCTGTTAGCTGCGA+AGG | + | chr3.1:70716725-70716744 | None:intergenic | 50.0% | |
| ! | TTCTGTTTGAAGGCGTGTCC+CGG | - | chr3.1:70717212-70717231 | MS.gene013838:intron | 50.0% |
| !! | ACCATTTGGGATTTGGTGGC+TGG | - | chr3.1:70719367-70719386 | MS.gene013838:intron | 50.0% |
| !! | ACGTTCAACCATGGCGGATT+TGG | - | chr3.1:70716765-70716784 | MS.gene013838:CDS | 50.0% |
| ACTGACACATGTTGGGCACC+GGG | + | chr3.1:70717233-70717252 | None:intergenic | 55.0% | |
| AGCCATCTACAACCGCATGC+CGG | - | chr3.1:70719556-70719575 | MS.gene013838:CDS | 55.0% | |
| CACTGACACATGTTGGGCAC+CGG | + | chr3.1:70717234-70717253 | None:intergenic | 55.0% | |
| CAGCAGGTCACGTTCAACCA+TGG | - | chr3.1:70716756-70716775 | MS.gene013838:CDS | 55.0% | |
| CAGGTCACGTTCAACCATGG+CGG | - | chr3.1:70716759-70716778 | MS.gene013838:CDS | 55.0% | |
| CATGGTTGAACGTGACCTGC+TGG | + | chr3.1:70716758-70716777 | None:intergenic | 55.0% | |
| CCAGGCTGTAGTTCCTCACA+TGG | - | chr3.1:70717597-70717616 | MS.gene013838:intron | 55.0% | |
| CCATGTGAGGAACTACAGCC+TGG | + | chr3.1:70717600-70717619 | None:intergenic | 55.0% | |
| CGCAGCTAACAGCTGCAAAG+TGG | - | chr3.1:70716726-70716745 | MS.gene013838:CDS | 55.0% | |
| GAAATCACTAGGGGTGGGCA+TGG | - | chr3.1:70717917-70717936 | MS.gene013838:intron | 55.0% | |
| GCAAAGTGGTTGCAACCAGC+AGG | - | chr3.1:70716740-70716759 | MS.gene013838:CDS | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | + | chr3.1:70719552-70719571 | None:intergenic | 55.0% | |
| TGCCCACCCCTAGAAATCAC+TGG | - | chr3.1:70718927-70718946 | MS.gene013838:intron | 55.0% | |
| !! | AGTGTTGCTGGGTTGGCATC+TGG | - | chr3.1:70717655-70717674 | MS.gene013838:intron | 55.0% |
| !! | CGTTGGAAGTGTTGCTGGGT+TGG | - | chr3.1:70717648-70717667 | MS.gene013838:intron | 55.0% |
| ATCACAGGTTGCAGCGGAGG+AGG | - | chr3.1:70716676-70716695 | MS.gene013838:CDS | 60.0% | |
| CACTAGGGGTGGGCATGGTT+TGG | - | chr3.1:70717922-70717941 | MS.gene013838:intron | 60.0% | |
| CTCATCACAGGTTGCAGCGG+AGG | - | chr3.1:70716673-70716692 | MS.gene013838:CDS | 60.0% | |
| CTCCGGCATGCGGTTGTAGA+TGG | + | chr3.1:70719561-70719580 | None:intergenic | 60.0% | |
| GCACCGTAGCTGCTGTCCTT+AGG | - | chr3.1:70719675-70719694 | MS.gene013838:CDS | 60.0% | |
| TCTACAACCGCATGCCGGAG+TGG | - | chr3.1:70719561-70719580 | MS.gene013838:CDS | 60.0% | |
| ! | GGTTGCAGCGGAGGAGGTAT+AGG | - | chr3.1:70716682-70716701 | MS.gene013838:CDS | 60.0% |
| !! | CTGGGTTGGCATCTGGACCT+TGG | - | chr3.1:70717662-70717681 | MS.gene013838:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70716625 | 70719811 | 70716625 | ID=MS.gene013838 |
| chr3.1 | mRNA | 70716625 | 70719811 | 70716625 | ID=MS.gene013838.t1;Parent=MS.gene013838 |
| chr3.1 | exon | 70719500 | 70719811 | 70719500 | ID=MS.gene013838.t1.exon1;Parent=MS.gene013838.t1 |
| chr3.1 | CDS | 70719500 | 70719811 | 70719500 | ID=cds.MS.gene013838.t1;Parent=MS.gene013838.t1 |
| chr3.1 | exon | 70718696 | 70718835 | 70718696 | ID=MS.gene013838.t1.exon2;Parent=MS.gene013838.t1 |
| chr3.1 | CDS | 70718696 | 70718835 | 70718696 | ID=cds.MS.gene013838.t1;Parent=MS.gene013838.t1 |
| chr3.1 | exon | 70716625 | 70716961 | 70716625 | ID=MS.gene013838.t1.exon3;Parent=MS.gene013838.t1 |
| chr3.1 | CDS | 70716625 | 70716961 | 70716625 | ID=cds.MS.gene013838.t1;Parent=MS.gene013838.t1 |
| Gene Sequence |
| Protein sequence |
