Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75445.t1 | XP_003602013.2 | 94.7 | 283 | 15 | 0 | 1 | 283 | 1 | 283 | 6.00E-148 | 533.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75445.t1 | G4N286 | 30.9 | 269 | 181 | 4 | 17 | 283 | 10 | 275 | 3.3e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75445.t1 | G7J4E1 | 94.7 | 283 | 15 | 0 | 1 | 283 | 16 | 298 | 4.3e-148 | 533.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75444 | MS.gene75445 | PPI |
| MS.gene045080 | MS.gene75445 | PPI |
| MS.gene43514 | MS.gene75445 | PPI |
| MS.gene013840 | MS.gene75445 | PPI |
| MS.gene015282 | MS.gene75445 | PPI |
| MS.gene09624 | MS.gene75445 | PPI |
| MS.gene013841 | MS.gene75445 | PPI |
| MS.gene013839 | MS.gene75445 | PPI |
| MS.gene052244 | MS.gene75445 | PPI |
| MS.gene045079 | MS.gene75445 | PPI |
| MS.gene052246 | MS.gene75445 | PPI |
| MS.gene013838 | MS.gene75445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75445.t1 | MTR_3g087850 | 94.700 | 283 | 15 | 0 | 1 | 283 | 16 | 298 | 0.0 | 563 |
| MS.gene75445.t1 | MTR_3g087860 | 86.926 | 283 | 37 | 0 | 1 | 283 | 1 | 283 | 2.29e-180 | 498 |
| MS.gene75445.t1 | MTR_4g097510 | 46.241 | 266 | 140 | 2 | 15 | 278 | 6 | 270 | 8.18e-84 | 253 |
| MS.gene75445.t1 | MTR_4g058810 | 34.518 | 197 | 114 | 7 | 15 | 198 | 15 | 209 | 2.38e-21 | 91.3 |
| MS.gene75445.t1 | MTR_4g058840 | 34.518 | 197 | 114 | 7 | 15 | 198 | 15 | 209 | 4.21e-21 | 90.5 |
| MS.gene75445.t1 | MTR_4g058820 | 34.518 | 197 | 114 | 7 | 15 | 198 | 15 | 209 | 4.21e-21 | 90.5 |
| MS.gene75445.t1 | MTR_8g096620 | 31.102 | 254 | 148 | 11 | 15 | 254 | 49 | 289 | 5.35e-19 | 85.9 |
| MS.gene75445.t1 | MTR_3g085740 | 31.551 | 187 | 121 | 3 | 15 | 195 | 79 | 264 | 6.50e-19 | 85.1 |
| MS.gene75445.t1 | MTR_8g096580 | 34.211 | 190 | 114 | 6 | 15 | 196 | 49 | 235 | 1.25e-18 | 84.7 |
| MS.gene75445.t1 | MTR_3g086210 | 30.412 | 194 | 119 | 5 | 17 | 197 | 57 | 247 | 1.50e-17 | 81.6 |
| MS.gene75445.t1 | MTR_7g105590 | 30.769 | 182 | 120 | 4 | 15 | 191 | 12 | 192 | 4.23e-17 | 77.8 |
| MS.gene75445.t1 | MTR_1g051165 | 32.161 | 199 | 115 | 7 | 15 | 195 | 18 | 214 | 9.56e-17 | 78.6 |
| MS.gene75445.t1 | MTR_7g080410 | 26.592 | 267 | 158 | 7 | 15 | 270 | 42 | 281 | 4.38e-16 | 77.4 |
| MS.gene75445.t1 | MTR_7g113650 | 31.795 | 195 | 110 | 7 | 13 | 191 | 43 | 230 | 7.01e-16 | 76.3 |
| MS.gene75445.t1 | MTR_3g113870 | 28.415 | 183 | 123 | 3 | 17 | 193 | 26 | 206 | 2.52e-15 | 73.9 |
| MS.gene75445.t1 | MTR_7g107670 | 30.811 | 185 | 119 | 4 | 15 | 193 | 37 | 218 | 5.36e-15 | 73.9 |
| MS.gene75445.t1 | MTR_7g080410 | 30.612 | 196 | 122 | 6 | 15 | 199 | 42 | 234 | 8.14e-15 | 73.6 |
| MS.gene75445.t1 | MTR_1g082760 | 31.282 | 195 | 108 | 7 | 15 | 191 | 44 | 230 | 1.65e-14 | 72.4 |
| MS.gene75445.t1 | MTR_3g086190 | 29.612 | 206 | 129 | 6 | 17 | 208 | 50 | 253 | 4.02e-14 | 71.6 |
| MS.gene75445.t1 | MTR_4g052320 | 28.889 | 180 | 120 | 4 | 15 | 188 | 12 | 189 | 1.04e-13 | 69.7 |
| MS.gene75445.t1 | MTR_4g052350 | 30.481 | 187 | 108 | 5 | 15 | 188 | 18 | 195 | 1.05e-13 | 70.1 |
| MS.gene75445.t1 | MTR_4g052300 | 29.444 | 180 | 119 | 4 | 15 | 188 | 12 | 189 | 1.35e-13 | 69.7 |
| MS.gene75445.t1 | MTR_1563s0010 | 34.409 | 186 | 110 | 4 | 16 | 190 | 114 | 298 | 8.16e-13 | 68.6 |
| MS.gene75445.t1 | MTR_7g110140 | 31.343 | 201 | 125 | 7 | 15 | 208 | 10 | 204 | 1.20e-12 | 67.0 |
| MS.gene75445.t1 | MTR_4g052340 | 27.807 | 187 | 127 | 4 | 15 | 195 | 18 | 202 | 1.57e-12 | 66.6 |
| MS.gene75445.t1 | MTR_4g066050 | 27.642 | 246 | 156 | 9 | 9 | 242 | 22 | 257 | 4.73e-12 | 65.1 |
| MS.gene75445.t1 | MTR_6g035395 | 32.203 | 177 | 105 | 5 | 15 | 188 | 9 | 173 | 6.31e-12 | 64.7 |
| MS.gene75445.t1 | MTR_2g022600 | 31.868 | 182 | 110 | 5 | 16 | 188 | 38 | 214 | 1.08e-11 | 64.7 |
| MS.gene75445.t1 | MTR_7g063390 | 31.967 | 122 | 82 | 1 | 71 | 191 | 80 | 201 | 2.44e-11 | 63.2 |
| MS.gene75445.t1 | MTR_2g090165 | 29.630 | 189 | 117 | 6 | 15 | 193 | 10 | 192 | 5.56e-11 | 62.0 |
| MS.gene75445.t1 | MTR_7g063330 | 26.866 | 201 | 138 | 5 | 3 | 195 | 5 | 204 | 7.99e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75445.t1 | AT5G10050 | 63.971 | 272 | 98 | 0 | 11 | 282 | 5 | 276 | 5.01e-138 | 390 |
| MS.gene75445.t1 | AT5G65205 | 64.207 | 271 | 97 | 0 | 11 | 281 | 6 | 276 | 1.63e-135 | 384 |
| MS.gene75445.t1 | AT3G03330 | 27.239 | 268 | 161 | 7 | 15 | 270 | 45 | 290 | 3.00e-21 | 92.0 |
| MS.gene75445.t1 | AT5G50600 | 31.915 | 188 | 118 | 5 | 15 | 195 | 49 | 233 | 4.69e-21 | 91.7 |
| MS.gene75445.t1 | AT5G50700 | 31.915 | 188 | 118 | 5 | 15 | 195 | 49 | 233 | 4.69e-21 | 91.7 |
| MS.gene75445.t1 | AT3G47350 | 31.053 | 190 | 117 | 6 | 15 | 195 | 48 | 232 | 4.47e-19 | 85.5 |
| MS.gene75445.t1 | AT3G47350 | 31.053 | 190 | 117 | 6 | 15 | 195 | 48 | 232 | 1.19e-18 | 84.7 |
| MS.gene75445.t1 | AT1G10310 | 31.553 | 206 | 128 | 6 | 16 | 211 | 20 | 222 | 1.02e-17 | 80.9 |
| MS.gene75445.t1 | AT1G67730 | 30.208 | 192 | 118 | 5 | 17 | 195 | 55 | 243 | 2.83e-17 | 80.9 |
| MS.gene75445.t1 | AT2G17845 | 33.166 | 199 | 111 | 8 | 15 | 195 | 51 | 245 | 3.53e-17 | 80.5 |
| MS.gene75445.t1 | AT1G54870 | 32.353 | 204 | 117 | 6 | 5 | 191 | 73 | 272 | 5.63e-17 | 80.1 |
| MS.gene75445.t1 | AT1G54870 | 32.353 | 204 | 117 | 6 | 5 | 191 | 75 | 274 | 5.78e-17 | 80.1 |
| MS.gene75445.t1 | AT3G05260 | 30.542 | 203 | 121 | 5 | 5 | 191 | 28 | 226 | 2.12e-16 | 77.8 |
| MS.gene75445.t1 | AT3G55310 | 31.606 | 193 | 119 | 6 | 15 | 195 | 21 | 212 | 6.44e-16 | 76.3 |
| MS.gene75445.t1 | AT1G52340 | 29.767 | 215 | 136 | 6 | 15 | 217 | 22 | 233 | 1.08e-15 | 75.9 |
| MS.gene75445.t1 | AT4G03140 | 28.070 | 228 | 149 | 7 | 15 | 235 | 82 | 301 | 3.65e-15 | 75.1 |
| MS.gene75445.t1 | AT5G50690 | 28.700 | 223 | 140 | 8 | 2 | 217 | 43 | 253 | 4.07e-15 | 74.3 |
| MS.gene75445.t1 | AT5G50590 | 28.700 | 223 | 140 | 8 | 2 | 217 | 43 | 253 | 4.07e-15 | 74.3 |
| MS.gene75445.t1 | AT5G50690 | 30.049 | 203 | 125 | 7 | 2 | 197 | 43 | 235 | 5.95e-15 | 73.2 |
| MS.gene75445.t1 | AT5G50590 | 30.049 | 203 | 125 | 7 | 2 | 197 | 43 | 235 | 5.95e-15 | 73.2 |
| MS.gene75445.t1 | AT1G24360 | 32.620 | 187 | 119 | 4 | 15 | 195 | 78 | 263 | 2.07e-14 | 72.4 |
| MS.gene75445.t1 | AT3G29260 | 31.122 | 196 | 126 | 5 | 6 | 195 | 2 | 194 | 3.17e-13 | 68.6 |
| MS.gene75445.t1 | AT5G50770 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 3.72e-13 | 68.9 |
| MS.gene75445.t1 | AT3G03350 | 40.476 | 84 | 50 | 0 | 110 | 193 | 183 | 266 | 4.25e-13 | 68.6 |
| MS.gene75445.t1 | AT3G03350 | 39.773 | 88 | 53 | 0 | 109 | 196 | 268 | 355 | 5.97e-13 | 68.6 |
| MS.gene75445.t1 | AT3G29250 | 30.890 | 191 | 123 | 5 | 11 | 195 | 45 | 232 | 6.41e-13 | 68.2 |
| MS.gene75445.t1 | AT3G29250 | 30.890 | 191 | 123 | 5 | 11 | 195 | 43 | 230 | 6.81e-13 | 67.8 |
| MS.gene75445.t1 | AT3G29250 | 30.890 | 191 | 123 | 5 | 11 | 195 | 7 | 194 | 1.27e-12 | 66.6 |
| MS.gene75445.t1 | AT4G10020 | 27.099 | 262 | 160 | 11 | 6 | 254 | 44 | 287 | 3.37e-12 | 66.6 |
| MS.gene75445.t1 | AT1G24470 | 27.000 | 200 | 126 | 6 | 17 | 202 | 56 | 249 | 1.41e-11 | 64.3 |
| MS.gene75445.t1 | AT2G47130 | 29.630 | 189 | 124 | 5 | 11 | 193 | 7 | 192 | 2.66e-11 | 62.8 |
| MS.gene75445.t1 | AT3G46170 | 27.979 | 193 | 126 | 7 | 15 | 195 | 30 | 221 | 2.90e-11 | 63.2 |
| MS.gene75445.t1 | AT4G20760 | 26.587 | 252 | 151 | 11 | 15 | 238 | 45 | 290 | 2.96e-11 | 63.2 |
| MS.gene75445.t1 | AT4G20760 | 26.587 | 252 | 151 | 11 | 15 | 238 | 65 | 310 | 3.37e-11 | 63.2 |
| MS.gene75445.t1 | AT3G26760 | 23.881 | 201 | 128 | 6 | 5 | 191 | 31 | 220 | 8.70e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAGAACTTGGACATTT+TGG | 0.143636 | 3.3:-73144072 | MS.gene75445:CDS |
| CGTTAGTATCAAACGTGTTT+TGG | 0.275941 | 3.3:+73144970 | None:intergenic |
| TGCGTTAGCCTCTGGACCTT+GGG | 0.276610 | 3.3:-73144368 | MS.gene75445:CDS |
| TGGAGCTGTGAAGTCAAATA+TGG | 0.307037 | 3.3:-73144025 | MS.gene75445:CDS |
| ACGTTCTACAATGGCGGATT+TGG | 0.318601 | 3.3:-73145159 | MS.gene75445:CDS |
| ACGTTTGATACTAACGTCTT+TGG | 0.327209 | 3.3:-73144963 | MS.gene75445:intron |
| CCACCTGCATGGTTCTCTTA+TGG | 0.348092 | 3.3:-73143841 | MS.gene75445:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3.3:-73144419 | MS.gene75445:CDS |
| CTCTGGCATGCGGTTGTAGA+TGG | 0.375038 | 3.3:+73143987 | None:intergenic |
| CTGCGTTAGCCTCTGGACCT+TGG | 0.392453 | 3.3:-73144369 | MS.gene75445:CDS |
| AAGTCAAATATGGGAAATTC+CGG | 0.392829 | 3.3:-73144015 | MS.gene75445:CDS |
| TAACGCTGGTGTTCCTTGTA+CGG | 0.415470 | 3.3:-73145024 | MS.gene75445:CDS |
| AGTTCTTGAAGGAAGAATCT+AGG | 0.420814 | 3.3:+73145128 | None:intergenic |
| GGTTGCAGTGGAGGAGGTAT+TGG | 0.435778 | 3.3:-73145242 | MS.gene75445:CDS |
| ATTGCAGCTGTTGGCTGCGA+AGG | 0.447096 | 3.3:+73145202 | None:intergenic |
| ATATTTGACTTCACAGCTCC+AGG | 0.451839 | 3.3:+73144027 | None:intergenic |
| AGTGTTACTGCGTTAGCCTC+TGG | 0.452738 | 3.3:-73144376 | MS.gene75445:CDS |
| TGTTTAGCAAACTCGTCTGT+AGG | 0.453270 | 3.3:+73143892 | None:intergenic |
| CCATGTGAGGAACCACAGCC+TGG | 0.464735 | 3.3:+73144434 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+GGG | 0.465184 | 3.3:+73143893 | None:intergenic |
| ACTGAACATTGAGTTCTTGA+AGG | 0.470500 | 3.3:+73145117 | None:intergenic |
| TGATCAAGAAGACTCAAAAC+TGG | 0.489269 | 3.3:-73145279 | MS.gene75445:CDS |
| AGGATCCATGAGAATGATCC+AGG | 0.495626 | 3.3:-73144452 | MS.gene75445:CDS |
| AACTCTGCTCACGCTTTCAT+CGG | 0.498955 | 3.3:+73145094 | None:intergenic |
| CTCATCACAGGTTGCAGTGG+AGG | 0.505784 | 3.3:-73145251 | MS.gene75445:CDS |
| TGCAACCACATTGCAGCTGT+TGG | 0.505823 | 3.3:+73145193 | None:intergenic |
| CCAGGCTGTGGTTCCTCACA+TGG | 0.506294 | 3.3:-73144434 | MS.gene75445:CDS |
| AAACTGGTGGTTCTCATCAC+AGG | 0.512865 | 3.3:-73145263 | MS.gene75445:CDS |
| GAGACAGTAGAGCTCTCTCT+TGG | 0.513068 | 3.3:+73143932 | None:intergenic |
| GATGTTCTTGTTAATAACGC+TGG | 0.518173 | 3.3:-73145038 | MS.gene75445:CDS |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3.3:+73143996 | None:intergenic |
| CTTTCTTAGAATAGCAGCTA+CGG | 0.520499 | 3.3:+73143867 | None:intergenic |
| TGGTTCCTCACATGGCAACT+AGG | 0.522562 | 3.3:-73144426 | MS.gene75445:CDS |
| GATGTTGTGAGTGTTGTCCC+TGG | 0.523404 | 3.3:-73144045 | MS.gene75445:CDS |
| TCGGCAAGTGGGCCCGTACA+AGG | 0.524305 | 3.3:+73145011 | None:intergenic |
| ATCACAGGTTGCAGTGGAGG+AGG | 0.526896 | 3.3:-73145248 | MS.gene75445:CDS |
| GCAATGTGGTTGCAACCAGC+AGG | 0.532348 | 3.3:-73145184 | MS.gene75445:CDS |
| TTGTACGGGCCCACTTGCCG+AGG | 0.536665 | 3.3:-73145009 | MS.gene75445:CDS |
| CACAGCCTGGATCATTCTCA+TGG | 0.538143 | 3.3:+73144447 | None:intergenic |
| GGAGCTGTGAAGTCAAATAT+GGG | 0.538147 | 3.3:-73144024 | MS.gene75445:CDS |
| ATGCTTTGACAGATACATTG+AGG | 0.541960 | 3.3:-73144312 | MS.gene75445:intron |
| AACGCTGGTGTTCCTTGTAC+GGG | 0.542007 | 3.3:-73145023 | MS.gene75445:CDS |
| TGGCAATTATTCTACTGTCA+TGG | 0.543525 | 3.3:-73143821 | MS.gene75445:CDS |
| GTTCTCATCACAGGTTGCAG+TGG | 0.550811 | 3.3:-73145254 | MS.gene75445:CDS |
| GAGAGAGGAACCTCGGCAAG+TGG | 0.556377 | 3.3:+73144999 | None:intergenic |
| TCAACATACAGATTAGAACT+TGG | 0.558737 | 3.3:-73144081 | MS.gene75445:intron |
| GATTTGAACAGTTTCCACTC+TGG | 0.560594 | 3.3:+73143970 | None:intergenic |
| AAGAGAGAGCTCTACTGTCT+CGG | 0.564188 | 3.3:-73143930 | MS.gene75445:CDS |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3.3:+73144421 | None:intergenic |
| CATTGTAGAACGTGACCTGC+TGG | 0.575467 | 3.3:+73145169 | None:intergenic |
| TGAAAGCGTGAGCAGAGTTG+TGG | 0.579399 | 3.3:-73145090 | MS.gene75445:CDS |
| CATGAGAATGATCCAGGCTG+TGG | 0.580318 | 3.3:-73144446 | MS.gene75445:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3.3:-73144418 | MS.gene75445:CDS |
| TTTAGCAAACTCGTCTGTAG+GGG | 0.590181 | 3.3:+73143894 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3.3:-73144400 | MS.gene75445:CDS |
| TTAGCCTCTGGACCTTGGGG+CGG | 0.599080 | 3.3:-73144364 | MS.gene75445:CDS |
| TTGCCATAAGAGAACCATGC+AGG | 0.601420 | 3.3:+73143838 | None:intergenic |
| TAAGAAAGAAACCACCTGCA+TGG | 0.606131 | 3.3:-73143852 | MS.gene75445:CDS |
| TATTTGACTTCACAGCTCCA+GGG | 0.611695 | 3.3:+73144028 | None:intergenic |
| ACAGTTTCCACTCTGGCATG+CGG | 0.615919 | 3.3:+73143977 | None:intergenic |
| GCGTTAGCCTCTGGACCTTG+GGG | 0.617062 | 3.3:-73144367 | MS.gene75445:CDS |
| AGAGAGGAACCTCGGCAAGT+GGG | 0.627629 | 3.3:+73145000 | None:intergenic |
| GATTGCAGAGAGAGGAACCT+CGG | 0.628721 | 3.3:+73144992 | None:intergenic |
| CAGCAGGTCACGTTCTACAA+TGG | 0.634429 | 3.3:-73145168 | MS.gene75445:CDS |
| GCACTATAAGTACCGCCCCA+AGG | 0.642162 | 3.3:+73144352 | None:intergenic |
| CGCAGCCAACAGCTGCAATG+TGG | 0.642199 | 3.3:-73145198 | MS.gene75445:CDS |
| CAGGTCACGTTCTACAATGG+CGG | 0.644489 | 3.3:-73145165 | MS.gene75445:CDS |
| TCAAGAAGACTCAAAACTGG+TGG | 0.662392 | 3.3:-73145276 | MS.gene75445:CDS |
| AGTACCGCCCCAAGGTCCAG+AGG | 0.667983 | 3.3:+73144360 | None:intergenic |
| CCATAAGAGAACCATGCAGG+TGG | 0.674106 | 3.3:+73143841 | None:intergenic |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3.3:+73143781 | None:intergenic |
| TCTACAACCGCATGCCAGAG+TGG | 0.686871 | 3.3:-73143984 | MS.gene75445:CDS |
| AGAGAGCTCTACTGTCTCGG+AGG | 0.716254 | 3.3:-73143927 | MS.gene75445:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTTTGATATG+CGG | - | chr3.3:73144791-73144810 | MS.gene75445:intron | 10.0% |
| !! | ATAATTCAAAGTAATAATGT+CGG | + | chr3.3:73144244-73144263 | None:intergenic | 15.0% |
| !! | ATTAAAATAAGTTTGAAGAT+AGG | + | chr3.3:73144781-73144800 | None:intergenic | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | - | chr3.3:73144486-73144505 | MS.gene75445:intron | 15.0% |
| !! | ACAACAATTATAAGCTATAA+AGG | + | chr3.3:73144952-73144971 | None:intergenic | 20.0% |
| !! | ATATTTATGTATGTTAGACT+TGG | + | chr3.3:73144404-73144423 | None:intergenic | 20.0% |
| !! | TTCTCAACAAACAAAAATAT+TGG | - | chr3.3:73144270-73144289 | MS.gene75445:intron | 20.0% |
| !!! | GATACTGTTTTGAATAAATT+TGG | - | chr3.3:73143990-73144009 | MS.gene75445:CDS | 20.0% |
| !!! | TAGAATTTTTATGTTAGACT+TGG | - | chr3.3:73144343-73144362 | MS.gene75445:CDS | 20.0% |
| !!! | TGTTAATAGGTTTTAGTTTT+TGG | - | chr3.3:73144499-73144518 | MS.gene75445:intron | 20.0% |
| ! | ATCAAATCAAATCAACAAGA+TGG | - | chr3.3:73144825-73144844 | MS.gene75445:intron | 25.0% |
| AAGTCAAATATGGGAAATTC+CGG | - | chr3.3:73145043-73145062 | MS.gene75445:CDS | 30.0% | |
| AATAATTATGTCTGTAAGGC+AGG | - | chr3.3:73144171-73144190 | MS.gene75445:intron | 30.0% | |
| ACTACTAACATAACTAGACA+GGG | + | chr3.3:73144429-73144448 | None:intergenic | 30.0% | |
| ATAAGCTATAAAGGTCAGAT+TGG | + | chr3.3:73144943-73144962 | None:intergenic | 30.0% | |
| TACTACTAACATAACTAGAC+AGG | + | chr3.3:73144430-73144449 | None:intergenic | 30.0% | |
| TCAACATACAGATTAGAACT+TGG | - | chr3.3:73144977-73144996 | MS.gene75445:CDS | 30.0% | |
| TGGGAATAATTATGTCTGTA+AGG | - | chr3.3:73144167-73144186 | MS.gene75445:intron | 30.0% | |
| ! | AGATTAGAACTTGGACATTT+TGG | - | chr3.3:73144986-73145005 | MS.gene75445:CDS | 30.0% |
| !!! | GGTTTTAGTTTTTGGTTTTG+TGG | - | chr3.3:73144507-73144526 | MS.gene75445:intron | 30.0% |
| ACGATTTCTATCGAAACAAG+CGG | + | chr3.3:73144864-73144883 | None:intergenic | 35.0% | |
| ACGTTTGATACTAACGTCTT+TGG | - | chr3.3:73144095-73144114 | MS.gene75445:intron | 35.0% | |
| ACTGAACATTGAGTTCTTGA+AGG | + | chr3.3:73143944-73143963 | None:intergenic | 35.0% | |
| AGTTCTTGAAGGAAGAATCT+AGG | + | chr3.3:73143933-73143952 | None:intergenic | 35.0% | |
| ATGCTTTGACAGATACATTG+AGG | - | chr3.3:73144746-73144765 | MS.gene75445:intron | 35.0% | |
| CTTTCTTAGAATAGCAGCTA+CGG | + | chr3.3:73145194-73145213 | None:intergenic | 35.0% | |
| GATGTTCTTGTTAATAACGC+TGG | - | chr3.3:73144020-73144039 | MS.gene75445:CDS | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | - | chr3.3:73144457-73144476 | MS.gene75445:intron | 35.0% | |
| GTCTATATTCGTGCTTCATA+GGG | - | chr3.3:73144315-73144334 | MS.gene75445:CDS | 35.0% | |
| GTTATGTTAGTAGTACAACC+AGG | - | chr3.3:73144435-73144454 | MS.gene75445:CDS | 35.0% | |
| TAGTACAACCAGGTACAATT+GGG | - | chr3.3:73144445-73144464 | MS.gene75445:CDS | 35.0% | |
| TGATCAAGAAGACTCAAAAC+TGG | - | chr3.3:73143779-73143798 | MS.gene75445:CDS | 35.0% | |
| TGGCAATTATTCTACTGTCA+TGG | - | chr3.3:73145237-73145256 | MS.gene75445:CDS | 35.0% | |
| TGTCTATATTCGTGCTTCAT+AGG | - | chr3.3:73144314-73144333 | MS.gene75445:CDS | 35.0% | |
| TTCGATAGAAATCGTTGCTT+TGG | - | chr3.3:73144869-73144888 | MS.gene75445:intron | 35.0% | |
| TTGATACTAACGTCTTTGGT+TGG | - | chr3.3:73144099-73144118 | MS.gene75445:intron | 35.0% | |
| ! | ATACGCCATTTAGAATCTAG+TGG | - | chr3.3:73144907-73144926 | MS.gene75445:intron | 35.0% |
| ! | CGTTAGTATCAAACGTGTTT+TGG | + | chr3.3:73144091-73144110 | None:intergenic | 35.0% |
| AGAAAGTCTCTAACACAGAG+AGG | + | chr3.3:73145280-73145299 | None:intergenic | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | - | chr3.3:73144658-73144677 | MS.gene75445:intron | 40.0% | |
| GATTTGAACAGTTTCCACTC+TGG | + | chr3.3:73145091-73145110 | None:intergenic | 40.0% | |
| GGAGCTGTGAAGTCAAATAT+GGG | - | chr3.3:73145034-73145053 | MS.gene75445:CDS | 40.0% | |
| GTAGTACAACCAGGTACAAT+TGG | - | chr3.3:73144444-73144463 | MS.gene75445:CDS | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+GGG | + | chr3.3:73145168-73145187 | None:intergenic | 40.0% | |
| TAAGAAAGAAACCACCTGCA+TGG | - | chr3.3:73145206-73145225 | MS.gene75445:CDS | 40.0% | |
| TCAAGAAGACTCAAAACTGG+TGG | - | chr3.3:73143782-73143801 | MS.gene75445:CDS | 40.0% | |
| TCCAGCCACTAGATTCTAAA+TGG | + | chr3.3:73144915-73144934 | None:intergenic | 40.0% | |
| TGGAGCTGTGAAGTCAAATA+TGG | - | chr3.3:73145033-73145052 | MS.gene75445:CDS | 40.0% | |
| TGTTTACACCCAATTGTACC+TGG | + | chr3.3:73144456-73144475 | None:intergenic | 40.0% | |
| TGTTTAGCAAACTCGTCTGT+AGG | + | chr3.3:73145169-73145188 | None:intergenic | 40.0% | |
| TTTAGCAAACTCGTCTGTAG+GGG | + | chr3.3:73145167-73145186 | None:intergenic | 40.0% | |
| ! | ATATTTGACTTCACAGCTCC+AGG | + | chr3.3:73145034-73145053 | None:intergenic | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | + | chr3.3:73145033-73145052 | None:intergenic | 40.0% |
| !! | TAATAATGTCGGTGTCGTGA+GGG | + | chr3.3:73144233-73144252 | None:intergenic | 40.0% |
| AAACTGGTGGTTCTCATCAC+AGG | - | chr3.3:73143795-73143814 | MS.gene75445:CDS | 45.0% | |
| AACTCTGCTCACGCTTTCAT+CGG | + | chr3.3:73143967-73143986 | None:intergenic | 45.0% | |
| AAGAGAGAGCTCTACTGTCT+CGG | - | chr3.3:73145128-73145147 | MS.gene75445:CDS | 45.0% | |
| AGGATCCATGAGAATGATCC+AGG | - | chr3.3:73144606-73144625 | MS.gene75445:intron | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | - | chr3.3:73144640-73144659 | MS.gene75445:intron | 45.0% | |
| CTATCACTGCATACATGTGC+AGG | - | chr3.3:73144586-73144605 | MS.gene75445:intron | 45.0% | |
| TAACGCTGGTGTTCCTTGTA+CGG | - | chr3.3:73144034-73144053 | MS.gene75445:CDS | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | - | chr3.3:73144639-73144658 | MS.gene75445:intron | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | + | chr3.3:73144640-73144659 | None:intergenic | 45.0% | |
| TTGCCATAAGAGAACCATGC+AGG | + | chr3.3:73145223-73145242 | None:intergenic | 45.0% | |
| ! | GCCATTTAGAATCTAGTGGC+TGG | - | chr3.3:73144911-73144930 | MS.gene75445:intron | 45.0% |
| !! | ACGTTCTACAATGGCGGATT+TGG | - | chr3.3:73143899-73143918 | MS.gene75445:CDS | 45.0% |
| !! | GTAATAATGTCGGTGTCGTG+AGG | + | chr3.3:73144234-73144253 | None:intergenic | 45.0% |
| !! | GTGTTTTGGATTGCAGAGAG+AGG | + | chr3.3:73144077-73144096 | None:intergenic | 45.0% |
| !!! | ATAAAAATTGTTTTTTTAAT+TGG | - | chr3.3:73144147-73144166 | MS.gene75445:intron | 5.0% |
| !!! | TAAAAATTGTTTTTTTAATT+GGG | - | chr3.3:73144148-73144167 | MS.gene75445:intron | 5.0% |
| AACGCTGGTGTTCCTTGTAC+GGG | - | chr3.3:73144035-73144054 | MS.gene75445:CDS | 50.0% | |
| ACAGTTTCCACTCTGGCATG+CGG | + | chr3.3:73145084-73145103 | None:intergenic | 50.0% | |
| CACAGCCTGGATCATTCTCA+TGG | + | chr3.3:73144614-73144633 | None:intergenic | 50.0% | |
| CAGCAGGTCACGTTCTACAA+TGG | - | chr3.3:73143890-73143909 | MS.gene75445:CDS | 50.0% | |
| CAGGTCACGTTCTACAATGG+CGG | - | chr3.3:73143893-73143912 | MS.gene75445:CDS | 50.0% | |
| CATGAGAATGATCCAGGCTG+TGG | - | chr3.3:73144612-73144631 | MS.gene75445:intron | 50.0% | |
| CATTGTAGAACGTGACCTGC+TGG | + | chr3.3:73143892-73143911 | None:intergenic | 50.0% | |
| CCACCTGCATGGTTCTCTTA+TGG | - | chr3.3:73145217-73145236 | MS.gene75445:CDS | 50.0% | |
| CCATAAGAGAACCATGCAGG+TGG | + | chr3.3:73145220-73145239 | None:intergenic | 50.0% | |
| GAGACAGTAGAGCTCTCTCT+TGG | + | chr3.3:73145129-73145148 | None:intergenic | 50.0% | |
| GATTGCAGAGAGAGGAACCT+CGG | + | chr3.3:73144069-73144088 | None:intergenic | 50.0% | |
| GTTCTCATCACAGGTTGCAG+TGG | - | chr3.3:73143804-73143823 | MS.gene75445:CDS | 50.0% | |
| TGCAACCACATTGCAGCTGT+TGG | + | chr3.3:73143868-73143887 | None:intergenic | 50.0% | |
| TGGTTCCTCACATGGCAACT+AGG | - | chr3.3:73144632-73144651 | MS.gene75445:intron | 50.0% | |
| ! | AGTGTTACTGCGTTAGCCTC+TGG | - | chr3.3:73144682-73144701 | MS.gene75445:intron | 50.0% |
| ! | GATGTTGTGAGTGTTGTCCC+TGG | - | chr3.3:73145013-73145032 | MS.gene75445:CDS | 50.0% |
| ! | TGAAAGCGTGAGCAGAGTTG+TGG | - | chr3.3:73143968-73143987 | MS.gene75445:CDS | 50.0% |
| ACTGACACGTCTCTGACACC+GGG | + | chr3.3:73144202-73144221 | None:intergenic | 55.0% | |
| AGAGAGCTCTACTGTCTCGG+AGG | - | chr3.3:73145131-73145150 | MS.gene75445:CDS | 55.0% | |
| AGAGAGGAACCTCGGCAAGT+GGG | + | chr3.3:73144061-73144080 | None:intergenic | 55.0% | |
| ATCACAGGTTGCAGTGGAGG+AGG | - | chr3.3:73143810-73143829 | MS.gene75445:CDS | 55.0% | |
| CACTGACACGTCTCTGACAC+CGG | + | chr3.3:73144203-73144222 | None:intergenic | 55.0% | |
| CTCATCACAGGTTGCAGTGG+AGG | - | chr3.3:73143807-73143826 | MS.gene75445:CDS | 55.0% | |
| CTCTGGCATGCGGTTGTAGA+TGG | + | chr3.3:73145074-73145093 | None:intergenic | 55.0% | |
| GCAATGTGGTTGCAACCAGC+AGG | - | chr3.3:73143874-73143893 | MS.gene75445:CDS | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | + | chr3.3:73145065-73145084 | None:intergenic | 55.0% | |
| TCTACAACCGCATGCCAGAG+TGG | - | chr3.3:73145074-73145093 | MS.gene75445:CDS | 55.0% | |
| ! | ATTGCAGCTGTTGGCTGCGA+AGG | + | chr3.3:73143859-73143878 | None:intergenic | 55.0% |
| ! | GCACTATAAGTACCGCCCCA+AGG | + | chr3.3:73144709-73144728 | None:intergenic | 55.0% |
| ! | GGTTGCAGTGGAGGAGGTAT+TGG | - | chr3.3:73143816-73143835 | MS.gene75445:CDS | 55.0% |
| ! | TGCGTTAGCCTCTGGACCTT+GGG | - | chr3.3:73144690-73144709 | MS.gene75445:intron | 55.0% |
| CCAGGCTGTGGTTCCTCACA+TGG | - | chr3.3:73144624-73144643 | MS.gene75445:intron | 60.0% | |
| CCATGTGAGGAACCACAGCC+TGG | + | chr3.3:73144627-73144646 | None:intergenic | 60.0% | |
| CGCAGCCAACAGCTGCAATG+TGG | - | chr3.3:73143860-73143879 | MS.gene75445:CDS | 60.0% | |
| GAGAGAGGAACCTCGGCAAG+TGG | + | chr3.3:73144062-73144081 | None:intergenic | 60.0% | |
| TCTGTAAGGCAGGCGTGTCC+CGG | - | chr3.3:73144181-73144200 | MS.gene75445:intron | 60.0% | |
| TTAGCCTCTGGACCTTGGGG+CGG | - | chr3.3:73144694-73144713 | MS.gene75445:intron | 60.0% | |
| ! | CTGCGTTAGCCTCTGGACCT+TGG | - | chr3.3:73144689-73144708 | MS.gene75445:intron | 60.0% |
| ! | GCGTTAGCCTCTGGACCTTG+GGG | - | chr3.3:73144691-73144710 | MS.gene75445:intron | 60.0% |
| AGTACCGCCCCAAGGTCCAG+AGG | + | chr3.3:73144701-73144720 | None:intergenic | 65.0% | |
| TCGGCAAGTGGGCCCGTACA+AGG | + | chr3.3:73144050-73144069 | None:intergenic | 65.0% | |
| TTGTACGGGCCCACTTGCCG+AGG | - | chr3.3:73144049-73144068 | MS.gene75445:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73143759 | 73145321 | 73143759 | ID=MS.gene75445 |
| chr3.3 | mRNA | 73143759 | 73145321 | 73143759 | ID=MS.gene75445.t1;Parent=MS.gene75445 |
| chr3.3 | exon | 73144964 | 73145321 | 73144964 | ID=MS.gene75445.t1.exon1;Parent=MS.gene75445.t1 |
| chr3.3 | CDS | 73144964 | 73145321 | 73144964 | ID=cds.MS.gene75445.t1;Parent=MS.gene75445.t1 |
| chr3.3 | exon | 73144313 | 73144472 | 73144313 | ID=MS.gene75445.t1.exon2;Parent=MS.gene75445.t1 |
| chr3.3 | CDS | 73144313 | 73144472 | 73144313 | ID=cds.MS.gene75445.t1;Parent=MS.gene75445.t1 |
| chr3.3 | exon | 73143759 | 73144092 | 73143759 | ID=MS.gene75445.t1.exon3;Parent=MS.gene75445.t1 |
| chr3.3 | CDS | 73143759 | 73144092 | 73143759 | ID=cds.MS.gene75445.t1;Parent=MS.gene75445.t1 |
| Gene Sequence |
| Protein sequence |
