Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045080.t1 | XP_003602013.2 | 94.7 | 283 | 15 | 0 | 1 | 283 | 1 | 283 | 1.60E-148 | 535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045080.t1 | G4N286 | 31.2 | 269 | 180 | 4 | 17 | 283 | 10 | 275 | 3.9e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045080.t1 | G7J4E1 | 94.7 | 283 | 15 | 0 | 1 | 283 | 16 | 298 | 1.1e-148 | 535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045080 | MS.gene052246 | PPI |
| MS.gene045080 | MS.gene052244 | PPI |
| MS.gene045080 | MS.gene75445 | PPI |
| MS.gene045080 | MS.gene013839 | PPI |
| MS.gene75444 | MS.gene045080 | PPI |
| MS.gene045080 | MS.gene013841 | PPI |
| MS.gene045080 | MS.gene015282 | PPI |
| MS.gene045080 | MS.gene75444 | PPI |
| MS.gene045080 | MS.gene09624 | PPI |
| MS.gene045080 | MS.gene43514 | PPI |
| MS.gene045080 | MS.gene013840 | PPI |
| MS.gene045080 | MS.gene013838 | PPI |
| MS.gene045080 | MS.gene045079 | PPI |
| MS.gene013841 | MS.gene045080 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045080.t1 | MTR_3g087850 | 94.700 | 283 | 15 | 0 | 1 | 283 | 16 | 298 | 0.0 | 563 |
| MS.gene045080.t1 | MTR_3g087860 | 86.926 | 283 | 37 | 0 | 1 | 283 | 1 | 283 | 3.88e-180 | 497 |
| MS.gene045080.t1 | MTR_4g097510 | 46.617 | 266 | 139 | 2 | 15 | 278 | 6 | 270 | 3.58e-84 | 254 |
| MS.gene045080.t1 | MTR_4g058810 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 2.74e-21 | 90.9 |
| MS.gene045080.t1 | MTR_4g058840 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 5.10e-21 | 90.5 |
| MS.gene045080.t1 | MTR_4g058820 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 5.10e-21 | 90.5 |
| MS.gene045080.t1 | MTR_8g096580 | 34.211 | 190 | 114 | 6 | 15 | 196 | 49 | 235 | 1.29e-18 | 84.3 |
| MS.gene045080.t1 | MTR_8g096620 | 29.921 | 254 | 151 | 9 | 15 | 254 | 49 | 289 | 1.79e-18 | 84.3 |
| MS.gene045080.t1 | MTR_3g085740 | 30.481 | 187 | 123 | 3 | 15 | 195 | 79 | 264 | 7.98e-18 | 82.4 |
| MS.gene045080.t1 | MTR_7g113650 | 32.308 | 195 | 109 | 7 | 13 | 191 | 43 | 230 | 4.24e-17 | 79.7 |
| MS.gene045080.t1 | MTR_3g086210 | 29.897 | 194 | 120 | 5 | 17 | 197 | 57 | 247 | 5.97e-17 | 79.7 |
| MS.gene045080.t1 | MTR_7g105590 | 30.769 | 182 | 120 | 4 | 15 | 191 | 12 | 192 | 1.52e-16 | 76.6 |
| MS.gene045080.t1 | MTR_1g051165 | 32.161 | 199 | 115 | 7 | 15 | 195 | 18 | 214 | 3.56e-16 | 77.0 |
| MS.gene045080.t1 | MTR_7g080410 | 27.341 | 267 | 156 | 8 | 15 | 270 | 42 | 281 | 5.92e-16 | 77.0 |
| MS.gene045080.t1 | MTR_3g113870 | 28.729 | 181 | 121 | 3 | 17 | 191 | 26 | 204 | 7.98e-15 | 72.4 |
| MS.gene045080.t1 | MTR_7g107670 | 31.148 | 183 | 117 | 4 | 15 | 191 | 37 | 216 | 2.19e-14 | 72.4 |
| MS.gene045080.t1 | MTR_7g080410 | 30.612 | 196 | 122 | 6 | 15 | 199 | 42 | 234 | 2.56e-14 | 72.0 |
| MS.gene045080.t1 | MTR_1g082760 | 30.769 | 195 | 109 | 7 | 15 | 191 | 44 | 230 | 4.90e-14 | 71.2 |
| MS.gene045080.t1 | MTR_4g052350 | 29.947 | 187 | 109 | 5 | 15 | 188 | 18 | 195 | 1.20e-12 | 67.0 |
| MS.gene045080.t1 | MTR_4g052320 | 28.333 | 180 | 121 | 4 | 15 | 188 | 12 | 189 | 1.27e-12 | 66.6 |
| MS.gene045080.t1 | MTR_4g052300 | 28.889 | 180 | 120 | 4 | 15 | 188 | 12 | 189 | 2.00e-12 | 66.2 |
| MS.gene045080.t1 | MTR_1563s0010 | 33.871 | 186 | 111 | 4 | 16 | 190 | 114 | 298 | 5.13e-12 | 65.9 |
| MS.gene045080.t1 | MTR_7g110140 | 30.846 | 201 | 126 | 7 | 15 | 208 | 10 | 204 | 9.85e-12 | 64.3 |
| MS.gene045080.t1 | MTR_4g052340 | 27.273 | 187 | 128 | 4 | 15 | 195 | 18 | 202 | 2.13e-11 | 63.2 |
| MS.gene045080.t1 | MTR_7g063390 | 31.967 | 122 | 82 | 1 | 71 | 191 | 80 | 201 | 2.44e-11 | 63.2 |
| MS.gene045080.t1 | MTR_6g035395 | 31.638 | 177 | 106 | 5 | 15 | 188 | 9 | 173 | 4.86e-11 | 62.0 |
| MS.gene045080.t1 | MTR_7g063330 | 26.866 | 201 | 138 | 5 | 3 | 195 | 5 | 204 | 6.60e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045080.t1 | AT5G10050 | 63.971 | 272 | 98 | 0 | 11 | 282 | 5 | 276 | 4.54e-138 | 390 |
| MS.gene045080.t1 | AT5G65205 | 64.207 | 271 | 97 | 0 | 11 | 281 | 6 | 276 | 7.00e-136 | 385 |
| MS.gene045080.t1 | AT5G50600 | 31.915 | 188 | 118 | 5 | 15 | 195 | 49 | 233 | 7.56e-21 | 91.3 |
| MS.gene045080.t1 | AT5G50700 | 31.915 | 188 | 118 | 5 | 15 | 195 | 49 | 233 | 7.56e-21 | 91.3 |
| MS.gene045080.t1 | AT3G03330 | 27.239 | 268 | 161 | 7 | 15 | 270 | 45 | 290 | 8.33e-21 | 90.9 |
| MS.gene045080.t1 | AT3G47350 | 31.053 | 190 | 117 | 6 | 15 | 195 | 48 | 232 | 9.43e-19 | 84.7 |
| MS.gene045080.t1 | AT3G47350 | 31.053 | 190 | 117 | 6 | 15 | 195 | 48 | 232 | 2.15e-18 | 84.0 |
| MS.gene045080.t1 | AT1G54870 | 32.843 | 204 | 116 | 6 | 5 | 191 | 75 | 274 | 2.79e-18 | 84.0 |
| MS.gene045080.t1 | AT1G54870 | 32.843 | 204 | 116 | 6 | 5 | 191 | 73 | 272 | 2.88e-18 | 83.6 |
| MS.gene045080.t1 | AT1G10310 | 31.068 | 206 | 129 | 6 | 16 | 211 | 20 | 222 | 5.41e-17 | 78.6 |
| MS.gene045080.t1 | AT1G67730 | 29.648 | 199 | 110 | 5 | 17 | 195 | 55 | 243 | 6.25e-17 | 79.7 |
| MS.gene045080.t1 | AT2G17845 | 32.663 | 199 | 112 | 8 | 15 | 195 | 51 | 245 | 1.42e-16 | 78.6 |
| MS.gene045080.t1 | AT3G05260 | 30.542 | 203 | 121 | 5 | 5 | 191 | 28 | 226 | 3.02e-16 | 77.4 |
| MS.gene045080.t1 | AT1G52340 | 30.729 | 192 | 119 | 5 | 15 | 195 | 22 | 210 | 1.94e-14 | 72.4 |
| MS.gene045080.t1 | AT5G50690 | 28.837 | 215 | 134 | 8 | 2 | 209 | 43 | 245 | 2.45e-14 | 72.0 |
| MS.gene045080.t1 | AT5G50590 | 28.837 | 215 | 134 | 8 | 2 | 209 | 43 | 245 | 2.45e-14 | 72.0 |
| MS.gene045080.t1 | AT4G03140 | 29.947 | 187 | 122 | 4 | 15 | 195 | 82 | 265 | 3.14e-14 | 72.4 |
| MS.gene045080.t1 | AT5G50690 | 29.557 | 203 | 126 | 7 | 2 | 197 | 43 | 235 | 3.37e-14 | 71.2 |
| MS.gene045080.t1 | AT5G50590 | 29.557 | 203 | 126 | 7 | 2 | 197 | 43 | 235 | 3.37e-14 | 71.2 |
| MS.gene045080.t1 | AT1G24360 | 32.086 | 187 | 120 | 4 | 15 | 195 | 78 | 263 | 3.69e-14 | 72.0 |
| MS.gene045080.t1 | AT1G63380 | 29.949 | 197 | 118 | 7 | 15 | 195 | 19 | 211 | 1.29e-13 | 69.7 |
| MS.gene045080.t1 | AT1G63380 | 29.949 | 197 | 118 | 7 | 15 | 195 | 23 | 215 | 1.36e-13 | 69.7 |
| MS.gene045080.t1 | AT1G63380 | 29.949 | 197 | 118 | 7 | 15 | 195 | 26 | 218 | 1.56e-13 | 69.7 |
| MS.gene045080.t1 | AT1G63380 | 29.949 | 197 | 118 | 7 | 15 | 195 | 21 | 213 | 1.74e-13 | 69.3 |
| MS.gene045080.t1 | AT3G03350 | 40.476 | 84 | 50 | 0 | 110 | 193 | 183 | 266 | 4.96e-13 | 68.2 |
| MS.gene045080.t1 | AT3G03350 | 39.773 | 88 | 53 | 0 | 109 | 196 | 268 | 355 | 6.56e-13 | 68.6 |
| MS.gene045080.t1 | AT5G50770 | 30.319 | 188 | 121 | 5 | 15 | 195 | 49 | 233 | 1.58e-12 | 67.4 |
| MS.gene045080.t1 | AT3G29260 | 30.612 | 196 | 127 | 5 | 6 | 195 | 2 | 194 | 1.73e-12 | 66.2 |
| MS.gene045080.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 43 | 230 | 2.70e-12 | 66.2 |
| MS.gene045080.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 45 | 232 | 2.79e-12 | 66.2 |
| MS.gene045080.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 7 | 194 | 5.31e-12 | 65.1 |
| MS.gene045080.t1 | AT1G24470 | 26.020 | 196 | 133 | 5 | 17 | 202 | 56 | 249 | 7.85e-12 | 65.1 |
| MS.gene045080.t1 | AT4G10020 | 27.099 | 262 | 160 | 11 | 6 | 254 | 44 | 287 | 9.72e-12 | 65.1 |
| MS.gene045080.t1 | AT3G46170 | 27.979 | 193 | 126 | 7 | 15 | 195 | 30 | 221 | 7.32e-11 | 62.0 |
Find 74 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAGAACTTGGACATTT+TGG | 0.143636 | 3.4:-81415017 | MS.gene045080:CDS |
| ATGCAGGTGGTTTCTTTCTT+AGG | 0.197151 | 3.4:+81414799 | None:intergenic |
| CGTTAGTATCAAACGTGTTT+TGG | 0.275941 | 3.4:+81415946 | None:intergenic |
| TGCGTTAGCCTCTGGACCTT+GGG | 0.276610 | 3.4:-81415313 | MS.gene045080:CDS |
| TGGAGCTGTGAAGTCAAATA+TGG | 0.307037 | 3.4:-81414970 | MS.gene045080:CDS |
| ACGTTCTACAATGGCGGATT+TGG | 0.318601 | 3.4:-81416135 | MS.gene045080:CDS |
| ACGTTTGATACTAACGTCTT+TGG | 0.327209 | 3.4:-81415939 | MS.gene045080:intron |
| CCACCTGCATGGTTCTCTTA+TGG | 0.348092 | 3.4:-81414786 | MS.gene045080:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3.4:-81415364 | MS.gene045080:CDS |
| CTCTGGCATGCGGTTGTAGA+TGG | 0.375038 | 3.4:+81414932 | None:intergenic |
| CTGCGTTAGCCTCTGGACCT+TGG | 0.392453 | 3.4:-81415314 | MS.gene045080:CDS |
| AAGTCAAATATGGGAAATTC+CGG | 0.392829 | 3.4:-81414960 | MS.gene045080:CDS |
| TAACGCTGGTGTTCCTTGTA+CGG | 0.415470 | 3.4:-81416000 | MS.gene045080:CDS |
| AGTTCTTGAAGGAAGAATCT+AGG | 0.420814 | 3.4:+81416104 | None:intergenic |
| GGTTGCAGTGGAGGAGGTAT+TGG | 0.435778 | 3.4:-81416218 | MS.gene045080:CDS |
| ATTGCAGCTGTTGGCTGCGA+AGG | 0.447096 | 3.4:+81416178 | None:intergenic |
| ATATTTGACTTCACAGCTCC+AGG | 0.451839 | 3.4:+81414972 | None:intergenic |
| AACTCTGCTCGCGCTTTCAT+CGG | 0.452231 | 3.4:+81416070 | None:intergenic |
| AGTGTTACTGCGTTAGCCTC+TGG | 0.452738 | 3.4:-81415321 | MS.gene045080:CDS |
| TGTTTAGCAAACTCGTCTGT+AGG | 0.453270 | 3.4:+81414837 | None:intergenic |
| TCTCGGATTACTGCTTCAAA+TGG | 0.458480 | 3.4:+81414894 | None:intergenic |
| CCATGTGAGGAACCACAGCC+TGG | 0.464735 | 3.4:+81415379 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+GGG | 0.465184 | 3.4:+81414838 | None:intergenic |
| ACTGAACATTGAGTTCTTGA+AGG | 0.470500 | 3.4:+81416093 | None:intergenic |
| AGGTTCCATGAGAATGATCC+AGG | 0.481555 | 3.4:-81415397 | MS.gene045080:CDS |
| TGATCAAGAAGACTCAAAAC+TGG | 0.489269 | 3.4:-81416255 | MS.gene045080:CDS |
| CTCATCACAGGTTGCAGTGG+AGG | 0.505784 | 3.4:-81416227 | MS.gene045080:CDS |
| TGCAACCACATTGCAGCTGT+TGG | 0.505823 | 3.4:+81416169 | None:intergenic |
| CCAGGCTGTGGTTCCTCACA+TGG | 0.506294 | 3.4:-81415379 | MS.gene045080:CDS |
| CTTTCTTAGGATAGCAGCTA+CGG | 0.512577 | 3.4:+81414812 | None:intergenic |
| AAACTGGTGGTTCTCATCAC+AGG | 0.512865 | 3.4:-81416239 | MS.gene045080:CDS |
| GATGTTCTTGTTAATAACGC+TGG | 0.518173 | 3.4:-81416014 | MS.gene045080:CDS |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3.4:+81414941 | None:intergenic |
| TGGTTCCTCACATGGCAACT+AGG | 0.522562 | 3.4:-81415371 | MS.gene045080:CDS |
| GATGTTGTGAGTGTTGTCCC+TGG | 0.523404 | 3.4:-81414990 | MS.gene045080:CDS |
| ATCACAGGTTGCAGTGGAGG+AGG | 0.526896 | 3.4:-81416224 | MS.gene045080:CDS |
| TGAAAGCGCGAGCAGAGTTG+TGG | 0.532251 | 3.4:-81416066 | MS.gene045080:CDS |
| GCAATGTGGTTGCAACCAGC+AGG | 0.532348 | 3.4:-81416160 | MS.gene045080:CDS |
| GGAGCTGTGAAGTCAAATAT+GGG | 0.538147 | 3.4:-81414969 | MS.gene045080:CDS |
| ATGCTTTGACAGATACATTG+AGG | 0.541960 | 3.4:-81415257 | MS.gene045080:intron |
| AACGCTGGTGTTCCTTGTAC+GGG | 0.542007 | 3.4:-81415999 | MS.gene045080:CDS |
| TGGCAATTATTCTACTGTCA+TGG | 0.543525 | 3.4:-81414766 | MS.gene045080:CDS |
| CACAGCCTGGATCATTCTCA+TGG | 0.550562 | 3.4:+81415392 | None:intergenic |
| GTTCTCATCACAGGTTGCAG+TGG | 0.550811 | 3.4:-81416230 | MS.gene045080:CDS |
| TTGTACGGGCCCACTTGCTG+AGG | 0.553648 | 3.4:-81415985 | MS.gene045080:CDS |
| TCAGCAAGTGGGCCCGTACA+AGG | 0.556211 | 3.4:+81415987 | None:intergenic |
| GGGAGAGGAACCTCAGCAAG+TGG | 0.557988 | 3.4:+81415975 | None:intergenic |
| TCAACATACAGATTAGAACT+TGG | 0.558737 | 3.4:-81415026 | MS.gene045080:intron |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3.4:+81415366 | None:intergenic |
| CATGAGAATGATCCAGGCTG+TGG | 0.572883 | 3.4:-81415391 | MS.gene045080:CDS |
| GGTTTGAACAGTTTCCACTC+TGG | 0.574075 | 3.4:+81414915 | None:intergenic |
| CATTGTAGAACGTGACCTGC+TGG | 0.575467 | 3.4:+81416145 | None:intergenic |
| GAGAGAGAGCTCTACTGTCT+CGG | 0.584024 | 3.4:-81414875 | MS.gene045080:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3.4:-81415363 | MS.gene045080:CDS |
| TTTAGCAAACTCGTCTGTAG+GGG | 0.590181 | 3.4:+81414839 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3.4:-81415345 | MS.gene045080:CDS |
| TTAGCCTCTGGACCTTGGGG+CGG | 0.599080 | 3.4:-81415309 | MS.gene045080:CDS |
| TTGCCATAAGAGAACCATGC+AGG | 0.601420 | 3.4:+81414783 | None:intergenic |
| TATTTGACTTCACAGCTCCA+GGG | 0.611695 | 3.4:+81414973 | None:intergenic |
| TAAGAAAGAAACCACCTGCA+TGG | 0.614484 | 3.4:-81414797 | MS.gene045080:CDS |
| ACAGTTTCCACTCTGGCATG+CGG | 0.615919 | 3.4:+81414922 | None:intergenic |
| GCGTTAGCCTCTGGACCTTG+GGG | 0.617062 | 3.4:-81415312 | MS.gene045080:CDS |
| GAGACAGTAGAGCTCTCTCT+CGG | 0.621667 | 3.4:+81414877 | None:intergenic |
| CAGCAGGTCACGTTCTACAA+TGG | 0.634429 | 3.4:-81416144 | MS.gene045080:CDS |
| GCACTATAAGTACCGCCCCA+AGG | 0.642162 | 3.4:+81415297 | None:intergenic |
| CGCAGCCAACAGCTGCAATG+TGG | 0.642199 | 3.4:-81416174 | MS.gene045080:CDS |
| CAGGTCACGTTCTACAATGG+CGG | 0.644489 | 3.4:-81416141 | MS.gene045080:CDS |
| GGAGAGGAACCTCAGCAAGT+GGG | 0.652249 | 3.4:+81415976 | None:intergenic |
| TCAAGAAGACTCAAAACTGG+TGG | 0.662392 | 3.4:-81416252 | MS.gene045080:CDS |
| AGTACCGCCCCAAGGTCCAG+AGG | 0.667983 | 3.4:+81415305 | None:intergenic |
| CCATAAGAGAACCATGCAGG+TGG | 0.674106 | 3.4:+81414786 | None:intergenic |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3.4:+81414726 | None:intergenic |
| TCTACAACCGCATGCCAGAG+TGG | 0.686871 | 3.4:-81414929 | MS.gene045080:CDS |
| AGAGAGCTCTACTGTCTCGG+AGG | 0.716254 | 3.4:-81414872 | MS.gene045080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTTTGATATG+TGG | - | chr3.4:81415767-81415786 | MS.gene045080:intron | 10.0% |
| !! | ATAATTCAAAGTAATAATGT+CGG | + | chr3.4:81415189-81415208 | None:intergenic | 15.0% |
| !! | ATTAAAATAAGTTTGAAGAT+AGG | + | chr3.4:81415757-81415776 | None:intergenic | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | - | chr3.4:81415462-81415481 | MS.gene045080:intron | 15.0% |
| !! | ACAACAATTATAAGCTATAA+AGG | + | chr3.4:81415928-81415947 | None:intergenic | 20.0% |
| !! | TTCTCAACAAACAAAAATAT+TGG | - | chr3.4:81415215-81415234 | MS.gene045080:intron | 20.0% |
| !!! | GATACTGTTTTGAATAAATT+TGG | - | chr3.4:81414935-81414954 | MS.gene045080:CDS | 20.0% |
| !!! | TAGAATTTTTATGTTAGACT+TGG | - | chr3.4:81415288-81415307 | MS.gene045080:CDS | 20.0% |
| !!! | TGTTAATAGGTTTTAGTTTT+TGG | - | chr3.4:81415475-81415494 | MS.gene045080:intron | 20.0% |
| ! | ATCAAATCAAATCAACAAGA+TGG | - | chr3.4:81415801-81415820 | MS.gene045080:intron | 25.0% |
| AAGTCAAATATGGGAAATTC+CGG | - | chr3.4:81416019-81416038 | MS.gene045080:CDS | 30.0% | |
| AATAATTATGTCTGTAAGGC+AGG | - | chr3.4:81415116-81415135 | MS.gene045080:intron | 30.0% | |
| ATAAGCTATAAAGGTCAGAT+TGG | + | chr3.4:81415919-81415938 | None:intergenic | 30.0% | |
| TCAACATACAGATTAGAACT+TGG | - | chr3.4:81415953-81415972 | MS.gene045080:CDS | 30.0% | |
| TCAGTGCATTTATGTTTGTA+TGG | - | chr3.4:81415324-81415343 | MS.gene045080:CDS | 30.0% | |
| TCCAAAACAAAAGAACTTCA+AGG | - | chr3.4:81415347-81415366 | MS.gene045080:CDS | 30.0% | |
| TGGGAATAATTATGTCTGTA+AGG | - | chr3.4:81415112-81415131 | MS.gene045080:intron | 30.0% | |
| ! | AGATTAGAACTTGGACATTT+TGG | - | chr3.4:81415962-81415981 | MS.gene045080:CDS | 30.0% |
| !! | ACCTTGAAGTTCTTTTGTTT+TGG | + | chr3.4:81415351-81415370 | None:intergenic | 30.0% |
| !!! | GGTTTTAGTTTTTGGTTTTG+TGG | - | chr3.4:81415483-81415502 | MS.gene045080:intron | 30.0% |
| ACGATTTCTATCGAAACAAG+CGG | + | chr3.4:81415840-81415859 | None:intergenic | 35.0% | |
| ACGTTTGATACTAACGTCTT+TGG | - | chr3.4:81415040-81415059 | MS.gene045080:intron | 35.0% | |
| ACTGAACATTGAGTTCTTGA+AGG | + | chr3.4:81414889-81414908 | None:intergenic | 35.0% | |
| AGTTCTTGAAGGAAGAATCT+AGG | + | chr3.4:81414878-81414897 | None:intergenic | 35.0% | |
| ATGCTTTGACAGATACATTG+AGG | - | chr3.4:81415722-81415741 | MS.gene045080:intron | 35.0% | |
| GATGTTCTTGTTAATAACGC+TGG | - | chr3.4:81414965-81414984 | MS.gene045080:CDS | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | - | chr3.4:81415433-81415452 | MS.gene045080:intron | 35.0% | |
| GTCTATATTCGTGCTTCATA+GGG | - | chr3.4:81415260-81415279 | MS.gene045080:CDS | 35.0% | |
| TGATCAAGAAGACTCAAAAC+TGG | - | chr3.4:81414724-81414743 | MS.gene045080:CDS | 35.0% | |
| TGGCAATTATTCTACTGTCA+TGG | - | chr3.4:81416213-81416232 | MS.gene045080:CDS | 35.0% | |
| TGTCTATATTCGTGCTTCAT+AGG | - | chr3.4:81415259-81415278 | MS.gene045080:CDS | 35.0% | |
| TTCGATAGAAATCGTTGCTT+TGG | - | chr3.4:81415845-81415864 | MS.gene045080:intron | 35.0% | |
| TTGATACTAACGTCTTTGGT+TGG | - | chr3.4:81415044-81415063 | MS.gene045080:intron | 35.0% | |
| ! | ATACGCCATTTAGAATCTAG+TGG | - | chr3.4:81415883-81415902 | MS.gene045080:intron | 35.0% |
| ! | CGTTAGTATCAAACGTGTTT+TGG | + | chr3.4:81415036-81415055 | None:intergenic | 35.0% |
| ACACTAGTACCAGGTACAAT+TGG | - | chr3.4:81415420-81415439 | MS.gene045080:intron | 40.0% | |
| AGAAAGTCTCTAACACAGAG+AGG | + | chr3.4:81416256-81416275 | None:intergenic | 40.0% | |
| ATGCAGGTGGTTTCTTTCTT+AGG | + | chr3.4:81416183-81416202 | None:intergenic | 40.0% | |
| CACTAGTACCAGGTACAATT+GGG | - | chr3.4:81415421-81415440 | MS.gene045080:intron | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | - | chr3.4:81415634-81415653 | MS.gene045080:intron | 40.0% | |
| CTTTCTTAGGATAGCAGCTA+CGG | + | chr3.4:81416170-81416189 | None:intergenic | 40.0% | |
| GGAGCTGTGAAGTCAAATAT+GGG | - | chr3.4:81416010-81416029 | MS.gene045080:CDS | 40.0% | |
| GTTAGTAGTACACTAGTACC+AGG | - | chr3.4:81415411-81415430 | MS.gene045080:intron | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+GGG | + | chr3.4:81416144-81416163 | None:intergenic | 40.0% | |
| TAAGAAAGAAACCACCTGCA+TGG | - | chr3.4:81416182-81416201 | MS.gene045080:CDS | 40.0% | |
| TCAAGAAGACTCAAAACTGG+TGG | - | chr3.4:81414727-81414746 | MS.gene045080:CDS | 40.0% | |
| TCCAGCCACTAGATTCTAAA+TGG | + | chr3.4:81415891-81415910 | None:intergenic | 40.0% | |
| TCTCGGATTACTGCTTCAAA+TGG | + | chr3.4:81416088-81416107 | None:intergenic | 40.0% | |
| TGGAGCTGTGAAGTCAAATA+TGG | - | chr3.4:81416009-81416028 | MS.gene045080:CDS | 40.0% | |
| TGTTTACACCCAATTGTACC+TGG | + | chr3.4:81415432-81415451 | None:intergenic | 40.0% | |
| TGTTTAGCAAACTCGTCTGT+AGG | + | chr3.4:81416145-81416164 | None:intergenic | 40.0% | |
| TTTAGCAAACTCGTCTGTAG+GGG | + | chr3.4:81416143-81416162 | None:intergenic | 40.0% | |
| ! | ATATTTGACTTCACAGCTCC+AGG | + | chr3.4:81416010-81416029 | None:intergenic | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | + | chr3.4:81416009-81416028 | None:intergenic | 40.0% |
| !! | CAAACGTGTTTTGGATTGCA+GGG | + | chr3.4:81415027-81415046 | None:intergenic | 40.0% |
| !! | TAATAATGTCGGTGTCGTGA+GGG | + | chr3.4:81415178-81415197 | None:intergenic | 40.0% |
| !! | TCAAACGTGTTTTGGATTGC+AGG | + | chr3.4:81415028-81415047 | None:intergenic | 40.0% |
| AAACTGGTGGTTCTCATCAC+AGG | - | chr3.4:81414740-81414759 | MS.gene045080:CDS | 45.0% | |
| AGGTTCCATGAGAATGATCC+AGG | - | chr3.4:81415582-81415601 | MS.gene045080:intron | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | - | chr3.4:81415616-81415635 | MS.gene045080:intron | 45.0% | |
| CTATCACTGCATACATGTGC+AGG | - | chr3.4:81415562-81415581 | MS.gene045080:intron | 45.0% | |
| GGTTTGAACAGTTTCCACTC+TGG | + | chr3.4:81416067-81416086 | None:intergenic | 45.0% | |
| TAACGCTGGTGTTCCTTGTA+CGG | - | chr3.4:81414979-81414998 | MS.gene045080:CDS | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | - | chr3.4:81415615-81415634 | MS.gene045080:intron | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | + | chr3.4:81415616-81415635 | None:intergenic | 45.0% | |
| TTGCCATAAGAGAACCATGC+AGG | + | chr3.4:81416199-81416218 | None:intergenic | 45.0% | |
| ! | GCCATTTAGAATCTAGTGGC+TGG | - | chr3.4:81415887-81415906 | MS.gene045080:intron | 45.0% |
| !! | ACGTTCTACAATGGCGGATT+TGG | - | chr3.4:81414844-81414863 | MS.gene045080:CDS | 45.0% |
| !! | GTAATAATGTCGGTGTCGTG+AGG | + | chr3.4:81415179-81415198 | None:intergenic | 45.0% |
| !!! | ATAAAAATTGTTTTTTTAAT+TGG | - | chr3.4:81415092-81415111 | MS.gene045080:intron | 5.0% |
| !!! | TAAAAATTGTTTTTTTAATT+GGG | - | chr3.4:81415093-81415112 | MS.gene045080:intron | 5.0% |
| AACGCTGGTGTTCCTTGTAC+GGG | - | chr3.4:81414980-81414999 | MS.gene045080:CDS | 50.0% | |
| AACTCTGCTCGCGCTTTCAT+CGG | + | chr3.4:81414912-81414931 | None:intergenic | 50.0% | |
| ACAGTTTCCACTCTGGCATG+CGG | + | chr3.4:81416060-81416079 | None:intergenic | 50.0% | |
| ACTGACACGTCTCTGACATC+GGG | + | chr3.4:81415147-81415166 | None:intergenic | 50.0% | |
| CACAGCCTGGATCATTCTCA+TGG | + | chr3.4:81415590-81415609 | None:intergenic | 50.0% | |
| CACTGACACGTCTCTGACAT+CGG | + | chr3.4:81415148-81415167 | None:intergenic | 50.0% | |
| CAGCAGGTCACGTTCTACAA+TGG | - | chr3.4:81414835-81414854 | MS.gene045080:CDS | 50.0% | |
| CAGGTCACGTTCTACAATGG+CGG | - | chr3.4:81414838-81414857 | MS.gene045080:CDS | 50.0% | |
| CATGAGAATGATCCAGGCTG+TGG | - | chr3.4:81415588-81415607 | MS.gene045080:intron | 50.0% | |
| CATTGTAGAACGTGACCTGC+TGG | + | chr3.4:81414837-81414856 | None:intergenic | 50.0% | |
| CCACCTGCATGGTTCTCTTA+TGG | - | chr3.4:81416193-81416212 | MS.gene045080:CDS | 50.0% | |
| CCATAAGAGAACCATGCAGG+TGG | + | chr3.4:81416196-81416215 | None:intergenic | 50.0% | |
| GAGACAGTAGAGCTCTCTCT+CGG | + | chr3.4:81416105-81416124 | None:intergenic | 50.0% | |
| GAGAGAGAGCTCTACTGTCT+CGG | - | chr3.4:81416104-81416123 | MS.gene045080:CDS | 50.0% | |
| GTTCTCATCACAGGTTGCAG+TGG | - | chr3.4:81414749-81414768 | MS.gene045080:CDS | 50.0% | |
| TGCAACCACATTGCAGCTGT+TGG | + | chr3.4:81414813-81414832 | None:intergenic | 50.0% | |
| TGGTTCCTCACATGGCAACT+AGG | - | chr3.4:81415608-81415627 | MS.gene045080:intron | 50.0% | |
| ! | AGTGTTACTGCGTTAGCCTC+TGG | - | chr3.4:81415658-81415677 | MS.gene045080:intron | 50.0% |
| ! | GATGTTGTGAGTGTTGTCCC+TGG | - | chr3.4:81415989-81416008 | MS.gene045080:CDS | 50.0% |
| !! | GTGTTTTGGATTGCAGGGAG+AGG | + | chr3.4:81415022-81415041 | None:intergenic | 50.0% |
| AGAGAGCTCTACTGTCTCGG+AGG | - | chr3.4:81416107-81416126 | MS.gene045080:CDS | 55.0% | |
| ATCACAGGTTGCAGTGGAGG+AGG | - | chr3.4:81414755-81414774 | MS.gene045080:CDS | 55.0% | |
| CTCATCACAGGTTGCAGTGG+AGG | - | chr3.4:81414752-81414771 | MS.gene045080:CDS | 55.0% | |
| CTCTGGCATGCGGTTGTAGA+TGG | + | chr3.4:81416050-81416069 | None:intergenic | 55.0% | |
| GCAATGTGGTTGCAACCAGC+AGG | - | chr3.4:81414819-81414838 | MS.gene045080:CDS | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | + | chr3.4:81416041-81416060 | None:intergenic | 55.0% | |
| GGAGAGGAACCTCAGCAAGT+GGG | + | chr3.4:81415006-81415025 | None:intergenic | 55.0% | |
| TCTACAACCGCATGCCAGAG+TGG | - | chr3.4:81416050-81416069 | MS.gene045080:CDS | 55.0% | |
| ! | ATTGCAGCTGTTGGCTGCGA+AGG | + | chr3.4:81414804-81414823 | None:intergenic | 55.0% |
| ! | GCACTATAAGTACCGCCCCA+AGG | + | chr3.4:81415685-81415704 | None:intergenic | 55.0% |
| ! | GGTTGCAGTGGAGGAGGTAT+TGG | - | chr3.4:81414761-81414780 | MS.gene045080:CDS | 55.0% |
| ! | TGAAAGCGCGAGCAGAGTTG+TGG | - | chr3.4:81414913-81414932 | MS.gene045080:CDS | 55.0% |
| ! | TGCGTTAGCCTCTGGACCTT+GGG | - | chr3.4:81415666-81415685 | MS.gene045080:intron | 55.0% |
| CCAGGCTGTGGTTCCTCACA+TGG | - | chr3.4:81415600-81415619 | MS.gene045080:intron | 60.0% | |
| CCATGTGAGGAACCACAGCC+TGG | + | chr3.4:81415603-81415622 | None:intergenic | 60.0% | |
| CGCAGCCAACAGCTGCAATG+TGG | - | chr3.4:81414805-81414824 | MS.gene045080:CDS | 60.0% | |
| GGGAGAGGAACCTCAGCAAG+TGG | + | chr3.4:81415007-81415026 | None:intergenic | 60.0% | |
| TCAGCAAGTGGGCCCGTACA+AGG | + | chr3.4:81414995-81415014 | None:intergenic | 60.0% | |
| TTAGCCTCTGGACCTTGGGG+CGG | - | chr3.4:81415670-81415689 | MS.gene045080:intron | 60.0% | |
| ! | CTGCGTTAGCCTCTGGACCT+TGG | - | chr3.4:81415665-81415684 | MS.gene045080:intron | 60.0% |
| ! | GCGTTAGCCTCTGGACCTTG+GGG | - | chr3.4:81415667-81415686 | MS.gene045080:intron | 60.0% |
| ! | TTGTACGGGCCCACTTGCTG+AGG | - | chr3.4:81414994-81415013 | MS.gene045080:CDS | 60.0% |
| AGTACCGCCCCAAGGTCCAG+AGG | + | chr3.4:81415677-81415696 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 81414704 | 81416297 | 81414704 | ID=MS.gene045080 |
| chr3.4 | mRNA | 81414704 | 81416297 | 81414704 | ID=MS.gene045080.t1;Parent=MS.gene045080 |
| chr3.4 | exon | 81415940 | 81416297 | 81415940 | ID=MS.gene045080.t1.exon1;Parent=MS.gene045080.t1 |
| chr3.4 | CDS | 81415940 | 81416297 | 81415940 | ID=cds.MS.gene045080.t1;Parent=MS.gene045080.t1 |
| chr3.4 | exon | 81415258 | 81415417 | 81415258 | ID=MS.gene045080.t1.exon2;Parent=MS.gene045080.t1 |
| chr3.4 | CDS | 81415258 | 81415417 | 81415258 | ID=cds.MS.gene045080.t1;Parent=MS.gene045080.t1 |
| chr3.4 | exon | 81414704 | 81415037 | 81414704 | ID=MS.gene045080.t1.exon3;Parent=MS.gene045080.t1 |
| chr3.4 | CDS | 81414704 | 81415037 | 81414704 | ID=cds.MS.gene045080.t1;Parent=MS.gene045080.t1 |
| Gene Sequence |
| Protein sequence |
