Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052246.t1 | XP_003602013.2 | 95.1 | 283 | 14 | 0 | 1 | 283 | 1 | 283 | 1.60E-148 | 535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052246.t1 | G4N286 | 31.2 | 269 | 180 | 4 | 17 | 283 | 10 | 275 | 8.8e-31 | 135.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052246.t1 | G7J4E1 | 95.1 | 283 | 14 | 0 | 1 | 283 | 16 | 298 | 1.1e-148 | 535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052244 | MS.gene052246 | 0.892425 | 1.61E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045080 | MS.gene052246 | PPI |
| MS.gene045079 | MS.gene052246 | PPI |
| MS.gene013838 | MS.gene052246 | PPI |
| MS.gene052246 | MS.gene013839 | PPI |
| MS.gene013840 | MS.gene052246 | PPI |
| MS.gene015282 | MS.gene052246 | PPI |
| MS.gene052246 | MS.gene43514 | PPI |
| MS.gene09624 | MS.gene052246 | PPI |
| MS.gene013841 | MS.gene052246 | PPI |
| MS.gene052244 | MS.gene052246 | PPI |
| MS.gene75444 | MS.gene052246 | PPI |
| MS.gene052246 | MS.gene75445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052246.t1 | MTR_3g087850 | 95.053 | 283 | 14 | 0 | 1 | 283 | 16 | 298 | 0.0 | 565 |
| MS.gene052246.t1 | MTR_3g087860 | 87.279 | 283 | 36 | 0 | 1 | 283 | 1 | 283 | 0.0 | 499 |
| MS.gene052246.t1 | MTR_4g097510 | 46.617 | 266 | 139 | 2 | 15 | 278 | 6 | 270 | 1.42e-84 | 255 |
| MS.gene052246.t1 | MTR_4g058810 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 4.66e-22 | 93.2 |
| MS.gene052246.t1 | MTR_4g058840 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 7.93e-22 | 92.4 |
| MS.gene052246.t1 | MTR_4g058820 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 7.93e-22 | 92.4 |
| MS.gene052246.t1 | MTR_3g085740 | 32.086 | 187 | 120 | 3 | 15 | 195 | 79 | 264 | 1.15e-19 | 87.4 |
| MS.gene052246.t1 | MTR_8g096620 | 31.496 | 254 | 147 | 11 | 15 | 254 | 49 | 289 | 1.21e-19 | 87.8 |
| MS.gene052246.t1 | MTR_8g096580 | 34.737 | 190 | 113 | 6 | 15 | 196 | 49 | 235 | 2.73e-19 | 86.3 |
| MS.gene052246.t1 | MTR_3g086210 | 30.412 | 194 | 119 | 5 | 17 | 197 | 57 | 247 | 8.30e-18 | 82.0 |
| MS.gene052246.t1 | MTR_1g051165 | 32.663 | 199 | 114 | 7 | 15 | 195 | 18 | 214 | 1.81e-17 | 80.9 |
| MS.gene052246.t1 | MTR_7g080410 | 27.985 | 268 | 153 | 9 | 15 | 270 | 42 | 281 | 1.53e-16 | 78.6 |
| MS.gene052246.t1 | MTR_7g105590 | 30.220 | 182 | 121 | 4 | 15 | 191 | 12 | 192 | 1.86e-16 | 76.3 |
| MS.gene052246.t1 | MTR_7g113650 | 31.472 | 197 | 108 | 6 | 13 | 191 | 43 | 230 | 8.13e-16 | 76.3 |
| MS.gene052246.t1 | MTR_3g113870 | 28.415 | 183 | 123 | 3 | 17 | 193 | 26 | 206 | 2.22e-15 | 73.9 |
| MS.gene052246.t1 | MTR_7g080410 | 32.487 | 197 | 117 | 8 | 15 | 199 | 42 | 234 | 3.26e-15 | 74.7 |
| MS.gene052246.t1 | MTR_7g107670 | 30.811 | 185 | 119 | 4 | 15 | 193 | 37 | 218 | 4.54e-15 | 74.3 |
| MS.gene052246.t1 | MTR_1g082760 | 30.769 | 195 | 109 | 6 | 15 | 191 | 44 | 230 | 6.44e-15 | 73.6 |
| MS.gene052246.t1 | MTR_4g052320 | 29.444 | 180 | 119 | 4 | 15 | 188 | 12 | 189 | 1.79e-14 | 72.0 |
| MS.gene052246.t1 | MTR_4g052350 | 31.016 | 187 | 107 | 5 | 15 | 188 | 18 | 195 | 1.88e-14 | 72.0 |
| MS.gene052246.t1 | MTR_4g052300 | 30.000 | 180 | 118 | 4 | 15 | 188 | 12 | 189 | 2.52e-14 | 71.6 |
| MS.gene052246.t1 | MTR_3g086190 | 29.126 | 206 | 130 | 6 | 17 | 208 | 50 | 253 | 4.78e-14 | 71.6 |
| MS.gene052246.t1 | MTR_1563s0010 | 34.946 | 186 | 109 | 4 | 16 | 190 | 114 | 298 | 2.17e-13 | 70.1 |
| MS.gene052246.t1 | MTR_7g110140 | 31.841 | 201 | 124 | 7 | 15 | 208 | 10 | 204 | 2.80e-13 | 68.6 |
| MS.gene052246.t1 | MTR_4g052340 | 28.342 | 187 | 126 | 4 | 15 | 195 | 18 | 202 | 2.81e-13 | 68.6 |
| MS.gene052246.t1 | MTR_2g022600 | 32.418 | 182 | 109 | 5 | 16 | 188 | 38 | 214 | 2.58e-12 | 66.6 |
| MS.gene052246.t1 | MTR_6g035395 | 32.203 | 177 | 105 | 5 | 15 | 188 | 9 | 173 | 7.37e-12 | 64.3 |
| MS.gene052246.t1 | MTR_2g090165 | 30.159 | 189 | 116 | 6 | 15 | 193 | 10 | 192 | 1.12e-11 | 63.9 |
| MS.gene052246.t1 | MTR_7g063330 | 27.363 | 201 | 137 | 5 | 3 | 195 | 5 | 204 | 1.68e-11 | 63.5 |
| MS.gene052246.t1 | MTR_7g063390 | 31.496 | 127 | 86 | 1 | 66 | 191 | 75 | 201 | 1.93e-11 | 63.5 |
| MS.gene052246.t1 | MTR_7g076660 | 29.299 | 157 | 93 | 2 | 11 | 149 | 3 | 159 | 6.89e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052246.t1 | AT5G10050 | 64.338 | 272 | 97 | 0 | 11 | 282 | 5 | 276 | 9.48e-139 | 392 |
| MS.gene052246.t1 | AT5G65205 | 64.576 | 271 | 96 | 0 | 11 | 281 | 6 | 276 | 2.79e-136 | 386 |
| MS.gene052246.t1 | AT5G50600 | 32.447 | 188 | 117 | 5 | 15 | 195 | 49 | 233 | 9.25e-22 | 93.6 |
| MS.gene052246.t1 | AT5G50700 | 32.447 | 188 | 117 | 5 | 15 | 195 | 49 | 233 | 9.25e-22 | 93.6 |
| MS.gene052246.t1 | AT3G03330 | 27.239 | 268 | 161 | 6 | 15 | 270 | 45 | 290 | 1.80e-21 | 92.4 |
| MS.gene052246.t1 | AT3G47350 | 31.579 | 190 | 116 | 6 | 15 | 195 | 48 | 232 | 1.16e-19 | 87.4 |
| MS.gene052246.t1 | AT3G47350 | 31.579 | 190 | 116 | 6 | 15 | 195 | 48 | 232 | 3.24e-19 | 86.3 |
| MS.gene052246.t1 | AT3G47360 | 31.000 | 200 | 124 | 6 | 5 | 195 | 39 | 233 | 9.83e-19 | 84.7 |
| MS.gene052246.t1 | AT1G10310 | 32.039 | 206 | 127 | 6 | 16 | 211 | 20 | 222 | 1.59e-18 | 82.8 |
| MS.gene052246.t1 | AT2G17845 | 33.668 | 199 | 110 | 8 | 15 | 195 | 51 | 245 | 8.06e-18 | 82.0 |
| MS.gene052246.t1 | AT1G54870 | 32.843 | 204 | 116 | 6 | 5 | 191 | 73 | 272 | 1.81e-17 | 81.6 |
| MS.gene052246.t1 | AT1G54870 | 32.843 | 204 | 116 | 6 | 5 | 191 | 75 | 274 | 1.87e-17 | 81.6 |
| MS.gene052246.t1 | AT1G67730 | 30.208 | 192 | 118 | 5 | 17 | 195 | 55 | 243 | 3.12e-17 | 80.5 |
| MS.gene052246.t1 | AT3G05260 | 31.034 | 203 | 120 | 5 | 5 | 191 | 28 | 226 | 1.02e-16 | 79.0 |
| MS.gene052246.t1 | AT3G55310 | 32.124 | 193 | 118 | 6 | 15 | 195 | 21 | 212 | 1.54e-16 | 78.2 |
| MS.gene052246.t1 | AT1G52340 | 30.233 | 215 | 135 | 6 | 15 | 217 | 22 | 233 | 2.16e-16 | 77.8 |
| MS.gene052246.t1 | AT4G03140 | 28.070 | 228 | 149 | 7 | 15 | 235 | 82 | 301 | 2.30e-15 | 75.5 |
| MS.gene052246.t1 | AT3G55290 | 31.633 | 196 | 115 | 7 | 15 | 195 | 22 | 213 | 7.88e-15 | 73.2 |
| MS.gene052246.t1 | AT3G55290 | 31.633 | 196 | 115 | 7 | 15 | 195 | 21 | 212 | 8.51e-15 | 73.2 |
| MS.gene052246.t1 | AT1G24360 | 32.086 | 187 | 120 | 4 | 15 | 195 | 78 | 263 | 1.73e-14 | 72.8 |
| MS.gene052246.t1 | AT3G29260 | 31.633 | 196 | 125 | 5 | 6 | 195 | 2 | 194 | 6.22e-14 | 70.5 |
| MS.gene052246.t1 | AT5G50770 | 31.383 | 188 | 119 | 5 | 15 | 195 | 49 | 233 | 9.96e-14 | 70.9 |
| MS.gene052246.t1 | AT3G03350 | 40.476 | 84 | 50 | 0 | 110 | 193 | 183 | 266 | 4.13e-13 | 68.6 |
| MS.gene052246.t1 | AT3G03350 | 39.773 | 88 | 53 | 0 | 109 | 196 | 268 | 355 | 5.70e-13 | 68.9 |
| MS.gene052246.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 45 | 232 | 2.84e-12 | 66.2 |
| MS.gene052246.t1 | AT1G24470 | 27.500 | 200 | 125 | 6 | 17 | 202 | 56 | 249 | 2.96e-12 | 66.2 |
| MS.gene052246.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 43 | 230 | 2.99e-12 | 66.2 |
| MS.gene052246.t1 | AT2G47130 | 30.159 | 189 | 123 | 5 | 11 | 193 | 7 | 192 | 5.25e-12 | 65.1 |
| MS.gene052246.t1 | AT3G29250 | 30.366 | 191 | 124 | 5 | 11 | 195 | 7 | 194 | 5.79e-12 | 64.7 |
| MS.gene052246.t1 | AT4G20760 | 26.984 | 252 | 150 | 11 | 15 | 238 | 45 | 290 | 5.80e-12 | 65.1 |
| MS.gene052246.t1 | AT4G20760 | 26.984 | 252 | 150 | 11 | 15 | 238 | 65 | 310 | 6.80e-12 | 65.1 |
| MS.gene052246.t1 | AT3G26760 | 24.378 | 201 | 127 | 6 | 5 | 191 | 31 | 220 | 2.18e-11 | 63.5 |
Find 72 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAGAACTTGGACATTT+TGG | 0.143636 | 3.1:-70703260 | MS.gene052246:CDS |
| CGTTAGTATCAAACGTGTTT+TGG | 0.275941 | 3.1:+70704158 | None:intergenic |
| TGCGTTAGCCTCTGGACCTT+GGG | 0.276610 | 3.1:-70703556 | MS.gene052246:CDS |
| TGGAGCTGTGAAGTCAAATA+TGG | 0.307037 | 3.1:-70703213 | MS.gene052246:CDS |
| ACGTTCTACAATGGCGGATT+TGG | 0.318601 | 3.1:-70704347 | MS.gene052246:CDS |
| ACGTTTGATACTAACGTCTT+TGG | 0.327209 | 3.1:-70704151 | MS.gene052246:intron |
| CCACCTGCATGGTTCTCTTA+TGG | 0.348092 | 3.1:-70703029 | MS.gene052246:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3.1:-70703607 | MS.gene052246:CDS |
| CTCTGGCATGCGGTTGTAGA+TGG | 0.375038 | 3.1:+70703175 | None:intergenic |
| CTGCGTTAGCCTCTGGACCT+TGG | 0.392453 | 3.1:-70703557 | MS.gene052246:CDS |
| AAGTCAAATATGGGAAATTC+CGG | 0.392829 | 3.1:-70703203 | MS.gene052246:CDS |
| TAACGCTGGTGTTCCTTGTA+CGG | 0.415470 | 3.1:-70704212 | MS.gene052246:CDS |
| GGTTGCAGTGGAGGAGGTAT+TGG | 0.435778 | 3.1:-70704430 | MS.gene052246:CDS |
| ATTGCAGCTGTTGGCTGCGA+AGG | 0.447096 | 3.1:+70704390 | None:intergenic |
| ATATTTGACTTCACAGCTCC+AGG | 0.451839 | 3.1:+70703215 | None:intergenic |
| AGTGTTACTGCGTTAGCCTC+TGG | 0.452738 | 3.1:-70703564 | MS.gene052246:CDS |
| TGTTTAGCAAACTCGTCTGT+AGG | 0.453270 | 3.1:+70703080 | None:intergenic |
| CCATGTGAGGAACCACAGCC+TGG | 0.464735 | 3.1:+70703622 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+GGG | 0.465184 | 3.1:+70703081 | None:intergenic |
| AGTTCTTGAAGGAAGAATCT+AGG | 0.470292 | 3.1:+70704316 | None:intergenic |
| ACTGAACATCGAGTTCTTGA+AGG | 0.479210 | 3.1:+70704305 | None:intergenic |
| AGGTTCCATGAGAATGATCC+AGG | 0.481555 | 3.1:-70703640 | MS.gene052246:CDS |
| TGATCAAGAAGACTCAAAAC+TGG | 0.489269 | 3.1:-70704467 | MS.gene052246:CDS |
| AACTCTGCTCACGCTTTCAT+CGG | 0.498955 | 3.1:+70704282 | None:intergenic |
| CTCATCACAGGTTGCAGTGG+AGG | 0.505784 | 3.1:-70704439 | MS.gene052246:CDS |
| TGCAACCACATTGCAGCTGT+TGG | 0.505823 | 3.1:+70704381 | None:intergenic |
| CCAGGCTGTGGTTCCTCACA+TGG | 0.506294 | 3.1:-70703622 | MS.gene052246:CDS |
| AAACTGGTGGTTCTCATCAC+AGG | 0.512865 | 3.1:-70704451 | MS.gene052246:CDS |
| GAGACAGTAGAGCTCTCTCT+TGG | 0.513068 | 3.1:+70703120 | None:intergenic |
| GATGTTCTTGTTAATAACGC+TGG | 0.518173 | 3.1:-70704226 | MS.gene052246:CDS |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3.1:+70703184 | None:intergenic |
| CTTTCTTAGAATAGCAGCTA+CGG | 0.520499 | 3.1:+70703055 | None:intergenic |
| TGGTTCCTCACATGGCAACT+AGG | 0.522562 | 3.1:-70703614 | MS.gene052246:CDS |
| GATGTTGTGAGTGTTGTCCC+TGG | 0.523404 | 3.1:-70703233 | MS.gene052246:CDS |
| ATCACAGGTTGCAGTGGAGG+AGG | 0.526896 | 3.1:-70704436 | MS.gene052246:CDS |
| GCAATGTGGTTGCAACCAGC+AGG | 0.532348 | 3.1:-70704372 | MS.gene052246:CDS |
| GGAGCTGTGAAGTCAAATAT+GGG | 0.538147 | 3.1:-70703212 | MS.gene052246:CDS |
| ATGCTTTGACAGATACATTG+AGG | 0.541960 | 3.1:-70703500 | MS.gene052246:intron |
| AACGCTGGTGTTCCTTGTAC+GGG | 0.542007 | 3.1:-70704211 | MS.gene052246:CDS |
| TGGCAATTATTCTACTGTCA+TGG | 0.543525 | 3.1:-70703009 | MS.gene052246:CDS |
| CACAGCCTGGATCATTCTCA+TGG | 0.550562 | 3.1:+70703635 | None:intergenic |
| GTTCTCATCACAGGTTGCAG+TGG | 0.550811 | 3.1:-70704442 | MS.gene052246:CDS |
| TTGTACGGGCCCACTTGCTG+AGG | 0.553648 | 3.1:-70704197 | MS.gene052246:CDS |
| TCAGCAAGTGGGCCCGTACA+AGG | 0.556211 | 3.1:+70704199 | None:intergenic |
| TCAACATACAGATTAGAACT+TGG | 0.558737 | 3.1:-70703269 | MS.gene052246:intron |
| GATTTGAACAGTTTCCACTC+TGG | 0.560594 | 3.1:+70703158 | None:intergenic |
| AAGAGAGAGCTCTACTGTCT+CGG | 0.564188 | 3.1:-70703118 | MS.gene052246:CDS |
| GAGAGAGGAACCTCAGCAAG+TGG | 0.564453 | 3.1:+70704187 | None:intergenic |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3.1:+70703609 | None:intergenic |
| CATGAGAATGATCCAGGCTG+TGG | 0.572883 | 3.1:-70703634 | MS.gene052246:CDS |
| CATTGTAGAACGTGACCTGC+TGG | 0.575467 | 3.1:+70704357 | None:intergenic |
| TGAAAGCGTGAGCAGAGTTG+TGG | 0.579399 | 3.1:-70704278 | MS.gene052246:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3.1:-70703606 | MS.gene052246:CDS |
| TTTAGCAAACTCGTCTGTAG+GGG | 0.590181 | 3.1:+70703082 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3.1:-70703588 | MS.gene052246:CDS |
| TTAGCCTCTGGACCTTGGGG+CGG | 0.599080 | 3.1:-70703552 | MS.gene052246:CDS |
| TTGCCATAAGAGAACCATGC+AGG | 0.601420 | 3.1:+70703026 | None:intergenic |
| TAAGAAAGAAACCACCTGCA+TGG | 0.606131 | 3.1:-70703040 | MS.gene052246:CDS |
| TATTTGACTTCACAGCTCCA+GGG | 0.611695 | 3.1:+70703216 | None:intergenic |
| ACAGTTTCCACTCTGGCATG+CGG | 0.615919 | 3.1:+70703165 | None:intergenic |
| GCGTTAGCCTCTGGACCTTG+GGG | 0.617062 | 3.1:-70703555 | MS.gene052246:CDS |
| CAGCAGGTCACGTTCTACAA+TGG | 0.634429 | 3.1:-70704356 | MS.gene052246:CDS |
| GCACTATAAGTACCGCCCCA+AGG | 0.642162 | 3.1:+70703540 | None:intergenic |
| CGCAGCCAACAGCTGCAATG+TGG | 0.642199 | 3.1:-70704386 | MS.gene052246:CDS |
| CAGGTCACGTTCTACAATGG+CGG | 0.644489 | 3.1:-70704353 | MS.gene052246:CDS |
| AGAGAGGAACCTCAGCAAGT+GGG | 0.648959 | 3.1:+70704188 | None:intergenic |
| TCAAGAAGACTCAAAACTGG+TGG | 0.662392 | 3.1:-70704464 | MS.gene052246:CDS |
| AGTACCGCCCCAAGGTCCAG+AGG | 0.667983 | 3.1:+70703548 | None:intergenic |
| CCATAAGAGAACCATGCAGG+TGG | 0.674106 | 3.1:+70703029 | None:intergenic |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3.1:+70702969 | None:intergenic |
| TCTACAACCGCATGCCAGAG+TGG | 0.686871 | 3.1:-70703172 | MS.gene052246:CDS |
| AGAGAGCTCTACTGTCTCGG+AGG | 0.716254 | 3.1:-70703115 | MS.gene052246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTTTGATATG+CGG | - | chr3.1:70703979-70703998 | MS.gene052246:intron | 10.0% |
| !! | ATAATTCAAAGTAATAATGT+CGG | + | chr3.1:70703432-70703451 | None:intergenic | 15.0% |
| !! | ATTAAAATAAGTTTGAAGAT+AGG | + | chr3.1:70703969-70703988 | None:intergenic | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | - | chr3.1:70703674-70703693 | MS.gene052246:intron | 15.0% |
| !! | ACAACAATTATAAGCTATAA+AGG | + | chr3.1:70704140-70704159 | None:intergenic | 20.0% |
| !! | ATATTTATGTATGTTAGACT+TGG | + | chr3.1:70703592-70703611 | None:intergenic | 20.0% |
| !! | TTCTCAACAAACAAAAATAT+TGG | - | chr3.1:70703458-70703477 | MS.gene052246:intron | 20.0% |
| !!! | GATACTGTTTTGAATAAATT+TGG | - | chr3.1:70703178-70703197 | MS.gene052246:CDS | 20.0% |
| !!! | TAGAATTTTTATGTTAGACT+TGG | - | chr3.1:70703531-70703550 | MS.gene052246:CDS | 20.0% |
| !!! | TGTTAATAGGTTTTAGTTTT+TGG | - | chr3.1:70703687-70703706 | MS.gene052246:intron | 20.0% |
| ! | ATCAAATCAAATCAACAAGA+TGG | - | chr3.1:70704013-70704032 | MS.gene052246:intron | 25.0% |
| AAGTCAAATATGGGAAATTC+CGG | - | chr3.1:70704231-70704250 | MS.gene052246:CDS | 30.0% | |
| AATAATTATGTCTGTAAGGC+AGG | - | chr3.1:70703359-70703378 | MS.gene052246:intron | 30.0% | |
| ACTACTAACATAACTAGACA+GGG | + | chr3.1:70703617-70703636 | None:intergenic | 30.0% | |
| ATAAGCTATAAAGGTCAGAT+TGG | + | chr3.1:70704131-70704150 | None:intergenic | 30.0% | |
| TACTACTAACATAACTAGAC+AGG | + | chr3.1:70703618-70703637 | None:intergenic | 30.0% | |
| TCAACATACAGATTAGAACT+TGG | - | chr3.1:70704165-70704184 | MS.gene052246:CDS | 30.0% | |
| TGGGAATAATTATGTCTGTA+AGG | - | chr3.1:70703355-70703374 | MS.gene052246:intron | 30.0% | |
| ! | AGATTAGAACTTGGACATTT+TGG | - | chr3.1:70704174-70704193 | MS.gene052246:CDS | 30.0% |
| !!! | GGTTTTAGTTTTTGGTTTTG+TGG | - | chr3.1:70703695-70703714 | MS.gene052246:intron | 30.0% |
| ACGATTTCTATCGAAACAAG+CGG | + | chr3.1:70704052-70704071 | None:intergenic | 35.0% | |
| ACGTTTGATACTAACGTCTT+TGG | - | chr3.1:70703283-70703302 | MS.gene052246:intron | 35.0% | |
| AGTTCTTGAAGGAAGAATCT+AGG | + | chr3.1:70703121-70703140 | None:intergenic | 35.0% | |
| ATGCTTTGACAGATACATTG+AGG | - | chr3.1:70703934-70703953 | MS.gene052246:intron | 35.0% | |
| CTTTCTTAGAATAGCAGCTA+CGG | + | chr3.1:70704382-70704401 | None:intergenic | 35.0% | |
| GATGTTCTTGTTAATAACGC+TGG | - | chr3.1:70703208-70703227 | MS.gene052246:CDS | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | - | chr3.1:70703645-70703664 | MS.gene052246:intron | 35.0% | |
| GTCTATATTCGTGCTTCATA+GGG | - | chr3.1:70703503-70703522 | MS.gene052246:CDS | 35.0% | |
| GTTATGTTAGTAGTACAACC+AGG | - | chr3.1:70703623-70703642 | MS.gene052246:CDS | 35.0% | |
| TAGTACAACCAGGTACAATT+GGG | - | chr3.1:70703633-70703652 | MS.gene052246:CDS | 35.0% | |
| TGATCAAGAAGACTCAAAAC+TGG | - | chr3.1:70702967-70702986 | MS.gene052246:CDS | 35.0% | |
| TGGCAATTATTCTACTGTCA+TGG | - | chr3.1:70704425-70704444 | MS.gene052246:CDS | 35.0% | |
| TGTCTATATTCGTGCTTCAT+AGG | - | chr3.1:70703502-70703521 | MS.gene052246:CDS | 35.0% | |
| TTCGATAGAAATCGTTGCTT+TGG | - | chr3.1:70704057-70704076 | MS.gene052246:intron | 35.0% | |
| TTGATACTAACGTCTTTGGT+TGG | - | chr3.1:70703287-70703306 | MS.gene052246:intron | 35.0% | |
| ! | ATACGCCATTTAGAATCTAG+TGG | - | chr3.1:70704095-70704114 | MS.gene052246:intron | 35.0% |
| ! | CGTTAGTATCAAACGTGTTT+TGG | + | chr3.1:70703279-70703298 | None:intergenic | 35.0% |
| ACTGAACATCGAGTTCTTGA+AGG | + | chr3.1:70703132-70703151 | None:intergenic | 40.0% | |
| AGAAAGTCTCTAACACAGAG+AGG | + | chr3.1:70704468-70704487 | None:intergenic | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | - | chr3.1:70703846-70703865 | MS.gene052246:intron | 40.0% | |
| GATTTGAACAGTTTCCACTC+TGG | + | chr3.1:70704279-70704298 | None:intergenic | 40.0% | |
| GGAGCTGTGAAGTCAAATAT+GGG | - | chr3.1:70704222-70704241 | MS.gene052246:CDS | 40.0% | |
| GTAGTACAACCAGGTACAAT+TGG | - | chr3.1:70703632-70703651 | MS.gene052246:CDS | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+GGG | + | chr3.1:70704356-70704375 | None:intergenic | 40.0% | |
| TAAGAAAGAAACCACCTGCA+TGG | - | chr3.1:70704394-70704413 | MS.gene052246:CDS | 40.0% | |
| TCAAGAAGACTCAAAACTGG+TGG | - | chr3.1:70702970-70702989 | MS.gene052246:CDS | 40.0% | |
| TCCAGCCACTAGATTCTAAA+TGG | + | chr3.1:70704103-70704122 | None:intergenic | 40.0% | |
| TGGAGCTGTGAAGTCAAATA+TGG | - | chr3.1:70704221-70704240 | MS.gene052246:CDS | 40.0% | |
| TGTTTACACCCAATTGTACC+TGG | + | chr3.1:70703644-70703663 | None:intergenic | 40.0% | |
| TGTTTAGCAAACTCGTCTGT+AGG | + | chr3.1:70704357-70704376 | None:intergenic | 40.0% | |
| TTTAGCAAACTCGTCTGTAG+GGG | + | chr3.1:70704355-70704374 | None:intergenic | 40.0% | |
| ! | ATATTTGACTTCACAGCTCC+AGG | + | chr3.1:70704222-70704241 | None:intergenic | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | + | chr3.1:70704221-70704240 | None:intergenic | 40.0% |
| !! | TAATAATGTCGGTGTCGTGA+GGG | + | chr3.1:70703421-70703440 | None:intergenic | 40.0% |
| AAACTGGTGGTTCTCATCAC+AGG | - | chr3.1:70702983-70703002 | MS.gene052246:CDS | 45.0% | |
| AACTCTGCTCACGCTTTCAT+CGG | + | chr3.1:70703155-70703174 | None:intergenic | 45.0% | |
| AAGAGAGAGCTCTACTGTCT+CGG | - | chr3.1:70704316-70704335 | MS.gene052246:CDS | 45.0% | |
| AGGTTCCATGAGAATGATCC+AGG | - | chr3.1:70703794-70703813 | MS.gene052246:intron | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | - | chr3.1:70703828-70703847 | MS.gene052246:intron | 45.0% | |
| CTATCACTGCATACATGTGC+AGG | - | chr3.1:70703774-70703793 | MS.gene052246:intron | 45.0% | |
| TAACGCTGGTGTTCCTTGTA+CGG | - | chr3.1:70703222-70703241 | MS.gene052246:CDS | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | - | chr3.1:70703827-70703846 | MS.gene052246:intron | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | + | chr3.1:70703828-70703847 | None:intergenic | 45.0% | |
| TTGCCATAAGAGAACCATGC+AGG | + | chr3.1:70704411-70704430 | None:intergenic | 45.0% | |
| ! | GCCATTTAGAATCTAGTGGC+TGG | - | chr3.1:70704099-70704118 | MS.gene052246:intron | 45.0% |
| !! | ACGTTCTACAATGGCGGATT+TGG | - | chr3.1:70703087-70703106 | MS.gene052246:CDS | 45.0% |
| !! | GTAATAATGTCGGTGTCGTG+AGG | + | chr3.1:70703422-70703441 | None:intergenic | 45.0% |
| !! | GTGTTTTGGATTGCAGAGAG+AGG | + | chr3.1:70703265-70703284 | None:intergenic | 45.0% |
| !!! | ATAAAAATTGTTTTTTTAAT+TGG | - | chr3.1:70703335-70703354 | MS.gene052246:intron | 5.0% |
| !!! | TAAAAATTGTTTTTTTAATT+GGG | - | chr3.1:70703336-70703355 | MS.gene052246:intron | 5.0% |
| AACGCTGGTGTTCCTTGTAC+GGG | - | chr3.1:70703223-70703242 | MS.gene052246:CDS | 50.0% | |
| ACAGTTTCCACTCTGGCATG+CGG | + | chr3.1:70704272-70704291 | None:intergenic | 50.0% | |
| AGAGAGGAACCTCAGCAAGT+GGG | + | chr3.1:70703249-70703268 | None:intergenic | 50.0% | |
| CACAGCCTGGATCATTCTCA+TGG | + | chr3.1:70703802-70703821 | None:intergenic | 50.0% | |
| CAGCAGGTCACGTTCTACAA+TGG | - | chr3.1:70703078-70703097 | MS.gene052246:CDS | 50.0% | |
| CAGGTCACGTTCTACAATGG+CGG | - | chr3.1:70703081-70703100 | MS.gene052246:CDS | 50.0% | |
| CATGAGAATGATCCAGGCTG+TGG | - | chr3.1:70703800-70703819 | MS.gene052246:intron | 50.0% | |
| CATTGTAGAACGTGACCTGC+TGG | + | chr3.1:70703080-70703099 | None:intergenic | 50.0% | |
| CCACCTGCATGGTTCTCTTA+TGG | - | chr3.1:70704405-70704424 | MS.gene052246:CDS | 50.0% | |
| CCATAAGAGAACCATGCAGG+TGG | + | chr3.1:70704408-70704427 | None:intergenic | 50.0% | |
| GAGACAGTAGAGCTCTCTCT+TGG | + | chr3.1:70704317-70704336 | None:intergenic | 50.0% | |
| GTTCTCATCACAGGTTGCAG+TGG | - | chr3.1:70702992-70703011 | MS.gene052246:CDS | 50.0% | |
| TGCAACCACATTGCAGCTGT+TGG | + | chr3.1:70703056-70703075 | None:intergenic | 50.0% | |
| TGGTTCCTCACATGGCAACT+AGG | - | chr3.1:70703820-70703839 | MS.gene052246:intron | 50.0% | |
| ! | AGTGTTACTGCGTTAGCCTC+TGG | - | chr3.1:70703870-70703889 | MS.gene052246:intron | 50.0% |
| ! | GATGTTGTGAGTGTTGTCCC+TGG | - | chr3.1:70704201-70704220 | MS.gene052246:CDS | 50.0% |
| ! | TGAAAGCGTGAGCAGAGTTG+TGG | - | chr3.1:70703156-70703175 | MS.gene052246:CDS | 50.0% |
| ACTGACACGTCTCTGACACC+GGG | + | chr3.1:70703390-70703409 | None:intergenic | 55.0% | |
| AGAGAGCTCTACTGTCTCGG+AGG | - | chr3.1:70704319-70704338 | MS.gene052246:CDS | 55.0% | |
| ATCACAGGTTGCAGTGGAGG+AGG | - | chr3.1:70702998-70703017 | MS.gene052246:CDS | 55.0% | |
| CACTGACACGTCTCTGACAC+CGG | + | chr3.1:70703391-70703410 | None:intergenic | 55.0% | |
| CTCATCACAGGTTGCAGTGG+AGG | - | chr3.1:70702995-70703014 | MS.gene052246:CDS | 55.0% | |
| CTCTGGCATGCGGTTGTAGA+TGG | + | chr3.1:70704262-70704281 | None:intergenic | 55.0% | |
| GAGAGAGGAACCTCAGCAAG+TGG | + | chr3.1:70703250-70703269 | None:intergenic | 55.0% | |
| GCAATGTGGTTGCAACCAGC+AGG | - | chr3.1:70703062-70703081 | MS.gene052246:CDS | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | + | chr3.1:70704253-70704272 | None:intergenic | 55.0% | |
| TCTACAACCGCATGCCAGAG+TGG | - | chr3.1:70704262-70704281 | MS.gene052246:CDS | 55.0% | |
| ! | ATTGCAGCTGTTGGCTGCGA+AGG | + | chr3.1:70703047-70703066 | None:intergenic | 55.0% |
| ! | GCACTATAAGTACCGCCCCA+AGG | + | chr3.1:70703897-70703916 | None:intergenic | 55.0% |
| ! | GGTTGCAGTGGAGGAGGTAT+TGG | - | chr3.1:70703004-70703023 | MS.gene052246:CDS | 55.0% |
| ! | TGCGTTAGCCTCTGGACCTT+GGG | - | chr3.1:70703878-70703897 | MS.gene052246:intron | 55.0% |
| CCAGGCTGTGGTTCCTCACA+TGG | - | chr3.1:70703812-70703831 | MS.gene052246:intron | 60.0% | |
| CCATGTGAGGAACCACAGCC+TGG | + | chr3.1:70703815-70703834 | None:intergenic | 60.0% | |
| CGCAGCCAACAGCTGCAATG+TGG | - | chr3.1:70703048-70703067 | MS.gene052246:CDS | 60.0% | |
| TCAGCAAGTGGGCCCGTACA+AGG | + | chr3.1:70703238-70703257 | None:intergenic | 60.0% | |
| TCTGTAAGGCAGGCGTGTCC+CGG | - | chr3.1:70703369-70703388 | MS.gene052246:intron | 60.0% | |
| TTAGCCTCTGGACCTTGGGG+CGG | - | chr3.1:70703882-70703901 | MS.gene052246:intron | 60.0% | |
| ! | CTGCGTTAGCCTCTGGACCT+TGG | - | chr3.1:70703877-70703896 | MS.gene052246:intron | 60.0% |
| ! | GCGTTAGCCTCTGGACCTTG+GGG | - | chr3.1:70703879-70703898 | MS.gene052246:intron | 60.0% |
| ! | TTGTACGGGCCCACTTGCTG+AGG | - | chr3.1:70703237-70703256 | MS.gene052246:CDS | 60.0% |
| AGTACCGCCCCAAGGTCCAG+AGG | + | chr3.1:70703889-70703908 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70702947 | 70704509 | 70702947 | ID=MS.gene052246 |
| chr3.1 | mRNA | 70702947 | 70704509 | 70702947 | ID=MS.gene052246.t1;Parent=MS.gene052246 |
| chr3.1 | exon | 70704152 | 70704509 | 70704152 | ID=MS.gene052246.t1.exon1;Parent=MS.gene052246.t1 |
| chr3.1 | CDS | 70704152 | 70704509 | 70704152 | ID=cds.MS.gene052246.t1;Parent=MS.gene052246.t1 |
| chr3.1 | exon | 70703501 | 70703660 | 70703501 | ID=MS.gene052246.t1.exon2;Parent=MS.gene052246.t1 |
| chr3.1 | CDS | 70703501 | 70703660 | 70703501 | ID=cds.MS.gene052246.t1;Parent=MS.gene052246.t1 |
| chr3.1 | exon | 70702947 | 70703280 | 70702947 | ID=MS.gene052246.t1.exon3;Parent=MS.gene052246.t1 |
| chr3.1 | CDS | 70702947 | 70703280 | 70702947 | ID=cds.MS.gene052246.t1;Parent=MS.gene052246.t1 |
| Gene Sequence |
| Protein sequence |
