Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045079.t1 | XP_003602014.1 | 87 | 284 | 37 | 0 | 1 | 284 | 1 | 284 | 1.70E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045079.t1 | G4N286 | 31.5 | 270 | 178 | 5 | 17 | 283 | 10 | 275 | 1.7e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045079.t1 | G7J4E2 | 87.0 | 284 | 37 | 0 | 1 | 284 | 1 | 284 | 1.2e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045079 | MS.gene052246 | PPI |
| MS.gene045079 | MS.gene052244 | PPI |
| MS.gene015282 | MS.gene045079 | PPI |
| MS.gene045079 | MS.gene013839 | PPI |
| MS.gene013840 | MS.gene045079 | PPI |
| MS.gene09624 | MS.gene045079 | PPI |
| MS.gene045079 | MS.gene43514 | PPI |
| MS.gene013841 | MS.gene045079 | PPI |
| MS.gene052244 | MS.gene045079 | PPI |
| MS.gene013838 | MS.gene045079 | PPI |
| MS.gene75444 | MS.gene045079 | PPI |
| MS.gene045079 | MS.gene75445 | PPI |
| MS.gene045080 | MS.gene045079 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045079.t1 | MTR_3g087850 | 89.046 | 283 | 31 | 0 | 1 | 283 | 16 | 298 | 0.0 | 527 |
| MS.gene045079.t1 | MTR_3g087860 | 91.549 | 284 | 24 | 0 | 1 | 284 | 1 | 284 | 0.0 | 519 |
| MS.gene045079.t1 | MTR_4g097510 | 47.015 | 268 | 139 | 2 | 13 | 278 | 4 | 270 | 3.42e-85 | 256 |
| MS.gene045079.t1 | MTR_3g085740 | 33.505 | 194 | 122 | 3 | 8 | 195 | 72 | 264 | 2.35e-23 | 97.4 |
| MS.gene045079.t1 | MTR_4g058840 | 36.041 | 197 | 111 | 7 | 15 | 198 | 15 | 209 | 9.77e-23 | 95.1 |
| MS.gene045079.t1 | MTR_4g058820 | 36.041 | 197 | 111 | 7 | 15 | 198 | 15 | 209 | 9.77e-23 | 95.1 |
| MS.gene045079.t1 | MTR_4g058810 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 2.06e-21 | 91.3 |
| MS.gene045079.t1 | MTR_8g096580 | 33.679 | 193 | 117 | 6 | 12 | 196 | 46 | 235 | 2.54e-19 | 86.7 |
| MS.gene045079.t1 | MTR_1g051165 | 31.863 | 204 | 121 | 6 | 9 | 195 | 12 | 214 | 9.38e-19 | 84.3 |
| MS.gene045079.t1 | MTR_8g096620 | 29.502 | 261 | 161 | 10 | 15 | 263 | 49 | 298 | 3.64e-18 | 83.6 |
| MS.gene045079.t1 | MTR_7g080410 | 28.881 | 277 | 154 | 11 | 2 | 267 | 31 | 275 | 6.56e-17 | 79.7 |
| MS.gene045079.t1 | MTR_4g052300 | 31.667 | 180 | 115 | 4 | 15 | 188 | 12 | 189 | 1.34e-16 | 78.2 |
| MS.gene045079.t1 | MTR_4g052350 | 32.086 | 187 | 105 | 5 | 15 | 188 | 18 | 195 | 1.35e-16 | 78.2 |
| MS.gene045079.t1 | MTR_4g052320 | 30.890 | 191 | 123 | 5 | 4 | 188 | 2 | 189 | 1.75e-16 | 77.8 |
| MS.gene045079.t1 | MTR_7g080410 | 32.653 | 196 | 118 | 7 | 15 | 199 | 42 | 234 | 1.86e-16 | 78.2 |
| MS.gene045079.t1 | MTR_3g086210 | 30.808 | 198 | 113 | 7 | 17 | 197 | 57 | 247 | 1.30e-15 | 75.9 |
| MS.gene045079.t1 | MTR_7g105590 | 30.769 | 182 | 120 | 4 | 15 | 191 | 12 | 192 | 2.09e-15 | 73.2 |
| MS.gene045079.t1 | MTR_4g052340 | 29.444 | 180 | 119 | 4 | 15 | 188 | 18 | 195 | 2.58e-15 | 74.3 |
| MS.gene045079.t1 | MTR_1563s0010 | 35.294 | 187 | 107 | 5 | 16 | 190 | 114 | 298 | 7.62e-15 | 74.3 |
| MS.gene045079.t1 | MTR_7g113650 | 30.198 | 202 | 116 | 7 | 11 | 191 | 33 | 230 | 8.95e-14 | 70.5 |
| MS.gene045079.t1 | MTR_7g110140 | 30.151 | 199 | 130 | 6 | 15 | 208 | 10 | 204 | 9.35e-14 | 70.1 |
| MS.gene045079.t1 | MTR_4g134660 | 32.275 | 189 | 117 | 6 | 16 | 195 | 11 | 197 | 1.17e-13 | 69.3 |
| MS.gene045079.t1 | MTR_2g022600 | 32.967 | 182 | 108 | 4 | 16 | 188 | 38 | 214 | 1.42e-13 | 70.5 |
| MS.gene045079.t1 | MTR_4g066050 | 29.798 | 198 | 126 | 6 | 9 | 195 | 22 | 217 | 8.98e-13 | 67.0 |
| MS.gene045079.t1 | MTR_3g113870 | 26.230 | 183 | 127 | 3 | 17 | 193 | 26 | 206 | 1.22e-12 | 66.2 |
| MS.gene045079.t1 | MTR_6g035395 | 31.148 | 183 | 111 | 5 | 9 | 188 | 3 | 173 | 1.81e-12 | 66.2 |
| MS.gene045079.t1 | MTR_7g071680 | 29.947 | 187 | 124 | 3 | 15 | 195 | 33 | 218 | 3.76e-12 | 65.9 |
| MS.gene045079.t1 | MTR_7g107670 | 27.184 | 206 | 140 | 5 | 15 | 213 | 37 | 239 | 4.14e-12 | 65.5 |
| MS.gene045079.t1 | MTR_7g076660 | 32.450 | 151 | 83 | 3 | 17 | 149 | 10 | 159 | 9.06e-12 | 64.7 |
| MS.gene045079.t1 | MTR_7g076660 | 32.450 | 151 | 83 | 3 | 17 | 149 | 11 | 160 | 9.13e-12 | 64.7 |
| MS.gene045079.t1 | MTR_6g023590 | 27.604 | 192 | 125 | 6 | 12 | 193 | 14 | 201 | 3.84e-11 | 62.4 |
| MS.gene045079.t1 | MTR_7g063390 | 30.709 | 127 | 87 | 1 | 66 | 191 | 75 | 201 | 6.23e-11 | 62.0 |
| MS.gene045079.t1 | MTR_7g063360 | 33.028 | 109 | 73 | 0 | 85 | 193 | 95 | 203 | 9.84e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045079.t1 | AT5G10050 | 66.544 | 272 | 91 | 0 | 11 | 282 | 5 | 276 | 2.47e-141 | 399 |
| MS.gene045079.t1 | AT5G65205 | 65.314 | 271 | 94 | 0 | 11 | 281 | 6 | 276 | 1.32e-139 | 395 |
| MS.gene045079.t1 | AT3G03330 | 27.985 | 268 | 159 | 6 | 15 | 270 | 45 | 290 | 6.28e-22 | 94.0 |
| MS.gene045079.t1 | AT5G50600 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 2.07e-21 | 92.8 |
| MS.gene045079.t1 | AT5G50700 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 2.07e-21 | 92.8 |
| MS.gene045079.t1 | AT1G10310 | 32.843 | 204 | 124 | 6 | 16 | 209 | 20 | 220 | 6.77e-19 | 84.0 |
| MS.gene045079.t1 | AT2G17845 | 33.831 | 201 | 117 | 7 | 10 | 195 | 46 | 245 | 7.25e-19 | 85.1 |
| MS.gene045079.t1 | AT3G55310 | 33.333 | 198 | 119 | 6 | 10 | 195 | 16 | 212 | 2.60e-18 | 83.2 |
| MS.gene045079.t1 | AT1G24360 | 32.990 | 194 | 123 | 4 | 8 | 195 | 71 | 263 | 7.12e-18 | 82.4 |
| MS.gene045079.t1 | AT1G62610 | 31.658 | 199 | 122 | 6 | 10 | 195 | 14 | 211 | 8.67e-18 | 81.6 |
| MS.gene045079.t1 | AT1G62610 | 31.658 | 199 | 122 | 6 | 10 | 195 | 12 | 209 | 9.99e-18 | 81.3 |
| MS.gene045079.t1 | AT1G62610 | 31.658 | 199 | 122 | 6 | 10 | 195 | 18 | 215 | 1.00e-17 | 81.6 |
| MS.gene045079.t1 | AT1G62610 | 31.658 | 199 | 122 | 6 | 10 | 195 | 13 | 210 | 1.05e-17 | 81.3 |
| MS.gene045079.t1 | AT1G63380 | 30.653 | 199 | 124 | 6 | 10 | 195 | 14 | 211 | 1.81e-17 | 80.9 |
| MS.gene045079.t1 | AT1G63380 | 30.653 | 199 | 124 | 6 | 10 | 195 | 21 | 218 | 2.06e-17 | 80.9 |
| MS.gene045079.t1 | AT1G63380 | 30.653 | 199 | 124 | 6 | 10 | 195 | 16 | 213 | 2.13e-17 | 80.5 |
| MS.gene045079.t1 | AT1G63380 | 30.653 | 199 | 124 | 6 | 10 | 195 | 18 | 215 | 2.49e-17 | 80.5 |
| MS.gene045079.t1 | AT3G55290 | 32.323 | 198 | 121 | 6 | 10 | 195 | 16 | 212 | 2.96e-17 | 80.1 |
| MS.gene045079.t1 | AT3G55290 | 32.323 | 198 | 121 | 6 | 10 | 195 | 17 | 213 | 3.21e-17 | 80.1 |
| MS.gene045079.t1 | AT3G47360 | 29.000 | 200 | 128 | 6 | 5 | 195 | 39 | 233 | 1.01e-16 | 79.0 |
| MS.gene045079.t1 | AT5G50690 | 30.332 | 211 | 135 | 7 | 15 | 218 | 49 | 254 | 2.43e-16 | 77.8 |
| MS.gene045079.t1 | AT5G50590 | 30.332 | 211 | 135 | 7 | 15 | 218 | 49 | 254 | 2.43e-16 | 77.8 |
| MS.gene045079.t1 | AT5G50690 | 31.937 | 191 | 118 | 7 | 15 | 198 | 49 | 234 | 7.61e-16 | 75.9 |
| MS.gene045079.t1 | AT5G50590 | 31.937 | 191 | 118 | 7 | 15 | 198 | 49 | 234 | 7.61e-16 | 75.9 |
| MS.gene045079.t1 | AT1G52340 | 31.019 | 216 | 134 | 6 | 15 | 218 | 22 | 234 | 1.41e-15 | 75.5 |
| MS.gene045079.t1 | AT1G54870 | 31.863 | 204 | 118 | 6 | 5 | 191 | 75 | 274 | 3.16e-15 | 75.1 |
| MS.gene045079.t1 | AT1G54870 | 31.863 | 204 | 118 | 6 | 5 | 191 | 73 | 272 | 3.21e-15 | 75.1 |
| MS.gene045079.t1 | AT3G46170 | 30.808 | 198 | 124 | 7 | 10 | 195 | 25 | 221 | 7.53e-15 | 73.6 |
| MS.gene045079.t1 | AT1G67730 | 29.353 | 201 | 108 | 6 | 17 | 195 | 55 | 243 | 1.66e-14 | 72.8 |
| MS.gene045079.t1 | AT3G47350 | 27.895 | 190 | 123 | 6 | 15 | 195 | 48 | 232 | 1.85e-14 | 72.8 |
| MS.gene045079.t1 | AT3G05260 | 30.526 | 190 | 115 | 4 | 15 | 191 | 41 | 226 | 2.31e-14 | 72.0 |
| MS.gene045079.t1 | AT3G03350 | 41.176 | 85 | 50 | 0 | 109 | 193 | 182 | 266 | 2.77e-14 | 72.0 |
| MS.gene045079.t1 | AT5G50770 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 3.38e-14 | 72.0 |
| MS.gene045079.t1 | AT3G03350 | 41.176 | 85 | 50 | 0 | 109 | 193 | 268 | 352 | 3.67e-14 | 72.4 |
| MS.gene045079.t1 | AT3G47350 | 27.895 | 190 | 123 | 6 | 15 | 195 | 48 | 232 | 4.10e-14 | 71.6 |
| MS.gene045079.t1 | AT2G47130 | 30.612 | 196 | 127 | 5 | 6 | 195 | 2 | 194 | 3.46e-13 | 68.2 |
| MS.gene045079.t1 | AT3G26770 | 25.604 | 207 | 139 | 6 | 15 | 211 | 45 | 246 | 1.04e-12 | 67.4 |
| MS.gene045079.t1 | AT4G03140 | 28.495 | 186 | 124 | 4 | 15 | 194 | 82 | 264 | 1.16e-12 | 67.8 |
| MS.gene045079.t1 | AT3G51680 | 31.100 | 209 | 129 | 5 | 1 | 195 | 20 | 227 | 1.51e-12 | 67.0 |
| MS.gene045079.t1 | AT3G29250 | 29.648 | 199 | 131 | 5 | 3 | 195 | 35 | 230 | 2.51e-12 | 66.2 |
| MS.gene045079.t1 | AT3G29260 | 30.348 | 201 | 126 | 6 | 11 | 205 | 7 | 199 | 3.35e-12 | 65.5 |
| MS.gene045079.t1 | AT3G29250 | 29.592 | 196 | 129 | 5 | 6 | 195 | 2 | 194 | 7.45e-12 | 64.7 |
| MS.gene045079.t1 | AT3G29250 | 29.843 | 191 | 125 | 5 | 11 | 195 | 45 | 232 | 9.71e-12 | 64.7 |
| MS.gene045079.t1 | AT4G20760 | 26.667 | 225 | 133 | 10 | 15 | 212 | 65 | 284 | 1.69e-11 | 63.9 |
| MS.gene045079.t1 | AT4G20760 | 26.667 | 225 | 133 | 10 | 15 | 212 | 45 | 264 | 1.78e-11 | 63.9 |
| MS.gene045079.t1 | AT5G51030 | 33.784 | 148 | 88 | 6 | 12 | 152 | 36 | 180 | 3.66e-11 | 63.2 |
| MS.gene045079.t1 | AT3G06060 | 29.944 | 177 | 118 | 3 | 17 | 188 | 43 | 218 | 4.93e-11 | 62.8 |
| MS.gene045079.t1 | AT3G06060 | 29.944 | 177 | 118 | 3 | 17 | 188 | 60 | 235 | 5.36e-11 | 62.8 |
Find 73 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTGGAACTTGGAAATTT+TGG | 0.076726 | 3.4:-81418115 | MS.gene045079:CDS |
| AGTTCTTGAAGAAAGAATTT+AGG | 0.187004 | 3.4:+81420804 | None:intergenic |
| ACGTTTGATACTAACGTATT+TGG | 0.203077 | 3.4:-81420639 | MS.gene045079:intron |
| AATAATGTTCTAGATAAATT+TGG | 0.248184 | 3.4:-81420744 | MS.gene045079:CDS |
| CGTTAGTATCAAACGTGTTT+TGG | 0.252956 | 3.4:+81420646 | None:intergenic |
| ATGCTTTGACAGATACATTA+AGG | 0.281542 | 3.4:-81419870 | MS.gene045079:intron |
| GTTCTTGAAGAAAGAATTTA+GGG | 0.282188 | 3.4:+81420805 | None:intergenic |
| ACGTTCAACCATGGCGGATT+TGG | 0.307727 | 3.4:-81420835 | MS.gene045079:CDS |
| AAGTCAAATATTGGAAATTC+CGG | 0.338697 | 3.4:-81418058 | MS.gene045079:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3.4:-81419977 | MS.gene045079:CDS |
| AGTGTTGCTGGGTTGGCATC+TGG | 0.375364 | 3.4:-81419934 | MS.gene045079:CDS |
| CTCTAACACAGAGAGGTAAA+TGG | 0.378798 | 3.4:+81417831 | None:intergenic |
| CTCCGGCATGCGGTTGTAGA+TGG | 0.385536 | 3.4:+81418030 | None:intergenic |
| TCTCGGATTGCCGCTTCAAA+TGG | 0.399494 | 3.4:+81417992 | None:intergenic |
| GGAGCTGTGAAGTCAAATAT+TGG | 0.400907 | 3.4:-81418067 | MS.gene045079:CDS |
| GTTAACGTTGGAAGTGTTGC+TGG | 0.406103 | 3.4:-81419946 | MS.gene045079:CDS |
| CTGGGTTGGCATCTGGACCT+TGG | 0.422583 | 3.4:-81419927 | MS.gene045079:CDS |
| CAGCCATGACAGTAGAATAA+TGG | 0.425148 | 3.4:+81417861 | None:intergenic |
| GGTTGCAGCGGAGGAGGTAT+AGG | 0.425422 | 3.4:-81420918 | MS.gene045079:CDS |
| ATATTTGACTTCACAGCTCC+AGG | 0.429584 | 3.4:+81418070 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+AGG | 0.431511 | 3.4:+81417936 | None:intergenic |
| GCACCGTAGCTGCTGTCCTT+AGG | 0.465314 | 3.4:-81417913 | MS.gene045079:CDS |
| AACTCTGTTCACGCTTTCAT+CGG | 0.468082 | 3.4:+81420770 | None:intergenic |
| CGTTGGAAGTGTTGCTGGGT+TGG | 0.478666 | 3.4:-81419941 | MS.gene045079:CDS |
| TCAACAAACAGATTGGAACT+TGG | 0.486654 | 3.4:-81418124 | MS.gene045079:intron |
| ATGCAGGTGGTTTCTTCCTA+AGG | 0.489801 | 3.4:+81417897 | None:intergenic |
| AAACCAGTGGTTCTCATCAC+AGG | 0.491991 | 3.4:-81420939 | MS.gene045079:CDS |
| TTGGCATCTGGACCTTGGAA+TGG | 0.498857 | 3.4:-81419922 | MS.gene045079:CDS |
| ATCACAGGTTGCAGCGGAGG+AGG | 0.503558 | 3.4:-81420924 | MS.gene045079:CDS |
| AGGAACCATGAGAATGGTCC+AGG | 0.505024 | 3.4:-81420010 | MS.gene045079:CDS |
| TTTGCAGCTGTTAGCTGCGA+AGG | 0.507590 | 3.4:+81420878 | None:intergenic |
| TAGTTCCTCACATGGCAACT+AGG | 0.516282 | 3.4:-81419984 | MS.gene045079:CDS |
| GCAAAGTGGTTGCAACCAGC+AGG | 0.517343 | 3.4:-81420860 | MS.gene045079:CDS |
| CTTCCTAAGGACAGCAGCTA+CGG | 0.519587 | 3.4:+81417910 | None:intergenic |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3.4:+81418039 | None:intergenic |
| CTCATCACAGGTTGCAGCGG+AGG | 0.528829 | 3.4:-81420927 | MS.gene045079:CDS |
| CCATGTGAGGAACTACAGCC+TGG | 0.541278 | 3.4:+81419992 | None:intergenic |
| AACGCTGGTGTTCTTTGTGT+GGG | 0.556188 | 3.4:-81420699 | MS.gene045079:CDS |
| CATGGTTGAACGTGACCTGC+TGG | 0.557065 | 3.4:+81420845 | None:intergenic |
| TAACGCTGGTGTTCTTTGTG+TGG | 0.562477 | 3.4:-81420700 | MS.gene045079:CDS |
| CAACCTGTGATGAGAACCAC+TGG | 0.563963 | 3.4:+81420936 | None:intergenic |
| TTTAGCAAACTCGTCTGTAA+GGG | 0.566814 | 3.4:+81417937 | None:intergenic |
| TGGCCATTATTCTACTGTCA+TGG | 0.567137 | 3.4:-81417864 | MS.gene045079:CDS |
| CCACCTGCATGGTTCTCGTA+TGG | 0.567655 | 3.4:-81417884 | MS.gene045079:CDS |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3.4:+81419979 | None:intergenic |
| GAGAGCGGAACTTCAGCAAG+TGG | 0.579771 | 3.4:+81420675 | None:intergenic |
| TGGCCATACGAGAACCATGC+AGG | 0.580164 | 3.4:+81417881 | None:intergenic |
| CCAGGCTGTAGTTCCTCACA+TGG | 0.580243 | 3.4:-81419992 | MS.gene045079:CDS |
| GAGAAAATAGAGCTCTCTCT+CGG | 0.580696 | 3.4:+81417975 | None:intergenic |
| CGCAGCTAACAGCTGCAAAG+TGG | 0.582001 | 3.4:-81420874 | MS.gene045079:CDS |
| TTAACGTTGGAAGTGTTGCT+GGG | 0.587244 | 3.4:-81419945 | MS.gene045079:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3.4:-81419976 | MS.gene045079:CDS |
| GATGTTGTGAATGTTCTCCC+TGG | 0.591417 | 3.4:-81418088 | MS.gene045079:CDS |
| ATGTGCAGGAACCATGAGAA+TGG | 0.591626 | 3.4:-81420016 | MS.gene045079:intron |
| GCACTGTAAGCACCATTCCA+AGG | 0.593829 | 3.4:+81419910 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3.4:-81419958 | MS.gene045079:CDS |
| TATTTGACTTCACAGCTCCA+GGG | 0.603014 | 3.4:+81418071 | None:intergenic |
| GATGTTCTTGTAAATAACGC+TGG | 0.609735 | 3.4:-81420714 | MS.gene045079:CDS |
| TACAGCCTGGACCATTCTCA+TGG | 0.615109 | 3.4:+81420005 | None:intergenic |
| ACTATTCAAACCATTTGAAG+CGG | 0.616573 | 3.4:-81418002 | MS.gene045079:CDS |
| AGCCATCTACAACCGCATGC+CGG | 0.618672 | 3.4:-81418032 | MS.gene045079:CDS |
| GGTTTGAATAGTTTCCACTC+CGG | 0.618933 | 3.4:+81418013 | None:intergenic |
| ATAGTTTCCACTCCGGCATG+CGG | 0.621048 | 3.4:+81418020 | None:intergenic |
| TTAGGAAGAAACCACCTGCA+TGG | 0.623601 | 3.4:-81417895 | MS.gene045079:CDS |
| TCAAGAAGATTCAAAACCAG+TGG | 0.624130 | 3.4:-81420952 | MS.gene045079:CDS |
| GTCTTGATCCAAATCCGCCA+TGG | 0.629951 | 3.4:+81420827 | None:intergenic |
| GTTCTCATCACAGGTTGCAG+CGG | 0.636969 | 3.4:-81420930 | MS.gene045079:CDS |
| AGAGCGGAACTTCAGCAAGT+GGG | 0.638323 | 3.4:+81420676 | None:intergenic |
| TCTACAACCGCATGCCGGAG+TGG | 0.644601 | 3.4:-81418027 | MS.gene045079:CDS |
| CAGCAGGTCACGTTCAACCA+TGG | 0.654260 | 3.4:-81420844 | MS.gene045079:CDS |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3.4:+81417824 | None:intergenic |
| CAGGTCACGTTCAACCATGG+CGG | 0.709328 | 3.4:-81420841 | MS.gene045079:CDS |
| CCATACGAGAACCATGCAGG+TGG | 0.716141 | 3.4:+81417884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAAATTTAAT+CGG | - | chr3.4:81418467-81418486 | MS.gene045079:intron | 10.0% |
| !! | AAGTTAATTGAGTTTATTAA+CGG | - | chr3.4:81419982-81420001 | MS.gene045079:CDS | 15.0% |
| !! | ACTATATTCATATTCATATT+AGG | - | chr3.4:81420485-81420504 | MS.gene045079:intron | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | - | chr3.4:81418695-81418714 | MS.gene045079:intron | 15.0% |
| !!! | AATAATGTTCTAGATAAATT+TGG | - | chr3.4:81418030-81418049 | MS.gene045079:CDS | 15.0% |
| !!! | TTTCAAACTTGTTTTAATTT+TGG | - | chr3.4:81418935-81418954 | MS.gene045079:intron | 15.0% |
| !! | AAGAACCAAAAAATACATTT+CGG | + | chr3.4:81419286-81419305 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAAAAGTCAATT+TGG | + | chr3.4:81420608-81420627 | None:intergenic | 20.0% |
| !! | ATGAAGAAGATAAAAGAAAA+GGG | - | chr3.4:81419599-81419618 | MS.gene045079:intron | 20.0% |
| !! | GCAACTACAAAATTAAATAA+TGG | + | chr3.4:81420582-81420601 | None:intergenic | 20.0% |
| !! | TATGAAGAAGATAAAAGAAA+AGG | - | chr3.4:81419598-81419617 | MS.gene045079:intron | 20.0% |
| !! | TCATGCAATTACATTAAAAA+AGG | + | chr3.4:81419335-81419354 | None:intergenic | 20.0% |
| !!! | ATTGAAGTTTCTTTTGTTTT+GGG | + | chr3.4:81418591-81418610 | None:intergenic | 20.0% |
| !!! | TTAATTCTAGTTTTGTTTGT+TGG | - | chr3.4:81418249-81418268 | MS.gene045079:intron | 20.0% |
| !!! | TTTTCTTTTATCTTCTTCAT+AGG | + | chr3.4:81419599-81419618 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGCAGTATACTT+TGG | + | chr3.4:81419761-81419780 | None:intergenic | 20.0% |
| ! | AAGTCAAATATTGGAAATTC+CGG | - | chr3.4:81420716-81420735 | MS.gene045079:CDS | 25.0% |
| ! | AATTGAGTTTATTAACGGTT+CGG | - | chr3.4:81419987-81420006 | MS.gene045079:CDS | 25.0% |
| ! | AGATTTCTATAACTTCCATA+TGG | + | chr3.4:81418990-81419009 | None:intergenic | 25.0% |
| ! | AGTTCTTGAAGAAAGAATTT+AGG | + | chr3.4:81417973-81417992 | None:intergenic | 25.0% |
| ! | ATAGATTTCTACCTATTGAT+TGG | - | chr3.4:81419518-81419537 | MS.gene045079:intron | 25.0% |
| ! | ATCAAATTAACACATTGATC+CGG | + | chr3.4:81420214-81420233 | None:intergenic | 25.0% |
| ! | GTTAACCGTTATCAAAATAA+TGG | - | chr3.4:81420018-81420037 | MS.gene045079:intron | 25.0% |
| ! | GTTCTTGAAGAAAGAATTTA+GGG | + | chr3.4:81417972-81417991 | None:intergenic | 25.0% |
| ! | TACTAATACCAAGTACAATT+GGG | - | chr3.4:81418654-81418673 | MS.gene045079:intron | 25.0% |
| ! | TATTAGGTATTACAGTACTA+AGG | - | chr3.4:81420501-81420520 | MS.gene045079:intron | 25.0% |
| ! | TGAAATGAAATAGTTCATGA+TGG | - | chr3.4:81420318-81420337 | MS.gene045079:intron | 25.0% |
| ! | TGGAGTTCTTAATCTATATT+GGG | - | chr3.4:81419416-81419435 | MS.gene045079:intron | 25.0% |
| ! | TGTATTCAGTTCATTTATGT+TGG | - | chr3.4:81418560-81418579 | MS.gene045079:intron | 25.0% |
| ! | TTACTAATACCAAGTACAAT+TGG | - | chr3.4:81418653-81418672 | MS.gene045079:intron | 25.0% |
| ! | TTGGAGTTCTTAATCTATAT+TGG | - | chr3.4:81419415-81419434 | MS.gene045079:intron | 25.0% |
| ! | TTTGAATCAAATGAACCATA+TGG | - | chr3.4:81418972-81418991 | MS.gene045079:intron | 25.0% |
| !! | TACCTGTTTTCATGTTTAAT+TGG | - | chr3.4:81419473-81419492 | MS.gene045079:intron | 25.0% |
| !! | TCGGTTCAAAATATTGTTTT+TGG | + | chr3.4:81419267-81419286 | None:intergenic | 25.0% |
| !! | TTGGCTAAAAAAGAAGTATA+TGG | - | chr3.4:81419537-81419556 | MS.gene045079:intron | 25.0% |
| !!! | CATTGAAGTTTCTTTTGTTT+TGG | + | chr3.4:81418592-81418611 | None:intergenic | 25.0% |
| !!! | GTTATTTTCAACAAACAGAT+TGG | - | chr3.4:81420643-81420662 | MS.gene045079:CDS | 25.0% |
| !!! | TTCTTTTGAAGAATGAGAAT+GGG | - | chr3.4:81418330-81418349 | MS.gene045079:intron | 25.0% |
| !!! | TTCTTTTTTAGCCAATCAAT+AGG | + | chr3.4:81419532-81419551 | None:intergenic | 25.0% |
| !!! | TTGAACCGAAATGTATTTTT+TGG | - | chr3.4:81419278-81419297 | MS.gene045079:intron | 25.0% |
| AACTTAAACCAGTGATTTCT+AGG | + | chr3.4:81420121-81420140 | None:intergenic | 30.0% | |
| ACCGAATTGTTGAAATAGTT+TGG | - | chr3.4:81419150-81419169 | MS.gene045079:intron | 30.0% | |
| ACGTTTGATACTAACGTATT+TGG | - | chr3.4:81418135-81418154 | MS.gene045079:intron | 30.0% | |
| ACTATTCAAACCATTTGAAG+CGG | - | chr3.4:81420772-81420791 | MS.gene045079:CDS | 30.0% | |
| ACTATTTCAACAATTCGGTT+CGG | + | chr3.4:81419149-81419168 | None:intergenic | 30.0% | |
| ACTTAAACCAGTGATTTCTA+GGG | + | chr3.4:81420120-81420139 | None:intergenic | 30.0% | |
| ATCTATATTGGGCACAATAT+AGG | - | chr3.4:81419427-81419446 | MS.gene045079:intron | 30.0% | |
| ATGCTTTGACAGATACATTA+AGG | - | chr3.4:81418904-81418923 | MS.gene045079:intron | 30.0% | |
| CAACAACATGTAAGACATAA+AGG | + | chr3.4:81420624-81420643 | None:intergenic | 30.0% | |
| CCCAAACTATTTCAACAATT+CGG | + | chr3.4:81419154-81419173 | None:intergenic | 30.0% | |
| CCGAATTGTTGAAATAGTTT+GGG | - | chr3.4:81419151-81419170 | MS.gene045079:intron | 30.0% | |
| GTCCAATTAAACATGAAAAC+AGG | + | chr3.4:81419478-81419497 | None:intergenic | 30.0% | |
| GTTGTTTACAAATGTTGTGA+TGG | - | chr3.4:81419380-81419399 | MS.gene045079:intron | 30.0% | |
| TCAGTTCATTTATGTTGGTA+TGG | - | chr3.4:81418565-81418584 | MS.gene045079:intron | 30.0% | |
| TCAGTTCGTAGGTAATAAAA+TGG | + | chr3.4:81419243-81419262 | None:intergenic | 30.0% | |
| TTGATACTAACGTATTTGGT+TGG | - | chr3.4:81418139-81418158 | MS.gene045079:intron | 30.0% | |
| ! | AAATGTTGTGATGGAATTTG+AGG | - | chr3.4:81419389-81419408 | MS.gene045079:intron | 30.0% |
| ! | AGATTGGAACTTGGAAATTT+TGG | - | chr3.4:81420659-81420678 | MS.gene045079:CDS | 30.0% |
| ! | TTGATGAAAGTGTAATCTAG+CGG | - | chr3.4:81420229-81420248 | MS.gene045079:intron | 30.0% |
| ! | TTTGTTTGTTGGATTGATGT+TGG | - | chr3.4:81418260-81418279 | MS.gene045079:intron | 30.0% |
| !! | ACTTTTTCTCTTTCAGACTT+GGG | - | chr3.4:81419684-81419703 | MS.gene045079:intron | 30.0% |
| !! | CCGTTATCAAAATAATGGAT+CGG | - | chr3.4:81420023-81420042 | MS.gene045079:intron | 30.0% |
| !! | GTTCTTTTGAAGAATGAGAA+TGG | - | chr3.4:81418329-81418348 | MS.gene045079:intron | 30.0% |
| !! | TACTCATAAAGTACTGTGTA+GGG | + | chr3.4:81420266-81420285 | None:intergenic | 30.0% |
| !! | TAGAGATTTTTGCTTTGTTG+TGG | - | chr3.4:81419021-81419040 | MS.gene045079:intron | 30.0% |
| !! | TGTTTAGAAGTATCAGATTG+AGG | - | chr3.4:81420452-81420471 | MS.gene045079:intron | 30.0% |
| !! | TTACTCATAAAGTACTGTGT+AGG | + | chr3.4:81420267-81420286 | None:intergenic | 30.0% |
| !!! | CCGATCCATTATTTTGATAA+CGG | + | chr3.4:81420026-81420045 | None:intergenic | 30.0% |
| !!! | TACTTTTTCTCTTTCAGACT+TGG | - | chr3.4:81419683-81419702 | MS.gene045079:intron | 30.0% |
| !!! | TGAAATGGTTCGGTTAATTT+TGG | - | chr3.4:81420058-81420077 | MS.gene045079:intron | 30.0% |
| !!! | TGTTTTTTGCAATGTTCACT+TGG | + | chr3.4:81420293-81420312 | None:intergenic | 30.0% |
| ACCAAACTGAACCAAACTTA+TGG | - | chr3.4:81419208-81419227 | MS.gene045079:intron | 35.0% | |
| ACTGAACCAAACTTATGGTT+CGG | - | chr3.4:81419213-81419232 | MS.gene045079:intron | 35.0% | |
| AGTACATGTTTAGTCCAGTT+CGG | + | chr3.4:81419827-81419846 | None:intergenic | 35.0% | |
| ATGGGTTTGATGCTCAAAAA+GGG | - | chr3.4:81418348-81418367 | MS.gene045079:intron | 35.0% | |
| ATGTCAACAGAAATCACTAG+GGG | - | chr3.4:81419091-81419110 | MS.gene045079:intron | 35.0% | |
| CAAGAATTGGTGAAATGGTT+CGG | - | chr3.4:81420048-81420067 | MS.gene045079:intron | 35.0% | |
| CATGTCAACAGAAATCACTA+GGG | - | chr3.4:81419090-81419109 | MS.gene045079:intron | 35.0% | |
| GAACCATTAACCATGTTTCT+AGG | + | chr3.4:81419953-81419972 | None:intergenic | 35.0% | |
| GAAGTTGAAAAGTAGTTGTC+TGG | - | chr3.4:81418286-81418305 | MS.gene045079:intron | 35.0% | |
| GATGCAACAATACACCATTT+GGG | - | chr3.4:81420537-81420556 | MS.gene045079:intron | 35.0% | |
| GATGTTCTTGTAAATAACGC+TGG | - | chr3.4:81418060-81418079 | MS.gene045079:CDS | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | - | chr3.4:81418666-81418685 | MS.gene045079:intron | 35.0% | |
| GTTTAGTCCTTGAAAGTGAA+AGG | + | chr3.4:81420422-81420441 | None:intergenic | 35.0% | |
| TATCAAACTGCCTAGAAACA+TGG | - | chr3.4:81419940-81419959 | MS.gene045079:CDS | 35.0% | |
| TCAACAAACAGATTGGAACT+TGG | - | chr3.4:81420650-81420669 | MS.gene045079:CDS | 35.0% | |
| TCAAGAAGATTCAAAACCAG+TGG | - | chr3.4:81417822-81417841 | MS.gene045079:CDS | 35.0% | |
| TGAAGGAAACCTTGGTTTAA+CGG | - | chr3.4:81419050-81419069 | MS.gene045079:intron | 35.0% | |
| TGTTTACACCCAATTGTACT+TGG | + | chr3.4:81418665-81418684 | None:intergenic | 35.0% | |
| TTAATTGGACTGTGCTTAGT+CGG | - | chr3.4:81419488-81419507 | MS.gene045079:intron | 35.0% | |
| TTAGATGCCTTTCACTTTCA+AGG | - | chr3.4:81420412-81420431 | MS.gene045079:intron | 35.0% | |
| TTTAGCAAACTCGTCTGTAA+GGG | + | chr3.4:81420840-81420859 | None:intergenic | 35.0% | |
| ! | AAGTTTGGTTCAGTTTGGTT+CGG | + | chr3.4:81419207-81419226 | None:intergenic | 35.0% |
| ! | AATGGGTTTGATGCTCAAAA+AGG | - | chr3.4:81418347-81418366 | MS.gene045079:intron | 35.0% |
| ! | ACAATACACCATTTGGGATT+TGG | - | chr3.4:81420543-81420562 | MS.gene045079:intron | 35.0% |
| ! | ACCATAAGTTTGGTTCAGTT+TGG | + | chr3.4:81419212-81419231 | None:intergenic | 35.0% |
| ! | CGTTAGTATCAAACGTGTTT+TGG | + | chr3.4:81418131-81418150 | None:intergenic | 35.0% |
| ! | CTTAAACCAGTGATTTCTAG+GGG | + | chr3.4:81420119-81420138 | None:intergenic | 35.0% |
| ! | TAATGGATCGGTTCAAGAAT+TGG | - | chr3.4:81420035-81420054 | MS.gene045079:intron | 35.0% |
| ! | TCGAAGATTTTTGCAACACT+TGG | - | chr3.4:81419358-81419377 | MS.gene045079:intron | 35.0% |
| !! | AATTTTGGTCCAATTCGGTT+TGG | - | chr3.4:81420073-81420092 | MS.gene045079:intron | 35.0% |
| !! | AGTTTATTAACGGTTCGGTT+CGG | - | chr3.4:81419992-81420011 | MS.gene045079:CDS | 35.0% |
| !! | CGGTTAATTTTGGTCCAATT+CGG | - | chr3.4:81420068-81420087 | MS.gene045079:intron | 35.0% |
| !! | CTTTTAGAGATAGTCTGATC+CGG | - | chr3.4:81420192-81420211 | MS.gene045079:intron | 35.0% |
| !!! | AAAGTAGTTGTCTGGCTTTT+TGG | - | chr3.4:81418294-81418313 | MS.gene045079:intron | 35.0% |
| !!! | TTGTTTTTGGTTCAGTTCGT+AGG | + | chr3.4:81419254-81419273 | None:intergenic | 35.0% |
| AACCAAGAACCAAACCGAAT+TGG | + | chr3.4:81420085-81420104 | None:intergenic | 40.0% | |
| AACTCTGTTCACGCTTTCAT+CGG | + | chr3.4:81418007-81418026 | None:intergenic | 40.0% | |
| AAGCACAAATACTCGGATAC+TGG | + | chr3.4:81418498-81418517 | None:intergenic | 40.0% | |
| AAGTGTAATCTAGCGGAGTT+TGG | - | chr3.4:81420236-81420255 | MS.gene045079:intron | 40.0% | |
| ACTGTAACACCGTTAAACCA+AGG | + | chr3.4:81419062-81419081 | None:intergenic | 40.0% | |
| AGAAAGTCTCTAACACAGAG+AGG | + | chr3.4:81420953-81420972 | None:intergenic | 40.0% | |
| ATATCACTCCATACATGTGC+AGG | - | chr3.4:81418744-81418763 | MS.gene045079:intron | 40.0% | |
| CAGCCATGACAGTAGAATAA+TGG | + | chr3.4:81420916-81420935 | None:intergenic | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | - | chr3.4:81418816-81418835 | MS.gene045079:intron | 40.0% | |
| CCATGTCAACAGAAATCACT+AGG | - | chr3.4:81419089-81419108 | MS.gene045079:intron | 40.0% | |
| CCCTATGAAGCACAAATACT+CGG | + | chr3.4:81418505-81418524 | None:intergenic | 40.0% | |
| CCGAGTATTTGTGCTTCATA+GGG | - | chr3.4:81418502-81418521 | MS.gene045079:intron | 40.0% | |
| CCTAGTGATTTCTGTTGACA+TGG | + | chr3.4:81419092-81419111 | None:intergenic | 40.0% | |
| CGGTTCAAGAATTGGTGAAA+TGG | - | chr3.4:81420043-81420062 | MS.gene045079:intron | 40.0% | |
| CTCTAACACAGAGAGGTAAA+TGG | + | chr3.4:81420946-81420965 | None:intergenic | 40.0% | |
| CTGCCTAGAAACATGGTTAA+TGG | - | chr3.4:81419947-81419966 | MS.gene045079:CDS | 40.0% | |
| GAGAAAATAGAGCTCTCTCT+CGG | + | chr3.4:81420802-81420821 | None:intergenic | 40.0% | |
| GGAGCTGTGAAGTCAAATAT+TGG | - | chr3.4:81420707-81420726 | MS.gene045079:CDS | 40.0% | |
| GGATGCAACAATACACCATT+TGG | - | chr3.4:81420536-81420555 | MS.gene045079:intron | 40.0% | |
| GGTTAACCGAACCATAAGTT+TGG | + | chr3.4:81419222-81419241 | None:intergenic | 40.0% | |
| GGTTCGTTCCAAACCTTAAA+CGG | + | chr3.4:81419186-81419205 | None:intergenic | 40.0% | |
| GGTTTGAATAGTTTCCACTC+CGG | + | chr3.4:81420764-81420783 | None:intergenic | 40.0% | |
| GTTCCAAACCTTAAACGGTT+CGG | + | chr3.4:81419181-81419200 | None:intergenic | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+AGG | + | chr3.4:81420841-81420860 | None:intergenic | 40.0% | |
| TCCGAGTATTTGTGCTTCAT+AGG | - | chr3.4:81418501-81418520 | MS.gene045079:intron | 40.0% | |
| TGGCCATTATTCTACTGTCA+TGG | - | chr3.4:81420910-81420929 | MS.gene045079:CDS | 40.0% | |
| TTGTTATGCTTACACCGAAC+TGG | - | chr3.4:81419810-81419829 | MS.gene045079:intron | 40.0% | |
| TTGTTGCATCCACCAAAACT+TGG | + | chr3.4:81420527-81420546 | None:intergenic | 40.0% | |
| ! | AAACCGAACCGTTTAAGGTT+TGG | - | chr3.4:81419175-81419194 | MS.gene045079:intron | 40.0% |
| ! | ACACGCGTTCTGTTCATTTT+AGG | + | chr3.4:81419920-81419939 | None:intergenic | 40.0% |
| ! | ACAGTACTAAGGCCAAGTTT+TGG | - | chr3.4:81420512-81420531 | MS.gene045079:intron | 40.0% |
| ! | AGAGAGAGCTCTATTTTCTC+AGG | - | chr3.4:81420802-81420821 | MS.gene045079:CDS | 40.0% |
| ! | AGAGAGCTCTATTTTCTCAG+GGG | - | chr3.4:81420804-81420823 | MS.gene045079:CDS | 40.0% |
| ! | ATACACCATTTGGGATTTGG+TGG | - | chr3.4:81420546-81420565 | MS.gene045079:intron | 40.0% |
| ! | ATATTTGACTTCACAGCTCC+AGG | + | chr3.4:81420707-81420726 | None:intergenic | 40.0% |
| ! | GAGAGAGCTCTATTTTCTCA+GGG | - | chr3.4:81420803-81420822 | MS.gene045079:CDS | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | + | chr3.4:81420706-81420725 | None:intergenic | 40.0% |
| !! | TTAACGTTGGAAGTGTTGCT+GGG | - | chr3.4:81418829-81418848 | MS.gene045079:intron | 40.0% |
| AAACCAGTGGTTCTCATCAC+AGG | - | chr3.4:81417835-81417854 | MS.gene045079:CDS | 45.0% | |
| AACGCTGGTGTTCTTTGTGT+GGG | - | chr3.4:81418075-81418094 | MS.gene045079:CDS | 45.0% | |
| ATGCAGGTGGTTTCTTCCTA+AGG | + | chr3.4:81420880-81420899 | None:intergenic | 45.0% | |
| ATGTGCAGGAACCATGAGAA+TGG | - | chr3.4:81418758-81418777 | MS.gene045079:intron | 45.0% | |
| CAACAGAAATCACTAGGGGT+GGG | - | chr3.4:81419095-81419114 | MS.gene045079:intron | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | - | chr3.4:81418798-81418817 | MS.gene045079:intron | 45.0% | |
| GATGTTGTGAATGTTCTCCC+TGG | - | chr3.4:81420686-81420705 | MS.gene045079:CDS | 45.0% | |
| GCGCAGACAATTCTGTTTGA+AGG | - | chr3.4:81418387-81418406 | MS.gene045079:intron | 45.0% | |
| GTATCAGATTGAGGCTCTAC+TGG | - | chr3.4:81420461-81420480 | MS.gene045079:intron | 45.0% | |
| GTCGAACACTGACACATGTT+GGG | + | chr3.4:81418425-81418444 | None:intergenic | 45.0% | |
| TAACGCTGGTGTTCTTTGTG+TGG | - | chr3.4:81418074-81418093 | MS.gene045079:CDS | 45.0% | |
| TAGTTCCTCACATGGCAACT+AGG | - | chr3.4:81418790-81418809 | MS.gene045079:intron | 45.0% | |
| TCAACAGAAATCACTAGGGG+TGG | - | chr3.4:81419094-81419113 | MS.gene045079:intron | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | - | chr3.4:81418797-81418816 | MS.gene045079:intron | 45.0% | |
| TCATGGTTCCTGCACATGTA+TGG | + | chr3.4:81418755-81418774 | None:intergenic | 45.0% | |
| TGGGAAAACCGAACCGTTTA+AGG | - | chr3.4:81419170-81419189 | MS.gene045079:intron | 45.0% | |
| TGTCGAACACTGACACATGT+TGG | + | chr3.4:81418426-81418445 | None:intergenic | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | + | chr3.4:81418798-81418817 | None:intergenic | 45.0% | |
| TTAGGAAGAAACCACCTGCA+TGG | - | chr3.4:81420879-81420898 | MS.gene045079:CDS | 45.0% | |
| ! | AAACCAGTGATTTCTAGGGG+TGG | + | chr3.4:81420116-81420135 | None:intergenic | 45.0% |
| ! | AACCAGTGATTTCTAGGGGT+GGG | + | chr3.4:81420115-81420134 | None:intergenic | 45.0% |
| ! | CTTTGTTGTGGTGTACGTGA+AGG | - | chr3.4:81419033-81419052 | MS.gene045079:intron | 45.0% |
| ! | GTGATGGAATTTGAGGCACT+TGG | - | chr3.4:81419396-81419415 | MS.gene045079:intron | 45.0% |
| !! | GTACTAAGGCCAAGTTTTGG+TGG | - | chr3.4:81420515-81420534 | MS.gene045079:intron | 45.0% |
| !! | GTCCAATTCGGTTTGGTTCT+TGG | - | chr3.4:81420080-81420099 | MS.gene045079:intron | 45.0% |
| !! | GTGTTTTGGATTGCAGAGAG+CGG | + | chr3.4:81418117-81418136 | None:intergenic | 45.0% |
| !! | GTTAACGTTGGAAGTGTTGC+TGG | - | chr3.4:81418828-81418847 | MS.gene045079:intron | 45.0% |
| AGAGCGGAACTTCAGCAAGT+GGG | + | chr3.4:81418101-81418120 | None:intergenic | 50.0% | |
| AGGAACCATGAGAATGGTCC+AGG | - | chr3.4:81418764-81418783 | MS.gene045079:intron | 50.0% | |
| ATAGTTTCCACTCCGGCATG+CGG | + | chr3.4:81420757-81420776 | None:intergenic | 50.0% | |
| CAACCTGTGATGAGAACCAC+TGG | + | chr3.4:81417841-81417860 | None:intergenic | 50.0% | |
| CTTCCTAAGGACAGCAGCTA+CGG | + | chr3.4:81420867-81420886 | None:intergenic | 50.0% | |
| GCACTGTAAGCACCATTCCA+AGG | + | chr3.4:81418867-81418886 | None:intergenic | 50.0% | |
| GGTGTACGTGAAGGAAACCT+TGG | - | chr3.4:81419042-81419061 | MS.gene045079:intron | 50.0% | |
| GTCTTGATCCAAATCCGCCA+TGG | + | chr3.4:81417950-81417969 | None:intergenic | 50.0% | |
| GTTCTCATCACAGGTTGCAG+CGG | - | chr3.4:81417844-81417863 | MS.gene045079:CDS | 50.0% | |
| TACAGCCTGGACCATTCTCA+TGG | + | chr3.4:81418772-81418791 | None:intergenic | 50.0% | |
| TCCAGCCACCAAATCCCAAA+TGG | + | chr3.4:81420554-81420573 | None:intergenic | 50.0% | |
| TTGGCATCTGGACCTTGGAA+TGG | - | chr3.4:81418852-81418871 | MS.gene045079:intron | 50.0% | |
| TTTGCAGCTGTTAGCTGCGA+AGG | + | chr3.4:81417899-81417918 | None:intergenic | 50.0% | |
| ! | TCTCGGATTGCCGCTTCAAA+TGG | + | chr3.4:81420785-81420804 | None:intergenic | 50.0% |
| ! | TTCTGTTTGAAGGCGTGTCC+CGG | - | chr3.4:81418397-81418416 | MS.gene045079:intron | 50.0% |
| !! | ACCATTTGGGATTTGGTGGC+TGG | - | chr3.4:81420550-81420569 | MS.gene045079:intron | 50.0% |
| !! | ACGTTCAACCATGGCGGATT+TGG | - | chr3.4:81417939-81417958 | MS.gene045079:CDS | 50.0% |
| ACTGACACATGTTGGGCACC+GGG | + | chr3.4:81418418-81418437 | None:intergenic | 55.0% | |
| AGCCATCTACAACCGCATGC+CGG | - | chr3.4:81420742-81420761 | MS.gene045079:CDS | 55.0% | |
| CACTGACACATGTTGGGCAC+CGG | + | chr3.4:81418419-81418438 | None:intergenic | 55.0% | |
| CAGCAGGTCACGTTCAACCA+TGG | - | chr3.4:81417930-81417949 | MS.gene045079:CDS | 55.0% | |
| CAGGTCACGTTCAACCATGG+CGG | - | chr3.4:81417933-81417952 | MS.gene045079:CDS | 55.0% | |
| CATGGTTGAACGTGACCTGC+TGG | + | chr3.4:81417932-81417951 | None:intergenic | 55.0% | |
| CCACCTGCATGGTTCTCGTA+TGG | - | chr3.4:81420890-81420909 | MS.gene045079:CDS | 55.0% | |
| CCAGGCTGTAGTTCCTCACA+TGG | - | chr3.4:81418782-81418801 | MS.gene045079:intron | 55.0% | |
| CCATACGAGAACCATGCAGG+TGG | + | chr3.4:81420893-81420912 | None:intergenic | 55.0% | |
| CCATGTGAGGAACTACAGCC+TGG | + | chr3.4:81418785-81418804 | None:intergenic | 55.0% | |
| CGCAGCTAACAGCTGCAAAG+TGG | - | chr3.4:81417900-81417919 | MS.gene045079:CDS | 55.0% | |
| GAAATCACTAGGGGTGGGCA+TGG | - | chr3.4:81419100-81419119 | MS.gene045079:intron | 55.0% | |
| GAGAGCGGAACTTCAGCAAG+TGG | + | chr3.4:81418102-81418121 | None:intergenic | 55.0% | |
| GCAAAGTGGTTGCAACCAGC+AGG | - | chr3.4:81417914-81417933 | MS.gene045079:CDS | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | + | chr3.4:81420738-81420757 | None:intergenic | 55.0% | |
| TGCCCACCCCTAGAAATCAC+TGG | - | chr3.4:81420110-81420129 | MS.gene045079:intron | 55.0% | |
| TGGCCATACGAGAACCATGC+AGG | + | chr3.4:81420896-81420915 | None:intergenic | 55.0% | |
| !! | AGTGTTGCTGGGTTGGCATC+TGG | - | chr3.4:81418840-81418859 | MS.gene045079:intron | 55.0% |
| !! | CGTTGGAAGTGTTGCTGGGT+TGG | - | chr3.4:81418833-81418852 | MS.gene045079:intron | 55.0% |
| ATCACAGGTTGCAGCGGAGG+AGG | - | chr3.4:81417850-81417869 | MS.gene045079:CDS | 60.0% | |
| CACTAGGGGTGGGCATGGTT+TGG | - | chr3.4:81419105-81419124 | MS.gene045079:intron | 60.0% | |
| CTCATCACAGGTTGCAGCGG+AGG | - | chr3.4:81417847-81417866 | MS.gene045079:CDS | 60.0% | |
| CTCCGGCATGCGGTTGTAGA+TGG | + | chr3.4:81420747-81420766 | None:intergenic | 60.0% | |
| GCACCGTAGCTGCTGTCCTT+AGG | - | chr3.4:81420861-81420880 | MS.gene045079:CDS | 60.0% | |
| TCTACAACCGCATGCCGGAG+TGG | - | chr3.4:81420747-81420766 | MS.gene045079:CDS | 60.0% | |
| ! | GGTTGCAGCGGAGGAGGTAT+AGG | - | chr3.4:81417856-81417875 | MS.gene045079:CDS | 60.0% |
| !! | CTGGGTTGGCATCTGGACCT+TGG | - | chr3.4:81418847-81418866 | MS.gene045079:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 81417799 | 81420997 | 81417799 | ID=MS.gene045079 |
| chr3.4 | mRNA | 81417799 | 81420997 | 81417799 | ID=MS.gene045079.t1;Parent=MS.gene045079 |
| chr3.4 | exon | 81420640 | 81420997 | 81420640 | ID=MS.gene045079.t1.exon1;Parent=MS.gene045079.t1 |
| chr3.4 | CDS | 81420640 | 81420997 | 81420640 | ID=cds.MS.gene045079.t1;Parent=MS.gene045079.t1 |
| chr3.4 | exon | 81419871 | 81420030 | 81419871 | ID=MS.gene045079.t1.exon2;Parent=MS.gene045079.t1 |
| chr3.4 | CDS | 81419871 | 81420030 | 81419871 | ID=cds.MS.gene045079.t1;Parent=MS.gene045079.t1 |
| chr3.4 | exon | 81417799 | 81418135 | 81417799 | ID=MS.gene045079.t1.exon3;Parent=MS.gene045079.t1 |
| chr3.4 | CDS | 81417799 | 81418135 | 81417799 | ID=cds.MS.gene045079.t1;Parent=MS.gene045079.t1 |
| Gene Sequence |
| Protein sequence |
